******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG18011.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:15467552-15467672 1.0000 120 chr3R:21731094-21731214 1.0000 120 chr2L:20957413-20957533 1.0000 120 chr3L:16388398-16388518 1.0000 120 chrX:16574253-16574373 1.0000 120 chr2R:13557510-13557630 1.0000 120 chrX:6664115-6664235 1.0000 120 chr2R:11753059-11753179 1.0000 120 chr2R:15670126-15670246 1.0000 120 chr3L:21330385-21330505 1.0000 120 chrX:9044286-9044406 1.0000 120 chr2R:10352300-10352420 1.0000 120 chr3L:17887498-17887618 1.0000 120 chr2R:17286987-17287107 1.0000 120 chr3R:16047698-16047818 1.0000 120 chr2L:16489981-16490101 1.0000 120 chrX:15910795-15910915 1.0000 120 chr2R:18950716-18950836 1.0000 120 chrX:8221283-8221403 1.0000 120 chr3R:5436800-5436920 1.0000 120 chr3R:29907717-29907837 1.0000 120 chr3R:22803667-22803787 1.0000 120 chr3L:7639658-7639778 1.0000 120 chr2L:13332284-13332404 1.0000 120 chr3L:2894251-2894371 1.0000 120 chr3L:11711909-11712029 1.0000 120 chr3R:10056104-10056224 1.0000 120 chrX:7752602-7752722 1.0000 120 chr3R:30464383-30464503 1.0000 120 chr3R:24447115-24447235 1.0000 120 chr3L:14198241-14198361 1.0000 120 chr3R:14565557-14565677 1.0000 120 chr2R:20762098-20762218 1.0000 120 chr2R:16553062-16553182 1.0000 120 chr2L:21091121-21091241 1.0000 120 chrX:20389703-20389823 1.0000 120 chr2L:13960539-13960659 1.0000 120 chr3R:7265734-7265854 1.0000 120 chr3L:19867376-19867496 1.0000 120 chrX:6725228-6725348 1.0000 120 chr2L:6566427-6566547 1.0000 120 chrX:19161126-19161246 1.0000 120 chr2L:21235644-21235764 1.0000 120 chr3R:27596109-27596229 1.0000 120 chr3R:21437677-21437797 1.0000 120 chr2R:6017020-6017140 1.0000 120 chr3L:10793353-10793473 1.0000 120 chr2L:10685864-10685984 1.0000 120 chrX:16519568-16519688 1.0000 120 chr3R:8039590-8039710 1.0000 120 chrX:19266263-19266383 1.0000 120 chr3R:15224550-15224670 1.0000 120 chr3R:7265941-7266061 1.0000 120 chr2L:16263844-16263964 1.0000 120 chr3L:13738513-13738633 1.0000 120 chr2L:12159712-12159832 1.0000 120 chr3R:26007467-26007587 1.0000 120 chr3R:31271130-31271250 1.0000 120 chrX:6119424-6119544 1.0000 120 chr2L:15118151-15118271 1.0000 120 chrX:12896849-12896969 1.0000 120 chrX:16744487-16744607 1.0000 120 chrX:11798645-11798765 1.0000 120 chrX:10929759-10929879 1.0000 120 chr3L:2894030-2894150 1.0000 120 chrX:4882805-4882925 1.0000 120 chr3L:8053385-8053505 1.0000 120 chrX:494293-494413 1.0000 120 chr2R:7477768-7477888 1.0000 120 chrX:8314794-8314914 1.0000 120 chr3R:27165522-27165642 1.0000 120 chrX:13258179-13258299 1.0000 120 chr4:905202-905322 1.0000 120 chr3R:19926382-19926502 1.0000 120 chr3R:7644485-7644605 1.0000 120 chr2L:8334911-8335031 1.0000 120 chr2L:11269482-11269602 1.0000 120 chr2R:7454490-7454610 1.0000 120 chr3R:19503217-19503337 1.0000 120 chrX:4724341-4724461 1.0000 120 chr3R:13402016-13402136 1.0000 120 chr3R:16719664-16719784 1.0000 120 chr3R:6100990-6101110 1.0000 120 chr2R:5885040-5885160 1.0000 120 chr2L:12707343-12707463 1.0000 120 chr3R:27165722-27165842 1.0000 120 chr3L:19483141-19483261 1.0000 120 chr2R:10557150-10557270 1.0000 120 chr2L:4726151-4726271 1.0000 120 chr2R:8029217-8029337 1.0000 120 chr2L:4868511-4868631 1.0000 120 chr2L:21052471-21052591 1.0000 120 chr2R:19144710-19144830 1.0000 120 chr2L:9089678-9089798 1.0000 120 chr3L:8160182-8160302 1.0000 120 chrX:10835395-10835515 1.0000 120 chrX:15486774-15486894 1.0000 120 chr2R:20542574-20542694 1.0000 120 chr3R:31264074-31264194 1.0000 120 chr3L:4554345-4554465 1.0000 120 chr3R:22536061-22536181 1.0000 120 chr2R:10687986-10688106 1.0000 120 chr3R:28677839-28677959 1.0000 120 chr2R:12403714-12403834 1.0000 120 chr3R:16730875-16730995 1.0000 120 chr2R:14002467-14002587 1.0000 120 chr3L:9211416-9211536 1.0000 120 chr2L:20098321-20098441 1.0000 120 chrX:18218926-18219046 1.0000 120 chr2R:24264957-24265077 1.0000 120 chr3L:6447181-6447301 1.0000 120 chr2L:19565363-19565483 1.0000 120 chr3R:23012244-23012364 1.0000 120 chr2L:7452219-7452339 1.0000 120 chr2R:10618210-10618330 1.0000 120 chr2R:7736016-7736136 1.0000 120 chr3R:26137207-26137327 1.0000 120 chr3R:5523633-5523753 1.0000 120 chr3R:5272746-5272866 1.0000 120 chr2R:17442680-17442800 1.0000 120 chr2R:19356455-19356575 1.0000 120 chr3R:22527860-22527980 1.0000 120 chr3L:8159143-8159263 1.0000 120 chr3R:16041044-16041164 1.0000 120 chr2L:20958134-20958254 1.0000 120 chr3L:136768-136888 1.0000 120 chr3R:24926890-24927010 1.0000 120 chr3R:29904103-29904223 1.0000 120 chr3R:6706451-6706571 1.0000 120 chrX:2933081-2933201 1.0000 120 chr3R:18731348-18731468 1.0000 120 chr3L:21540107-21540227 1.0000 120 chrX:15109143-15109263 1.0000 120 chr2R:6676202-6676322 1.0000 120 chr2R:20873346-20873466 1.0000 120 chr2R:7699504-7699624 1.0000 120 chr2R:12066354-12066474 1.0000 120 chr3R:13208588-13208708 1.0000 120 chr2R:12338177-12338297 1.0000 120 chr3R:22094111-22094231 1.0000 120 chr3R:11510279-11510399 1.0000 120 chr3L:8028770-8028890 1.0000 120 chr2R:7440851-7440971 1.0000 120 chr2R:7727191-7727311 1.0000 120 chr3R:16043140-16043260 1.0000 120 chr3L:18743770-18743890 1.0000 120 chrX:6350362-6350482 1.0000 120 chr2L:10364315-10364435 1.0000 120 chr2R:12066111-12066231 1.0000 120 chr2L:4030229-4030349 1.0000 120 chr3R:27561321-27561441 1.0000 120 chr2L:6566155-6566275 1.0000 120 chr3L:6689014-6689134 1.0000 120 chr3R:7492334-7492454 1.0000 120 chr2L:6613314-6613434 1.0000 120 chr3R:15375750-15375870 1.0000 120 chr3L:12861656-12861776 1.0000 120 chr3R:9779261-9779381 1.0000 120 chrX:4107990-4108110 1.0000 120 chr3R:17395077-17395197 1.0000 120 chr3R:5438898-5439018 1.0000 120 chrX:16840053-16840173 1.0000 120 chrX:16519769-16519889 1.0000 120 chr2R:7791376-7791496 1.0000 120 chrX:16695794-16695914 1.0000 120 chr2L:18458611-18458731 1.0000 120 chr2L:14524583-14524703 1.0000 120 chr2L:10004776-10004896 1.0000 120 chr2L:2574856-2574976 1.0000 120 chr2L:19565567-19565687 1.0000 120 chr2L:3711700-3711820 1.0000 120 chrX:15472014-15472134 1.0000 120 chr3R:10519643-10519763 1.0000 120 chr3L:1206789-1206909 1.0000 120 chr2L:2383086-2383206 1.0000 120 chrX:3931094-3931214 1.0000 120 chr2R:9369424-9369544 1.0000 120 chr2L:7181999-7182119 1.0000 120 chr2R:16837169-16837289 1.0000 120 chrX:18328735-18328855 1.0000 120 chr3R:10045517-10045637 1.0000 120 chr3R:32060962-32061082 1.0000 120 chr2R:17460457-17460577 1.0000 120 chr3L:16150977-16151097 1.0000 120 chr3R:25208673-25208793 1.0000 120 chr2L:19439972-19440092 1.0000 120 chr2R:16343826-16343946 1.0000 120 chr2R:24757143-24757263 1.0000 120 chrX:13249638-13249758 1.0000 120 chr2R:8420698-8420818 1.0000 120 chr2R:15851501-15851621 1.0000 120 chr2L:22179372-22179492 1.0000 120 chrX:21145514-21145634 1.0000 120 chr3R:7999532-7999652 1.0000 120 chr3L:17989353-17989473 1.0000 120 chrX:7678953-7679073 1.0000 120 chr3R:25627140-25627260 1.0000 120 chr3R:6708985-6709105 1.0000 120 chr2L:4661092-4661212 1.0000 120 chr3L:14391601-14391721 1.0000 120 chr3L:3810188-3810308 1.0000 120 chr2R:14860737-14860857 1.0000 120 chr2R:11473860-11473980 1.0000 120 chr2L:19363465-19363585 1.0000 120 chr2R:7735776-7735896 1.0000 120 chr2L:14348774-14348894 1.0000 120 chr3R:4350204-4350324 1.0000 120 chr2R:14858617-14858737 1.0000 120 chr2R:16070518-16070638 1.0000 120 chr2R:5693497-5693617 1.0000 120 chr4:942909-943029 1.0000 120 chr3L:6628745-6628865 1.0000 120 chr3L:1567734-1567854 1.0000 120 chr2L:378026-378146 1.0000 120 chr2R:9972780-9972900 1.0000 120 chr3R:18739860-18739980 1.0000 120 chr3R:32060374-32060494 1.0000 120 chr3R:8517758-8517878 1.0000 120 chr3R:19643078-19643198 1.0000 120 chr2R:13691478-13691598 1.0000 120 chr3R:3846686-3846806 1.0000 120 chr3R:15286130-15286250 1.0000 120 chr3R:25882085-25882205 1.0000 120 chr2R:9082029-9082149 1.0000 120 chr2R:1150935-1151055 1.0000 120 chr2R:8572721-8572841 1.0000 120 chr3L:8074013-8074133 1.0000 120 chr3R:5571130-5571250 1.0000 120 chr2R:15573907-15574027 1.0000 120 chr3R:21155930-21156050 1.0000 120 chr2L:9949246-9949366 1.0000 120 chrX:6351931-6352051 1.0000 120 chr3L:9691568-9691688 1.0000 120 chr2R:15480130-15480250 1.0000 120 chrX:3835429-3835549 1.0000 120 chrX:18704140-18704260 1.0000 120 chr3R:25652202-25652322 1.0000 120 chr3L:9220075-9220195 1.0000 120 chr2R:17469164-17469284 1.0000 120 chr3R:21140504-21140624 1.0000 120 chr3L:18106709-18106829 1.0000 120 chr3R:18301691-18301811 1.0000 120 chrX:19201801-19201921 1.0000 120 chr3R:24651036-24651156 1.0000 120 chr4:455579-455699 1.0000 120 chr2L:17784809-17784929 1.0000 120 chr3R:19491133-19491253 1.0000 120 chr2L:8709617-8709737 1.0000 120 chr3L:3788245-3788365 1.0000 120 chrX:18239440-18239560 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG18011/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG18011.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.285 C 0.211 G 0.215 T 0.289 Background letter frequencies (from file dataset with add-one prior applied): A 0.285 C 0.211 G 0.215 T 0.289 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAAAAGCT MEME-1 width = 8 sites = 88 llr = 700 E-value = 1.2e-033 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAAAGCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1889a::1 pos.-specific C 7111::a: probability G :12::a:: matrix T 1::::::9 bits 2.2 ** 2.0 ** 1.8 *** 1.6 *** Relative 1.3 ***** Entropy 1.1 ***** (11.5 bits) 0.9 ** ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAAAGCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAAGCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:18239440-18239560 52 1.83e-05 TGCTGGCTGA CAAAAGCT CGCAGGGCTG chr3R:19491133-19491253 44 1.83e-05 CACCGCTTGA CAAAAGCT GGATGCTGCC chr2L:17784809-17784929 90 1.83e-05 TGATGACTGT CAAAAGCT AAATGCGATG chr3R:25652202-25652322 60 1.83e-05 TGCTGGCGGT CAAAAGCT AGCTGCTACG chr3L:9691568-9691688 49 1.83e-05 CCCTTCCTTT CAAAAGCT CGCTGATACG chr3L:16150977-16151097 66 1.83e-05 TAGAGCGTGA CAAAAGCT GATATGTACG chr2R:17460457-17460577 29 1.83e-05 AGCATCTTGG CAAAAGCT GTTCGTTCTG chr3R:32060962-32061082 91 1.83e-05 CTTAGACAGA CAAAAGCT CTTTTAGAGT chr2R:9369424-9369544 51 1.83e-05 GAGCGTCACA CAAAAGCT TCCCCAAATG chrX:16840053-16840173 80 1.83e-05 CGCATGCGGA CAAAAGCT GTCTGGCATG chr3L:8028770-8028890 47 1.83e-05 AAGCAGTGGA CAAAAGCT TTCTGAACTT chr2R:19356455-19356575 43 1.83e-05 CGAGCACGAC CAAAAGCT TCGAGCGTTG chr2R:7736016-7736136 49 1.83e-05 TAGACACATA CAAAAGCT AGCTACTATA chr2L:20098321-20098441 63 1.83e-05 GGTGGGCAAA CAAAAGCT GGTGGCTTTG chr3R:28677839-28677959 95 1.83e-05 AGCTCAATCT CAAAAGCT TTAACGTAAT chr3L:8160182-8160302 46 1.83e-05 CGCTCGCTTT CAAAAGCT AACCGCTTTT chr2L:12707343-12707463 40 1.83e-05 CGCGGGCTGT CAAAAGCT CATAGGTATG chr3R:16719664-16719784 7 1.83e-05 ATCTTA CAAAAGCT AACATCTATA chr2L:8334911-8335031 35 1.83e-05 CACGAACTCT CAAAAGCT GATTGCTGTT chr2L:10685864-10685984 87 1.83e-05 CAATGCCTGA CAAAAGCT TCTTGCTATA chr2R:20762098-20762218 53 1.83e-05 CGAGCGCTGA CAAAAGCT GATTATTATG chr2L:13332284-13332404 53 1.83e-05 GTTAAGCAGA CAAAAGCT GCGCGCTGTG chrX:15910795-15910915 23 1.83e-05 GGCACACAGA CAAAAGCT CGCTTCCCAG chrX:16574253-16574373 50 1.83e-05 GACCGACGGA CAAAAGCT GACTGGCACA chr2L:20957413-20957533 49 1.83e-05 GCGCGGCGGC CAAAAGCT GCCAGCTACA chr2R:11473860-11473980 35 3.20e-05 GGTTAAGTGA CAGAAGCT CGACTGTATG chr3R:27561321-27561441 56 3.20e-05 TCCCAGCGAA CAGAAGCT GATTGCTAAA chr3L:2894030-2894150 1 3.20e-05 . CAGAAGCT AAGTAATATT chrX:11798645-11798765 61 3.20e-05 CCTGTGCTTA CAGAAGCT GTCTGCTGCA chr3L:19867376-19867496 57 3.20e-05 TCTGTTATGA CAGAAGCT CAGCGCTACG chr2R:15670126-15670246 55 3.20e-05 GGAACGCAGA CAGAAGCT AACTGCTCTG chr3L:136768-136888 92 4.55e-05 TCGATTAAAG CCAAAGCT GACGTTGGCG chr3R:5523633-5523753 20 4.55e-05 GTGACTGAGC CCAAAGCT TTTCCTATGG chr2L:21235644-21235764 44 4.55e-05 CAGTGGCCGA CCAAAGCT CAATATCTCT chr2L:8709617-8709737 104 5.93e-05 TTGACACTTG CGAAAGCT AATTACTGC chr3R:18301691-18301811 47 5.93e-05 ATGCGATGGA CGAAAGCT GAGTGATATG chr2L:4661092-4661212 21 5.93e-05 TAAGACGCTT CGAAAGCT TATTCGAGTT chr3R:19926382-19926502 44 5.93e-05 TCGGGCTACG CGAAAGCT GTTCAAATGG chrX:8314794-8314914 48 5.93e-05 GGAAGGCAAA CGAAAGCT GATTACTTTG chr3R:8517758-8517878 32 1.02e-04 AACTCGCGCG CAAAAGCA ACAATTAAAA chr3R:32060374-32060494 47 1.02e-04 ATCTCAGCAC CAAAAGCA GTGCGCTCTA chr2R:7735776-7735896 109 1.02e-04 AAGTCAAATT AAAAAGCT AAAC chrX:7678953-7679073 67 1.02e-04 TGGCGGTTTC AAAAAGCT TTCGATCTAG chr2L:7181999-7182119 21 1.02e-04 CGTAAATGAA AAAAAGCT GAAAGATATG chrX:16695794-16695914 93 1.02e-04 TGCAGGCTGG CAAAAGCA GAATGTCTTG chr3L:6447181-6447301 33 1.02e-04 CCTGTAAGAC AAAAAGCT GCCAGCTACT chr3R:19503217-19503337 63 1.02e-04 TATATGCGGA CAAAAGCA CGCAGCGCCA chr3R:26007467-26007587 50 1.02e-04 TGTTGATGTC AAAAAGCT GAATGCTCCG chr3R:7265941-7266061 66 1.02e-04 CAACCCACAC AAAAAGCT GCTTGCTCGT chr2R:18950716-18950836 48 1.02e-04 GAACAGCAAA CAAAAGCA AAATGCTGTG chr2R:16837169-16837289 44 1.15e-04 CTTGGCCTGA CACAAGCT GATGGCTACG chr2L:3711700-3711820 71 1.15e-04 TGATGGCTGT CACAAGCT GATTGATTTA chr3R:7492334-7492454 40 1.15e-04 AAAGTTTTTT CACAAGCT TTTAATGCGC chrX:12896849-12896969 49 1.15e-04 CACACACACG CACAAGCT GCACGATCTT chr2R:8572721-8572841 70 1.54e-04 TACTCACACT TAAAAGCT GACTAATATA chr3L:6689014-6689134 38 1.54e-04 AGCTTCCACA TAAAAGCT CCATAGCAAT chr2R:12066354-12066474 105 1.54e-04 TAGACTGAGC TAAAAGCT CAGGACCT chr3L:8159143-8159263 35 1.54e-04 TTAAAGCAGT TAAAAGCT CTATGGGAAA chrX:20389703-20389823 65 1.54e-04 AGCACAGGCC TAAAAGCT AGCTGCTATG chrX:9044286-9044406 38 1.54e-04 AAAAACTAAA TAAAAGCT CTTCAAATCG chr2R:20542574-20542694 49 1.64e-04 TGATTTCAAA CCGAAGCT AAATGCTACA chr2L:9089678-9089798 102 1.64e-04 TAAAAATGTT CCGAAGCT CTGTATTCAG chrX:494293-494413 43 2.07e-04 GCAGTGTGGA CAGAAGCA GGCTGGCGCA chr3R:19643078-19643198 102 2.67e-04 TCTTATCACG CAGCAGCT GACTGCAGTG chr2L:19439972-19440092 100 2.67e-04 ACTGGGTGGT ACAAAGCT GCGAGTATAT chr2L:10004776-10004896 63 2.67e-04 GGGCCACGAG CAGCAGCT TTTGATCGTG chr3L:9211416-9211536 31 2.67e-04 GTGTGTCTAC ACAAAGCT GACAGGTATA chrX:19161126-19161246 62 2.67e-04 tgACCGAAGC CAGCAGCT TTTGTCAACG chr2R:16553062-16553182 65 2.67e-04 GTGGCCTGAC CAGCAGCT AATTGCTACG chr3R:22803667-22803787 18 2.67e-04 GTGCCTTTGG CCAAAGCA ATGGAATGAA chr2R:11753059-11753179 38 2.67e-04 CGCGACGGGC ACAAAGCT GCGTTGACAA chr3L:16388398-16388518 58 2.67e-04 AGCTCCGCCA CAGCAGCT GGCTCCGCCA chr3R:21731094-21731214 56 2.67e-04 TCTCAGCGAC ACAAAGCT GGCAGCTGTG chrX:21145514-21145634 47 2.96e-04 GCCTCACATA CATAAGCT GTTTGCTAGG chr3R:15375750-15375870 32 2.96e-04 GTTTCATATT CATAAGCT TCcagcagca chrX:10835395-10835515 53 3.24e-04 AAAGTGGCTT TCAAAGCT GACTGCTGTG chr2L:13960539-13960659 106 3.24e-04 TTTGATCACT TCAAAGCT AATTGTT chr3R:24651036-24651156 56 3.57e-04 GCTCAGTGGT AGAAAGCT AAATGAATTA chr2L:22179372-22179492 38 3.57e-04 AACTTAAAAG CGAAAGCA ATGTAATGTG chr3R:5272746-5272866 44 3.57e-04 ATATCTGCGA AGAAAGCT TACAACTACA chr2L:14348774-14348894 48 4.52e-04 GTGGGCCAAC TGAAAGCT GGAGTATACG chr2R:7727191-7727311 3 4.52e-04 TT CACAAGCA GAAATCCATC chr3R:13208588-13208708 63 5.08e-04 ACACCAATTC AAACAGCT TTTGTCAGGC chr2R:10687986-10688106 68 5.08e-04 GGGATATAAG TAAAAGCA TCTGACATTT chr2L:6566427-6566547 88 5.08e-04 GCAATCGCCA CAACAGCA ATTGGAAAAA chr2L:21052471-21052591 76 5.55e-04 TTCGGTCCCT TACAAGCT CTGACGGCTA chrX:4882805-4882925 53 5.55e-04 CATGTATGAC GAAAAGCT GCTTGCTGCG chr2L:9949246-9949366 14 5.92e-04 GCGTACTAAA CAATAGCT Gattgatata -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAAGCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:18239440-18239560 1.8e-05 51_[+1]_61 chr3R:19491133-19491253 1.8e-05 43_[+1]_69 chr2L:17784809-17784929 1.8e-05 89_[+1]_23 chr3R:25652202-25652322 1.8e-05 59_[+1]_53 chr3L:9691568-9691688 1.8e-05 48_[+1]_64 chr3L:16150977-16151097 1.8e-05 65_[+1]_47 chr2R:17460457-17460577 1.8e-05 28_[+1]_84 chr3R:32060962-32061082 1.8e-05 90_[+1]_22 chr2R:9369424-9369544 1.8e-05 50_[+1]_62 chrX:16840053-16840173 1.8e-05 79_[+1]_33 chr3L:8028770-8028890 1.8e-05 46_[+1]_66 chr2R:19356455-19356575 1.8e-05 42_[+1]_70 chr2R:7736016-7736136 1.8e-05 48_[+1]_64 chr2L:20098321-20098441 1.8e-05 62_[+1]_50 chr3R:28677839-28677959 1.8e-05 94_[+1]_18 chr3L:8160182-8160302 1.8e-05 45_[+1]_67 chr2L:12707343-12707463 1.8e-05 39_[+1]_73 chr3R:16719664-16719784 1.8e-05 6_[+1]_106 chr2L:8334911-8335031 1.8e-05 34_[+1]_78 chr2L:10685864-10685984 1.8e-05 86_[+1]_26 chr2R:20762098-20762218 1.8e-05 52_[+1]_60 chr2L:13332284-13332404 1.8e-05 52_[+1]_60 chrX:15910795-15910915 1.8e-05 22_[+1]_90 chrX:16574253-16574373 1.8e-05 49_[+1]_63 chr2L:20957413-20957533 1.8e-05 48_[+1]_64 chr2R:11473860-11473980 3.2e-05 34_[+1]_78 chr3R:27561321-27561441 3.2e-05 55_[+1]_57 chr3L:2894030-2894150 3.2e-05 [+1]_112 chrX:11798645-11798765 3.2e-05 60_[+1]_52 chr3L:19867376-19867496 3.2e-05 56_[+1]_56 chr2R:15670126-15670246 3.2e-05 54_[+1]_58 chr3L:136768-136888 4.6e-05 91_[+1]_21 chr3R:5523633-5523753 4.6e-05 19_[+1]_93 chr2L:21235644-21235764 4.6e-05 43_[+1]_69 chr2L:8709617-8709737 5.9e-05 103_[+1]_9 chr3R:18301691-18301811 5.9e-05 46_[+1]_66 chr2L:4661092-4661212 5.9e-05 20_[+1]_92 chr3R:19926382-19926502 5.9e-05 43_[+1]_69 chrX:8314794-8314914 5.9e-05 47_[+1]_65 chr3R:8517758-8517878 0.0001 31_[+1]_81 chr3R:32060374-32060494 0.0001 46_[+1]_66 chr2R:7735776-7735896 0.0001 108_[+1]_4 chrX:7678953-7679073 0.0001 66_[+1]_46 chr2L:7181999-7182119 0.0001 20_[+1]_92 chrX:16695794-16695914 0.0001 92_[+1]_20 chr3L:6447181-6447301 0.0001 32_[+1]_80 chr3R:19503217-19503337 0.0001 62_[+1]_50 chr3R:26007467-26007587 0.0001 49_[+1]_63 chr3R:7265941-7266061 0.0001 65_[+1]_47 chr2R:18950716-18950836 0.0001 47_[+1]_65 chr2R:16837169-16837289 0.00012 43_[+1]_69 chr2L:3711700-3711820 0.00012 70_[+1]_42 chr3R:7492334-7492454 0.00012 39_[+1]_73 chrX:12896849-12896969 0.00012 48_[+1]_64 chr2R:8572721-8572841 0.00015 69_[+1]_43 chr3L:6689014-6689134 0.00015 37_[+1]_75 chr2R:12066354-12066474 0.00015 104_[+1]_8 chr3L:8159143-8159263 0.00015 34_[+1]_78 chrX:20389703-20389823 0.00015 64_[+1]_48 chrX:9044286-9044406 0.00015 37_[+1]_75 chr2R:20542574-20542694 0.00016 48_[+1]_64 chr2L:9089678-9089798 0.00016 101_[+1]_11 chrX:494293-494413 0.00021 42_[+1]_70 chr3R:19643078-19643198 0.00027 101_[+1]_11 chr2L:19439972-19440092 0.00027 99_[+1]_13 chr2L:10004776-10004896 0.00027 62_[+1]_50 chr3L:9211416-9211536 0.00027 30_[+1]_82 chrX:19161126-19161246 0.00027 61_[+1]_51 chr2R:16553062-16553182 0.00027 64_[+1]_48 chr3R:22803667-22803787 0.00027 17_[+1]_95 chr2R:11753059-11753179 0.00027 37_[+1]_75 chr3L:16388398-16388518 0.00027 57_[+1]_55 chr3R:21731094-21731214 0.00027 55_[+1]_57 chrX:21145514-21145634 0.0003 46_[+1]_66 chr3R:15375750-15375870 0.0003 31_[+1]_81 chrX:10835395-10835515 0.00032 52_[+1]_60 chr2L:13960539-13960659 0.00032 105_[+1]_7 chr3R:24651036-24651156 0.00036 55_[+1]_57 chr2L:22179372-22179492 0.00036 37_[+1]_75 chr3R:5272746-5272866 0.00036 43_[+1]_69 chr2L:14348774-14348894 0.00045 47_[+1]_65 chr2R:7727191-7727311 0.00045 2_[+1]_110 chr3R:13208588-13208708 0.00051 62_[+1]_50 chr2R:10687986-10688106 0.00051 67_[+1]_45 chr2L:6566427-6566547 0.00051 87_[+1]_25 chr2L:21052471-21052591 0.00056 75_[+1]_37 chrX:4882805-4882925 0.00056 52_[+1]_60 chr2L:9949246-9949366 0.00059 13_[+1]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAAGCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAAAGCT width=8 seqs=88 chrX:18239440-18239560 ( 52) CAAAAGCT 1 chr3R:19491133-19491253 ( 44) CAAAAGCT 1 chr2L:17784809-17784929 ( 90) CAAAAGCT 1 chr3R:25652202-25652322 ( 60) CAAAAGCT 1 chr3L:9691568-9691688 ( 49) CAAAAGCT 1 chr3L:16150977-16151097 ( 66) CAAAAGCT 1 chr2R:17460457-17460577 ( 29) CAAAAGCT 1 chr3R:32060962-32061082 ( 91) CAAAAGCT 1 chr2R:9369424-9369544 ( 51) CAAAAGCT 1 chrX:16840053-16840173 ( 80) CAAAAGCT 1 chr3L:8028770-8028890 ( 47) CAAAAGCT 1 chr2R:19356455-19356575 ( 43) CAAAAGCT 1 chr2R:7736016-7736136 ( 49) CAAAAGCT 1 chr2L:20098321-20098441 ( 63) CAAAAGCT 1 chr3R:28677839-28677959 ( 95) CAAAAGCT 1 chr3L:8160182-8160302 ( 46) CAAAAGCT 1 chr2L:12707343-12707463 ( 40) CAAAAGCT 1 chr3R:16719664-16719784 ( 7) CAAAAGCT 1 chr2L:8334911-8335031 ( 35) CAAAAGCT 1 chr2L:10685864-10685984 ( 87) CAAAAGCT 1 chr2R:20762098-20762218 ( 53) CAAAAGCT 1 chr2L:13332284-13332404 ( 53) CAAAAGCT 1 chrX:15910795-15910915 ( 23) CAAAAGCT 1 chrX:16574253-16574373 ( 50) CAAAAGCT 1 chr2L:20957413-20957533 ( 49) CAAAAGCT 1 chr2R:11473860-11473980 ( 35) CAGAAGCT 1 chr3R:27561321-27561441 ( 56) CAGAAGCT 1 chr3L:2894030-2894150 ( 1) CAGAAGCT 1 chrX:11798645-11798765 ( 61) CAGAAGCT 1 chr3L:19867376-19867496 ( 57) CAGAAGCT 1 chr2R:15670126-15670246 ( 55) CAGAAGCT 1 chr3L:136768-136888 ( 92) CCAAAGCT 1 chr3R:5523633-5523753 ( 20) CCAAAGCT 1 chr2L:21235644-21235764 ( 44) CCAAAGCT 1 chr2L:8709617-8709737 ( 104) CGAAAGCT 1 chr3R:18301691-18301811 ( 47) CGAAAGCT 1 chr2L:4661092-4661212 ( 21) CGAAAGCT 1 chr3R:19926382-19926502 ( 44) CGAAAGCT 1 chrX:8314794-8314914 ( 48) CGAAAGCT 1 chr3R:8517758-8517878 ( 32) CAAAAGCA 1 chr3R:32060374-32060494 ( 47) CAAAAGCA 1 chr2R:7735776-7735896 ( 109) AAAAAGCT 1 chrX:7678953-7679073 ( 67) AAAAAGCT 1 chr2L:7181999-7182119 ( 21) AAAAAGCT 1 chrX:16695794-16695914 ( 93) CAAAAGCA 1 chr3L:6447181-6447301 ( 33) AAAAAGCT 1 chr3R:19503217-19503337 ( 63) CAAAAGCA 1 chr3R:26007467-26007587 ( 50) AAAAAGCT 1 chr3R:7265941-7266061 ( 66) AAAAAGCT 1 chr2R:18950716-18950836 ( 48) CAAAAGCA 1 chr2R:16837169-16837289 ( 44) CACAAGCT 1 chr2L:3711700-3711820 ( 71) CACAAGCT 1 chr3R:7492334-7492454 ( 40) CACAAGCT 1 chrX:12896849-12896969 ( 49) CACAAGCT 1 chr2R:8572721-8572841 ( 70) TAAAAGCT 1 chr3L:6689014-6689134 ( 38) TAAAAGCT 1 chr2R:12066354-12066474 ( 105) TAAAAGCT 1 chr3L:8159143-8159263 ( 35) TAAAAGCT 1 chrX:20389703-20389823 ( 65) TAAAAGCT 1 chrX:9044286-9044406 ( 38) TAAAAGCT 1 chr2R:20542574-20542694 ( 49) CCGAAGCT 1 chr2L:9089678-9089798 ( 102) CCGAAGCT 1 chrX:494293-494413 ( 43) CAGAAGCA 1 chr3R:19643078-19643198 ( 102) CAGCAGCT 1 chr2L:19439972-19440092 ( 100) ACAAAGCT 1 chr2L:10004776-10004896 ( 63) CAGCAGCT 1 chr3L:9211416-9211536 ( 31) ACAAAGCT 1 chrX:19161126-19161246 ( 62) CAGCAGCT 1 chr2R:16553062-16553182 ( 65) CAGCAGCT 1 chr3R:22803667-22803787 ( 18) CCAAAGCA 1 chr2R:11753059-11753179 ( 38) ACAAAGCT 1 chr3L:16388398-16388518 ( 58) CAGCAGCT 1 chr3R:21731094-21731214 ( 56) ACAAAGCT 1 chrX:21145514-21145634 ( 47) CATAAGCT 1 chr3R:15375750-15375870 ( 32) CATAAGCT 1 chrX:10835395-10835515 ( 53) TCAAAGCT 1 chr2L:13960539-13960659 ( 106) TCAAAGCT 1 chr3R:24651036-24651156 ( 56) AGAAAGCT 1 chr2L:22179372-22179492 ( 38) CGAAAGCA 1 chr3R:5272746-5272866 ( 44) AGAAAGCT 1 chr2L:14348774-14348894 ( 48) TGAAAGCT 1 chr2R:7727191-7727311 ( 3) CACAAGCA 1 chr3R:13208588-13208708 ( 63) AAACAGCT 1 chr2R:10687986-10688106 ( 68) TAAAAGCA 1 chr2L:6566427-6566547 ( 88) CAACAGCA 1 chr2L:21052471-21052591 ( 76) TACAAGCT 1 chrX:4882805-4882925 ( 53) GAAAAGCT 1 chr2L:9949246-9949366 ( 14) CAATAGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAAGCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.3508 E= 1.2e-033 -95 176 -424 -121 142 -63 -107 -1310 140 -163 -44 -367 167 -141 -1310 -467 181 -1310 -1310 -1310 -1310 -1310 222 -1310 -1310 225 -1310 -1310 -119 -1310 -1310 160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAAGCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 88 E= 1.2e-033 0.147727 0.715909 0.011364 0.125000 0.761364 0.136364 0.102273 0.000000 0.750000 0.068182 0.159091 0.022727 0.909091 0.079545 0.000000 0.011364 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.000000 0.000000 0.875000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAAGCT MEME-1 regular expression -------------------------------------------------------------------------------- CAAAAGCT -------------------------------------------------------------------------------- Time 7.43 secs. ******************************************************************************** ******************************************************************************** MOTIF AGCTTTTG MEME-2 width = 8 sites = 67 llr = 555 E-value = 4.6e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGCTTTTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 91:::::: pos.-specific C :1a:::11 probability G :8:::::8 matrix T :::aaa81 bits 2.2 2.0 * 1.8 *** 1.6 **** Relative 1.3 * **** * Entropy 1.1 ******** (11.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGCTTTTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTTTTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19201801-19201921 77 1.94e-05 ATATACCGTT AGCTTTTG TTATTACCGT chr2R:13691478-13691598 76 1.94e-05 TGTGTCATTT AGCTTTTG TCTCACGCGT chr3R:7999532-7999652 48 1.94e-05 TGCAGCAAGT AGCTTTTG TAAGACTTCG chr2R:15851501-15851621 106 1.94e-05 ACTGTCTTTT AGCTTTTG CGCCATT chr3L:1206789-1206909 44 1.94e-05 CGTAGCAGGC AGCTTTTG TCAGAGGTTG chr3R:10519643-10519763 60 1.94e-05 CGCACTGGTC AGCTTTTG GTCGTTAGCT chr3R:27561321-27561441 2 1.94e-05 C AGCTTTTG TGGCTCGGCA chr2L:10364315-10364435 55 1.94e-05 CCAGCTAGCT AGCTTTTG TTTGCATCTT chr3L:18743770-18743890 19 1.94e-05 TATATCATTA AGCTTTTG TAAGATGTTC chr3R:22094111-22094231 75 1.94e-05 ACACCGACGA AGCTTTTG GAAGCCCATC chrX:15109143-15109263 57 1.94e-05 CGTAGCATTT AGCTTTTG TTtgcctgcc chr3R:26137207-26137327 22 1.94e-05 CAGGCTAGTA AGCTTTTG AAAGCCTTGA chrX:18218926-18219046 69 1.94e-05 CGAACAAAGC AGCTTTTG GCTGTCTGTC chr3L:4554345-4554465 26 1.94e-05 TGCAGCAATC AGCTTTTG CTATGCTTCT chr2L:4726151-4726271 57 1.94e-05 CATACCATTC AGCTTTTG CGTGCTTACC chr2L:11269482-11269602 69 1.94e-05 CAATCCCCTC AGCTTTTG TCTGTCTGTA chr3R:31271130-31271250 64 1.94e-05 TGTGCCAGCG AGCTTTTG TCTGTGTGTG chr2L:12159712-12159832 30 1.94e-05 CAAAAATATT AGCTTTTG ACAGTCACCG chr3R:27596109-27596229 71 1.94e-05 TGCGCATTTG AGCTTTTG CAAGTCTTCG chr3R:7265734-7265854 77 1.94e-05 CTGAACCGGG AGCTTTTG AGTGTTTGCA chrX:7752602-7752722 64 1.94e-05 CCCGGCAGGC AGCTTTTG TCAGCCAGCA chr3R:22803667-22803787 47 1.94e-05 CGTAGCCATC AGCTTTTG TCCAGCACTT chr3R:29907717-29907837 86 1.94e-05 TAGTTAAACG AGCTTTTG TGACTGGAAC chr3R:25652202-25652322 100 3.35e-05 GTTACGACGA AGCTTTCG TTACCCTCTA chr3L:6689014-6689134 10 3.35e-05 AAAGACAAT AGCTTTCG ATAAAAGATA chr2R:10557150-10557270 76 3.35e-05 CATAGCAACC AGCTTTCG CTGGGCTCGC chr3L:19483141-19483261 43 3.35e-05 CATAACAGCA AGCTTTCG TAAGCCAGCA chr3R:14565557-14565677 70 3.35e-05 TGTACCGATC AGCTTTCG ATCAACGCGA chr2L:8709617-8709737 87 5.96e-05 TGGATTGCCA AGCTTTTT TGACACTTGC chr2L:22179372-22179492 82 5.96e-05 GCGAGCGACT AGCTTTTT AGAGATATGT chr2R:7727191-7727311 62 5.96e-05 CCTAGCACTC AGCTTTTT GTCAGCTAGC chr3R:29904103-29904223 92 5.96e-05 CGTAGGAGCC AGCTTTTT TCACTTGACT chr3R:28677839-28677959 39 5.96e-05 CTTATACATA AGCTTTTT ATTGAATTCA chr4:942909-943029 88 9.77e-05 TACAACAATT ACCTTTTG AACGTATCAT chrX:13249638-13249758 109 9.77e-05 CACGTGCCAT AGCTTTTC GAAG chr2L:2574856-2574976 18 9.77e-05 GATAGCTCGT ACCTTTTG TAAGGCTGTT chr2L:14524583-14524703 86 9.77e-05 TGTAGCTGCC ACCTTTTG GCCTCATGGA chrX:2933081-2933201 64 9.77e-05 TGTAGCGCCT AGCTTTTC AAAGTATTTA chr2R:7736016-7736136 75 9.77e-05 TAAAGCTCAA AGCTTTTC GAAACTTTCT chr3R:6100990-6101110 56 9.77e-05 CGTAGCAGCC AGCTTTTC GCTTGCTGCG chr3R:24447115-24447235 90 9.77e-05 ATTTGCAGGC ACCTTTTG TCCGGCAGCG chr2R:19144710-19144830 73 1.12e-04 CGTATCATTC AGCTTTGG GCTCAAGCGG chr2L:21235644-21235764 111 1.12e-04 CTTAAATGAG AGCTTTGG GG chr2R:15670126-15670246 11 1.12e-04 CCAGAGTTTA AGCTTTGG TAATTAATTC chr3R:9779261-9779381 103 1.27e-04 GTTGCATAAA GGCTTTTG ATGCGGACTT chrX:494293-494413 101 1.27e-04 CCTGCTTTTA GGCTTTTG GTCTATTAAA chr2L:16489981-16490101 83 1.27e-04 CATTTGACAA GGCTTTTG GGTGCTACCG chr3R:6708985-6709105 76 1.52e-04 CTCTTCGGCT AACTTTTG TCGAAGACCA chr2R:17460457-17460577 109 1.52e-04 GCCCCGGTGA AACTTTTG CCCC chrX:13258179-13258299 45 1.52e-04 TATTGCATCG AACTTTTG ACATCGAACC chr3L:11711909-11712029 87 1.52e-04 CCGAGCAATA AACTTTTG ATCGTATTTG chr2L:4661092-4661212 52 1.72e-04 TGACTCGCTT TGCTTTTG ATGTTTGTCC chr3L:136768-136888 61 1.72e-04 TGTAGCTCCT TGCTTTTG TTTTGCTTGT chr3L:17887498-17887618 42 1.72e-04 cggttggttt tgcttttg cACGATTATT chr3R:24651036-24651156 73 2.13e-04 TAAATGAATT ATCTTTTG GCGGCCAAAT chr2R:8420698-8420818 47 2.13e-04 TATGGCAGTC AGCTTGTG CAAGAGACAT chr3R:27165722-27165842 30 2.13e-04 TTGCGATCCC ATCTTTTG TTTTTTAAGA chr3R:13402016-13402136 70 2.13e-04 TTTATATTGG ATCTTTTG AGTATCACAA chrX:16519568-16519688 48 2.13e-04 CATAGCAGGC AGCTTGTG GCTACGATCA chr3L:3810188-3810308 71 2.51e-04 TCTAATCGAT AGCTTTCT TATCGCTTTT chrX:16519769-16519889 52 2.51e-04 TGTAGCAAAT AGCTTTCT TGCTTTAACT chr3L:9211416-9211536 84 2.51e-04 TATAGCACTC AGGTTTTG AGTTCGAATG chr3R:31264074-31264194 10 2.51e-04 AAAGAAAAA AGGTTTTG TGAGTAATGA chr3R:7644485-7644605 60 2.51e-04 TATAGCTGAC AGCTTTCT CTAGCCTAAG chrX:3931094-3931214 96 2.79e-04 GCCAGCCGTG AGCTTTCC AGCCAGCAAT chr2R:7791376-7791496 68 2.79e-04 TATGTGTATG ACCTTTCG TGACCTTGGT chrX:19266263-19266383 54 2.93e-04 CATAACCGAG AGCTTCTG CTTGTCAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTTTTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19201801-19201921 1.9e-05 76_[+2]_36 chr2R:13691478-13691598 1.9e-05 75_[+2]_37 chr3R:7999532-7999652 1.9e-05 47_[+2]_65 chr2R:15851501-15851621 1.9e-05 105_[+2]_7 chr3L:1206789-1206909 1.9e-05 43_[+2]_69 chr3R:10519643-10519763 1.9e-05 59_[+2]_53 chr3R:27561321-27561441 1.9e-05 1_[+2]_111 chr2L:10364315-10364435 1.9e-05 54_[+2]_58 chr3L:18743770-18743890 1.9e-05 18_[+2]_94 chr3R:22094111-22094231 1.9e-05 74_[+2]_38 chrX:15109143-15109263 1.9e-05 56_[+2]_56 chr3R:26137207-26137327 1.9e-05 21_[+2]_91 chrX:18218926-18219046 1.9e-05 68_[+2]_44 chr3L:4554345-4554465 1.9e-05 25_[+2]_87 chr2L:4726151-4726271 1.9e-05 56_[+2]_56 chr2L:11269482-11269602 1.9e-05 68_[+2]_44 chr3R:31271130-31271250 1.9e-05 63_[+2]_49 chr2L:12159712-12159832 1.9e-05 29_[+2]_83 chr3R:27596109-27596229 1.9e-05 70_[+2]_42 chr3R:7265734-7265854 1.9e-05 76_[+2]_36 chrX:7752602-7752722 1.9e-05 63_[+2]_49 chr3R:22803667-22803787 1.9e-05 46_[+2]_66 chr3R:29907717-29907837 1.9e-05 85_[+2]_27 chr3R:25652202-25652322 3.4e-05 99_[+2]_13 chr3L:6689014-6689134 3.4e-05 9_[+2]_103 chr2R:10557150-10557270 3.4e-05 75_[+2]_37 chr3L:19483141-19483261 3.4e-05 42_[+2]_70 chr3R:14565557-14565677 3.4e-05 69_[+2]_43 chr2L:8709617-8709737 6e-05 86_[+2]_26 chr2L:22179372-22179492 6e-05 81_[+2]_31 chr2R:7727191-7727311 6e-05 61_[+2]_51 chr3R:29904103-29904223 6e-05 91_[+2]_21 chr3R:28677839-28677959 6e-05 38_[+2]_74 chr4:942909-943029 9.8e-05 87_[+2]_25 chrX:13249638-13249758 9.8e-05 108_[+2]_4 chr2L:2574856-2574976 9.8e-05 17_[+2]_95 chr2L:14524583-14524703 9.8e-05 85_[+2]_27 chrX:2933081-2933201 9.8e-05 63_[+2]_49 chr2R:7736016-7736136 9.8e-05 74_[+2]_38 chr3R:6100990-6101110 9.8e-05 55_[+2]_57 chr3R:24447115-24447235 9.8e-05 89_[+2]_23 chr2R:19144710-19144830 0.00011 72_[+2]_40 chr2L:21235644-21235764 0.00011 110_[+2]_2 chr2R:15670126-15670246 0.00011 10_[+2]_102 chr3R:9779261-9779381 0.00013 102_[+2]_10 chrX:494293-494413 0.00013 100_[+2]_12 chr2L:16489981-16490101 0.00013 82_[+2]_30 chr3R:6708985-6709105 0.00015 75_[+2]_37 chr2R:17460457-17460577 0.00015 108_[+2]_4 chrX:13258179-13258299 0.00015 44_[+2]_68 chr3L:11711909-11712029 0.00015 86_[+2]_26 chr2L:4661092-4661212 0.00017 51_[+2]_61 chr3L:136768-136888 0.00017 60_[+2]_52 chr3L:17887498-17887618 0.00017 41_[+2]_71 chr3R:24651036-24651156 0.00021 72_[+2]_40 chr2R:8420698-8420818 0.00021 46_[+2]_66 chr3R:27165722-27165842 0.00021 29_[+2]_83 chr3R:13402016-13402136 0.00021 69_[+2]_43 chrX:16519568-16519688 0.00021 47_[+2]_65 chr3L:3810188-3810308 0.00025 70_[+2]_42 chrX:16519769-16519889 0.00025 51_[+2]_61 chr3L:9211416-9211536 0.00025 83_[+2]_29 chr3R:31264074-31264194 0.00025 9_[+2]_103 chr3R:7644485-7644605 0.00025 59_[+2]_53 chrX:3931094-3931214 0.00028 95_[+2]_17 chr2R:7791376-7791496 0.00028 67_[+2]_45 chrX:19266263-19266383 0.00029 53_[+2]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTTTTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGCTTTTG width=8 seqs=67 chrX:19201801-19201921 ( 77) AGCTTTTG 1 chr2R:13691478-13691598 ( 76) AGCTTTTG 1 chr3R:7999532-7999652 ( 48) AGCTTTTG 1 chr2R:15851501-15851621 ( 106) AGCTTTTG 1 chr3L:1206789-1206909 ( 44) AGCTTTTG 1 chr3R:10519643-10519763 ( 60) AGCTTTTG 1 chr3R:27561321-27561441 ( 2) AGCTTTTG 1 chr2L:10364315-10364435 ( 55) AGCTTTTG 1 chr3L:18743770-18743890 ( 19) AGCTTTTG 1 chr3R:22094111-22094231 ( 75) AGCTTTTG 1 chrX:15109143-15109263 ( 57) AGCTTTTG 1 chr3R:26137207-26137327 ( 22) AGCTTTTG 1 chrX:18218926-18219046 ( 69) AGCTTTTG 1 chr3L:4554345-4554465 ( 26) AGCTTTTG 1 chr2L:4726151-4726271 ( 57) AGCTTTTG 1 chr2L:11269482-11269602 ( 69) AGCTTTTG 1 chr3R:31271130-31271250 ( 64) AGCTTTTG 1 chr2L:12159712-12159832 ( 30) AGCTTTTG 1 chr3R:27596109-27596229 ( 71) AGCTTTTG 1 chr3R:7265734-7265854 ( 77) AGCTTTTG 1 chrX:7752602-7752722 ( 64) AGCTTTTG 1 chr3R:22803667-22803787 ( 47) AGCTTTTG 1 chr3R:29907717-29907837 ( 86) AGCTTTTG 1 chr3R:25652202-25652322 ( 100) AGCTTTCG 1 chr3L:6689014-6689134 ( 10) AGCTTTCG 1 chr2R:10557150-10557270 ( 76) AGCTTTCG 1 chr3L:19483141-19483261 ( 43) AGCTTTCG 1 chr3R:14565557-14565677 ( 70) AGCTTTCG 1 chr2L:8709617-8709737 ( 87) AGCTTTTT 1 chr2L:22179372-22179492 ( 82) AGCTTTTT 1 chr2R:7727191-7727311 ( 62) AGCTTTTT 1 chr3R:29904103-29904223 ( 92) AGCTTTTT 1 chr3R:28677839-28677959 ( 39) AGCTTTTT 1 chr4:942909-943029 ( 88) ACCTTTTG 1 chrX:13249638-13249758 ( 109) AGCTTTTC 1 chr2L:2574856-2574976 ( 18) ACCTTTTG 1 chr2L:14524583-14524703 ( 86) ACCTTTTG 1 chrX:2933081-2933201 ( 64) AGCTTTTC 1 chr2R:7736016-7736136 ( 75) AGCTTTTC 1 chr3R:6100990-6101110 ( 56) AGCTTTTC 1 chr3R:24447115-24447235 ( 90) ACCTTTTG 1 chr2R:19144710-19144830 ( 73) AGCTTTGG 1 chr2L:21235644-21235764 ( 111) AGCTTTGG 1 chr2R:15670126-15670246 ( 11) AGCTTTGG 1 chr3R:9779261-9779381 ( 103) GGCTTTTG 1 chrX:494293-494413 ( 101) GGCTTTTG 1 chr2L:16489981-16490101 ( 83) GGCTTTTG 1 chr3R:6708985-6709105 ( 76) AACTTTTG 1 chr2R:17460457-17460577 ( 109) AACTTTTG 1 chrX:13258179-13258299 ( 45) AACTTTTG 1 chr3L:11711909-11712029 ( 87) AACTTTTG 1 chr2L:4661092-4661212 ( 52) TGCTTTTG 1 chr3L:136768-136888 ( 61) TGCTTTTG 1 chr3L:17887498-17887618 ( 42) TGCTTTTG 1 chr3R:24651036-24651156 ( 73) ATCTTTTG 1 chr2R:8420698-8420818 ( 47) AGCTTGTG 1 chr3R:27165722-27165842 ( 30) ATCTTTTG 1 chr3R:13402016-13402136 ( 70) ATCTTTTG 1 chrX:16519568-16519688 ( 48) AGCTTGTG 1 chr3L:3810188-3810308 ( 71) AGCTTTCT 1 chrX:16519769-16519889 ( 52) AGCTTTCT 1 chr3L:9211416-9211536 ( 84) AGGTTTTG 1 chr3R:31264074-31264194 ( 10) AGGTTTTG 1 chr3R:7644485-7644605 ( 60) AGCTTTCT 1 chrX:3931094-3931214 ( 96) AGCTTTCC 1 chr2R:7791376-7791496 ( 68) ACCTTTCG 1 chrX:19266263-19266383 ( 54) AGCTTCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTTTTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.49857 E= 4.6e-023 168 -1271 -226 -269 -225 -150 193 -269 -1271 220 -285 -1271 -1271 -1271 -1271 179 -1271 -1271 -1271 179 -1271 -382 -285 172 -1271 -50 -226 148 -1271 -150 190 -128 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTTTTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 67 E= 4.6e-023 0.910448 0.000000 0.044776 0.044776 0.059701 0.074627 0.820896 0.044776 0.000000 0.970149 0.029851 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.014925 0.029851 0.955224 0.000000 0.149254 0.044776 0.805970 0.000000 0.074627 0.805970 0.119403 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCTTTTG MEME-2 regular expression -------------------------------------------------------------------------------- AGCTTTTG -------------------------------------------------------------------------------- Time 13.58 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGYCAGC MEME-3 width = 8 sites = 45 llr = 383 E-value = 9.7e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGYCAGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :8:::a:: pos.-specific C a::37::9 probability G ::823:a: matrix T :225:::1 bits 2.2 * * 2.0 * * 1.8 * ** 1.6 * * *** Relative 1.3 * * **** Entropy 1.1 * * **** (12.3 bits) 0.9 *** **** 0.7 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGTCAGC consensus T CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGYCAGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:15286130-15286250 48 1.02e-05 TCAAACAGAG CAGTCAGC AATTGAAACG chr3L:8028770-8028890 24 1.02e-05 AGAAAATGCT CAGTCAGC TGATGAAGCA chrX:10929759-10929879 62 1.02e-05 AGTTTCATAT CAGTCAGC TTCGCTTTTA chr3L:13738513-13738633 63 1.02e-05 AGTCTGAAGT CAGTCAGC TGCCAGTGCC chrX:6664115-6664235 34 1.02e-05 AAACTCATAT CAGTCAGC CGCACATCCT chr2R:20873346-20873466 46 1.76e-05 TTATGCCCGG CAGCCAGC AACAGGCTGC chr2L:7452219-7452339 70 1.76e-05 CAGCTCATGT CAGCCAGC AACACAGTCA chr3R:23012244-23012364 96 1.76e-05 TTcagccagc cagccagc cagccagcca chrX:18218926-18219046 86 1.76e-05 GGCTGTCTGT CAGCCAGC TAGGTCAACT chrX:7752602-7752722 73 1.76e-05 CAGCTTTTGT CAGCCAGC ATAATGAAAT chr2R:15480130-15480250 45 2.52e-05 AGTCGCGCAG CAGGCAGC TTCTATCCAC chr2R:1150935-1151055 110 3.56e-05 tagcccgtgt cagtgagc ata chr3R:3846686-3846806 70 3.56e-05 GGTCTTATAA CAGTGAGC TATACCACAC chr2L:4726151-4726271 24 3.56e-05 ACCGCGATAG CAGTGAGC TTTTCAATTG chr3L:3810188-3810308 52 5.35e-05 CTTACTGTAC CAGCGAGC TTCTAATCGA chr3R:18731348-18731468 79 5.35e-05 TATACCCCTA CTGTCAGC GAATTATGGC chr2R:19356455-19356575 30 5.35e-05 TGTTCCTAGG CAGCGAGC ACGACCAAAA chr4:905202-905322 64 5.35e-05 AATATTATAG CTGTCAGC CGCCAGCAAT chrX:6725228-6725348 74 5.35e-05 CGTTGTGTAG CTGTCAGC ATTCGTCACT chr2L:16489981-16490101 48 5.35e-05 AGTGCGTTTA CAGCGAGC TATTGAAGGG chr3L:16388398-16388518 79 5.35e-05 TCCGCCACAA CAGCGAGC TCCCACACAG chr3R:8039590-8039710 59 6.11e-05 TGTATCACAG CTGCCAGC CTTGTGTCGC chrX:6351931-6352051 27 6.88e-05 CAGACAATGT CAGGGAGC GGTTTAAAAT chr2L:18458611-18458731 74 6.88e-05 CTATTTATAG CAGGGAGC TCCAAAACCG chrX:18704140-18704260 67 9.02e-05 AATGCCACAC CTGGCAGC TACCTGTCTG chr2R:16343826-16343946 34 9.02e-05 AATTTTGTGG CTGGCAGC TCTGAAGAGA chrX:16695794-16695914 47 9.02e-05 CTGACACAAG CTGGCAGC TGTAAAATTG chr3L:4554345-4554465 91 9.02e-05 CCTTTTGCAT CATTCAGC ACTTTATGGC chr3R:31264074-31264194 51 9.02e-05 GGTTTCTTAG CATTCAGC TCATAACAGA chr3R:13402016-13402136 88 9.02e-05 AGTATCACAA CATTCAGC TTCGCAATTA chrX:11798645-11798765 18 9.02e-05 TATCTCGATC CATTCAGC AACGACGATA chr2L:16263844-16263964 58 9.02e-05 GGTGTCCTAG CTGGCAGC TATGAGACGT chr3R:24447115-24447235 34 9.02e-05 AATTTCGGAG CATTCAGC TTGCCACCCA chr2R:8029217-8029337 49 1.00e-04 CGTGCGCTAT CATCCAGC ATCTGCCAGG chr3R:16041044-16041164 38 1.11e-04 TTTACCATAT CTGTGAGC TTTTAGTCGT chr3R:19926382-19926502 79 1.11e-04 GCTGTGTGCT CTGTGAGC TTCCGGACCA chr2R:18950716-18950836 61 1.11e-04 AAGCAAAATG CTGTGAGC TATGAAACCC chr2R:8572721-8572841 109 1.32e-04 AGTTTGTTAT CAGTCAGT TTCT chr3L:17989353-17989473 34 1.32e-04 ACTGCGACTG CAGTCAGT CGTTCAAGTG chr3L:10793353-10793473 80 1.32e-04 TGTCAGAAAG CAGTCAGT GGCCGAGTCT chr3R:18739860-18739980 82 1.43e-04 CTTGTCGCGG CAGCCAGT CAGTCAATTT chr3L:6628745-6628865 87 1.43e-04 ATTGTTATAG CAGCCAGT TCATGAGGGC chrX:16574253-16574373 69 1.43e-04 ACTGGCACAG CAGCCAGT GCGAAACTGT chr2L:8334911-8335031 108 1.53e-04 TCCTGTGGCA CATGCAGC ACATG chr3R:21437677-21437797 64 2.09e-04 GGCCCCATAG CATCGAGC TTTGTCCGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGYCAGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:15286130-15286250 1e-05 47_[+3]_65 chr3L:8028770-8028890 1e-05 23_[+3]_89 chrX:10929759-10929879 1e-05 61_[+3]_51 chr3L:13738513-13738633 1e-05 62_[+3]_50 chrX:6664115-6664235 1e-05 33_[+3]_79 chr2R:20873346-20873466 1.8e-05 45_[+3]_67 chr2L:7452219-7452339 1.8e-05 69_[+3]_43 chr3R:23012244-23012364 1.8e-05 95_[+3]_17 chrX:18218926-18219046 1.8e-05 85_[+3]_27 chrX:7752602-7752722 1.8e-05 72_[+3]_40 chr2R:15480130-15480250 2.5e-05 44_[+3]_68 chr2R:1150935-1151055 3.6e-05 109_[+3]_3 chr3R:3846686-3846806 3.6e-05 69_[+3]_43 chr2L:4726151-4726271 3.6e-05 23_[+3]_89 chr3L:3810188-3810308 5.4e-05 51_[+3]_61 chr3R:18731348-18731468 5.4e-05 78_[+3]_34 chr2R:19356455-19356575 5.4e-05 29_[+3]_83 chr4:905202-905322 5.4e-05 63_[+3]_49 chrX:6725228-6725348 5.4e-05 73_[+3]_39 chr2L:16489981-16490101 5.4e-05 47_[+3]_65 chr3L:16388398-16388518 5.4e-05 78_[+3]_34 chr3R:8039590-8039710 6.1e-05 58_[+3]_54 chrX:6351931-6352051 6.9e-05 26_[+3]_86 chr2L:18458611-18458731 6.9e-05 73_[+3]_39 chrX:18704140-18704260 9e-05 66_[+3]_46 chr2R:16343826-16343946 9e-05 33_[+3]_79 chrX:16695794-16695914 9e-05 46_[+3]_66 chr3L:4554345-4554465 9e-05 90_[+3]_22 chr3R:31264074-31264194 9e-05 50_[+3]_62 chr3R:13402016-13402136 9e-05 87_[+3]_25 chrX:11798645-11798765 9e-05 17_[+3]_95 chr2L:16263844-16263964 9e-05 57_[+3]_55 chr3R:24447115-24447235 9e-05 33_[+3]_79 chr2R:8029217-8029337 0.0001 48_[+3]_64 chr3R:16041044-16041164 0.00011 37_[+3]_75 chr3R:19926382-19926502 0.00011 78_[+3]_34 chr2R:18950716-18950836 0.00011 60_[+3]_52 chr2R:8572721-8572841 0.00013 108_[+3]_4 chr3L:17989353-17989473 0.00013 33_[+3]_79 chr3L:10793353-10793473 0.00013 79_[+3]_33 chr3R:18739860-18739980 0.00014 81_[+3]_31 chr3L:6628745-6628865 0.00014 86_[+3]_26 chrX:16574253-16574373 0.00014 68_[+3]_44 chr2L:8334911-8335031 0.00015 107_[+3]_5 chr3R:21437677-21437797 0.00021 63_[+3]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGYCAGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGYCAGC width=8 seqs=45 chr3R:15286130-15286250 ( 48) CAGTCAGC 1 chr3L:8028770-8028890 ( 24) CAGTCAGC 1 chrX:10929759-10929879 ( 62) CAGTCAGC 1 chr3L:13738513-13738633 ( 63) CAGTCAGC 1 chrX:6664115-6664235 ( 34) CAGTCAGC 1 chr2R:20873346-20873466 ( 46) CAGCCAGC 1 chr2L:7452219-7452339 ( 70) CAGCCAGC 1 chr3R:23012244-23012364 ( 96) CAGCCAGC 1 chrX:18218926-18219046 ( 86) CAGCCAGC 1 chrX:7752602-7752722 ( 73) CAGCCAGC 1 chr2R:15480130-15480250 ( 45) CAGGCAGC 1 chr2R:1150935-1151055 ( 110) CAGTGAGC 1 chr3R:3846686-3846806 ( 70) CAGTGAGC 1 chr2L:4726151-4726271 ( 24) CAGTGAGC 1 chr3L:3810188-3810308 ( 52) CAGCGAGC 1 chr3R:18731348-18731468 ( 79) CTGTCAGC 1 chr2R:19356455-19356575 ( 30) CAGCGAGC 1 chr4:905202-905322 ( 64) CTGTCAGC 1 chrX:6725228-6725348 ( 74) CTGTCAGC 1 chr2L:16489981-16490101 ( 48) CAGCGAGC 1 chr3L:16388398-16388518 ( 79) CAGCGAGC 1 chr3R:8039590-8039710 ( 59) CTGCCAGC 1 chrX:6351931-6352051 ( 27) CAGGGAGC 1 chr2L:18458611-18458731 ( 74) CAGGGAGC 1 chrX:18704140-18704260 ( 67) CTGGCAGC 1 chr2R:16343826-16343946 ( 34) CTGGCAGC 1 chrX:16695794-16695914 ( 47) CTGGCAGC 1 chr3L:4554345-4554465 ( 91) CATTCAGC 1 chr3R:31264074-31264194 ( 51) CATTCAGC 1 chr3R:13402016-13402136 ( 88) CATTCAGC 1 chrX:11798645-11798765 ( 18) CATTCAGC 1 chr2L:16263844-16263964 ( 58) CTGGCAGC 1 chr3R:24447115-24447235 ( 34) CATTCAGC 1 chr2R:8029217-8029337 ( 49) CATCCAGC 1 chr3R:16041044-16041164 ( 38) CTGTGAGC 1 chr3R:19926382-19926502 ( 79) CTGTGAGC 1 chr2R:18950716-18950836 ( 61) CTGTGAGC 1 chr2R:8572721-8572841 ( 109) CAGTCAGT 1 chr3L:17989353-17989473 ( 34) CAGTCAGT 1 chr3L:10793353-10793473 ( 80) CAGTCAGT 1 chr3R:18739860-18739980 ( 82) CAGCCAGT 1 chr3L:6628745-6628865 ( 87) CAGCCAGT 1 chrX:16574253-16574373 ( 69) CAGCCAGT 1 chr2L:8334911-8335031 ( 108) CATGCAGC 1 chr3R:21437677-21437797 ( 64) CATCGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGYCAGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1765 E= 9.7e-007 -1214 225 -1214 -1214 141 -1214 -1214 -24 -1214 -1214 193 -70 -1214 66 -28 76 -1214 175 42 -1214 181 -1214 -1214 -1214 -1214 -1214 222 -1214 -1214 204 -1214 -112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGYCAGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 9.7e-007 0.000000 1.000000 0.000000 0.000000 0.755556 0.000000 0.000000 0.244444 0.000000 0.000000 0.822222 0.177778 0.000000 0.333333 0.177778 0.488889 0.000000 0.711111 0.288889 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.866667 0.000000 0.133333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGYCAGC MEME-3 regular expression -------------------------------------------------------------------------------- C[AT]G[TC][CG]AGC -------------------------------------------------------------------------------- Time 19.59 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGMHTGC MEME-4 width = 8 sites = 33 llr = 295 E-value = 2.6e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGMHTGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::42::: pos.-specific C a::54::a probability G ::a2:2a: matrix T :a::38:: bits 2.2 * * ** 2.0 * * ** 1.8 *** ** 1.6 *** ** Relative 1.3 *** ** Entropy 1.1 *** *** (12.9 bits) 0.9 *** *** 0.7 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCCTGC consensus ATG sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGMHTGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:20873346-20873466 60 7.65e-06 CAGCAACAGG CTGCCTGC TGCAAAACTG chrX:15109143-15109263 70 7.65e-06 TTTTGTTtgc ctgcctgc ctgcttgctt chr2R:24264957-24265077 33 7.65e-06 TGTCCCAAAA CTGCCTGC TTTGAAACCT chrX:494293-494413 88 7.65e-06 GAAAATTTGT CTGCCTGC TTTTAGGCTT chr2R:10352300-10352420 41 7.65e-06 AGTCCCTTTT CTGCCTGC TATGGCACTG chrX:9044286-9044406 71 7.65e-06 CCGTCATTTG CTGCCTGC TGCAACACGT chrX:15467552-15467672 84 7.65e-06 AGGACCTAAG CTGCCTGC TCCCGCACTC chr2L:2383086-2383206 66 1.80e-05 CAGATAAGAG CTGACTGC TGCATAATCG chrX:4724341-4724461 66 1.80e-05 GTGCGTTAGG CTGACTGC TATGACACCA chrX:6119424-6119544 61 2.85e-05 CGGATGCGCG CTGCTTGC TATGGAACTC chr3L:21330385-21330505 41 2.85e-05 GACGCAAAAT CTGCTTGC TACAGCACTC chr4:905202-905322 35 3.88e-05 CCTCTTGAAT CTGCATGC TAATGAATAT chrX:6664115-6664235 75 3.88e-05 GCTTCTTGGA CTGCATGC CACAAGTGGT chr2L:378026-378146 98 4.45e-05 GTGTAGTTTG CTGCCGGC TCTGGAACAG chr2L:10004776-10004896 10 4.45e-05 ctgttgtCG CTGCCGGC GGAGGAAATG chrX:8221283-8221403 70 4.45e-05 TGACAGATAG CTGCCGGC TATGGTCGCT chr3R:21155930-21156050 52 5.87e-05 ATGACAAAAA CTGATTGC TATTGCGAAC chrX:7678953-7679073 27 5.87e-05 TTAATTTAAG CTGATTGC TACGACACTA chr2R:12338177-12338297 64 5.87e-05 TGACTGATTT CTGATTGC TTTGAAACCA chr3R:5436800-5436920 73 5.87e-05 CGAATTCGAG CTGATTGC CACGAAATCA chr2R:17286987-17287107 90 6.65e-05 ACACTATTAG CTGGCTGC CATGAGACTA chr3R:8517758-8517878 51 8.04e-05 CAATTAAAAG CTGAATGC TACATCACTG chr2R:14860737-14860857 54 8.04e-05 CATCAACAGG CTGAATGC TATGAAACTG chrX:16840053-16840173 54 8.04e-05 GGCAGAAAAG CTGAATGC TATGGCATCG chr2L:6566155-6566275 77 8.04e-05 AATGAAAATA CTGAATGC TACGAAACTA chr3R:22094111-22094231 53 8.04e-05 CTGTGGGTCT CTGAATGC TATGACACCG chr2L:21052471-21052591 84 8.81e-05 CTTACAAGCT CTGACGGC TACAAAACTT chr3R:25652202-25652322 49 9.59e-05 GCAAGCACAT CTGCTGGC GGTCAAAAGC chr2L:6613314-6613434 72 1.07e-04 CACCAAGTAA CTGGTTGC TACAGAACCT chr3R:22527860-22527980 49 1.07e-04 tacagatacT CTGGTTGC GGCGGGCAtg chr2R:7440851-7440971 75 1.35e-04 CATCAACATT CTGGATGC TATGAAAGTG chr3R:5523633-5523753 81 1.35e-04 AGTCCGATAA CTGATGGC TTTCAGAGCC chr2L:10364315-10364435 110 1.59e-04 TGGCTTTTTT CTGGTGGC CAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGMHTGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:20873346-20873466 7.7e-06 59_[+4]_53 chrX:15109143-15109263 7.7e-06 69_[+4]_43 chr2R:24264957-24265077 7.7e-06 32_[+4]_80 chrX:494293-494413 7.7e-06 87_[+4]_25 chr2R:10352300-10352420 7.7e-06 40_[+4]_72 chrX:9044286-9044406 7.7e-06 70_[+4]_42 chrX:15467552-15467672 7.7e-06 83_[+4]_29 chr2L:2383086-2383206 1.8e-05 65_[+4]_47 chrX:4724341-4724461 1.8e-05 65_[+4]_47 chrX:6119424-6119544 2.8e-05 60_[+4]_52 chr3L:21330385-21330505 2.8e-05 40_[+4]_72 chr4:905202-905322 3.9e-05 34_[+4]_78 chrX:6664115-6664235 3.9e-05 74_[+4]_38 chr2L:378026-378146 4.4e-05 97_[+4]_15 chr2L:10004776-10004896 4.4e-05 9_[+4]_103 chrX:8221283-8221403 4.4e-05 69_[+4]_43 chr3R:21155930-21156050 5.9e-05 51_[+4]_61 chrX:7678953-7679073 5.9e-05 26_[+4]_86 chr2R:12338177-12338297 5.9e-05 63_[+4]_49 chr3R:5436800-5436920 5.9e-05 72_[+4]_40 chr2R:17286987-17287107 6.6e-05 89_[+4]_23 chr3R:8517758-8517878 8e-05 50_[+4]_62 chr2R:14860737-14860857 8e-05 53_[+4]_59 chrX:16840053-16840173 8e-05 53_[+4]_59 chr2L:6566155-6566275 8e-05 76_[+4]_36 chr3R:22094111-22094231 8e-05 52_[+4]_60 chr2L:21052471-21052591 8.8e-05 83_[+4]_29 chr3R:25652202-25652322 9.6e-05 48_[+4]_64 chr2L:6613314-6613434 0.00011 71_[+4]_41 chr3R:22527860-22527980 0.00011 48_[+4]_64 chr2R:7440851-7440971 0.00014 74_[+4]_38 chr3R:5523633-5523753 0.00014 80_[+4]_32 chr2L:10364315-10364435 0.00016 109_[+4]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGMHTGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGMHTGC width=8 seqs=33 chr2R:20873346-20873466 ( 60) CTGCCTGC 1 chrX:15109143-15109263 ( 70) CTGCCTGC 1 chr2R:24264957-24265077 ( 33) CTGCCTGC 1 chrX:494293-494413 ( 88) CTGCCTGC 1 chr2R:10352300-10352420 ( 41) CTGCCTGC 1 chrX:9044286-9044406 ( 71) CTGCCTGC 1 chrX:15467552-15467672 ( 84) CTGCCTGC 1 chr2L:2383086-2383206 ( 66) CTGACTGC 1 chrX:4724341-4724461 ( 66) CTGACTGC 1 chrX:6119424-6119544 ( 61) CTGCTTGC 1 chr3L:21330385-21330505 ( 41) CTGCTTGC 1 chr4:905202-905322 ( 35) CTGCATGC 1 chrX:6664115-6664235 ( 75) CTGCATGC 1 chr2L:378026-378146 ( 98) CTGCCGGC 1 chr2L:10004776-10004896 ( 10) CTGCCGGC 1 chrX:8221283-8221403 ( 70) CTGCCGGC 1 chr3R:21155930-21156050 ( 52) CTGATTGC 1 chrX:7678953-7679073 ( 27) CTGATTGC 1 chr2R:12338177-12338297 ( 64) CTGATTGC 1 chr3R:5436800-5436920 ( 73) CTGATTGC 1 chr2R:17286987-17287107 ( 90) CTGGCTGC 1 chr3R:8517758-8517878 ( 51) CTGAATGC 1 chr2R:14860737-14860857 ( 54) CTGAATGC 1 chrX:16840053-16840173 ( 54) CTGAATGC 1 chr2L:6566155-6566275 ( 77) CTGAATGC 1 chr3R:22094111-22094231 ( 53) CTGAATGC 1 chr2L:21052471-21052591 ( 84) CTGACGGC 1 chr3R:25652202-25652322 ( 49) CTGCTGGC 1 chr2L:6613314-6613434 ( 72) CTGGTTGC 1 chr3R:22527860-22527980 ( 49) CTGGTTGC 1 chr2R:7440851-7440971 ( 75) CTGGATGC 1 chr3R:5523633-5523753 ( 81) CTGATGGC 1 chr2L:10364315-10364435 ( 110) CTGGTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGMHTGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0849 E= 2.6e-003 -1169 225 -1169 -1169 -1169 -1169 -1169 179 -1169 -1169 222 -1169 47 111 -51 -1169 -23 101 -1169 21 -1169 -1169 -2 145 -1169 -1169 222 -1169 -1169 225 -1169 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGMHTGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 2.6e-003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.393939 0.454545 0.151515 0.000000 0.242424 0.424242 0.000000 0.333333 0.000000 0.000000 0.212121 0.787879 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGMHTGC MEME-4 regular expression -------------------------------------------------------------------------------- CTG[CA][CTA][TG]GC -------------------------------------------------------------------------------- Time 25.50 secs. ******************************************************************************** ******************************************************************************** MOTIF WGCAGCAA MEME-5 width = 8 sites = 18 llr = 171 E-value = 2.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGCAGCAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 3::9::9a pos.-specific C 1:a::a:: probability G 1a::a:1: matrix T 4::1:::: bits 2.2 ** ** 2.0 ** ** 1.8 ** ** * 1.6 ***** * Relative 1.3 ******* Entropy 1.1 ******* (13.7 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel TGCAGCAA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCAGCAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:5693497-5693617 61 1.38e-05 ATGATTCGCT TGCAGCAA CAAATTACAA chr3R:25627140-25627260 57 1.38e-05 TCTTCAGTTA TGCAGCAA TCACCTTCTG chr3R:7999532-7999652 38 1.38e-05 CAATAAAATG TGCAGCAA GTAGCTTTTG chrX:21145514-21145634 103 1.38e-05 AAGATGAATT TGCAGCAA ATTTTCTAAT chr3L:4554345-4554465 16 1.38e-05 GAGTGAGTTT TGCAGCAA TCAGCTTTTG chrX:11798645-11798765 75 1.38e-05 AGCTGTCTGC TGCAGCAA CCGCCTGACC chr2L:15118151-15118271 38 1.38e-05 TCTTGTATGT TGCAGCAA TTAGCTTTCA chr3R:4350204-4350324 49 2.73e-05 TTGGTGCCGT AGCAGCAA GCAATAAAAG chr2R:7791376-7791496 47 2.73e-05 CTATGTACCA AGCAGCAA GCATATGTGT chr3R:5438898-5439018 66 2.73e-05 TATATATGTA AGCAGCAA AGCGAGTTAT chr2R:7454490-7454610 40 2.73e-05 TGACATTTTT AGCAGCAA GACCACAACA chr2L:19565567-19565687 113 3.74e-05 GAATACCTAT CGCAGCAA chr3L:21540107-21540227 73 3.74e-05 TGATGCTCAC CGCAGCAA CTTGCTGGCT chr2R:16070518-16070638 69 4.76e-05 TAATTTATCG GGCAGCAA GTCTAGGTAA chr3R:27561321-27561441 16 4.76e-05 TTTGTGGCTC GGCAGCAA AGCTCTGCGA chr3R:25882085-25882205 17 5.80e-05 AACGTTTAAG TGCAGCGA CCGCCGAAGA chrX:6664115-6664235 57 6.83e-05 ATCCTGTCAT AGCAGCGA GCTTCTTGGA chr2R:10618210-10618330 49 1.11e-04 GCCAGAGGAC AGCTGCAA GTTCAAGTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCAGCAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:5693497-5693617 1.4e-05 60_[+5]_52 chr3R:25627140-25627260 1.4e-05 56_[+5]_56 chr3R:7999532-7999652 1.4e-05 37_[+5]_75 chrX:21145514-21145634 1.4e-05 102_[+5]_10 chr3L:4554345-4554465 1.4e-05 15_[+5]_97 chrX:11798645-11798765 1.4e-05 74_[+5]_38 chr2L:15118151-15118271 1.4e-05 37_[+5]_75 chr3R:4350204-4350324 2.7e-05 48_[+5]_64 chr2R:7791376-7791496 2.7e-05 46_[+5]_66 chr3R:5438898-5439018 2.7e-05 65_[+5]_47 chr2R:7454490-7454610 2.7e-05 39_[+5]_73 chr2L:19565567-19565687 3.7e-05 112_[+5] chr3L:21540107-21540227 3.7e-05 72_[+5]_40 chr2R:16070518-16070638 4.8e-05 68_[+5]_44 chr3R:27561321-27561441 4.8e-05 15_[+5]_97 chr3R:25882085-25882205 5.8e-05 16_[+5]_96 chrX:6664115-6664235 6.8e-05 56_[+5]_56 chr2R:10618210-10618330 0.00011 48_[+5]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCAGCAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGCAGCAA width=8 seqs=18 chr2R:5693497-5693617 ( 61) TGCAGCAA 1 chr3R:25627140-25627260 ( 57) TGCAGCAA 1 chr3R:7999532-7999652 ( 38) TGCAGCAA 1 chrX:21145514-21145634 ( 103) TGCAGCAA 1 chr3L:4554345-4554465 ( 16) TGCAGCAA 1 chrX:11798645-11798765 ( 75) TGCAGCAA 1 chr2L:15118151-15118271 ( 38) TGCAGCAA 1 chr3R:4350204-4350324 ( 49) AGCAGCAA 1 chr2R:7791376-7791496 ( 47) AGCAGCAA 1 chr3R:5438898-5439018 ( 66) AGCAGCAA 1 chr2R:7454490-7454610 ( 40) AGCAGCAA 1 chr2L:19565567-19565687 ( 113) CGCAGCAA 1 chr3L:21540107-21540227 ( 73) CGCAGCAA 1 chr2R:16070518-16070638 ( 69) GGCAGCAA 1 chr3R:27561321-27561441 ( 16) GGCAGCAA 1 chr3R:25882085-25882205 ( 17) TGCAGCGA 1 chrX:6664115-6664235 ( 57) AGCAGCGA 1 chr2R:10618210-10618330 ( 49) AGCTGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCAGCAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7495 E= 2.4e+003 23 -92 -95 62 -1081 -1081 222 -1081 -1081 225 -1081 -1081 173 -1081 -1081 -238 -1081 -1081 222 -1081 -1081 225 -1081 -1081 164 -1081 -95 -1081 181 -1081 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCAGCAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 2.4e+003 0.333333 0.111111 0.111111 0.444444 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.944444 0.000000 0.000000 0.055556 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGCAGCAA MEME-5 regular expression -------------------------------------------------------------------------------- [TA]GCAGCAA -------------------------------------------------------------------------------- Time 31.35 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15467552-15467672 3.66e-04 83_[+4(7.65e-06)]_29 chr3R:21731094-21731214 5.11e-03 61_[+3(9.02e-05)]_51 chr2L:20957413-20957533 1.22e-04 48_[+1(1.83e-05)]_64 chr3L:16388398-16388518 6.58e-04 24_[+3(5.35e-05)]_10_[+3(5.35e-05)]_\ 28_[+3(5.35e-05)]_34 chrX:16574253-16574373 1.98e-04 49_[+1(1.83e-05)]_63 chr2R:13557510-13557630 4.86e-01 120 chrX:6664115-6664235 9.94e-06 33_[+3(1.02e-05)]_17_[+3(5.35e-05)]_\ 8_[+4(3.88e-05)]_38 chr2R:11753059-11753179 9.38e-02 120 chr2R:15670126-15670246 2.42e-04 54_[+1(3.20e-05)]_58 chr3L:21330385-21330505 1.85e-02 40_[+4(2.85e-05)]_72 chrX:9044286-9044406 6.73e-05 70_[+4(7.65e-06)]_42 chr2R:10352300-10352420 1.06e-03 40_[+4(7.65e-06)]_16_[+4(3.88e-05)]_\ 16_[+4(2.85e-05)]_24 chr3L:17887498-17887618 1.57e-02 120 chr2R:17286987-17287107 2.94e-03 89_[+4(6.65e-05)]_23 chr3R:16047698-16047818 4.14e-02 120 chr2L:16489981-16490101 2.29e-03 47_[+3(5.35e-05)]_65 chrX:15910795-15910915 1.05e-01 22_[+1(1.83e-05)]_90 chr2R:18950716-18950836 3.37e-03 120 chrX:8221283-8221403 1.71e-02 69_[+4(4.45e-05)]_43 chr3R:5436800-5436920 1.65e-01 72_[+4(5.87e-05)]_40 chr3R:29907717-29907837 1.88e-04 63_[+2(1.94e-05)]_14_[+2(1.94e-05)]_\ 27 chr3R:22803667-22803787 8.22e-03 46_[+2(1.94e-05)]_66 chr3L:7639658-7639778 1.13e-01 120 chr2L:13332284-13332404 1.17e-03 52_[+1(1.83e-05)]_60 chr3L:2894251-2894371 9.36e-01 120 chr3L:11711909-11712029 4.17e-02 120 chr3R:10056104-10056224 4.92e-01 120 chrX:7752602-7752722 1.32e-04 63_[+2(1.94e-05)]_1_[+3(1.76e-05)]_\ 40 chr3R:30464383-30464503 8.11e-01 120 chr3R:24447115-24447235 1.60e-03 33_[+3(9.02e-05)]_48_[+2(9.77e-05)]_\ 23 chr3L:14198241-14198361 2.25e-01 120 chr3R:14565557-14565677 3.16e-02 69_[+2(3.35e-05)]_43 chr2R:20762098-20762218 7.64e-02 52_[+1(1.83e-05)]_60 chr2R:16553062-16553182 4.14e-02 120 chr2L:21091121-21091241 2.84e-01 120 chrX:20389703-20389823 1.42e-02 120 chr2L:13960539-13960659 1.24e-01 120 chr3R:7265734-7265854 9.60e-04 76_[+2(1.94e-05)]_36 chr3L:19867376-19867496 1.71e-02 56_[+1(3.20e-05)]_56 chrX:6725228-6725348 1.59e-02 73_[+3(5.35e-05)]_39 chr2L:6566427-6566547 6.54e-02 120 chrX:19161126-19161246 1.25e-03 65_[+2(1.94e-05)]_47 chr2L:21235644-21235764 1.85e-02 43_[+1(4.55e-05)]_69 chr3R:27596109-27596229 3.67e-02 70_[+2(1.94e-05)]_42 chr3R:21437677-21437797 7.22e-03 120 chr2R:6017020-6017140 2.94e-01 120 chr3L:10793353-10793473 1.64e-02 120 chr2L:10685864-10685984 4.80e-03 86_[+1(1.83e-05)]_26 chrX:16519568-16519688 2.20e-03 42_[+3(2.52e-05)]_70 chr3R:8039590-8039710 1.66e-03 58_[+3(6.11e-05)]_54 chrX:19266263-19266383 2.91e-02 120 chr3R:15224550-15224670 4.13e-01 120 chr3R:7265941-7266061 2.43e-03 71_[+4(2.85e-05)]_41 chr2L:16263844-16263964 1.25e-02 57_[+3(9.02e-05)]_55 chr3L:13738513-13738633 3.52e-03 62_[+3(1.02e-05)]_50 chr2L:12159712-12159832 5.35e-03 29_[+2(1.94e-05)]_83 chr3R:26007467-26007587 4.84e-03 55_[+4(8.04e-05)]_57 chr3R:31271130-31271250 1.50e-03 63_[+2(1.94e-05)]_49 chrX:6119424-6119544 1.67e-01 60_[+4(2.85e-05)]_52 chr2L:15118151-15118271 4.31e-02 37_[+5(1.38e-05)]_75 chrX:12896849-12896969 3.70e-02 120 chrX:16744487-16744607 1.13e-01 120 chrX:11798645-11798765 8.06e-06 17_[+3(9.02e-05)]_35_[+1(3.20e-05)]_\ 6_[+5(1.38e-05)]_38 chrX:10929759-10929879 1.49e-02 61_[+3(1.02e-05)]_51 chr3L:2894030-2894150 1.57e-01 [+1(3.20e-05)]_112 chrX:4882805-4882925 5.73e-04 58_[+4(2.85e-05)]_54 chr3L:8053385-8053505 6.13e-01 120 chrX:494293-494413 1.13e-04 87_[+4(7.65e-06)]_25 chr2R:7477768-7477888 1.14e-01 120 chrX:8314794-8314914 3.54e-02 47_[+1(5.93e-05)]_65 chr3R:27165522-27165642 6.84e-01 120 chrX:13258179-13258299 5.36e-03 120 chr4:905202-905322 6.00e-05 34_[+4(3.88e-05)]_21_[+3(5.35e-05)]_\ 49 chr3R:19926382-19926502 2.83e-03 43_[+1(5.93e-05)]_69 chr3R:7644485-7644605 1.01e-02 120 chr2L:8334911-8335031 2.19e-05 34_[+1(1.83e-05)]_78 chr2L:11269482-11269602 2.94e-03 68_[+2(1.94e-05)]_44 chr2R:7454490-7454610 1.68e-02 39_[+5(2.73e-05)]_73 chr3R:19503217-19503337 9.09e-03 120 chrX:4724341-4724461 3.37e-02 65_[+4(1.80e-05)]_47 chr3R:13402016-13402136 5.85e-02 87_[+3(9.02e-05)]_25 chr3R:16719664-16719784 1.21e-01 6_[+1(1.83e-05)]_106 chr3R:6100990-6101110 1.21e-04 50_[+3(1.76e-05)]_62 chr2R:5885040-5885160 7.69e-01 120 chr2L:12707343-12707463 9.69e-02 39_[+1(1.83e-05)]_73 chr3R:27165722-27165842 1.36e-01 120 chr3L:19483141-19483261 6.79e-04 42_[+2(3.35e-05)]_70 chr2R:10557150-10557270 3.53e-03 75_[+2(3.35e-05)]_37 chr2L:4726151-4726271 3.85e-04 23_[+3(3.56e-05)]_25_[+2(1.94e-05)]_\ 56 chr2R:8029217-8029337 9.82e-02 120 chr2L:4868511-4868631 2.10e-02 120 chr2L:21052471-21052591 1.28e-02 83_[+4(8.81e-05)]_29 chr2R:19144710-19144830 7.25e-03 67_[+3(9.02e-05)]_45 chr2L:9089678-9089798 5.81e-02 120 chr3L:8160182-8160302 3.55e-02 45_[+1(1.83e-05)]_67 chrX:10835395-10835515 9.50e-04 58_[+4(1.80e-05)]_54 chrX:15486774-15486894 4.25e-01 120 chr2R:20542574-20542694 5.33e-02 120 chr3R:31264074-31264194 4.33e-02 50_[+3(9.02e-05)]_62 chr3L:4554345-4554465 4.22e-05 15_[+5(1.38e-05)]_2_[+2(1.94e-05)]_\ 57_[+3(9.02e-05)]_22 chr3R:22536061-22536181 1.79e-01 120 chr2R:10687986-10688106 1.03e-01 120 chr3R:28677839-28677959 1.94e-03 38_[+2(5.96e-05)]_48_[+1(1.83e-05)]_\ 18 chr2R:12403714-12403834 5.82e-01 120 chr3R:16730875-16730995 5.37e-01 120 chr2R:14002467-14002587 3.10e-01 120 chr3L:9211416-9211536 5.57e-02 120 chr2L:20098321-20098441 2.41e-03 62_[+1(1.83e-05)]_50 chrX:18218926-18219046 1.62e-04 68_[+2(1.94e-05)]_9_[+3(1.76e-05)]_\ 27 chr2R:24264957-24265077 2.19e-02 32_[+4(7.65e-06)]_80 chr3L:6447181-6447301 1.33e-04 38_[+3(6.11e-05)]_74 chr2L:19565363-19565483 8.50e-01 120 chr3R:23012244-23012364 1.73e-03 87_[+3(1.76e-05)]_[+3(1.76e-05)]_\ [+3(1.76e-05)]_9 chr2L:7452219-7452339 1.14e-03 69_[+3(1.76e-05)]_43 chr2R:10618210-10618330 1.31e-01 120 chr2R:7736016-7736136 9.87e-03 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chr2R:9369424-9369544 1.78e-02 50_[+1(1.83e-05)]_62 chr2L:7181999-7182119 9.51e-02 120 chr2R:16837169-16837289 7.52e-03 120 chrX:18328735-18328855 2.37e-01 120 chr3R:10045517-10045637 2.99e-01 120 chr3R:32060962-32061082 1.96e-02 90_[+1(1.83e-05)]_22 chr2R:17460457-17460577 8.21e-05 28_[+1(1.83e-05)]_84 chr3L:16150977-16151097 1.84e-02 65_[+1(1.83e-05)]_47 chr3R:25208673-25208793 5.12e-01 120 chr2L:19439972-19440092 1.18e-02 120 chr2R:16343826-16343946 1.05e-02 33_[+3(9.02e-05)]_79 chr2R:24757143-24757263 6.52e-01 120 chrX:13249638-13249758 4.95e-02 108_[+2(9.77e-05)]_4 chr2R:8420698-8420818 3.45e-03 41_[+3(1.02e-05)]_71 chr2R:15851501-15851621 5.29e-03 105_[+2(1.94e-05)]_7 chr2L:22179372-22179492 7.88e-03 81_[+2(5.96e-05)]_31 chrX:21145514-21145634 9.87e-04 102_[+5(1.38e-05)]_10 chr3R:7999532-7999652 5.39e-04 37_[+5(1.38e-05)]_2_[+2(1.94e-05)]_\ 65 chr3L:17989353-17989473 3.85e-02 120 chrX:7678953-7679073 2.07e-04 26_[+4(5.87e-05)]_36_[+2(3.35e-05)]_\ 42 chr3R:25627140-25627260 3.33e-03 56_[+5(1.38e-05)]_56 chr3R:6708985-6709105 1.01e-01 120 chr2L:4661092-4661212 2.58e-03 20_[+1(5.93e-05)]_92 chr3L:14391601-14391721 2.03e-01 120 chr3L:3810188-3810308 1.36e-03 51_[+3(5.35e-05)]_61 chr2R:14860737-14860857 4.22e-03 53_[+4(8.04e-05)]_59 chr2R:11473860-11473980 6.69e-02 34_[+1(3.20e-05)]_78 chr2L:19363465-19363585 7.86e-01 120 chr2R:7735776-7735896 7.59e-02 120 chr2L:14348774-14348894 7.70e-02 120 chr3R:4350204-4350324 2.91e-03 48_[+5(2.73e-05)]_64 chr2R:14858617-14858737 7.02e-01 120 chr2R:16070518-16070638 3.77e-02 68_[+5(4.76e-05)]_44 chr2R:5693497-5693617 3.23e-03 60_[+5(1.38e-05)]_52 chr4:942909-943029 2.97e-01 87_[+2(9.77e-05)]_25 chr3L:6628745-6628865 2.69e-02 120 chr3L:1567734-1567854 8.39e-01 120 chr2L:378026-378146 4.75e-02 97_[+4(4.45e-05)]_15 chr2R:9972780-9972900 1.82e-01 120 chr3R:18739860-18739980 4.02e-02 120 chr3R:32060374-32060494 7.55e-03 120 chr3R:8517758-8517878 7.73e-03 50_[+4(8.04e-05)]_62 chr3R:19643078-19643198 1.18e-03 107_[+4(1.80e-05)]_5 chr2R:13691478-13691598 3.32e-02 75_[+2(1.94e-05)]_37 chr3R:3846686-3846806 2.29e-01 69_[+3(3.56e-05)]_43 chr3R:15286130-15286250 1.20e-02 47_[+3(1.02e-05)]_65 chr3R:25882085-25882205 1.05e-02 16_[+5(5.80e-05)]_96 chr2R:9082029-9082149 1.33e-02 120 chr2R:1150935-1151055 1.55e-02 109_[+3(3.56e-05)]_3 chr2R:8572721-8572841 1.55e-02 120 chr3L:8074013-8074133 8.31e-01 120 chr3R:5571130-5571250 1.07e-01 120 chr2R:15573907-15574027 2.63e-01 120 chr3R:21155930-21156050 7.20e-02 51_[+4(5.87e-05)]_61 chr2L:9949246-9949366 1.04e-01 120 chrX:6351931-6352051 6.60e-02 26_[+3(6.88e-05)]_86 chr3L:9691568-9691688 1.64e-01 48_[+1(1.83e-05)]_64 chr2R:15480130-15480250 1.00e-03 44_[+3(2.52e-05)]_68 chrX:3835429-3835549 7.78e-02 120 chrX:18704140-18704260 3.93e-03 66_[+3(9.02e-05)]_46 chr3R:25652202-25652322 4.41e-05 48_[+4(9.59e-05)]_3_[+1(1.83e-05)]_\ 32_[+2(3.35e-05)]_13 chr3L:9220075-9220195 2.92e-01 120 chr2R:17469164-17469284 3.46e-01 120 chr3R:21140504-21140624 9.95e-01 120 chr3L:18106709-18106829 6.20e-02 120 chr3R:18301691-18301811 8.44e-02 46_[+1(5.93e-05)]_66 chrX:19201801-19201921 1.74e-02 76_[+2(1.94e-05)]_36 chr3R:24651036-24651156 3.86e-02 120 chr4:455579-455699 1.26e-01 120 chr2L:17784809-17784929 1.53e-02 89_[+1(1.83e-05)]_23 chr3R:19491133-19491253 6.32e-03 43_[+1(1.83e-05)]_69 chr2L:8709617-8709737 7.88e-04 86_[+2(5.96e-05)]_9_[+1(5.93e-05)]_\ 9 chr3L:3788245-3788365 5.05e-01 120 chrX:18239440-18239560 3.43e-03 51_[+1(1.83e-05)]_61 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************