******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG18262.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:23027182-23027302 1.0000 120 chr2L:17384550-17384670 1.0000 120 chr3L:7962106-7962226 1.0000 120 chr2R:14848342-14848462 1.0000 120 chr2L:13640539-13640659 1.0000 120 chrX:18207607-18207727 1.0000 120 chr3L:12090599-12090719 1.0000 120 chr3L:12090399-12090519 1.0000 120 chr3L:15175001-15175121 1.0000 120 chrX:18208600-18208720 1.0000 120 chr2L:18919626-18919746 1.0000 120 chr3R:17814316-17814436 1.0000 120 chr3R:16801204-16801324 1.0000 120 chr3R:13548204-13548324 1.0000 120 chr2R:22403620-22403740 1.0000 120 chrX:8671787-8671907 1.0000 120 chrX:10741090-10741210 1.0000 120 chr3L:5809260-5809380 1.0000 120 chr2L:9586080-9586200 1.0000 120 chr3L:14961172-14961292 1.0000 120 chr3R:24580516-24580636 1.0000 120 chr3L:13403257-13403377 1.0000 120 chr2L:5445983-5446103 1.0000 120 chrX:5696132-5696252 1.0000 120 chr2L:10689539-10689659 1.0000 120 chr3L:14611481-14611601 1.0000 120 chr3L:13032711-13032831 1.0000 120 chr3L:1083448-1083568 1.0000 120 chrX:18523375-18523495 1.0000 120 chr3L:6159984-6160104 1.0000 120 chr3R:11198217-11198337 1.0000 120 chrX:17471729-17471849 1.0000 120 chr2R:14915164-14915284 1.0000 120 chr3L:15670554-15670674 1.0000 120 chr3L:7953041-7953161 1.0000 120 chr2R:9684368-9684488 1.0000 120 chr2R:9684166-9684286 1.0000 120 chrX:15364647-15364767 1.0000 120 chr3L:18290482-18290602 1.0000 120 chr2L:13876785-13876905 1.0000 120 chr3R:6241385-6241505 1.0000 120 chr3R:19343698-19343818 1.0000 120 chr3L:6162141-6162261 1.0000 120 chr3L:18102187-18102307 1.0000 120 chr3L:7009535-7009655 1.0000 120 chr2L:18906774-18906894 1.0000 120 chr3L:16015958-16016078 1.0000 120 chr2L:20204753-20204873 1.0000 120 chr3L:19056947-19057067 1.0000 120 chr2R:20027251-20027371 1.0000 120 chr2R:12020602-12020722 1.0000 120 chrX:7706597-7706717 1.0000 120 chr2L:18896946-18897066 1.0000 120 chr3R:21347912-21348032 1.0000 120 chr4:411392-411512 1.0000 120 chr3L:22130332-22130452 1.0000 120 chrX:17582058-17582178 1.0000 120 chr3L:21463024-21463144 1.0000 120 chr2R:12720735-12720855 1.0000 120 chr3L:10514975-10515095 1.0000 120 chrX:21045737-21045857 1.0000 120 chr3L:16013353-16013473 1.0000 120 chr2L:14235117-14235237 1.0000 120 chr3L:18227502-18227622 1.0000 120 chr2L:552570-552690 1.0000 120 chr3L:7953878-7953998 1.0000 120 chr3L:623681-623801 1.0000 120 chrX:3073717-3073837 1.0000 120 chr3L:110085-110205 1.0000 120 chr2R:11803307-11803427 1.0000 120 chr3L:8423235-8423355 1.0000 120 chr3R:30734742-30734862 1.0000 120 chr3L:19234171-19234291 1.0000 120 chr3R:7646371-7646491 1.0000 120 chrX:18914299-18914419 1.0000 120 chr2L:10276584-10276704 1.0000 120 chr3L:10849683-10849803 1.0000 120 chr3R:13448486-13448606 1.0000 120 chr3R:21535460-21535580 1.0000 120 chr3R:16886940-16887060 1.0000 120 chr2R:20126665-20126785 1.0000 120 chr3L:14086383-14086503 1.0000 120 chrX:457959-458079 1.0000 120 chr2R:22420711-22420831 1.0000 120 chr3L:15199333-15199453 1.0000 120 chrX:8671510-8671630 1.0000 120 chr3L:15777514-15777634 1.0000 120 chr3L:1167037-1167157 1.0000 120 chr3L:10536433-10536553 1.0000 120 chr3L:804707-804827 1.0000 120 chr3L:11309899-11310019 1.0000 120 chr3R:29699338-29699458 1.0000 120 chrX:9615525-9615645 1.0000 120 chr2L:7966199-7966319 1.0000 120 chr3L:18229113-18229233 1.0000 120 chr2R:15351359-15351479 1.0000 120 chr3L:18795545-18795665 1.0000 120 chr3L:6885769-6885889 1.0000 120 chr2L:3439673-3439793 1.0000 120 chrX:7166455-7166575 1.0000 120 chr3L:18243297-18243417 1.0000 120 chr2L:4286262-4286382 1.0000 120 chrX:17501673-17501793 1.0000 120 chr3R:21594426-21594546 1.0000 120 chr3L:16744018-16744138 1.0000 120 chr2L:7293585-7293705 1.0000 120 chr3R:29310015-29310135 1.0000 120 chr2L:3845037-3845157 1.0000 120 chr3L:16486602-16486722 1.0000 120 chr3L:18273226-18273346 1.0000 120 chr3R:15650431-15650551 1.0000 120 chr2R:14971221-14971341 1.0000 120 chr3L:3978095-3978215 1.0000 120 chr3L:3873192-3873312 1.0000 120 chr3R:14598090-14598210 1.0000 120 chrX:18910966-18911086 1.0000 120 chr2R:9711954-9712074 1.0000 120 chr3R:27826303-27826423 1.0000 120 chr3L:7592255-7592375 1.0000 120 chr3L:6834676-6834796 1.0000 120 chr3R:21887639-21887759 1.0000 120 chr2R:16091930-16092050 1.0000 120 chr3R:6674696-6674816 1.0000 120 chr3R:30733254-30733374 1.0000 120 chr3L:10337725-10337845 1.0000 120 chr2L:5042185-5042305 1.0000 120 chr3L:15253731-15253851 1.0000 120 chr3R:10354049-10354169 1.0000 120 chr3L:7634864-7634984 1.0000 120 chr3R:21834393-21834513 1.0000 120 chr3L:12590264-12590384 1.0000 120 chr3L:1868943-1869063 1.0000 120 chr2R:15919825-15919945 1.0000 120 chr3L:13227006-13227126 1.0000 120 chr2L:14537598-14537718 1.0000 120 chrX:5966057-5966177 1.0000 120 chr3L:19073987-19074107 1.0000 120 chr3L:11467115-11467235 1.0000 120 chr3L:22910043-22910163 1.0000 120 chr3R:19108263-19108383 1.0000 120 chr2R:6219917-6220037 1.0000 120 chr3R:23943162-23943282 1.0000 120 chr3L:4691912-4692032 1.0000 120 chr2L:14690932-14691052 1.0000 120 chr3L:716262-716382 1.0000 120 chr3R:13803989-13804109 1.0000 120 chr3R:16510276-16510396 1.0000 120 chrX:17799218-17799338 1.0000 120 chr3L:380950-381070 1.0000 120 chr3R:31689839-31689959 1.0000 120 chr3L:5994184-5994304 1.0000 120 chr2L:14212826-14212946 1.0000 120 chrX:17780402-17780522 1.0000 120 chr3L:5280085-5280205 1.0000 120 chr3R:21830311-21830431 1.0000 120 chr3R:10449122-10449242 1.0000 120 chr3L:5630340-5630460 1.0000 120 chr2R:21883200-21883320 1.0000 120 chrX:6982241-6982361 1.0000 120 chr3L:15693231-15693351 1.0000 120 chr3R:8920242-8920362 1.0000 120 chr3R:14716662-14716782 1.0000 120 chr2L:3805396-3805516 1.0000 120 chr3L:3059456-3059576 1.0000 120 chr2R:14803439-14803559 1.0000 120 chr2L:11341104-11341224 1.0000 120 chr2L:3851416-3851536 1.0000 120 chr3R:10626119-10626239 1.0000 120 chrX:8444967-8445087 1.0000 120 chr2L:15432396-15432516 1.0000 120 chr2L:18895148-18895268 1.0000 120 chr3L:18225084-18225204 1.0000 120 chr2L:7616948-7617068 1.0000 120 chr3L:11373978-11374098 1.0000 120 chr3L:17113370-17113490 1.0000 120 chrX:15618029-15618149 1.0000 120 chr2L:6819658-6819778 1.0000 120 chr3R:9159912-9160032 1.0000 120 chr3L:18272359-18272479 1.0000 120 chr3L:10951202-10951322 1.0000 120 chr3L:5952209-5952329 1.0000 120 chrX:12724840-12724960 1.0000 120 chr2L:11326524-11326644 1.0000 120 chr2L:14252594-14252714 1.0000 120 chr2L:10752350-10752470 1.0000 120 chr3R:20950219-20950339 1.0000 120 chrX:12225423-12225543 1.0000 120 chrX:18524957-18525077 1.0000 120 chr2L:14562360-14562480 1.0000 120 chr3L:10350862-10350982 1.0000 120 chr3R:21187972-21188092 1.0000 120 chr3R:21420088-21420208 1.0000 120 chr2L:19059029-19059149 1.0000 120 chr2R:9681930-9682050 1.0000 120 chr3R:13907827-13907947 1.0000 120 chrX:7552276-7552396 1.0000 120 chr3R:21206392-21206512 1.0000 120 chr3L:9505480-9505600 1.0000 120 chr3R:10636149-10636269 1.0000 120 chr2L:19884580-19884700 1.0000 120 chrX:17782150-17782270 1.0000 120 chr3L:7861939-7862059 1.0000 120 chr3L:13068484-13068604 1.0000 120 chr2L:15442346-15442466 1.0000 120 chr2L:10986387-10986507 1.0000 120 chr2L:9996689-9996809 1.0000 120 chr3R:13804192-13804312 1.0000 120 chrX:19225038-19225158 1.0000 120 chr3R:17056991-17057111 1.0000 120 chr3R:14386247-14386367 1.0000 120 chr2L:17588813-17588933 1.0000 120 chrX:5970334-5970454 1.0000 120 chr3R:13469381-13469501 1.0000 120 chr3L:905152-905272 1.0000 120 chr2L:9595007-9595127 1.0000 120 chr3R:23303403-23303523 1.0000 120 chrX:18946953-18947073 1.0000 120 chr3R:27205138-27205258 1.0000 120 chr2L:18482379-18482499 1.0000 120 chr3R:29265226-29265346 1.0000 120 chr2L:7295117-7295237 1.0000 120 chr3R:22878562-22878682 1.0000 120 chr3L:517375-517495 1.0000 120 chr3R:31704670-31704790 1.0000 120 chr3L:15321101-15321221 1.0000 120 chr3R:29581635-29581755 1.0000 120 chr2R:19874651-19874771 1.0000 120 chr2L:13640740-13640860 1.0000 120 chr3R:31706269-31706389 1.0000 120 chr2R:14305239-14305359 1.0000 120 chr3R:26012943-26013063 1.0000 120 chr3L:19557343-19557463 1.0000 120 chr3R:13446602-13446722 1.0000 120 chr3L:9042766-9042886 1.0000 120 chr3L:14172622-14172742 1.0000 120 chr3L:2651935-2652055 1.0000 120 chr2R:17533766-17533886 1.0000 120 chr3L:19338400-19338520 1.0000 120 chr3L:21047142-21047262 1.0000 120 chr2L:9206526-9206646 1.0000 120 chr3L:18402674-18402794 1.0000 120 chr3R:30789570-30789690 1.0000 120 chr2L:3856465-3856585 1.0000 120 chr2L:4133170-4133290 1.0000 120 chr3R:15652743-15652863 1.0000 120 chr3L:19179567-19179687 1.0000 120 chrX:20644080-20644200 1.0000 120 chrX:3396971-3397091 1.0000 120 chr3R:11368867-11368987 1.0000 120 chr3L:15532848-15532968 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG18262/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG18262.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.37 C 0.132 G 0.129 T 0.37 Background letter frequencies (from file dataset with add-one prior applied): A 0.37 C 0.132 G 0.129 T 0.37 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCACTBGY MEME-1 width = 8 sites = 19 llr = 187 E-value = 1.2e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACTBGY MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::7::::: pos.-specific C 2a:91226 probability G 8:311481 matrix T ::::84:3 bits 3.0 * 2.7 * * 2.4 ** * * 2.1 ** * * Relative 1.8 ** * * Entropy 1.5 ** * * (14.2 bits) 1.2 ** * ** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCACTGGC consensus G T T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTBGY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:552570-552690 25 9.12e-07 ACTTCGAGGG GCACTGGC TGCTCGGGAC chrX:17471729-17471849 13 9.12e-07 TTGTTTCAAT GCACTGGC ATTGTGAGCG chr3R:21887639-21887759 1 1.93e-06 . GCACTCGC TATAGAACTC chr3R:21535460-21535580 105 2.69e-06 TTATATTTAA GCGCTTGC TTAAAGTT chrX:15618029-15618149 1 5.10e-06 . GCACTTGC AGTTGCCAGG chr3L:13227006-13227126 12 5.10e-06 AACAAAAATT GCACTTGC GACCATGTGA chrX:18910966-18911086 16 6.41e-06 TCACGAACTT GCGCTGGT GTTGCGCTAT chr3L:12090399-12090519 7 1.25e-05 gCGTTG GCACGTGC GTCAAAAGCG chrX:5970334-5970454 46 1.34e-05 GCGGACATGG GCGCTGGG GAAGGGAGTC chr3R:17056991-17057111 84 1.34e-05 ATGTAAGTAT GCACCTGC ATATGTGCTC chr3R:23943162-23943282 75 1.73e-05 CGCGGCACCA CCGCCGGC GGATTACTCG chr3R:29310015-29310135 25 1.73e-05 GAATACAAAT GCACTCGT GGAAATAAGT chr2R:14305239-14305359 1 2.80e-05 . GCACTTCC TCTCATTCTA chrX:15364647-15364767 100 3.44e-05 TAACAAAACA GCACTTGT TGTTACTGAA chrX:3396971-3397091 1 3.65e-05 . GCGCGCGT GAGTCTGCGT chr3L:18273226-18273346 99 3.65e-05 ttattttatt CCGCTGGT AAATATAACA chr2R:14971221-14971341 2 3.91e-05 A CCACTGCC TTTTGATTCA chr2L:4133170-4133290 32 4.48e-05 TTCTAAAAAT GCACTGCT CGAGCATTTC chr3R:21347912-21348032 105 4.83e-05 AGTATGAAAT GCAGTCGC ATAAAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTBGY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:552570-552690 9.1e-07 24_[+1]_88 chrX:17471729-17471849 9.1e-07 12_[+1]_100 chr3R:21887639-21887759 1.9e-06 [+1]_112 chr3R:21535460-21535580 2.7e-06 104_[+1]_8 chrX:15618029-15618149 5.1e-06 [+1]_112 chr3L:13227006-13227126 5.1e-06 11_[+1]_101 chrX:18910966-18911086 6.4e-06 15_[+1]_97 chr3L:12090399-12090519 1.3e-05 6_[+1]_106 chrX:5970334-5970454 1.3e-05 45_[+1]_67 chr3R:17056991-17057111 1.3e-05 83_[+1]_29 chr3R:23943162-23943282 1.7e-05 74_[+1]_38 chr3R:29310015-29310135 1.7e-05 24_[+1]_88 chr2R:14305239-14305359 2.8e-05 [+1]_112 chrX:15364647-15364767 3.4e-05 99_[+1]_13 chrX:3396971-3397091 3.7e-05 [+1]_112 chr3L:18273226-18273346 3.7e-05 98_[+1]_14 chr2R:14971221-14971341 3.9e-05 1_[+1]_111 chr2L:4133170-4133290 4.5e-05 31_[+1]_81 chr3R:21347912-21348032 4.8e-05 104_[+1]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTBGY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACTBGY width=8 seqs=19 chr2L:552570-552690 ( 25) GCACTGGC 1 chrX:17471729-17471849 ( 13) GCACTGGC 1 chr3R:21887639-21887759 ( 1) GCACTCGC 1 chr3R:21535460-21535580 ( 105) GCGCTTGC 1 chrX:15618029-15618149 ( 1) GCACTTGC 1 chr3L:13227006-13227126 ( 12) GCACTTGC 1 chrX:18910966-18911086 ( 16) GCGCTGGT 1 chr3L:12090399-12090519 ( 7) GCACGTGC 1 chrX:5970334-5970454 ( 46) GCGCTGGG 1 chr3R:17056991-17057111 ( 84) GCACCTGC 1 chr3R:23943162-23943282 ( 75) CCGCCGGC 1 chr3R:29310015-29310135 ( 25) GCACTCGT 1 chr2R:14305239-14305359 ( 1) GCACTTCC 1 chrX:15364647-15364767 ( 100) GCACTTGT 1 chrX:3396971-3397091 ( 1) GCGCGCGT 1 chr3L:18273226-18273346 ( 99) CCGCTGGT 1 chr2R:14971221-14971341 ( 2) CCACTGCC 1 chr2L:4133170-4133290 ( 32) GCACTGCT 1 chr3R:21347912-21348032 ( 105) GCAGTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTBGY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4349 E= 1.2e+000 -1089 26 271 -1089 -1089 293 -1089 -1089 89 -1089 129 -1089 -1089 285 -129 -1089 -1089 -32 -29 109 -1089 68 171 0 -1089 26 271 -1089 -1089 226 -129 -23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTBGY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 1.2e+000 0.000000 0.157895 0.842105 0.000000 0.000000 1.000000 0.000000 0.000000 0.684211 0.000000 0.315789 0.000000 0.000000 0.947368 0.052632 0.000000 0.000000 0.105263 0.105263 0.789474 0.000000 0.210526 0.421053 0.368421 0.000000 0.157895 0.842105 0.000000 0.000000 0.631579 0.052632 0.315789 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTBGY MEME-1 regular expression -------------------------------------------------------------------------------- GC[AG]CT[GTC]G[CT] -------------------------------------------------------------------------------- Time 8.29 secs. ******************************************************************************** ******************************************************************************** MOTIF CRCWCRSC MEME-2 width = 8 sites = 10 llr = 108 E-value = 2.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRCWCRSC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :5:6:5:: pos.-specific C 91a1a:6a probability G 14:::54: matrix T :::3:::: bits 3.0 * * * 2.7 * * * 2.4 * * * * 2.1 * * * ** Relative 1.8 * * * ** Entropy 1.5 * * * ** (15.5 bits) 1.2 * * **** 0.9 *** **** 0.6 *** **** 0.3 ******** 0.0 -------- Multilevel CACACACC consensus G T GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCWCRSC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17782150-17782270 19 1.53e-06 AATTTTATAC CACACGCC AAAAATCAAT chr2R:15919825-15919945 44 1.53e-06 GTAATTAGAC CACACGCC ATATAAAATA chr2R:14848342-14848462 66 1.53e-06 TTTGACGTTT CGCCCGCC CGGTTGGAAA chr3R:23303403-23303523 86 8.40e-06 TCTCTCTGTG CACACACC CTTatatccc chr3L:7009535-7009655 110 8.40e-06 CCTAAATAGT CACACACC TAA chr2L:552570-552690 64 9.09e-06 CGGCGTTTGC CACTCGGC TCGCGAGCTT chrX:19225038-19225158 13 1.00e-05 TTATTTTTAA CGCTCAGC ATTTTGGGAA chr3L:7953041-7953161 43 1.00e-05 TTCTATCCTT CGCTCAGC AGCTTTTCGA chr3R:11198217-11198337 5 1.36e-05 cctc cccacacc acaAAAATAC chrX:5970334-5970454 30 1.69e-05 CAACAACAAC GGCACGGC GGACATGGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCWCRSC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17782150-17782270 1.5e-06 18_[+2]_94 chr2R:15919825-15919945 1.5e-06 43_[+2]_69 chr2R:14848342-14848462 1.5e-06 65_[+2]_47 chr3R:23303403-23303523 8.4e-06 85_[+2]_27 chr3L:7009535-7009655 8.4e-06 109_[+2]_3 chr2L:552570-552690 9.1e-06 63_[+2]_49 chrX:19225038-19225158 1e-05 12_[+2]_100 chr3L:7953041-7953161 1e-05 42_[+2]_70 chr3R:11198217-11198337 1.4e-05 4_[+2]_108 chrX:5970334-5970454 1.7e-05 29_[+2]_83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCWCRSC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRCWCRSC width=8 seqs=10 chrX:17782150-17782270 ( 19) CACACGCC 1 chr2R:15919825-15919945 ( 44) CACACGCC 1 chr2R:14848342-14848462 ( 66) CGCCCGCC 1 chr3R:23303403-23303523 ( 86) CACACACC 1 chr3L:7009535-7009655 ( 110) CACACACC 1 chr2L:552570-552690 ( 64) CACTCGGC 1 chrX:19225038-19225158 ( 13) CGCTCAGC 1 chr3L:7953041-7953161 ( 43) CGCTCAGC 1 chr3R:11198217-11198337 ( 5) CCCACACC 1 chrX:5970334-5970454 ( 30) GGCACGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCWCRSC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 2.8e+003 -997 277 -37 -997 43 -40 163 -997 -997 292 -997 -997 70 -40 -997 -30 -997 292 -997 -997 43 -997 195 -997 -997 219 163 -997 -997 292 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCWCRSC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.8e+003 0.000000 0.900000 0.100000 0.000000 0.500000 0.100000 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.100000 0.000000 0.300000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCWCRSC MEME-2 regular expression -------------------------------------------------------------------------------- C[AG]C[AT]C[AG][CG]C -------------------------------------------------------------------------------- Time 14.60 secs. ******************************************************************************** ******************************************************************************** MOTIF GWGCGGTG MEME-3 width = 8 sites = 3 llr = 41 E-value = 3.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GWGCGGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :7:::::: pos.-specific C :::a:::: probability G a:a:aa:a matrix T :3::::a: bits 3.0 * **** * 2.7 * **** * 2.4 * **** * 2.1 * **** * Relative 1.8 * **** * Entropy 1.5 * ****** (19.7 bits) 1.2 * ****** 0.9 * ****** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GAGCGGTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGCGGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23943162-23943282 11 6.46e-07 TCTCCGGCGA GAGCGGTG CAAACTTTTC chr2L:10276584-10276704 108 6.46e-07 tGTTTACAGT GAGCGGTG TTtac chrX:18524957-18525077 7 1.29e-06 TATTTA GTGCGGTG ACTCTCAATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGCGGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23943162-23943282 6.5e-07 10_[+3]_102 chr2L:10276584-10276704 6.5e-07 107_[+3]_5 chrX:18524957-18525077 1.3e-06 6_[+3]_106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGCGGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GWGCGGTG width=8 seqs=3 chr3R:23943162-23943282 ( 11) GAGCGGTG 1 chr2L:10276584-10276704 ( 108) GAGCGGTG 1 chrX:18524957-18525077 ( 7) GTGCGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGCGGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 3.7e+003 -823 -823 295 -823 85 -823 -823 -15 -823 -823 295 -823 -823 292 -823 -823 -823 -823 295 -823 -823 -823 295 -823 -823 -823 -823 143 -823 -823 295 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGCGGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.7e+003 0.000000 0.000000 1.000000 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGCGGTG MEME-3 regular expression -------------------------------------------------------------------------------- G[AT]GCGGTG -------------------------------------------------------------------------------- Time 20.88 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCARGGC MEME-4 width = 8 sites = 4 llr = 52 E-value = 3.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCARGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a5::: pos.-specific C :aa:::38 probability G a:::5a83 matrix T :::::::: bits 3.0 *** * 2.7 *** * 2.4 *** * 2.1 *** *** Relative 1.8 *** *** Entropy 1.5 **** *** (18.6 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCCAAGGC consensus G CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCARGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23943162-23943282 100 2.36e-07 TCGCTTCGTT GCCAGGGC GAGATTAGGT chr3R:30789570-30789690 99 1.14e-06 AAACTAATTG GCCAAGGC ACACAGAGTT chr3L:9042766-9042886 37 1.14e-06 ATTATTTTTG GCCAAGGC TTAGAATATG chrX:15618029-15618149 13 2.97e-06 ACTTGCAGTT GCCAGGCG ACAATAAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCARGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23943162-23943282 2.4e-07 99_[+4]_13 chr3R:30789570-30789690 1.1e-06 98_[+4]_14 chr3L:9042766-9042886 1.1e-06 36_[+4]_76 chrX:15618029-15618149 3e-06 12_[+4]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCARGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCARGGC width=8 seqs=4 chr3R:23943162-23943282 ( 100) GCCAGGGC 1 chr3R:30789570-30789690 ( 99) GCCAAGGC 1 chr3L:9042766-9042886 ( 37) GCCAAGGC 1 chrX:15618029-15618149 ( 13) GCCAGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCARGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 3.7e+003 -865 -865 295 -865 -865 292 -865 -865 -865 292 -865 -865 143 -865 -865 -865 43 -865 195 -865 -865 -865 295 -865 -865 92 254 -865 -865 251 95 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCARGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 3.7e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.750000 0.250000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCARGGC MEME-4 regular expression -------------------------------------------------------------------------------- GCCA[AG]G[GC][CG] -------------------------------------------------------------------------------- Time 27.09 secs. ******************************************************************************** ******************************************************************************** MOTIF GGSGGCAT MEME-5 width = 8 sites = 3 llr = 40 E-value = 9.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGSGGCAT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::7: pos.-specific C ::7::a:: probability G aa3aa:3: matrix T :::::::a bits 3.0 ** *** 2.7 ** *** 2.4 ** *** 2.1 ****** Relative 1.8 ****** Entropy 1.5 ****** * (19.2 bits) 1.2 ****** * 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GGCGGCAT consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGCAT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:552570-552690 52 2.30e-07 CCAGTTTGCC GGCGGCGT TTGCCACTCG chr3L:16013353-16013473 64 8.91e-07 ACGTTATATA GGCGGCAT TAAAGTAAAA chr2L:14212826-14212946 21 1.76e-06 AAAACTAAAA GGGGGCAT CACTTTCCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGCAT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:552570-552690 2.3e-07 51_[+5]_61 chr3L:16013353-16013473 8.9e-07 63_[+5]_49 chr2L:14212826-14212946 1.8e-06 20_[+5]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGCAT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGSGGCAT width=8 seqs=3 chr2L:552570-552690 ( 52) GGCGGCGT 1 chr3L:16013353-16013473 ( 64) GGCGGCAT 1 chr2L:14212826-14212946 ( 21) GGGGGCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGCAT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0411 E= 9.1e+003 -823 -823 295 -823 -823 -823 295 -823 -823 234 137 -823 -823 -823 295 -823 -823 -823 295 -823 -823 292 -823 -823 85 -823 137 -823 -823 -823 -823 143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGCAT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 9.1e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGCAT MEME-5 regular expression -------------------------------------------------------------------------------- GG[CG]GGC[AG]T -------------------------------------------------------------------------------- Time 33.36 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23027182-23027302 9.73e-01 120 chr2L:17384550-17384670 2.22e-01 120 chr3L:7962106-7962226 2.01e-01 120 chr2R:14848342-14848462 7.42e-06 65_[+2(1.53e-06)]_47 chr2L:13640539-13640659 2.82e-03 54_[+1(7.10e-05)]_58 chrX:18207607-18207727 9.29e-01 120 chr3L:12090599-12090719 7.58e-01 120 chr3L:12090399-12090519 5.87e-04 6_[+1(1.25e-05)]_106 chr3L:15175001-15175121 2.95e-01 120 chrX:18208600-18208720 1.00e+00 120 chr2L:18919626-18919746 9.94e-01 120 chr3R:17814316-17814436 8.25e-02 120 chr3R:16801204-16801324 4.46e-01 120 chr3R:13548204-13548324 1.04e-01 120 chr2R:22403620-22403740 3.24e-05 33_[+4(6.61e-05)]_56_[+1(6.82e-05)]_\ 15 chrX:8671787-8671907 9.58e-01 120 chrX:10741090-10741210 5.62e-01 120 chr3L:5809260-5809380 2.07e-02 19_[+5(4.15e-05)]_93 chr2L:9586080-9586200 9.99e-01 120 chr3L:14961172-14961292 9.98e-01 120 chr3R:24580516-24580636 5.89e-01 120 chr3L:13403257-13403377 9.67e-01 120 chr2L:5445983-5446103 9.11e-01 120 chrX:5696132-5696252 1.62e-01 120 chr2L:10689539-10689659 1.83e-01 120 chr3L:14611481-14611601 1.00e+00 120 chr3L:13032711-13032831 9.89e-01 120 chr3L:1083448-1083568 4.94e-02 120 chrX:18523375-18523495 8.69e-01 120 chr3L:6159984-6160104 9.57e-01 120 chr3R:11198217-11198337 2.06e-03 4_[+2(1.36e-05)]_108 chrX:17471729-17471849 2.31e-04 12_[+1(9.12e-07)]_100 chr2R:14915164-14915284 1.34e-01 120 chr3L:15670554-15670674 5.08e-02 120 chr3L:7953041-7953161 3.07e-02 42_[+2(1.00e-05)]_70 chr2R:9684368-9684488 1.00e+00 120 chr2R:9684166-9684286 3.97e-01 120 chrX:15364647-15364767 2.11e-01 99_[+1(3.44e-05)]_13 chr3L:18290482-18290602 6.72e-01 120 chr2L:13876785-13876905 9.91e-01 120 chr3R:6241385-6241505 7.00e-01 120 chr3R:19343698-19343818 9.64e-01 120 chr3L:6162141-6162261 9.99e-01 120 chr3L:18102187-18102307 8.16e-01 120 chr3L:7009535-7009655 2.47e-06 27_[+3(3.00e-05)]_74_[+2(8.40e-06)]_\ 3 chr2L:18906774-18906894 5.62e-01 120 chr3L:16015958-16016078 9.49e-01 120 chr2L:20204753-20204873 4.11e-01 120 chr3L:19056947-19057067 8.98e-01 120 chr2R:20027251-20027371 1.98e-01 120 chr2R:12020602-12020722 1.92e-01 120 chrX:7706597-7706717 4.13e-01 120 chr2L:18896946-18897066 8.15e-01 120 chr3R:21347912-21348032 6.69e-02 104_[+1(4.83e-05)]_8 chr4:411392-411512 9.38e-01 120 chr3L:22130332-22130452 6.66e-01 120 chrX:17582058-17582178 6.74e-01 120 chr3L:21463024-21463144 1.52e-01 120 chr2R:12720735-12720855 9.66e-01 120 chr3L:10514975-10515095 8.83e-01 120 chrX:21045737-21045857 9.99e-01 120 chr3L:16013353-16013473 3.02e-02 63_[+5(8.91e-07)]_49 chr2L:14235117-14235237 9.93e-01 120 chr3L:18227502-18227622 6.52e-02 120 chr2L:552570-552690 6.71e-10 24_[+1(9.12e-07)]_19_[+5(2.30e-07)]_\ 4_[+2(9.09e-06)]_11_[+2(5.71e-05)]_[+1(9.53e-05)]_7_[+2(9.83e-05)]_7 chr3L:7953878-7953998 9.45e-01 120 chr3L:623681-623801 8.79e-02 120 chrX:3073717-3073837 2.73e-01 120 chr3L:110085-110205 5.82e-02 17_[+2(6.43e-05)]_95 chr2R:11803307-11803427 1.13e-02 120 chr3L:8423235-8423355 9.99e-01 120 chr3R:30734742-30734862 6.27e-02 120 chr3L:19234171-19234291 9.31e-01 120 chr3R:7646371-7646491 6.54e-01 120 chrX:18914299-18914419 9.53e-01 120 chr2L:10276584-10276704 1.12e-03 107_[+3(6.46e-07)]_5 chr3L:10849683-10849803 6.30e-01 120 chr3R:13448486-13448606 5.31e-01 120 chr3R:21535460-21535580 2.06e-02 104_[+1(2.69e-06)]_8 chr3R:16886940-16887060 6.95e-01 120 chr2R:20126665-20126785 5.59e-02 120 chr3L:14086383-14086503 6.86e-01 120 chrX:457959-458079 5.09e-02 120 chr2R:22420711-22420831 6.92e-01 120 chr3L:15199333-15199453 9.31e-01 120 chrX:8671510-8671630 2.48e-01 120 chr3L:15777514-15777634 8.86e-01 120 chr3L:1167037-1167157 9.45e-01 120 chr3L:10536433-10536553 4.05e-01 120 chr3L:804707-804827 8.58e-01 120 chr3L:11309899-11310019 9.85e-01 120 chr3R:29699338-29699458 9.20e-01 120 chrX:9615525-9615645 2.36e-01 120 chr2L:7966199-7966319 3.22e-01 120 chr3L:18229113-18229233 9.93e-01 120 chr2R:15351359-15351479 9.71e-01 120 chr3L:18795545-18795665 8.06e-01 120 chr3L:6885769-6885889 1.00e+00 120 chr2L:3439673-3439793 4.18e-01 120 chrX:7166455-7166575 9.72e-01 120 chr3L:18243297-18243417 9.75e-02 120 chr2L:4286262-4286382 5.39e-01 120 chrX:17501673-17501793 9.51e-01 120 chr3R:21594426-21594546 6.61e-01 120 chr3L:16744018-16744138 8.43e-01 120 chr2L:7293585-7293705 2.87e-02 120 chr3R:29310015-29310135 1.09e-04 24_[+1(1.73e-05)]_50_[+4(2.67e-05)]_\ 30 chr2L:3845037-3845157 8.85e-01 120 chr3L:16486602-16486722 4.50e-01 120 chr3L:18273226-18273346 2.76e-01 98_[+1(3.65e-05)]_14 chr3R:15650431-15650551 8.99e-01 120 chr2R:14971221-14971341 6.95e-02 1_[+1(3.91e-05)]_111 chr3L:3978095-3978215 6.46e-01 120 chr3L:3873192-3873312 9.10e-01 120 chr3R:14598090-14598210 8.49e-01 120 chrX:18910966-18911086 5.42e-03 15_[+1(6.41e-06)]_97 chr2R:9711954-9712074 9.57e-01 120 chr3R:27826303-27826423 4.91e-01 120 chr3L:7592255-7592375 1.86e-01 120 chr3L:6834676-6834796 4.50e-01 120 chr3R:21887639-21887759 9.89e-05 [+1(1.93e-06)]_112 chr2R:16091930-16092050 3.08e-01 120 chr3R:6674696-6674816 2.65e-01 120 chr3R:30733254-30733374 6.98e-01 120 chr3L:10337725-10337845 9.32e-03 43_[+4(6.14e-05)]_69 chr2L:5042185-5042305 9.91e-01 120 chr3L:15253731-15253851 6.22e-01 120 chr3R:10354049-10354169 6.78e-01 120 chr3L:7634864-7634984 5.67e-01 120 chr3R:21834393-21834513 5.68e-01 120 chr3L:12590264-12590384 9.04e-01 120 chr3L:1868943-1869063 8.94e-02 120 chr2R:15919825-15919945 1.15e-04 43_[+2(1.53e-06)]_69 chr3L:13227006-13227126 2.38e-02 11_[+1(5.10e-06)]_101 chr2L:14537598-14537718 6.67e-01 120 chrX:5966057-5966177 9.56e-01 120 chr3L:19073987-19074107 8.11e-01 120 chr3L:11467115-11467235 9.34e-01 120 chr3L:22910043-22910163 2.30e-01 120 chr3R:19108263-19108383 6.00e-01 120 chr2R:6219917-6220037 4.95e-02 43_[+5(4.15e-05)]_69 chr3R:23943162-23943282 1.70e-10 10_[+3(6.46e-07)]_56_[+1(1.73e-05)]_\ 17_[+4(2.36e-07)]_13 chr3L:4691912-4692032 9.22e-01 120 chr2L:14690932-14691052 9.54e-01 120 chr3L:716262-716382 9.87e-01 120 chr3R:13803989-13804109 7.40e-01 120 chr3R:16510276-16510396 8.18e-01 120 chrX:17799218-17799338 9.92e-01 120 chr3L:380950-381070 7.65e-01 120 chr3R:31689839-31689959 3.29e-01 120 chr3L:5994184-5994304 2.88e-01 120 chr2L:14212826-14212946 6.31e-03 20_[+5(1.76e-06)]_92 chrX:17780402-17780522 2.64e-01 120 chr3L:5280085-5280205 6.65e-01 120 chr3R:21830311-21830431 9.87e-01 120 chr3R:10449122-10449242 4.44e-01 120 chr3L:5630340-5630460 5.21e-01 120 chr2R:21883200-21883320 6.96e-01 120 chrX:6982241-6982361 9.72e-01 120 chr3L:15693231-15693351 7.83e-01 120 chr3R:8920242-8920362 1.49e-01 120 chr3R:14716662-14716782 7.38e-01 120 chr2L:3805396-3805516 9.43e-01 120 chr3L:3059456-3059576 3.23e-02 80_[+5(7.08e-05)]_32 chr2R:14803439-14803559 4.25e-01 120 chr2L:11341104-11341224 7.92e-01 120 chr2L:3851416-3851536 3.87e-01 120 chr3R:10626119-10626239 6.76e-01 120 chrX:8444967-8445087 7.49e-01 120 chr2L:15432396-15432516 6.69e-01 120 chr2L:18895148-18895268 9.77e-01 120 chr3L:18225084-18225204 9.76e-01 120 chr2L:7616948-7617068 2.80e-01 120 chr3L:11373978-11374098 9.98e-01 120 chr3L:17113370-17113490 1.62e-01 120 chrX:15618029-15618149 2.93e-06 [+1(5.10e-06)]_4_[+4(2.97e-06)]_100 chr2L:6819658-6819778 1.40e-01 120 chr3R:9159912-9160032 9.37e-01 120 chr3L:18272359-18272479 3.55e-01 120 chr3L:10951202-10951322 9.96e-01 120 chr3L:5952209-5952329 5.06e-01 120 chrX:12724840-12724960 9.11e-01 120 chr2L:11326524-11326644 8.92e-01 120 chr2L:14252594-14252714 9.54e-01 120 chr2L:10752350-10752470 6.14e-05 49_[+3(5.61e-05)]_63 chr3R:20950219-20950339 8.74e-01 120 chrX:12225423-12225543 9.29e-01 120 chrX:18524957-18525077 3.15e-03 6_[+3(1.29e-06)]_106 chr2L:14562360-14562480 1.00e+00 120 chr3L:10350862-10350982 1.35e-01 120 chr3R:21187972-21188092 7.55e-03 82_[+5(4.15e-05)]_30 chr3R:21420088-21420208 5.06e-01 120 chr2L:19059029-19059149 2.23e-01 50_[+5(4.91e-05)]_62 chr2R:9681930-9682050 5.20e-01 120 chr3R:13907827-13907947 7.80e-01 120 chrX:7552276-7552396 7.19e-01 120 chr3R:21206392-21206512 5.28e-01 120 chr3L:9505480-9505600 9.56e-01 120 chr3R:10636149-10636269 7.23e-01 120 chr2L:19884580-19884700 4.37e-01 120 chrX:17782150-17782270 4.22e-03 18_[+2(1.53e-06)]_94 chr3L:7861939-7862059 9.72e-01 120 chr3L:13068484-13068604 9.86e-01 120 chr2L:15442346-15442466 9.99e-01 120 chr2L:10986387-10986507 8.67e-01 120 chr2L:9996689-9996809 2.39e-01 120 chr3R:13804192-13804312 4.91e-03 68_[+4(5.34e-05)]_44 chrX:19225038-19225158 9.57e-02 12_[+2(1.00e-05)]_100 chr3R:17056991-17057111 1.79e-02 83_[+1(1.34e-05)]_29 chr3R:14386247-14386367 9.80e-01 120 chr2L:17588813-17588933 1.00e+00 120 chrX:5970334-5970454 9.77e-07 29_[+2(1.69e-05)]_8_[+1(1.34e-05)]_\ 67 chr3R:13469381-13469501 4.35e-02 120 chr3L:905152-905272 4.31e-03 95_[+4(6.14e-05)]_17 chr2L:9595007-9595127 4.91e-01 120 chr3R:23303403-23303523 5.00e-02 85_[+2(8.40e-06)]_27 chrX:18946953-18947073 6.52e-01 120 chr3R:27205138-27205258 2.39e-01 120 chr2L:18482379-18482499 2.75e-01 64_[+1(7.59e-05)]_48 chr3R:29265226-29265346 3.75e-01 120 chr2L:7295117-7295237 9.19e-02 120 chr3R:22878562-22878682 2.67e-01 120 chr3L:517375-517495 7.10e-01 120 chr3R:31704670-31704790 5.01e-01 120 chr3L:15321101-15321221 9.60e-01 120 chr3R:29581635-29581755 2.85e-01 120 chr2R:19874651-19874771 1.22e-01 120 chr2L:13640740-13640860 1.89e-01 120 chr3R:31706269-31706389 1.84e-01 120 chr2R:14305239-14305359 1.24e-02 [+1(2.80e-05)]_112 chr3R:26012943-26013063 1.00e+00 120 chr3L:19557343-19557463 9.29e-02 120 chr3R:13446602-13446722 3.19e-01 120 chr3L:9042766-9042886 7.12e-04 36_[+4(1.14e-06)]_76 chr3L:14172622-14172742 7.31e-02 120 chr3L:2651935-2652055 8.74e-01 120 chr2R:17533766-17533886 2.90e-01 120 chr3L:19338400-19338520 1.00e+00 120 chr3L:21047142-21047262 4.55e-01 120 chr2L:9206526-9206646 1.00e+00 120 chr3L:18402674-18402794 7.20e-01 120 chr3R:30789570-30789690 6.35e-05 98_[+4(1.14e-06)]_14 chr2L:3856465-3856585 3.69e-01 120 chr2L:4133170-4133290 5.57e-03 31_[+1(4.48e-05)]_81 chr3R:15652743-15652863 5.35e-01 120 chr3L:19179567-19179687 8.25e-01 120 chrX:20644080-20644200 9.49e-01 120 chrX:3396971-3397091 4.96e-02 [+1(3.65e-05)]_112 chr3R:11368867-11368987 9.99e-01 120 chr3L:15532848-15532968 6.95e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************