******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1792.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:4654709-4654829 1.0000 120 chr3R:31603833-31603953 1.0000 120 chr3R:29757349-29757469 1.0000 120 chr3R:23181076-23181196 1.0000 120 chr2L:2133097-2133217 1.0000 120 chr2R:14357231-14357351 1.0000 120 chrX:15910073-15910193 1.0000 120 chr2L:2038729-2038849 1.0000 120 chr2R:6464965-6465085 1.0000 120 chr3L:11107575-11107695 1.0000 120 chr3L:11286597-11286717 1.0000 120 chr3R:9725121-9725241 1.0000 120 chr3R:21130173-21130293 1.0000 120 chr3L:17052571-17052691 1.0000 120 chrX:11391698-11391818 1.0000 120 chr2R:6984030-6984150 1.0000 120 chr3L:8440887-8441007 1.0000 120 chr2R:17062650-17062770 1.0000 120 chrX:6982225-6982345 1.0000 120 chr2R:6938572-6938692 1.0000 120 chr2L:13747953-13748073 1.0000 120 chr2R:14486995-14487115 1.0000 120 chr3R:10150743-10150863 1.0000 120 chr3R:22526484-22526604 1.0000 120 chr3R:26242573-26242693 1.0000 120 chr2R:14488720-14488840 1.0000 120 chr2R:6786812-6786932 1.0000 120 chr3R:5613244-5613364 1.0000 120 chr2L:16523187-16523307 1.0000 120 chr3L:3080646-3080766 1.0000 120 chr3R:10677646-10677766 1.0000 120 chr2L:9775394-9775514 1.0000 120 chr2L:20079063-20079183 1.0000 120 chr2R:18334397-18334517 1.0000 120 chr3R:31636687-31636807 1.0000 120 chr2R:19631115-19631235 1.0000 120 chr2L:19949777-19949897 1.0000 120 chr2R:17548477-17548597 1.0000 120 chr3R:31610980-31611100 1.0000 120 chr2L:6462316-6462436 1.0000 120 chr3R:9529479-9529599 1.0000 120 chrX:17578299-17578419 1.0000 120 chr3R:28552361-28552481 1.0000 120 chr2L:1650184-1650304 1.0000 120 chr2R:24099127-24099247 1.0000 120 chrX:5977260-5977380 1.0000 120 chr2L:10497509-10497629 1.0000 120 chr3R:14577225-14577345 1.0000 120 chrX:6310522-6310642 1.0000 120 chr2R:17792869-17792989 1.0000 120 chr3R:28117635-28117755 1.0000 120 chr2L:19069677-19069797 1.0000 120 chr3R:12728409-12728529 1.0000 120 chr3R:16309444-16309564 1.0000 120 chr3L:13022504-13022624 1.0000 120 chr3R:9056808-9056928 1.0000 120 chr3R:27557124-27557244 1.0000 120 chr2L:5225738-5225858 1.0000 120 chr2R:10555608-10555728 1.0000 120 chr2L:7175948-7176068 1.0000 120 chr3R:26436722-26436842 1.0000 120 chrX:4505499-4505619 1.0000 120 chrX:18407436-18407556 1.0000 120 chr2L:5207315-5207435 1.0000 120 chr3L:20518235-20518355 1.0000 120 chr2R:22368099-22368219 1.0000 120 chr3L:8584236-8584356 1.0000 120 chr3L:2457804-2457924 1.0000 120 chr3R:26555934-26556054 1.0000 120 chr3R:29493409-29493529 1.0000 120 chr3R:24333308-24333428 1.0000 120 chr3L:20731015-20731135 1.0000 120 chr3L:18144783-18144903 1.0000 120 chrX:20423831-20423951 1.0000 120 chr2L:17388201-17388321 1.0000 120 chrX:20506092-20506212 1.0000 120 chrX:7300422-7300542 1.0000 120 chr3L:3983504-3983624 1.0000 120 chr2R:24893701-24893821 1.0000 120 chrX:3748956-3749076 1.0000 120 chr2R:7167954-7168074 1.0000 120 chr2R:14488466-14488586 1.0000 120 chrX:487610-487730 1.0000 120 chr3R:18315369-18315489 1.0000 120 chr3L:9372714-9372834 1.0000 120 chr3L:18838003-18838123 1.0000 120 chr3L:785827-785947 1.0000 120 chr3L:3411877-3411997 1.0000 120 chrX:10744771-10744891 1.0000 120 chr3L:16582869-16582989 1.0000 120 chr2L:14619754-14619874 1.0000 120 chr2L:16817723-16817843 1.0000 120 chr3R:20273709-20273829 1.0000 120 chr2R:22387642-22387762 1.0000 120 chr2L:7628532-7628652 1.0000 120 chr3R:14002226-14002346 1.0000 120 chr2L:12707508-12707628 1.0000 120 chr2R:10045586-10045706 1.0000 120 chr2L:8522112-8522232 1.0000 120 chr3R:7129478-7129598 1.0000 120 chrX:13253204-13253324 1.0000 120 chr2R:13586368-13586488 1.0000 120 chr2R:6652859-6652979 1.0000 120 chrX:3538916-3539036 1.0000 120 chr3R:10024142-10024262 1.0000 120 chr2L:6252383-6252503 1.0000 120 chr3L:94173-94293 1.0000 120 chr2L:10231248-10231368 1.0000 120 chr3L:11258529-11258649 1.0000 120 chr3R:10699098-10699218 1.0000 120 chr2L:22168593-22168713 1.0000 120 chr3R:16255340-16255460 1.0000 120 chr2L:5324873-5324993 1.0000 120 chrX:1476901-1477021 1.0000 120 chr3R:31220854-31220974 1.0000 120 chr3R:15286205-15286325 1.0000 120 chr2L:19121036-19121156 1.0000 120 chr2L:283258-283378 1.0000 120 chr3R:6816325-6816445 1.0000 120 chr2L:2906192-2906312 1.0000 120 chrX:9119393-9119513 1.0000 120 chr2R:16344368-16344488 1.0000 120 chr3L:4353884-4354004 1.0000 120 chr3R:30802319-30802439 1.0000 120 chr3L:12741748-12741868 1.0000 120 chr2L:20066381-20066501 1.0000 120 chr2L:4838611-4838731 1.0000 120 chr3L:5789861-5789981 1.0000 120 chr3R:18438342-18438462 1.0000 120 chr2R:14136931-14137051 1.0000 120 chr2R:11792755-11792875 1.0000 120 chr3L:3851983-3852103 1.0000 120 chrX:2166259-2166379 1.0000 120 chr2R:22062506-22062626 1.0000 120 chr3R:9701414-9701534 1.0000 120 chr3L:10866723-10866843 1.0000 120 chr2R:5128342-5128462 1.0000 120 chr3R:26952335-26952455 1.0000 120 chrX:18239444-18239564 1.0000 120 chrX:18405166-18405286 1.0000 120 chr2L:18136726-18136846 1.0000 120 chr2L:7037975-7038095 1.0000 120 chrX:19665994-19666114 1.0000 120 chr3L:14706787-14706907 1.0000 120 chrX:2294640-2294760 1.0000 120 chr2L:2864802-2864922 1.0000 120 chr2R:5122220-5122340 1.0000 120 chr2L:12463163-12463283 1.0000 120 chr3L:15234633-15234753 1.0000 120 chr3L:15691261-15691381 1.0000 120 chr3R:31309410-31309530 1.0000 120 chrX:20631320-20631440 1.0000 120 chr3L:3305556-3305676 1.0000 120 chr2R:22540078-22540198 1.0000 120 chr3L:361381-361501 1.0000 120 chr2L:3144805-3144925 1.0000 120 chr3L:9461748-9461868 1.0000 120 chr2L:9494861-9494981 1.0000 120 chr3R:25215215-25215335 1.0000 120 chr2L:220670-220790 1.0000 120 chr2L:974209-974329 1.0000 120 chrX:6592180-6592300 1.0000 120 chr2R:24293599-24293719 1.0000 120 chr2R:14302807-14302927 1.0000 120 chr3R:23922316-23922436 1.0000 120 chr3R:16769490-16769610 1.0000 120 chr2L:13838795-13838915 1.0000 120 chr2L:5944802-5944922 1.0000 120 chr2L:21619375-21619495 1.0000 120 chr2R:18774923-18775043 1.0000 120 chr2R:23725946-23726066 1.0000 120 chr2R:9309643-9309763 1.0000 120 chr3R:5861628-5861748 1.0000 120 chr2L:4403099-4403219 1.0000 120 chr2L:102255-102375 1.0000 120 chr3L:5794073-5794193 1.0000 120 chrX:4609920-4610040 1.0000 120 chr2R:11809516-11809636 1.0000 120 chr3R:5660065-5660185 1.0000 120 chr3L:4614133-4614253 1.0000 120 chr2L:3158706-3158826 1.0000 120 chr3L:19630921-19631041 1.0000 120 chrX:618761-618881 1.0000 120 chr3L:12037922-12038042 1.0000 120 chr2R:12259370-12259490 1.0000 120 chrX:13257207-13257327 1.0000 120 chr3L:18398446-18398566 1.0000 120 chr3R:11244128-11244248 1.0000 120 chr2R:12475922-12476042 1.0000 120 chr3R:23387003-23387123 1.0000 120 chr3R:30814962-30815082 1.0000 120 chr2R:9712275-9712395 1.0000 120 chr2L:3856413-3856533 1.0000 120 chrX:10602374-10602494 1.0000 120 chr2R:23551438-23551558 1.0000 120 chr2L:10276865-10276985 1.0000 120 chrX:6375813-6375933 1.0000 120 chrX:5420803-5420923 1.0000 120 chr3R:20593004-20593124 1.0000 120 chr2R:8242580-8242700 1.0000 120 chr3L:1546568-1546688 1.0000 120 chr2L:3477293-3477413 1.0000 120 chr3L:14190115-14190235 1.0000 120 chr2L:20890001-20890121 1.0000 120 chr3R:13683851-13683971 1.0000 120 chrX:5082979-5083099 1.0000 120 chr3L:6054887-6055007 1.0000 120 chr3R:21161659-21161779 1.0000 120 chrX:17582812-17582932 1.0000 120 chr3R:24031939-24032059 1.0000 120 chr2R:9544898-9545018 1.0000 120 chr2L:6343572-6343692 1.0000 120 chr2R:10048551-10048671 1.0000 120 chr2L:12369690-12369810 1.0000 120 chr2R:9388687-9388807 1.0000 120 chr2R:23383478-23383598 1.0000 120 chr2L:117835-117955 1.0000 120 chr2R:21060543-21060663 1.0000 120 chrX:5665904-5666024 1.0000 120 chr3R:31395368-31395488 1.0000 120 chrX:2136516-2136636 1.0000 120 chr2L:488398-488518 1.0000 120 chr2R:18994249-18994369 1.0000 120 chr3L:9968355-9968475 1.0000 120 chr3L:12802660-12802780 1.0000 120 chr3R:14357575-14357695 1.0000 120 chr2R:21049389-21049509 1.0000 120 chrX:19308105-19308225 1.0000 120 chr3L:11304030-11304150 1.0000 120 chrX:13626030-13626150 1.0000 120 chrX:15076086-15076206 1.0000 120 chr3L:13236749-13236869 1.0000 120 chr2R:17848898-17849018 1.0000 120 chr2L:3356542-3356662 1.0000 120 chr3L:17912738-17912858 1.0000 120 chrX:2012914-2013034 1.0000 120 chrX:11451155-11451275 1.0000 120 chr3L:292362-292482 1.0000 120 chr3L:14028832-14028952 1.0000 120 chrX:11660579-11660699 1.0000 120 chr3L:11580062-11580182 1.0000 120 chr3R:21493655-21493775 1.0000 120 chrX:1270793-1270913 1.0000 120 chr2L:6700811-6700931 1.0000 120 chrX:11854837-11854957 1.0000 120 chr2L:20950780-20950900 1.0000 120 chr3L:11790033-11790153 1.0000 120 chr3L:9402458-9402578 1.0000 120 chrX:10806014-10806134 1.0000 120 chr3L:13922498-13922618 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG1792/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1792.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.3 C 0.199 G 0.197 T 0.304 Background letter frequencies (from file dataset with add-one prior applied): A 0.3 C 0.199 G 0.197 T 0.304 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGCRGGGG MEME-1 width = 8 sites = 13 llr = 131 E-value = 6.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCRGGGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::341::2 pos.-specific C ::7:::2: probability G aa:69a88 matrix T :::::::: bits 2.3 ** * 2.1 ** * 1.9 ** ** 1.6 ** **** Relative 1.4 ** **** Entropy 1.2 ******** (14.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCGGGGG consensus AA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCRGGGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:13236749-13236869 101 2.29e-06 TGGGGGCGGT GGCGGGGG GCCGGGAAAT chrX:6592180-6592300 44 2.29e-06 GGGTGGCGGG GGCGGGGG GGTATGGGCA chrX:19665994-19666114 26 5.78e-06 GGCCCTCGCG GGCAGGGG CCGCGTTTTT chr3R:23922316-23922436 75 1.16e-05 AAGGGGCAGA GGAGGGGG AGGGGGTAGA chr3R:29493409-29493529 54 1.16e-05 GATATCGATA GGCGGGCG ACCGAAGAAG chr2L:20079063-20079183 34 1.16e-05 CCCTTTAAAA GGAGGGGG GTTTTGTTGT chr3L:19630921-19631041 62 2.38e-05 GTTGGGAGCG GGAAGGGG TGGAGTACAG chr2L:5944802-5944922 27 2.38e-05 TAATTGGACA GGCAGGCG ATAAGCAGGC chr2R:24293599-24293719 10 2.38e-05 TGTGCGTCG GGAAGGGG GGAAATTACT chr3L:15234633-15234753 7 2.38e-05 GGAAAC GGCGGGGA GGCACATAGT chr2L:2864802-2864922 62 2.38e-05 CCCCACATTT GGCGGGGA GTATCATGCT chr3R:10150743-10150863 43 2.38e-05 GAGGTAATCA GGCAGGCG CATGCGCAGC chr2R:6786812-6786932 71 3.08e-05 TGTGTGAGTT GGCGAGGG GGTGTGTATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCRGGGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:13236749-13236869 2.3e-06 100_[+1]_12 chrX:6592180-6592300 2.3e-06 43_[+1]_69 chrX:19665994-19666114 5.8e-06 25_[+1]_87 chr3R:23922316-23922436 1.2e-05 74_[+1]_38 chr3R:29493409-29493529 1.2e-05 53_[+1]_59 chr2L:20079063-20079183 1.2e-05 33_[+1]_79 chr3L:19630921-19631041 2.4e-05 61_[+1]_51 chr2L:5944802-5944922 2.4e-05 26_[+1]_86 chr2R:24293599-24293719 2.4e-05 9_[+1]_103 chr3L:15234633-15234753 2.4e-05 6_[+1]_106 chr2L:2864802-2864922 2.4e-05 61_[+1]_51 chr3R:10150743-10150863 2.4e-05 42_[+1]_70 chr2R:6786812-6786932 3.1e-05 70_[+1]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCRGGGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCRGGGG width=8 seqs=13 chr3L:13236749-13236869 ( 101) GGCGGGGG 1 chrX:6592180-6592300 ( 44) GGCGGGGG 1 chrX:19665994-19666114 ( 26) GGCAGGGG 1 chr3R:23922316-23922436 ( 75) GGAGGGGG 1 chr3R:29493409-29493529 ( 54) GGCGGGCG 1 chr2L:20079063-20079183 ( 34) GGAGGGGG 1 chr3L:19630921-19631041 ( 62) GGAAGGGG 1 chr2L:5944802-5944922 ( 27) GGCAGGCG 1 chr2R:24293599-24293719 ( 10) GGAAGGGG 1 chr3L:15234633-15234753 ( 7) GGCGGGGA 1 chr2L:2864802-2864922 ( 62) GGCGGGGA 1 chr3R:10150743-10150863 ( 43) GGCAGGCG 1 chr2R:6786812-6786932 ( 71) GGCGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCRGGGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 6.4e+003 -1035 -1035 234 -1035 -1035 -1035 234 -1035 4 180 -1035 -1035 36 -1035 164 -1035 -196 -1035 223 -1035 -1035 -1035 234 -1035 -1035 21 196 -1035 -96 -1035 210 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCRGGGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 6.4e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.307692 0.692308 0.000000 0.000000 0.384615 0.000000 0.615385 0.000000 0.076923 0.000000 0.923077 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.230769 0.769231 0.000000 0.153846 0.000000 0.846154 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCRGGGG MEME-1 regular expression -------------------------------------------------------------------------------- GG[CA][GA]GG[GC]G -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCCGCC MEME-2 width = 8 sites = 2 llr = 26 E-value = 5.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCGCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:aa:aa probability G a:a::a:: matrix T :::::::: bits 2.3 ******** 2.1 ******** 1.9 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCCGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCGCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:14028832-14028952 14 2.39e-06 GTTCTCCATG GCGCCGCC GTTTGTTTGA chrX:19308105-19308225 64 2.39e-06 ATTTGTTGTT GCGCCGCC TTGCCGCGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCGCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14028832-14028952 2.4e-06 13_[+2]_99 chrX:19308105-19308225 2.4e-06 63_[+2]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCGCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCGCC width=8 seqs=2 chr3L:14028832-14028952 ( 14) GCGCCGCC 1 chrX:19308105-19308225 ( 64) GCGCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCGCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 5.0e+004 -765 -765 234 -765 -765 232 -765 -765 -765 -765 234 -765 -765 232 -765 -765 -765 232 -765 -765 -765 -765 234 -765 -765 232 -765 -765 -765 232 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCGCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCGCC MEME-2 regular expression -------------------------------------------------------------------------------- GCGCCGCC -------------------------------------------------------------------------------- Time 13.78 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCCGCG MEME-3 width = 8 sites = 3 llr = 39 E-value = 2.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCCGCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:aa:a: probability G ::a::a:a matrix T :::::::: bits 2.3 ******** 2.1 ******** 1.9 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:3158706-3158826 50 2.39e-06 GATTCGAGCG CCGCCGCG CTGTTTATTA chr2R:14302807-14302927 38 2.39e-06 CGGAAATTTC CCGCCGCG TTTAAACTTC chr3R:6816325-6816445 25 2.39e-06 GCTCTACGTT CCGCCGCG CTCGGCGTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3158706-3158826 2.4e-06 49_[+3]_63 chr2R:14302807-14302927 2.4e-06 37_[+3]_75 chr3R:6816325-6816445 2.4e-06 24_[+3]_88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCCGCG width=8 seqs=3 chr2L:3158706-3158826 ( 50) CCGCCGCG 1 chr2R:14302807-14302927 ( 38) CCGCCGCG 1 chr3R:6816325-6816445 ( 25) CCGCCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 2.8e+004 -823 233 -823 -823 -823 233 -823 -823 -823 -823 234 -823 -823 233 -823 -823 -823 233 -823 -823 -823 -823 234 -823 -823 233 -823 -823 -823 -823 234 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.8e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCG MEME-3 regular expression -------------------------------------------------------------------------------- CCGCCGCG -------------------------------------------------------------------------------- Time 20.10 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCWGCCG MEME-4 width = 8 sites = 11 llr = 116 E-value = 2.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCWGCCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::4:::: pos.-specific C 2:a::aa1 probability G 1a::a::9 matrix T 7::6:::: bits 2.3 ** *** 2.1 ** *** 1.9 ** **** 1.6 ** **** Relative 1.4 ** **** Entropy 1.2 ** **** (15.1 bits) 0.9 ** **** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGCTGCCG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGCCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:14028832-14028952 83 5.57e-06 TTGTTATTGC TGCTGCCG CGGCTGCTCG chr2R:23725946-23726066 53 5.57e-06 TTCGGCGCAC TGCTGCCG TCTCGCTCGC chr2R:14302807-14302927 107 5.57e-06 ATTAGCTTAG TGCTGCCG TACTCA chrX:7300422-7300542 111 5.57e-06 TTTCCATTTT TGCTGCCG CT chr3L:1546568-1546688 26 1.11e-05 TCTCGCTTTT TGCAGCCG GCAAGACGAC chr2L:10276865-10276985 56 1.11e-05 CAATAGAACT TGCAGCCG TCGTGTCGGC chrX:20423831-20423951 103 1.11e-05 TATAATACGC TGCAGCCG AAATTTTAAA chrX:10602374-10602494 101 1.47e-05 TCTGCCGCTT CGCTGCCG GCTTCTTCGT chr2L:16523187-16523307 109 1.47e-05 ACGCTGACTT CGCTGCCG GCGT chr2L:6252383-6252503 72 2.55e-05 CTTATCAACA GGCAGCCG CGCTCCGTCT chr2R:17062650-17062770 28 3.11e-05 GCTTGAACAA TGCTGCCC AGCAGAATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGCCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14028832-14028952 5.6e-06 82_[+4]_30 chr2R:23725946-23726066 5.6e-06 52_[+4]_60 chr2R:14302807-14302927 5.6e-06 106_[+4]_6 chrX:7300422-7300542 5.6e-06 110_[+4]_2 chr3L:1546568-1546688 1.1e-05 25_[+4]_87 chr2L:10276865-10276985 1.1e-05 55_[+4]_57 chrX:20423831-20423951 1.1e-05 102_[+4]_10 chrX:10602374-10602494 1.5e-05 100_[+4]_12 chr2L:16523187-16523307 1.5e-05 108_[+4]_4 chr2L:6252383-6252503 2.5e-05 71_[+4]_41 chr2R:17062650-17062770 3.1e-05 27_[+4]_85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGCCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCWGCCG width=8 seqs=11 chr3L:14028832-14028952 ( 83) TGCTGCCG 1 chr2R:23725946-23726066 ( 53) TGCTGCCG 1 chr2R:14302807-14302927 ( 107) TGCTGCCG 1 chrX:7300422-7300542 ( 111) TGCTGCCG 1 chr3L:1546568-1546688 ( 26) TGCAGCCG 1 chr2L:10276865-10276985 ( 56) TGCAGCCG 1 chrX:20423831-20423951 ( 103) TGCAGCCG 1 chrX:10602374-10602494 ( 101) CGCTGCCG 1 chr2L:16523187-16523307 ( 109) CGCTGCCG 1 chr2L:6252383-6252503 ( 72) GGCAGCCG 1 chr2R:17062650-17062770 ( 28) TGCTGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGCCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3527 E= 2.3e+003 -1010 -13 -111 126 -1010 -1010 234 -1010 -1010 233 -1010 -1010 28 -1010 -1010 106 -1010 -1010 234 -1010 -1010 233 -1010 -1010 -1010 233 -1010 -1010 -1010 -113 221 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGCCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.3e+003 0.000000 0.181818 0.090909 0.727273 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.363636 0.000000 0.000000 0.636364 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.090909 0.909091 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCWGCCG MEME-4 regular expression -------------------------------------------------------------------------------- TGC[TA]GCCG -------------------------------------------------------------------------------- Time 26.38 secs. ******************************************************************************** ******************************************************************************** MOTIF CAMAMACA MEME-5 width = 8 sites = 32 llr = 280 E-value = 4.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAMAMACA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :96a48:a pos.-specific C a:4:6:a: probability G :1:::2:: matrix T :::::::: bits 2.3 * * 2.1 * * 1.9 * * 1.6 * * ** Relative 1.4 * * ** Entropy 1.2 ** ***** (12.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAAACACA consensus C AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMAMACA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:9701414-9701534 48 1.27e-05 ATTATGCAAT CACACACA TTTTGTTCCA chrX:10744771-10744891 97 1.27e-05 AACCACTACA CACACACA CACTCGGCCT chr2L:19069677-19069797 41 1.27e-05 GATGGCCACA CACACACA CACGGCAACA chr3R:9725121-9725241 37 1.27e-05 CACATTCGCA CACACACA CATATGCGAA chr3R:5861628-5861748 56 3.19e-05 TTCCACAATT CAAACACA CCTCTTTAGT chr2L:13838795-13838915 26 3.19e-05 GGTGTTTATG CAAACACA AAGGCGTGTT chr2L:18136726-18136846 23 3.19e-05 ATGTAGTGTG CAAACACA AATATTAGCA chr3R:18438342-18438462 63 3.19e-05 GCTATGAATG CAAACACA AAGTTGTTGC chr2R:7167954-7168074 29 3.19e-05 AACACGAGCA CAAACACA AATAGGCATC chr3R:28117635-28117755 61 3.19e-05 AAACATCATA CAAACACA TCCAGTTCAT chr3R:29757349-29757469 105 3.19e-05 GCCTCCAAGG CAAACACA AAGAGCGA chr2L:6700811-6700931 44 5.93e-05 TCTGTTTGCC CACAAACA TTGGCAATCG chrX:5420803-5420923 72 5.93e-05 GCAGCACATG CACAAACA GGGCTGCCCA chr3R:23922316-23922436 40 5.93e-05 TCAGCGACAA CACAAACA ACACGAGAGC chr3L:5789861-5789981 28 5.93e-05 cacatttaca cacaaaca aaaaagcaat chr2R:19631115-19631235 43 5.93e-05 CGAGGACAGA CACAAACA ACAAACAAAC chr2L:12463163-12463283 23 1.01e-04 AAGTCAACAA CAAAAACA ATGCATATTC chr2L:7037975-7038095 104 1.01e-04 TTTGCCAGCA CAAACGCA CACAGTGCA chr2R:10045586-10045706 97 1.01e-04 CCAACCAAAA CAAACGCA CACAAATAAA chr2R:22387642-22387762 80 1.01e-04 GTTTGGCCTA CAAAAACA ACCAGAGTCA chr2L:6462316-6462436 26 1.01e-04 GCGATCAAGA CAAACGCA TTGTTTGCCC chr2L:16523187-16523307 90 1.01e-04 AATGAGTAAA CAAAAACA AACGCTGACT chr3R:5613244-5613364 46 1.01e-04 AATCGATAGA CAAAAACA GTTATTGGGC chrX:6982225-6982345 69 1.01e-04 TTGAATTCAC CAAAAACA GTAGATGCAT chr3R:31603833-31603953 8 1.01e-04 ACTTGAG CAAACGCA AAGCCCGACA chr3L:4353884-4354004 26 1.09e-04 TGTCGCATGC CGCACACA GCGAAAAAAA chr3R:29493409-29493529 7 1.09e-04 CATACA CGCACACA GGCGCACTGC chr3L:19630921-19631041 40 1.22e-04 ATAAGATAAA CGAACACA GGACGTTGGG chr3R:10150743-10150863 76 1.22e-04 GTGGCCAAAA CGAACACA Tttctctttg chr3L:9968355-9968475 113 1.34e-04 ATGGCGCACC CACAAGCA chrX:13257207-13257327 92 1.34e-04 CAAGCAGACG CACAAGCA GTTCCACTAC chrX:17578299-17578419 65 1.53e-04 TGTTTAAAAA CAAAAGCA CACGAATACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMAMACA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:9701414-9701534 1.3e-05 47_[+5]_65 chrX:10744771-10744891 1.3e-05 96_[+5]_16 chr2L:19069677-19069797 1.3e-05 40_[+5]_72 chr3R:9725121-9725241 1.3e-05 36_[+5]_76 chr3R:5861628-5861748 3.2e-05 55_[+5]_57 chr2L:13838795-13838915 3.2e-05 25_[+5]_87 chr2L:18136726-18136846 3.2e-05 22_[+5]_90 chr3R:18438342-18438462 3.2e-05 62_[+5]_50 chr2R:7167954-7168074 3.2e-05 28_[+5]_84 chr3R:28117635-28117755 3.2e-05 60_[+5]_52 chr3R:29757349-29757469 3.2e-05 104_[+5]_8 chr2L:6700811-6700931 5.9e-05 43_[+5]_69 chrX:5420803-5420923 5.9e-05 71_[+5]_41 chr3R:23922316-23922436 5.9e-05 39_[+5]_73 chr3L:5789861-5789981 5.9e-05 27_[+5]_85 chr2R:19631115-19631235 5.9e-05 42_[+5]_70 chr2L:12463163-12463283 0.0001 22_[+5]_90 chr2L:7037975-7038095 0.0001 103_[+5]_9 chr2R:10045586-10045706 0.0001 96_[+5]_16 chr2R:22387642-22387762 0.0001 79_[+5]_33 chr2L:6462316-6462436 0.0001 25_[+5]_87 chr2L:16523187-16523307 0.0001 89_[+5]_23 chr3R:5613244-5613364 0.0001 45_[+5]_67 chrX:6982225-6982345 0.0001 68_[+5]_44 chr3R:31603833-31603953 0.0001 7_[+5]_105 chr3L:4353884-4354004 0.00011 25_[+5]_87 chr3R:29493409-29493529 0.00011 6_[+5]_106 chr3L:19630921-19631041 0.00012 39_[+5]_73 chr3R:10150743-10150863 0.00012 75_[+5]_37 chr3L:9968355-9968475 0.00013 112_[+5] chrX:13257207-13257327 0.00013 91_[+5]_21 chrX:17578299-17578419 0.00015 64_[+5]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMAMACA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAMAMACA width=8 seqs=32 chr3R:9701414-9701534 ( 48) CACACACA 1 chrX:10744771-10744891 ( 97) CACACACA 1 chr2L:19069677-19069797 ( 41) CACACACA 1 chr3R:9725121-9725241 ( 37) CACACACA 1 chr3R:5861628-5861748 ( 56) CAAACACA 1 chr2L:13838795-13838915 ( 26) CAAACACA 1 chr2L:18136726-18136846 ( 23) CAAACACA 1 chr3R:18438342-18438462 ( 63) CAAACACA 1 chr2R:7167954-7168074 ( 29) CAAACACA 1 chr3R:28117635-28117755 ( 61) CAAACACA 1 chr3R:29757349-29757469 ( 105) CAAACACA 1 chr2L:6700811-6700931 ( 44) CACAAACA 1 chrX:5420803-5420923 ( 72) CACAAACA 1 chr3R:23922316-23922436 ( 40) CACAAACA 1 chr3L:5789861-5789981 ( 28) CACAAACA 1 chr2R:19631115-19631235 ( 43) CACAAACA 1 chr2L:12463163-12463283 ( 23) CAAAAACA 1 chr2L:7037975-7038095 ( 104) CAAACGCA 1 chr2R:10045586-10045706 ( 97) CAAACGCA 1 chr2R:22387642-22387762 ( 80) CAAAAACA 1 chr2L:6462316-6462436 ( 26) CAAACGCA 1 chr2L:16523187-16523307 ( 90) CAAAAACA 1 chr3R:5613244-5613364 ( 46) CAAAAACA 1 chrX:6982225-6982345 ( 69) CAAAAACA 1 chr3R:31603833-31603953 ( 8) CAAACGCA 1 chr3L:4353884-4354004 ( 26) CGCACACA 1 chr3R:29493409-29493529 ( 7) CGCACACA 1 chr3L:19630921-19631041 ( 40) CGAACACA 1 chr3R:10150743-10150863 ( 76) CGAACACA 1 chr3L:9968355-9968475 ( 113) CACAAGCA 1 chrX:13257207-13257327 ( 92) CACAAGCA 1 chrX:17578299-17578419 ( 65) CAAAAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMAMACA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 4.0e+001 -1164 233 -1164 -1164 154 -1164 -66 -1164 98 103 -1164 -1164 174 -1164 -1164 -1164 44 158 -1164 -1164 138 -1164 15 -1164 -1164 233 -1164 -1164 174 -1164 -1164 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMAMACA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 4.0e+001 0.000000 1.000000 0.000000 0.000000 0.875000 0.000000 0.125000 0.000000 0.593750 0.406250 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.406250 0.593750 0.000000 0.000000 0.781250 0.000000 0.218750 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAMAMACA MEME-5 regular expression -------------------------------------------------------------------------------- CA[AC]A[CA][AG]CA -------------------------------------------------------------------------------- Time 32.63 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:4654709-4654829 5.87e-01 120 chr3R:31603833-31603953 2.04e-03 111_[+4(8.64e-05)]_1 chr3R:29757349-29757469 1.13e-01 104_[+5(3.19e-05)]_8 chr3R:23181076-23181196 9.32e-01 120 chr2L:2133097-2133217 5.56e-02 104_[+2(7.96e-05)]_8 chr2R:14357231-14357351 8.75e-01 120 chrX:15910073-15910193 2.79e-01 120 chr2L:2038729-2038849 8.49e-01 120 chr2R:6464965-6465085 3.88e-01 120 chr3L:11107575-11107695 9.27e-01 120 chr3L:11286597-11286717 9.40e-01 120 chr3R:9725121-9725241 1.52e-02 34_[+5(1.27e-05)]_78 chr3R:21130173-21130293 8.86e-01 120 chr3L:17052571-17052691 9.31e-01 120 chrX:11391698-11391818 9.30e-01 120 chr2R:6984030-6984150 9.95e-01 120 chr3L:8440887-8441007 1.00e+00 120 chr2R:17062650-17062770 4.16e-02 27_[+4(3.11e-05)]_85 chrX:6982225-6982345 5.18e-01 120 chr2R:6938572-6938692 7.65e-01 120 chr2L:13747953-13748073 5.41e-01 120 chr2R:14486995-14487115 4.80e-01 120 chr3R:10150743-10150863 6.42e-05 42_[+1(2.38e-05)]_3_[+2(7.96e-05)]_\ 59 chr3R:22526484-22526604 4.17e-01 120 chr3R:26242573-26242693 1.29e-01 120 chr2R:14488720-14488840 8.49e-01 120 chr2R:6786812-6786932 2.46e-01 70_[+1(3.08e-05)]_42 chr3R:5613244-5613364 2.63e-02 120 chr2L:16523187-16523307 4.32e-04 108_[+4(1.47e-05)]_4 chr3L:3080646-3080766 4.81e-02 120 chr3R:10677646-10677766 9.92e-01 120 chr2L:9775394-9775514 2.95e-01 120 chr2L:20079063-20079183 4.73e-02 33_[+1(1.16e-05)]_79 chr2R:18334397-18334517 9.27e-01 120 chr3R:31636687-31636807 4.76e-01 120 chr2R:19631115-19631235 1.32e-01 19_[+5(5.93e-05)]_15_[+5(5.93e-05)]_\ 70 chr2L:19949777-19949897 6.08e-01 120 chr2R:17548477-17548597 2.19e-01 120 chr3R:31610980-31611100 1.03e-01 120 chr2L:6462316-6462436 4.29e-02 120 chr3R:9529479-9529599 9.92e-01 120 chrX:17578299-17578419 5.04e-01 120 chr3R:28552361-28552481 9.04e-01 120 chr2L:1650184-1650304 9.07e-01 120 chr2R:24099127-24099247 1.39e-02 6_[+2(7.96e-05)]_106 chrX:5977260-5977380 7.23e-01 120 chr2L:10497509-10497629 6.26e-01 120 chr3R:14577225-14577345 7.97e-02 120 chrX:6310522-6310642 6.92e-01 120 chr2R:17792869-17792989 3.17e-02 120 chr3R:28117635-28117755 1.04e-01 60_[+5(3.19e-05)]_52 chr2L:19069677-19069797 4.56e-02 36_[+5(1.27e-05)]_76 chr3R:12728409-12728529 9.47e-01 120 chr3R:16309444-16309564 7.91e-01 120 chr3L:13022504-13022624 5.44e-01 120 chr3R:9056808-9056928 9.82e-01 120 chr3R:27557124-27557244 1.16e-01 4_[+4(8.64e-05)]_108 chr2L:5225738-5225858 8.50e-01 120 chr2R:10555608-10555728 6.47e-01 120 chr2L:7175948-7176068 7.06e-01 120 chr3R:26436722-26436842 9.66e-01 120 chrX:4505499-4505619 9.66e-01 120 chrX:18407436-18407556 9.78e-01 120 chr2L:5207315-5207435 6.24e-01 120 chr3L:20518235-20518355 8.45e-01 120 chr2R:22368099-22368219 9.69e-01 120 chr3L:8584236-8584356 6.25e-01 120 chr3L:2457804-2457924 4.54e-03 2_[+2(7.96e-05)]_110 chr3R:26555934-26556054 1.00e+00 120 chr3R:29493409-29493529 3.83e-03 53_[+1(1.16e-05)]_59 chr3R:24333308-24333428 5.22e-01 120 chr3L:20731015-20731135 2.37e-01 120 chr3L:18144783-18144903 9.89e-02 120 chrX:20423831-20423951 9.34e-02 102_[+4(1.11e-05)]_10 chr2L:17388201-17388321 9.85e-01 120 chrX:20506092-20506212 9.92e-01 120 chrX:7300422-7300542 3.31e-03 110_[+4(5.57e-06)]_2 chr3L:3983504-3983624 8.55e-01 120 chr2R:24893701-24893821 1.00e+00 120 chrX:3748956-3749076 1.45e-01 60_[+1(6.43e-05)]_52 chr2R:7167954-7168074 1.16e-03 28_[+5(3.19e-05)]_84 chr2R:14488466-14488586 6.40e-01 120 chrX:487610-487730 5.83e-01 120 chr3R:18315369-18315489 2.90e-01 120 chr3L:9372714-9372834 6.01e-01 120 chr3L:18838003-18838123 6.72e-01 120 chr3L:785827-785947 9.75e-01 120 chr3L:3411877-3411997 9.95e-01 120 chrX:10744771-10744891 5.92e-03 94_[+5(1.27e-05)]_18 chr3L:16582869-16582989 7.68e-01 120 chr2L:14619754-14619874 8.40e-01 120 chr2L:16817723-16817843 1.00e+00 120 chr3R:20273709-20273829 3.44e-01 120 chr2R:22387642-22387762 3.19e-01 120 chr2L:7628532-7628652 8.45e-01 120 chr3R:14002226-14002346 1.00e+00 120 chr2L:12707508-12707628 9.04e-01 120 chr2R:10045586-10045706 2.94e-01 120 chr2L:8522112-8522232 9.49e-02 120 chr3R:7129478-7129598 5.25e-01 120 chrX:13253204-13253324 9.99e-01 120 chr2R:13586368-13586488 4.63e-01 120 chr2R:6652859-6652979 7.12e-01 120 chrX:3538916-3539036 5.32e-01 120 chr3R:10024142-10024262 9.24e-01 120 chr2L:6252383-6252503 6.21e-04 71_[+4(2.55e-05)]_41 chr3L:94173-94293 9.04e-01 120 chr2L:10231248-10231368 9.09e-01 120 chr3L:11258529-11258649 9.86e-01 120 chr3R:10699098-10699218 9.85e-01 120 chr2L:22168593-22168713 1.14e-01 120 chr3R:16255340-16255460 1.60e-01 120 chr2L:5324873-5324993 3.28e-01 120 chrX:1476901-1477021 8.81e-01 120 chr3R:31220854-31220974 4.34e-02 53_[+4(3.66e-05)]_59 chr3R:15286205-15286325 6.87e-01 120 chr2L:19121036-19121156 9.04e-01 120 chr2L:283258-283378 3.66e-01 120 chr3R:6816325-6816445 5.54e-04 24_[+3(2.39e-06)]_65_[+3(7.96e-05)]_\ 15 chr2L:2906192-2906312 9.90e-01 120 chrX:9119393-9119513 9.97e-01 120 chr2R:16344368-16344488 2.50e-01 120 chr3L:4353884-4354004 1.88e-01 120 chr3R:30802319-30802439 5.49e-01 120 chr3L:12741748-12741868 8.89e-01 120 chr2L:20066381-20066501 7.04e-01 120 chr2L:4838611-4838731 8.56e-01 120 chr3L:5789861-5789981 2.82e-01 27_[+5(5.93e-05)]_85 chr3R:18438342-18438462 1.82e-02 62_[+5(3.19e-05)]_50 chr2R:14136931-14137051 9.98e-01 120 chr2R:11792755-11792875 7.83e-02 120 chr3L:3851983-3852103 7.39e-01 120 chrX:2166259-2166379 8.82e-01 120 chr2R:22062506-22062626 7.92e-01 120 chr3R:9701414-9701534 2.98e-02 47_[+5(1.27e-05)]_65 chr3L:10866723-10866843 5.12e-01 120 chr2R:5128342-5128462 9.54e-01 120 chr3R:26952335-26952455 5.75e-01 120 chrX:18239444-18239564 3.09e-01 120 chrX:18405166-18405286 1.24e-01 120 chr2L:18136726-18136846 2.15e-01 22_[+5(3.19e-05)]_90 chr2L:7037975-7038095 9.77e-03 17_[+4(3.66e-05)]_95 chrX:19665994-19666114 4.10e-03 25_[+1(5.78e-06)]_87 chr3L:14706787-14706907 2.17e-01 120 chrX:2294640-2294760 6.14e-01 120 chr2L:2864802-2864922 6.95e-02 61_[+1(2.38e-05)]_51 chr2R:5122220-5122340 9.45e-01 120 chr2L:12463163-12463283 1.44e-02 120 chr3L:15234633-15234753 1.47e-01 6_[+1(2.38e-05)]_106 chr3L:15691261-15691381 9.84e-01 120 chr3R:31309410-31309530 2.48e-01 120 chrX:20631320-20631440 7.07e-01 120 chr3L:3305556-3305676 2.03e-01 120 chr2R:22540078-22540198 2.36e-01 120 chr3L:361381-361501 2.44e-02 120 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-------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************