******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17912.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:15243080-15243200 1.0000 120 chr2R:24057188-24057308 1.0000 120 chrX:1481620-1481740 1.0000 120 chr2R:9542454-9542574 1.0000 120 chr3L:9509998-9510118 1.0000 120 chr3R:31218684-31218804 1.0000 120 chr2L:14495578-14495698 1.0000 120 chr3L:3193531-3193651 1.0000 120 chr2R:13336744-13336864 1.0000 120 chr3R:31608137-31608257 1.0000 120 chr2R:15304819-15304939 1.0000 120 chr3L:11512545-11512665 1.0000 120 chr2R:14486970-14487090 1.0000 120 chr2R:25190586-25190706 1.0000 120 chr3R:19571317-19571437 1.0000 120 chr2R:9439867-9439987 1.0000 120 chr3L:19992112-19992232 1.0000 120 chr2R:5698364-5698484 1.0000 120 chrX:521809-521929 1.0000 120 chr3L:23099718-23099838 1.0000 120 chr3R:6814053-6814173 1.0000 120 chr2R:12670150-12670270 1.0000 120 chr2L:482615-482735 1.0000 120 chr2L:15764183-15764303 1.0000 120 chr3L:6963418-6963538 1.0000 120 chr3L:21055961-21056081 1.0000 120 chr3R:15290134-15290254 1.0000 120 chr3R:7087221-7087341 1.0000 120 chr3R:5599641-5599761 1.0000 120 chr2L:7528213-7528333 1.0000 120 chr2L:14024516-14024636 1.0000 120 chr3L:16050095-16050215 1.0000 120 chr3R:17007483-17007603 1.0000 120 chr2R:9577433-9577553 1.0000 120 chr2L:6252379-6252499 1.0000 120 chr3R:15242880-15243000 1.0000 120 chr3L:14037819-14037939 1.0000 120 chr3R:31240213-31240333 1.0000 120 chr2R:22319396-22319516 1.0000 120 chr3L:20004737-20004857 1.0000 120 chr3R:11762542-11762662 1.0000 120 chr3R:20549088-20549208 1.0000 120 chr3L:1969994-1970114 1.0000 120 chr3R:11993393-11993513 1.0000 120 chr3L:10734637-10734757 1.0000 120 chr2L:13813759-13813879 1.0000 120 chr2L:14395708-14395828 1.0000 120 chr3L:5749754-5749874 1.0000 120 chr2L:94857-94977 1.0000 120 chr2R:18134146-18134266 1.0000 120 chr3R:4450734-4450854 1.0000 120 chr3R:14019487-14019607 1.0000 120 chr2L:7856508-7856628 1.0000 120 chr3L:14671711-14671831 1.0000 120 chr3R:27253989-27254109 1.0000 120 chr2R:6244981-6245101 1.0000 120 chr3R:4804481-4804601 1.0000 120 chrX:1460626-1460746 1.0000 120 chr3L:16670327-16670447 1.0000 120 chr2L:20004447-20004567 1.0000 120 chr3L:1331675-1331795 1.0000 120 chr3L:3054999-3055119 1.0000 120 chr3L:9380695-9380815 1.0000 120 chr3L:18755367-18755487 1.0000 120 chr3L:876871-876991 1.0000 120 chr3R:10186195-10186315 1.0000 120 chr3R:20634669-20634789 1.0000 120 chr3L:20399176-20399296 1.0000 120 chr2R:19469003-19469123 1.0000 120 chr2L:19817253-19817373 1.0000 120 chr3L:17531580-17531700 1.0000 120 chr2L:6479759-6479879 1.0000 120 chr3R:13382490-13382610 1.0000 120 chr3L:19907468-19907588 1.0000 120 chr3L:5360809-5360929 1.0000 120 chr2R:13560274-13560394 1.0000 120 chr2L:22148504-22148624 1.0000 120 chr3L:23095143-23095263 1.0000 120 chr3L:11248489-11248609 1.0000 120 chr3L:3198459-3198579 1.0000 120 chr3R:7779767-7779887 1.0000 120 chr3L:15161681-15161801 1.0000 120 chr2R:21193450-21193570 1.0000 120 chr3R:26137402-26137522 1.0000 120 chr3R:14013021-14013141 1.0000 120 chr3R:22573760-22573880 1.0000 120 chr3L:10886020-10886140 1.0000 120 chr3L:3901988-3902108 1.0000 120 chrX:4702971-4703091 1.0000 120 chr4:136175-136295 1.0000 120 chr2L:4886732-4886852 1.0000 120 chr3R:19153590-19153710 1.0000 120 chr2R:21057683-21057803 1.0000 120 chr2R:24963311-24963431 1.0000 120 chr2R:15373035-15373155 1.0000 120 chr2R:21648178-21648298 1.0000 120 chr3L:11788301-11788421 1.0000 120 chr4:989562-989682 1.0000 120 chr3L:19073318-19073438 1.0000 120 chr3L:6140321-6140441 1.0000 120 chr3R:13802322-13802442 1.0000 120 chr3L:16985635-16985755 1.0000 120 chr3R:22631309-22631429 1.0000 120 chrX:620165-620285 1.0000 120 chr2L:4187742-4187862 1.0000 120 chr3L:18781581-18781701 1.0000 120 chrX:19306742-19306862 1.0000 120 chr3L:12526419-12526539 1.0000 120 chr2R:7474789-7474909 1.0000 120 chr3L:14205358-14205478 1.0000 120 chr2L:10341792-10341912 1.0000 120 chr2R:7451068-7451188 1.0000 120 chr3L:18753943-18754063 1.0000 120 chrX:18363552-18363672 1.0000 120 chr3L:20006824-20006944 1.0000 120 chr3L:21036436-21036556 1.0000 120 chr3R:12626747-12626867 1.0000 120 chr3L:4193865-4193985 1.0000 120 chr3R:13320027-13320147 1.0000 120 chrX:2469977-2470097 1.0000 120 chrX:12749993-12750113 1.0000 120 chr3L:26012591-26012711 1.0000 120 chr2R:24295265-24295385 1.0000 120 chr2R:19414604-19414724 1.0000 120 chr3R:19467631-19467751 1.0000 120 chrX:1387305-1387425 1.0000 120 chr3R:23947143-23947263 1.0000 120 chrX:13338236-13338356 1.0000 120 chr2R:6811728-6811848 1.0000 120 chr3L:11720824-11720944 1.0000 120 chr3L:20516629-20516749 1.0000 120 chr2L:10004776-10004896 1.0000 120 chr2L:11210342-11210462 1.0000 120 chr2R:21702668-21702788 1.0000 120 chr3L:19191976-19192096 1.0000 120 chr3R:8979987-8980107 1.0000 120 chrX:12029002-12029122 1.0000 120 chrX:15081158-15081278 1.0000 120 chr3R:8805546-8805666 1.0000 120 chr3R:15286123-15286243 1.0000 120 chr2L:1723169-1723289 1.0000 120 chr2L:6448267-6448387 1.0000 120 chr2R:21659977-21660097 1.0000 120 chr2R:8614611-8614731 1.0000 120 chrX:14954011-14954131 1.0000 120 chr3L:4092850-4092970 1.0000 120 chr3L:20000992-20001112 1.0000 120 chr3R:24134728-24134848 1.0000 120 chr3L:7641631-7641751 1.0000 120 chr2R:24779806-24779926 1.0000 120 chr3R:21629892-21630012 1.0000 120 chr3L:4254714-4254834 1.0000 120 chrX:5992311-5992431 1.0000 120 chr3R:31609044-31609164 1.0000 120 chr2L:3108380-3108500 1.0000 120 chr2L:17260705-17260825 1.0000 120 chr2R:14217680-14217800 1.0000 120 chr3L:11003069-11003189 1.0000 120 chr2R:9565861-9565981 1.0000 120 chr3L:20186576-20186696 1.0000 120 chr3L:9714726-9714846 1.0000 120 chr3L:19268932-19269052 1.0000 120 chr3R:6664520-6664640 1.0000 120 chr3L:11358829-11358949 1.0000 120 chr2L:10298452-10298572 1.0000 120 chr3L:8741329-8741449 1.0000 120 chr2R:9546583-9546703 1.0000 120 chr3L:18020998-18021118 1.0000 120 chr2L:14410426-14410546 1.0000 120 chr3L:8683903-8684023 1.0000 120 chr2R:23872191-23872311 1.0000 120 chr3L:4025863-4025983 1.0000 120 chr3L:7866067-7866187 1.0000 120 chr3R:8356683-8356803 1.0000 120 chr2L:10239006-10239126 1.0000 120 chr3R:16957907-16958027 1.0000 120 chr2L:8697894-8698014 1.0000 120 chr2R:7352561-7352681 1.0000 120 chrX:17077890-17078010 1.0000 120 chrX:16275858-16275978 1.0000 120 chr4:482752-482872 1.0000 120 chr3L:14761913-14762033 1.0000 120 chr3L:8968521-8968641 1.0000 120 chr2L:8009438-8009558 1.0000 120 chr2R:14031621-14031741 1.0000 120 chr3L:960722-960842 1.0000 120 chr2L:4829201-4829321 1.0000 120 chr3L:8986613-8986733 1.0000 120 chr3L:3390691-3390811 1.0000 120 chr2R:17699206-17699326 1.0000 120 chr2R:23988453-23988573 1.0000 120 chr2R:9143881-9144001 1.0000 120 chrX:18082859-18082979 1.0000 120 chrX:17305686-17305806 1.0000 120 chr3R:21377126-21377246 1.0000 120 chr3R:15243630-15243750 1.0000 120 chr3R:11338415-11338535 1.0000 120 chr2L:2236904-2237024 1.0000 120 chr2R:19413312-19413432 1.0000 120 chr2R:24337638-24337758 1.0000 120 chrX:17294292-17294412 1.0000 120 chr3R:9944522-9944642 1.0000 120 chr3L:7837094-7837214 1.0000 120 chr3R:21163385-21163505 1.0000 120 chrX:17820396-17820516 1.0000 120 chr2R:17536301-17536421 1.0000 120 chr3L:1665030-1665150 1.0000 120 chr3R:20558219-20558339 1.0000 120 chr3R:20252714-20252834 1.0000 120 chr3R:29503527-29503647 1.0000 120 chr4:1146496-1146616 1.0000 120 chr2R:7932316-7932436 1.0000 120 chr3R:9793232-9793352 1.0000 120 chr3L:614911-615031 1.0000 120 chr2L:10964593-10964713 1.0000 120 chrX:8199122-8199242 1.0000 120 chr2L:10238237-10238357 1.0000 120 chr3R:29062910-29063030 1.0000 120 chr3L:20731009-20731129 1.0000 120 chr2R:24187579-24187699 1.0000 120 chr3L:10851468-10851588 1.0000 120 chr2L:19185964-19186084 1.0000 120 chr3R:31610756-31610876 1.0000 120 chr2L:1094812-1094932 1.0000 120 chr3L:8748976-8749096 1.0000 120 chr3R:9157898-9158018 1.0000 120 chr3L:9729943-9730063 1.0000 120 chr2R:24746037-24746157 1.0000 120 chr3L:15141818-15141938 1.0000 120 chr2L:740145-740265 1.0000 120 chr2R:9098462-9098582 1.0000 120 chrX:2653647-2653767 1.0000 120 chr2L:18621501-18621621 1.0000 120 chr3L:12668186-12668306 1.0000 120 chr2R:17683052-17683172 1.0000 120 chrX:11823212-11823332 1.0000 120 chr3L:4134349-4134469 1.0000 120 chr2R:21011907-21012027 1.0000 120 chr2R:9820176-9820296 1.0000 120 chr2R:7805815-7805935 1.0000 120 chr2L:10321718-10321838 1.0000 120 chr2L:5547387-5547507 1.0000 120 chr3L:17740528-17740648 1.0000 120 chr3R:23803781-23803901 1.0000 120 chr3L:6217953-6218073 1.0000 120 chr2R:6788348-6788468 1.0000 120 chr3R:24320497-24320617 1.0000 120 chr2L:12093653-12093773 1.0000 120 chr2L:20083544-20083664 1.0000 120 chr3R:4911107-4911227 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG17912/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17912.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.276 C 0.221 G 0.232 T 0.271 Background letter frequencies (from file dataset with add-one prior applied): A 0.276 C 0.221 G 0.232 T 0.271 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTGTKTGY MEME-1 width = 8 sites = 54 llr = 424 E-value = 1.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTKTGY MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::::::: pos.-specific C 2::1:::3 probability G 7:7:6:a: matrix T :a294a:7 bits 2.2 2.0 * ** 1.7 * ** 1.5 * * ** Relative 1.3 * * ** Entropy 1.1 ******* (11.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGTGT consensus T T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKTGY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:12668186-12668306 31 1.56e-05 GTGCATGTGC GTGTGTGT TGGTTTGGAG chr3R:15243630-15243750 101 1.56e-05 ATATGCAtgt gtgtgtgt gcttgtgagg chr3R:21377126-21377246 86 1.56e-05 ctgtgtgtgc gtgtgtgt AAATTACATT chr2L:14410426-14410546 101 1.56e-05 GCAGGTGGGC GTGTGTGT GGCGCTCGTT chr3L:18020998-18021118 87 1.56e-05 TTTTGAGAGT GTGTGTGT GAGCGACACA chr3L:9714726-9714846 58 1.56e-05 gggcatgtgg gtgtgtgt gtgcatgaat chr2L:11210342-11210462 112 1.56e-05 TTGTGCGCCA gtgtgtgt g chrX:1387305-1387425 6 1.56e-05 tatgt gtgtgtgt gtAGATAACT chrX:4702971-4703091 32 1.56e-05 gtttgcgtgt gtgtgtgt gtgtgtgtAA chr3L:5360809-5360929 47 1.56e-05 CTGTATGTGC GTGTGTGT GCATCACGAA chr3R:4804481-4804601 52 1.56e-05 TACTGTACAT GTGTGTGT GCCAAGCGTT chr2R:18134146-18134266 60 1.56e-05 gtgtgtttaa gtgtgtgt atgggtgcgg chr3L:14037819-14037939 68 1.56e-05 CATGCCTTGC GTGTGTGT GCGTAAATGT chr3L:19073318-19073438 16 2.84e-05 CGCATACGCA GTGTGTGC GGCGGTGGGT chr3L:3901988-3902108 35 2.84e-05 CGTGTTGCGA GTGTGTGC ATGTATGTAT chr3R:13382490-13382610 82 2.84e-05 TCTGGTGCAT GTGTGTGC TAGGCACTGG chr3R:13320027-13320147 64 4.66e-05 CGGAGCGCTA GTGTTTGT TTAATTCCGT chr3L:6140321-6140441 38 6.15e-05 GTCAATGCGC GTGTTTGC CTACAAGTAG chr3L:11788301-11788421 44 6.15e-05 TTGAACAAAG GTGTTTGC TTTTGGGATT chr3R:31240213-31240333 3 6.15e-05 TT GTGTTTGC CTTGGCTATT chr2R:9565861-9565981 21 9.46e-05 ATTTATCGAC GTTTGTGT TTACTTAACC chr2L:19817253-19817373 93 9.46e-05 AAGGAAATAG GTTTGTGT CTTTGCTCGA chr3L:21055961-21056081 84 9.46e-05 TGGCAAATGG GTTTGTGT ACCTTGTACC chr2R:9439867-9439987 33 9.46e-05 TTAGACAACG CTGTGTGT ACTTACTTAC chr2L:94857-94977 15 1.22e-04 CCCAGCGCTC GTTTGTGC AAAAAGTTTC chr3R:31218684-31218804 84 1.22e-04 AGTTATGCAA CTGTGTGC CGTCCGTGTT chr3R:11993393-11993513 85 1.40e-04 atatgtatgt atgtgtgt atttacatat chr2L:7528213-7528333 25 1.40e-04 ATCATTCAAC ATGTGTGT TATCAGTGAG chr2R:9098462-9098582 89 1.79e-04 TTACCCATCA CTGTTTGT TTGGAATAGA chr3R:29062910-29063030 2 1.79e-04 T GTTTTTGT TGCTGCGTCC chr3L:960722-960842 63 1.79e-04 ATGCCGAGTG GTTTTTGT TTGCGGAAGG chrX:14954011-14954131 85 1.79e-04 AGGTGGCGCT GTTTTTGT TAAATAATTA chr3L:20516629-20516749 31 1.79e-04 GTTTGTCTTC GTTTTTGT TTACACGTAA chr3R:23947143-23947263 105 1.79e-04 CGGCCACCGA CTGTTTGT TTATTTCA chr2L:482615-482735 42 1.79e-04 CACACAGTTT CTGTTTGT TGGCCTCTGC chr2R:9542454-9542574 90 1.79e-04 GTGACGGTTG GTTTTTGT GTTCCGTCTT chr3L:20186576-20186696 43 1.94e-04 TCGTTTATTT ATGTGTGC TATCCATTGA chr2R:13336744-13336864 101 1.94e-04 TGCTCTGCCC ATGTGTGC GTACATGTAC chr2L:5547387-5547507 1 2.26e-04 . CTGTTTGC ATTCGCGTGT chr2L:1094812-1094932 54 2.26e-04 GACGCACGCA CTGTTTGC ACTGTTTGCC chr3L:4025863-4025983 79 2.26e-04 GCCGTCGAAT GTTTTTGC TTTTATTTAT chr2L:6479759-6479879 52 2.26e-04 GAAGAGCAAA CTGTTTGC GTGGCGATGT chr2R:7805815-7805935 14 2.78e-04 TACAAAGATA ATGTTTGT ATTGCGTCTG chr3L:614911-615031 60 2.78e-04 GTCCGTCGGA CTTTGTGT CCGGCGGCCC chrX:17820396-17820516 73 2.78e-04 AGTAGACAGA GTGCGTGT ATGATGTAAA chr2R:9143881-9144001 51 2.78e-04 TCGTTATCGC CTTTGTGT ATGCGCTTGG chr3R:19153590-19153710 25 2.78e-04 CAAATTGTAA ATGTTTGT TATATTTCTC chr3R:21163385-21163505 83 3.38e-04 ATAACTACGA GTATGTGT TATGAAGTGG chr2R:19414604-19414724 111 3.38e-04 AAACTAGTAA ATGTTTGC AT chr3L:19907468-19907588 38 3.38e-04 ATTGAATGCA GTGCGTGC GAGCGGGATG chr3R:15243080-15243200 105 3.38e-04 GGTTGAGTGA GTATGTGT GAGAGAAA chr3R:19467631-19467751 72 3.95e-04 GTTTTTCGAG GTGCTTGT CTAGTGTTTA chr3L:11358829-11358949 1 5.65e-04 . GTGTGTAC ATGACGCCAA chr2L:10004776-10004896 78 5.65e-04 GCTTTTGATC GTGTGTAC AGCCGCTGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKTGY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:12668186-12668306 1.6e-05 30_[+1]_82 chr3R:15243630-15243750 1.6e-05 100_[+1]_12 chr3R:21377126-21377246 1.6e-05 85_[+1]_27 chr2L:14410426-14410546 1.6e-05 100_[+1]_12 chr3L:18020998-18021118 1.6e-05 86_[+1]_26 chr3L:9714726-9714846 1.6e-05 57_[+1]_55 chr2L:11210342-11210462 1.6e-05 111_[+1]_1 chrX:1387305-1387425 1.6e-05 5_[+1]_107 chrX:4702971-4703091 1.6e-05 31_[+1]_81 chr3L:5360809-5360929 1.6e-05 46_[+1]_66 chr3R:4804481-4804601 1.6e-05 51_[+1]_61 chr2R:18134146-18134266 1.6e-05 59_[+1]_53 chr3L:14037819-14037939 1.6e-05 67_[+1]_45 chr3L:19073318-19073438 2.8e-05 15_[+1]_97 chr3L:3901988-3902108 2.8e-05 34_[+1]_78 chr3R:13382490-13382610 2.8e-05 81_[+1]_31 chr3R:13320027-13320147 4.7e-05 63_[+1]_49 chr3L:6140321-6140441 6.2e-05 37_[+1]_75 chr3L:11788301-11788421 6.2e-05 43_[+1]_69 chr3R:31240213-31240333 6.2e-05 2_[+1]_110 chr2R:9565861-9565981 9.5e-05 20_[+1]_92 chr2L:19817253-19817373 9.5e-05 92_[+1]_20 chr3L:21055961-21056081 9.5e-05 83_[+1]_29 chr2R:9439867-9439987 9.5e-05 32_[+1]_80 chr2L:94857-94977 0.00012 14_[+1]_98 chr3R:31218684-31218804 0.00012 83_[+1]_29 chr3R:11993393-11993513 0.00014 84_[+1]_28 chr2L:7528213-7528333 0.00014 24_[+1]_88 chr2R:9098462-9098582 0.00018 88_[+1]_24 chr3R:29062910-29063030 0.00018 1_[+1]_111 chr3L:960722-960842 0.00018 62_[+1]_50 chrX:14954011-14954131 0.00018 84_[+1]_28 chr3L:20516629-20516749 0.00018 30_[+1]_82 chr3R:23947143-23947263 0.00018 104_[+1]_8 chr2L:482615-482735 0.00018 41_[+1]_71 chr2R:9542454-9542574 0.00018 89_[+1]_23 chr3L:20186576-20186696 0.00019 42_[+1]_70 chr2R:13336744-13336864 0.00019 100_[+1]_12 chr2L:5547387-5547507 0.00023 [+1]_112 chr2L:1094812-1094932 0.00023 53_[+1]_59 chr3L:4025863-4025983 0.00023 78_[+1]_34 chr2L:6479759-6479879 0.00023 51_[+1]_61 chr2R:7805815-7805935 0.00028 13_[+1]_99 chr3L:614911-615031 0.00028 59_[+1]_53 chrX:17820396-17820516 0.00028 72_[+1]_40 chr2R:9143881-9144001 0.00028 50_[+1]_62 chr3R:19153590-19153710 0.00028 24_[+1]_88 chr3R:21163385-21163505 0.00034 82_[+1]_30 chr2R:19414604-19414724 0.00034 110_[+1]_2 chr3L:19907468-19907588 0.00034 37_[+1]_75 chr3R:15243080-15243200 0.00034 104_[+1]_8 chr3R:19467631-19467751 0.0004 71_[+1]_41 chr3L:11358829-11358949 0.00056 [+1]_112 chr2L:10004776-10004896 0.00056 77_[+1]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKTGY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTKTGY width=8 seqs=54 chr3L:12668186-12668306 ( 31) GTGTGTGT 1 chr3R:15243630-15243750 ( 101) GTGTGTGT 1 chr3R:21377126-21377246 ( 86) GTGTGTGT 1 chr2L:14410426-14410546 ( 101) GTGTGTGT 1 chr3L:18020998-18021118 ( 87) GTGTGTGT 1 chr3L:9714726-9714846 ( 58) GTGTGTGT 1 chr2L:11210342-11210462 ( 112) GTGTGTGT 1 chrX:1387305-1387425 ( 6) GTGTGTGT 1 chrX:4702971-4703091 ( 32) GTGTGTGT 1 chr3L:5360809-5360929 ( 47) GTGTGTGT 1 chr3R:4804481-4804601 ( 52) GTGTGTGT 1 chr2R:18134146-18134266 ( 60) GTGTGTGT 1 chr3L:14037819-14037939 ( 68) GTGTGTGT 1 chr3L:19073318-19073438 ( 16) GTGTGTGC 1 chr3L:3901988-3902108 ( 35) GTGTGTGC 1 chr3R:13382490-13382610 ( 82) GTGTGTGC 1 chr3R:13320027-13320147 ( 64) GTGTTTGT 1 chr3L:6140321-6140441 ( 38) GTGTTTGC 1 chr3L:11788301-11788421 ( 44) GTGTTTGC 1 chr3R:31240213-31240333 ( 3) GTGTTTGC 1 chr2R:9565861-9565981 ( 21) GTTTGTGT 1 chr2L:19817253-19817373 ( 93) GTTTGTGT 1 chr3L:21055961-21056081 ( 84) GTTTGTGT 1 chr2R:9439867-9439987 ( 33) CTGTGTGT 1 chr2L:94857-94977 ( 15) GTTTGTGC 1 chr3R:31218684-31218804 ( 84) CTGTGTGC 1 chr3R:11993393-11993513 ( 85) ATGTGTGT 1 chr2L:7528213-7528333 ( 25) ATGTGTGT 1 chr2R:9098462-9098582 ( 89) CTGTTTGT 1 chr3R:29062910-29063030 ( 2) GTTTTTGT 1 chr3L:960722-960842 ( 63) GTTTTTGT 1 chrX:14954011-14954131 ( 85) GTTTTTGT 1 chr3L:20516629-20516749 ( 31) GTTTTTGT 1 chr3R:23947143-23947263 ( 105) CTGTTTGT 1 chr2L:482615-482735 ( 42) CTGTTTGT 1 chr2R:9542454-9542574 ( 90) GTTTTTGT 1 chr3L:20186576-20186696 ( 43) ATGTGTGC 1 chr2R:13336744-13336864 ( 101) ATGTGTGC 1 chr2L:5547387-5547507 ( 1) CTGTTTGC 1 chr2L:1094812-1094932 ( 54) CTGTTTGC 1 chr3L:4025863-4025983 ( 79) GTTTTTGC 1 chr2L:6479759-6479879 ( 52) CTGTTTGC 1 chr2R:7805815-7805935 ( 14) ATGTTTGT 1 chr3L:614911-615031 ( 60) CTTTGTGT 1 chrX:17820396-17820516 ( 73) GTGCGTGT 1 chr2R:9143881-9144001 ( 51) CTTTGTGT 1 chr3R:19153590-19153710 ( 25) ATGTTTGT 1 chr3R:21163385-21163505 ( 83) GTATGTGT 1 chr2R:19414604-19414724 ( 111) ATGTTTGC 1 chr3L:19907468-19907588 ( 38) GTGCGTGC 1 chr3R:15243080-15243200 ( 105) GTATGTGT 1 chr3R:19467631-19467751 ( 72) GTGCTTGT 1 chr3L:11358829-11358949 ( 1) GTGTGTAC 1 chr2L:10004776-10004896 ( 78) GTGTGTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKTGY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6807 E= 1.2e+001 -109 -26 156 -1240 -1240 -1240 -1240 189 -290 -1240 167 -28 -1240 -199 -1240 180 -1240 -1240 144 45 -1240 -1240 -1240 189 -290 -1240 205 -1240 -1240 59 -1240 130 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKTGY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 1.2e+001 0.129630 0.185185 0.685185 0.000000 0.000000 0.000000 0.000000 1.000000 0.037037 0.000000 0.740741 0.222222 0.000000 0.055556 0.000000 0.944444 0.000000 0.000000 0.629630 0.370370 0.000000 0.000000 0.000000 1.000000 0.037037 0.000000 0.962963 0.000000 0.000000 0.333333 0.000000 0.666667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKTGY MEME-1 regular expression -------------------------------------------------------------------------------- GT[GT]T[GT]TG[TC] -------------------------------------------------------------------------------- Time 7.10 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACAHA MEME-2 width = 8 sites = 47 llr = 386 E-value = 3.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACAHA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :91a:a29 pos.-specific C a:6:a:3: probability G :1:::::1 matrix T ::3:::4: bits 2.2 * 2.0 * *** 1.7 * *** 1.5 ** *** Relative 1.3 ** *** * Entropy 1.1 ** *** * (11.9 bits) 0.9 ** *** * 0.7 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACATA consensus T C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAHA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:20083544-20083664 81 3.08e-05 TGGATATTTA CACACATA TGCATGCTAC chr3R:24320497-24320617 11 3.08e-05 TTTGGTTTCT CACACATA CACATGCCCA chr2R:24746037-24746157 100 3.08e-05 caagcaaaca cacacaca cacttacaca chr3L:8748976-8749096 41 3.08e-05 GGAGCAAGCT CACACATA GGTGGCGCAT chr3R:21377126-21377246 17 3.08e-05 ATGGCAAAGG CACACACA AAATAGAATG chr3R:31609044-31609164 75 3.08e-05 CTCTCGCTTA CACACACA AACACCAGAC chr2R:6811728-6811848 103 3.08e-05 cacacgcaca cacacaca gacTGGTTTT chr3L:26012591-26012711 20 3.08e-05 catacgtgtg cacacata cagttgtctg chr3L:12526419-12526539 63 3.08e-05 tgtgtaaata cacacata cacatacgca chr2L:4886732-4886852 26 3.08e-05 GTCGGCGCCC CACACATA GACGCCATTA chr3L:10734637-10734757 22 3.08e-05 tacacactca cacacaca TGAGCGGGCA chr3R:5599641-5599761 91 3.08e-05 CTCTCTTTTT CACACACA CATACCCACT chr3R:31218684-31218804 59 3.08e-05 CCACTGGGCG CACACATA ACCTCAAAGT chr2R:17536301-17536421 55 4.81e-05 ACTAACCATT CACACAAA ACAGTGTTTC chrX:17305686-17305806 94 4.81e-05 AAAGACCATT CACACAAA AGCAATAGTT chr3L:18020998-18021118 101 4.81e-05 GTGTGAGCGA CACACAAA TTGAGTGCAA chr3L:19191976-19192096 94 4.81e-05 CAAATAAATC CACACAAA TGCTGCGACG chr2L:7528213-7528333 95 4.81e-05 AACTTAAAAG CACACAAA CTACACACAC chr2R:7805815-7805935 57 8.59e-05 AACTTATGTA CATACATA TATGTGCAGG chrX:17294292-17294412 5 8.59e-05 aaag catacaca aataaacagc chr2R:9546583-9546703 73 8.59e-05 TAAGAACAGA catacata cgtacatatt chr3L:20186576-20186696 23 8.59e-05 AGTACTGAAG CATACATA CATCGTTTAT chr3L:20516629-20516749 61 8.59e-05 ACATTTTAAC CATACATA CGTTCGATTC chr3L:3901988-3902108 71 8.59e-05 GAAATGCATG CATACACA TTATTTTGTG chr3L:3198459-3198579 113 8.59e-05 ATAACACGCT CATACACA chr2R:18134146-18134266 104 8.59e-05 CCAGGTACAC CATACATA TGTAAAATG chr3R:11762542-11762662 4 8.59e-05 GCA CATACACA CTTATATTCA chr2L:4829201-4829321 44 1.24e-04 TTTACGTGTG CAAACACA ACAGCTCACT chr3L:960722-960842 17 1.24e-04 TCCCAAGCTA CAAACATA AACTTTATGA chr3R:6664520-6664640 36 1.24e-04 ACAAACTAAG CAAAcaca gtcacagtca chr3L:18781581-18781701 56 1.24e-04 GTGAAATGAG CAAACACA AAAGGGGGTT chr3L:20731009-20731129 57 1.46e-04 GTTGTTGGCC CATACAAA CACCCAATAT chr3L:23095143-23095263 107 1.46e-04 ACGGACAGTT CATACAAA ATTACT chr2R:25190586-25190706 62 1.46e-04 TGCACCCCTG CATACAAA ACAAATATGT chr3R:31610756-31610876 2 1.71e-04 A CACACATG CGAATGGGAA chr2R:24187579-24187699 59 1.71e-04 GGCCAGGGCT CACACACG GACCCACACA chr2R:7352561-7352681 21 1.71e-04 GGGAAGCACC CACACATG CACAGCCATG chr2L:14410426-14410546 17 1.71e-04 AATTTATTTC CACACATG TGTGTGCAGC chr3L:1969994-1970114 60 1.71e-04 GAACTTTTTC CACACACG CACACCGAAC chr3R:9944522-9944642 65 1.93e-04 CTCTTAATAG CAAACAAA CAAAAACCTA chr3L:4025863-4025983 60 1.93e-04 TTTATCAGCG CAAACAAA AGCCGTCGAA chr3R:24134728-24134848 12 1.93e-04 GCTAAGAGAG CAAACAAA AACGTAAACA chr3R:15243630-15243750 27 2.19e-04 CTCCCTCGCT CGCACATA CGAATCACCC chrX:2469977-2470097 25 2.19e-04 GCGCAGACTC CGCACACA CGTCTTTCTT chr2R:22319396-22319516 35 2.19e-04 ATAAGCCGGC CGCACATA GGAACCAcca chrX:18082859-18082979 12 3.18e-04 CTTTACAGAA TACACATA TGTATATGAT chr2L:22148504-22148624 47 3.18e-04 TTACCCAAAG TACACATA AATCTTTTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAHA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20083544-20083664 3.1e-05 80_[+2]_32 chr3R:24320497-24320617 3.1e-05 10_[+2]_102 chr2R:24746037-24746157 3.1e-05 99_[+2]_13 chr3L:8748976-8749096 3.1e-05 40_[+2]_72 chr3R:21377126-21377246 3.1e-05 16_[+2]_96 chr3R:31609044-31609164 3.1e-05 74_[+2]_38 chr2R:6811728-6811848 3.1e-05 102_[+2]_10 chr3L:26012591-26012711 3.1e-05 19_[+2]_93 chr3L:12526419-12526539 3.1e-05 62_[+2]_50 chr2L:4886732-4886852 3.1e-05 25_[+2]_87 chr3L:10734637-10734757 3.1e-05 21_[+2]_91 chr3R:5599641-5599761 3.1e-05 90_[+2]_22 chr3R:31218684-31218804 3.1e-05 58_[+2]_54 chr2R:17536301-17536421 4.8e-05 54_[+2]_58 chrX:17305686-17305806 4.8e-05 93_[+2]_19 chr3L:18020998-18021118 4.8e-05 100_[+2]_12 chr3L:19191976-19192096 4.8e-05 93_[+2]_19 chr2L:7528213-7528333 4.8e-05 94_[+2]_18 chr2R:7805815-7805935 8.6e-05 56_[+2]_56 chrX:17294292-17294412 8.6e-05 4_[+2]_108 chr2R:9546583-9546703 8.6e-05 72_[+2]_40 chr3L:20186576-20186696 8.6e-05 22_[+2]_90 chr3L:20516629-20516749 8.6e-05 60_[+2]_52 chr3L:3901988-3902108 8.6e-05 70_[+2]_42 chr3L:3198459-3198579 8.6e-05 112_[+2] chr2R:18134146-18134266 8.6e-05 103_[+2]_9 chr3R:11762542-11762662 8.6e-05 3_[+2]_109 chr2L:4829201-4829321 0.00012 43_[+2]_69 chr3L:960722-960842 0.00012 16_[+2]_96 chr3R:6664520-6664640 0.00012 35_[+2]_77 chr3L:18781581-18781701 0.00012 55_[+2]_57 chr3L:20731009-20731129 0.00015 56_[+2]_56 chr3L:23095143-23095263 0.00015 106_[+2]_6 chr2R:25190586-25190706 0.00015 61_[+2]_51 chr3R:31610756-31610876 0.00017 1_[+2]_111 chr2R:24187579-24187699 0.00017 58_[+2]_54 chr2R:7352561-7352681 0.00017 20_[+2]_92 chr2L:14410426-14410546 0.00017 16_[+2]_96 chr3L:1969994-1970114 0.00017 59_[+2]_53 chr3R:9944522-9944642 0.00019 64_[+2]_48 chr3L:4025863-4025983 0.00019 59_[+2]_53 chr3R:24134728-24134848 0.00019 11_[+2]_101 chr3R:15243630-15243750 0.00022 26_[+2]_86 chrX:2469977-2470097 0.00022 24_[+2]_88 chr2R:22319396-22319516 0.00022 34_[+2]_78 chrX:18082859-18082979 0.00032 11_[+2]_101 chr2L:22148504-22148624 0.00032 46_[+2]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAHA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACAHA width=8 seqs=47 chr2L:20083544-20083664 ( 81) CACACATA 1 chr3R:24320497-24320617 ( 11) CACACATA 1 chr2R:24746037-24746157 ( 100) CACACACA 1 chr3L:8748976-8749096 ( 41) CACACATA 1 chr3R:21377126-21377246 ( 17) CACACACA 1 chr3R:31609044-31609164 ( 75) CACACACA 1 chr2R:6811728-6811848 ( 103) CACACACA 1 chr3L:26012591-26012711 ( 20) CACACATA 1 chr3L:12526419-12526539 ( 63) CACACATA 1 chr2L:4886732-4886852 ( 26) CACACATA 1 chr3L:10734637-10734757 ( 22) CACACACA 1 chr3R:5599641-5599761 ( 91) CACACACA 1 chr3R:31218684-31218804 ( 59) CACACATA 1 chr2R:17536301-17536421 ( 55) CACACAAA 1 chrX:17305686-17305806 ( 94) CACACAAA 1 chr3L:18020998-18021118 ( 101) CACACAAA 1 chr3L:19191976-19192096 ( 94) CACACAAA 1 chr2L:7528213-7528333 ( 95) CACACAAA 1 chr2R:7805815-7805935 ( 57) CATACATA 1 chrX:17294292-17294412 ( 5) CATACACA 1 chr2R:9546583-9546703 ( 73) CATACATA 1 chr3L:20186576-20186696 ( 23) CATACATA 1 chr3L:20516629-20516749 ( 61) CATACATA 1 chr3L:3901988-3902108 ( 71) CATACACA 1 chr3L:3198459-3198579 ( 113) CATACACA 1 chr2R:18134146-18134266 ( 104) CATACATA 1 chr3R:11762542-11762662 ( 4) CATACACA 1 chr2L:4829201-4829321 ( 44) CAAACACA 1 chr3L:960722-960842 ( 17) CAAACATA 1 chr3R:6664520-6664640 ( 36) CAAACACA 1 chr3L:18781581-18781701 ( 56) CAAACACA 1 chr3L:20731009-20731129 ( 57) CATACAAA 1 chr3L:23095143-23095263 ( 107) CATACAAA 1 chr2R:25190586-25190706 ( 62) CATACAAA 1 chr3R:31610756-31610876 ( 2) CACACATG 1 chr2R:24187579-24187699 ( 59) CACACACG 1 chr2R:7352561-7352681 ( 21) CACACATG 1 chr2L:14410426-14410546 ( 17) CACACATG 1 chr3L:1969994-1970114 ( 60) CACACACG 1 chr3R:9944522-9944642 ( 65) CAAACAAA 1 chr3L:4025863-4025983 ( 60) CAAACAAA 1 chr3R:24134728-24134848 ( 12) CAAACAAA 1 chr3R:15243630-15243750 ( 27) CGCACATA 1 chrX:2469977-2470097 ( 25) CGCACACA 1 chr2R:22319396-22319516 ( 35) CGCACATA 1 chrX:18082859-18082979 ( 12) TACACATA 1 chr2L:22148504-22148624 ( 47) TACACATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAHA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8033 E= 3.1e-003 -1220 211 -1220 -267 176 -1220 -186 -1220 -89 143 -1220 -8 186 -1220 -1220 -1220 -1220 218 -1220 -1220 186 -1220 -1220 -1220 -24 62 -1220 65 170 -1220 -113 -1220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAHA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 3.1e-003 0.000000 0.957447 0.000000 0.042553 0.936170 0.000000 0.063830 0.000000 0.148936 0.595745 0.000000 0.255319 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.234043 0.340426 0.000000 0.425532 0.893617 0.000000 0.106383 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACAHA MEME-2 regular expression -------------------------------------------------------------------------------- CA[CT]ACA[TCA]A -------------------------------------------------------------------------------- Time 13.11 secs. ******************************************************************************** ******************************************************************************** MOTIF TATGTACA MEME-3 width = 8 sites = 17 llr = 171 E-value = 6.4e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATGTACA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:::a:a pos.-specific C ::::::7: probability G :::a:::: matrix T a:a:a:3: bits 2.2 * 2.0 ****** * 1.7 ****** * 1.5 ****** * Relative 1.3 ******** Entropy 1.1 ******** (14.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TATGTACA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGTACA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:18082859-18082979 46 2.15e-05 TATACATATG TATGTACA TAGCTATATC chr3L:19191976-19192096 36 2.15e-05 GCACTGCCTT TATGTACA GTAAAAATTC chr3L:20006824-20006944 68 2.15e-05 ACCGATGTGC TATGTACA TATGCATCGC chr4:136175-136295 44 2.15e-05 tttcactttg tatgtaca tatgtatgta chr2L:22148504-22148624 10 2.15e-05 atacatatg tatgtaca taTACCCCAC chr3R:10186195-10186315 49 2.15e-05 GCAATGACAA TATGTACA AGTACACGCT chr2L:20004447-20004567 32 2.15e-05 AGTACATACG TATGTACA TATGTATCTA chr3L:16670327-16670447 4 2.15e-05 AGA TATGTACA TATAGCTGTG chr2L:94857-94977 101 2.15e-05 CTTGTATACA TATGTACA TATATCAATT chr3L:16050095-16050215 64 2.15e-05 CCTAAGTATG TATGTACA TGTGTATCTC chr2L:14024516-14024636 38 2.15e-05 GGCGTGTAAA TATGTACA GAGCATATTG chr3L:6963418-6963538 67 2.15e-05 TAGCTCGACA TATGTACA GTGGGAAATG chr2L:5547387-5547507 47 4.78e-05 AGTTAATACA TATGTATA TTGCATAAAT chr3L:3901988-3902108 46 4.78e-05 TGTGTGCATG TATGTATA CACAGCTGAA chr3R:14013021-14013141 30 4.78e-05 CACGTGCACA TATGTATA CGTAAATATG chr3R:11993393-11993513 100 4.78e-05 tgtatttaca tatgtatA TGCAAATAGT chr2R:25190586-25190706 75 4.78e-05 ACAAAACAAA TATGTATA TTGAAGCCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGTACA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:18082859-18082979 2.1e-05 45_[+3]_67 chr3L:19191976-19192096 2.1e-05 35_[+3]_77 chr3L:20006824-20006944 2.1e-05 67_[+3]_45 chr4:136175-136295 2.1e-05 43_[+3]_69 chr2L:22148504-22148624 2.1e-05 9_[+3]_103 chr3R:10186195-10186315 2.1e-05 48_[+3]_64 chr2L:20004447-20004567 2.1e-05 31_[+3]_81 chr3L:16670327-16670447 2.1e-05 3_[+3]_109 chr2L:94857-94977 2.1e-05 100_[+3]_12 chr3L:16050095-16050215 2.1e-05 63_[+3]_49 chr2L:14024516-14024636 2.1e-05 37_[+3]_75 chr3L:6963418-6963538 2.1e-05 66_[+3]_46 chr2L:5547387-5547507 4.8e-05 46_[+3]_66 chr3L:3901988-3902108 4.8e-05 45_[+3]_67 chr3R:14013021-14013141 4.8e-05 29_[+3]_83 chr3R:11993393-11993513 4.8e-05 99_[+3]_13 chr2R:25190586-25190706 4.8e-05 74_[+3]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGTACA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATGTACA width=8 seqs=17 chrX:18082859-18082979 ( 46) TATGTACA 1 chr3L:19191976-19192096 ( 36) TATGTACA 1 chr3L:20006824-20006944 ( 68) TATGTACA 1 chr4:136175-136295 ( 44) TATGTACA 1 chr2L:22148504-22148624 ( 10) TATGTACA 1 chr3R:10186195-10186315 ( 49) TATGTACA 1 chr2L:20004447-20004567 ( 32) TATGTACA 1 chr3L:16670327-16670447 ( 4) TATGTACA 1 chr2L:94857-94977 ( 101) TATGTACA 1 chr3L:16050095-16050215 ( 64) TATGTACA 1 chr2L:14024516-14024636 ( 38) TATGTACA 1 chr3L:6963418-6963538 ( 67) TATGTACA 1 chr2L:5547387-5547507 ( 47) TATGTATA 1 chr3L:3901988-3902108 ( 46) TATGTATA 1 chr3R:14013021-14013141 ( 30) TATGTATA 1 chr3R:11993393-11993513 ( 100) TATGTATA 1 chr2R:25190586-25190706 ( 75) TATGTATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGTACA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7672 E= 6.4e-001 -1073 -1073 -1073 188 186 -1073 -1073 -1073 -1073 -1073 -1073 188 -1073 -1073 211 -1073 -1073 -1073 -1073 188 186 -1073 -1073 -1073 -1073 167 -1073 12 186 -1073 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGTACA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 6.4e-001 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.705882 0.000000 0.294118 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGTACA MEME-3 regular expression -------------------------------------------------------------------------------- TATGTA[CT]A -------------------------------------------------------------------------------- Time 18.98 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCAACR MEME-4 width = 8 sites = 16 llr = 160 E-value = 1.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCAACR MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::aa:6 pos.-specific C 3::a::a: probability G :aa::::4 matrix T 8::::::: bits 2.2 *** * 2.0 ****** 1.7 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ******** (14.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGGCAACA consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAACR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2653647-2653767 104 1.50e-05 ACAAAGAACT TGGCAACA AGAAGGGGT chr2R:17536301-17536421 38 1.50e-05 AGTGAGTAGT TGGCAACA CTAACCATTC chrX:17305686-17305806 67 1.50e-05 TGCATGGATC TGGCAACA CTCTCCAAAA chr3L:14761913-14762033 82 1.50e-05 AGCGACTGTC TGGCAACA CAGCAATGCC chr2R:8614611-8614731 48 1.50e-05 GTTTTTAGGC TGGCAACA CCCTCCAGCT chr3L:3198459-3198579 69 1.50e-05 GTCGATGGGA TGGCAACA TCTAATCAGA chr2L:6479759-6479879 112 1.50e-05 ACGCGTGGGC TGGCAACA C chr3L:9729943-9730063 38 2.76e-05 GCGGTTGATC TGGCAACG CTCTCTTAAC chr3R:20558219-20558339 62 2.76e-05 TTGTTTGGGT TGGCAACG CCCCGACGTT chr3R:15286123-15286243 107 2.76e-05 TTCTCTGGGT TGGCAACG CCTGTG chr2L:7856508-7856628 97 2.76e-05 GAACATAACG TGGCAACG CCAACGGCGT chr3L:3193531-3193651 7 2.76e-05 AAGAGG TGGCAACG TGCAAATTAA chr2L:10239006-10239126 37 3.98e-05 TTTAAAATAA CGGCAACA GCAGCTAACA chr2L:3108380-3108500 54 3.98e-05 ATACATGTTG CGGCAACA TTCACTGCTT chr3L:7641631-7641751 113 3.98e-05 AAACAGGAAA CGGCAACA chr3R:9944522-9944642 96 5.01e-05 AACGAGCAGC CGGCAACG ACAGAAATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAACR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2653647-2653767 1.5e-05 103_[+4]_9 chr2R:17536301-17536421 1.5e-05 37_[+4]_75 chrX:17305686-17305806 1.5e-05 66_[+4]_46 chr3L:14761913-14762033 1.5e-05 81_[+4]_31 chr2R:8614611-8614731 1.5e-05 47_[+4]_65 chr3L:3198459-3198579 1.5e-05 68_[+4]_44 chr2L:6479759-6479879 1.5e-05 111_[+4]_1 chr3L:9729943-9730063 2.8e-05 37_[+4]_75 chr3R:20558219-20558339 2.8e-05 61_[+4]_51 chr3R:15286123-15286243 2.8e-05 106_[+4]_6 chr2L:7856508-7856628 2.8e-05 96_[+4]_16 chr3L:3193531-3193651 2.8e-05 6_[+4]_106 chr2L:10239006-10239126 4e-05 36_[+4]_76 chr2L:3108380-3108500 4e-05 53_[+4]_59 chr3L:7641631-7641751 4e-05 112_[+4] chr3R:9944522-9944642 5e-05 95_[+4]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAACR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCAACR width=8 seqs=16 chrX:2653647-2653767 ( 104) TGGCAACA 1 chr2R:17536301-17536421 ( 38) TGGCAACA 1 chrX:17305686-17305806 ( 67) TGGCAACA 1 chr3L:14761913-14762033 ( 82) TGGCAACA 1 chr2R:8614611-8614731 ( 48) TGGCAACA 1 chr3L:3198459-3198579 ( 69) TGGCAACA 1 chr2L:6479759-6479879 ( 112) TGGCAACA 1 chr3L:9729943-9730063 ( 38) TGGCAACG 1 chr3R:20558219-20558339 ( 62) TGGCAACG 1 chr3R:15286123-15286243 ( 107) TGGCAACG 1 chr2L:7856508-7856628 ( 97) TGGCAACG 1 chr3L:3193531-3193651 ( 7) TGGCAACG 1 chr2L:10239006-10239126 ( 37) CGGCAACA 1 chr2L:3108380-3108500 ( 54) CGGCAACA 1 chr3L:7641631-7641751 ( 113) CGGCAACA 1 chr3R:9944522-9944642 ( 96) CGGCAACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAACR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.93649 E= 1.2e+002 -1064 18 -1064 147 -1064 -1064 211 -1064 -1064 -1064 211 -1064 -1064 218 -1064 -1064 186 -1064 -1064 -1064 186 -1064 -1064 -1064 -1064 218 -1064 -1064 118 -1064 69 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAACR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.2e+002 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.625000 0.000000 0.375000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCAACR MEME-4 regular expression -------------------------------------------------------------------------------- [TC]GGCAAC[AG] -------------------------------------------------------------------------------- Time 24.83 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTTGTTG MEME-5 width = 8 sites = 12 llr = 122 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTTGTTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 3:::::1: probability G :a::a::a matrix T 8:aa:a9: bits 2.2 * * * 2.0 ***** * 1.7 ***** * 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******** (14.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTTGTTG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTGTTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:4911107-4911227 39 1.83e-05 CCATTGCTGT TGTTGTTG GGCCAGGCCA chr2R:17683052-17683172 48 1.83e-05 GCTTTATACA tgttgttg gttttgttgt chrX:2653647-2653767 43 1.83e-05 AACCCAACAT TGTTGTTG TTTTGTCATG chr3R:9793232-9793352 81 1.83e-05 GTCGCATTAT TGTTGTTG TCGTTTCGTT chr2R:19413312-19413432 45 1.83e-05 GTCAGACAAT TGTTGTTG ACATTATGCA chrX:620165-620285 17 1.83e-05 CGCTGCttat tgttgttg cgttttgtta chr3L:11788301-11788421 29 1.83e-05 AATGCCTATT TGTTGTTG AACAAAGGTG chr3L:19907468-19907588 15 1.83e-05 AAGCACCACT TGTTGTTG ACTTGATTGA chr3R:24320497-24320617 98 3.31e-05 GACAAGCATA CGTTGTTG AAGCTATCGC chr3L:20731009-20731129 46 3.31e-05 ATGACGGTAG CGTTGTTG GCCCATACAA chr2R:15304819-15304939 113 3.31e-05 CCGCTCTGGC CGTTGTTG chr2L:10004776-10004896 2 4.80e-05 c tgttgtCG CTGCCGGCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTGTTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:4911107-4911227 1.8e-05 38_[+5]_74 chr2R:17683052-17683172 1.8e-05 47_[+5]_65 chrX:2653647-2653767 1.8e-05 42_[+5]_70 chr3R:9793232-9793352 1.8e-05 80_[+5]_32 chr2R:19413312-19413432 1.8e-05 44_[+5]_68 chrX:620165-620285 1.8e-05 16_[+5]_96 chr3L:11788301-11788421 1.8e-05 28_[+5]_84 chr3L:19907468-19907588 1.8e-05 14_[+5]_98 chr3R:24320497-24320617 3.3e-05 97_[+5]_15 chr3L:20731009-20731129 3.3e-05 45_[+5]_67 chr2R:15304819-15304939 3.3e-05 112_[+5] chr2L:10004776-10004896 4.8e-05 1_[+5]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTGTTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTTGTTG width=8 seqs=12 chr3R:4911107-4911227 ( 39) TGTTGTTG 1 chr2R:17683052-17683172 ( 48) TGTTGTTG 1 chrX:2653647-2653767 ( 43) TGTTGTTG 1 chr3R:9793232-9793352 ( 81) TGTTGTTG 1 chr2R:19413312-19413432 ( 45) TGTTGTTG 1 chrX:620165-620285 ( 17) TGTTGTTG 1 chr3L:11788301-11788421 ( 29) TGTTGTTG 1 chr3L:19907468-19907588 ( 15) TGTTGTTG 1 chr3R:24320497-24320617 ( 98) CGTTGTTG 1 chr3L:20731009-20731129 ( 46) CGTTGTTG 1 chr2R:15304819-15304939 ( 113) CGTTGTTG 1 chr2L:10004776-10004896 ( 2) TGTTGTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTGTTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 1.5e+004 -1023 18 -1023 147 -1023 -1023 211 -1023 -1023 -1023 -1023 188 -1023 -1023 -1023 188 -1023 -1023 211 -1023 -1023 -1023 -1023 188 -1023 -141 -1023 176 -1023 -1023 211 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTGTTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.5e+004 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.083333 0.000000 0.916667 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTGTTG MEME-5 regular expression -------------------------------------------------------------------------------- [TC]GTTGTTG -------------------------------------------------------------------------------- Time 30.67 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:15243080-15243200 4.38e-01 120 chr2R:24057188-24057308 2.98e-01 120 chrX:1481620-1481740 5.00e-01 120 chr2R:9542454-9542574 6.90e-02 120 chr3L:9509998-9510118 9.84e-01 120 chr3R:31218684-31218804 1.64e-02 58_[+2(3.08e-05)]_54 chr2L:14495578-14495698 6.24e-02 120 chr3L:3193531-3193651 4.01e-02 6_[+4(2.76e-05)]_106 chr2R:13336744-13336864 1.91e-02 120 chr3R:31608137-31608257 2.06e-01 120 chr2R:15304819-15304939 4.63e-02 112_[+5(3.31e-05)] chr3L:11512545-11512665 9.92e-01 120 chr2R:14486970-14487090 6.69e-01 120 chr2R:25190586-25190706 2.95e-04 74_[+3(4.78e-05)]_38 chr3R:19571317-19571437 7.24e-01 120 chr2R:9439867-9439987 4.13e-02 32_[+1(9.46e-05)]_80 chr3L:19992112-19992232 5.20e-03 37_[+3(2.15e-05)]_16_[+3(2.15e-05)]_\ [+3(9.71e-05)]_43 chr2R:5698364-5698484 5.18e-01 120 chrX:521809-521929 5.74e-02 120 chr3L:23099718-23099838 4.96e-01 120 chr3R:6814053-6814173 3.26e-01 120 chr2R:12670150-12670270 7.22e-01 120 chr2L:482615-482735 1.11e-01 120 chr2L:15764183-15764303 4.18e-01 120 chr3L:6963418-6963538 4.75e-02 66_[+3(2.15e-05)]_46 chr3L:21055961-21056081 3.86e-02 83_[+1(9.46e-05)]_29 chr3R:15290134-15290254 2.99e-01 120 chr3R:7087221-7087341 2.61e-01 120 chr3R:5599641-5599761 1.91e-01 27_[+2(3.08e-05)]_55_[+2(3.08e-05)]_\ 22 chr2L:7528213-7528333 7.28e-04 52_[+5(9.44e-05)]_34_[+2(4.81e-05)]_\ 18 chr2L:14024516-14024636 1.49e-02 37_[+3(2.15e-05)]_75 chr3L:16050095-16050215 8.76e-03 63_[+3(2.15e-05)]_49 chr3R:17007483-17007603 5.54e-01 120 chr2R:9577433-9577553 2.20e-01 120 chr2L:6252379-6252499 1.39e-01 49_[+3(9.71e-05)]_63 chr3R:15242880-15243000 2.46e-01 120 chr3L:14037819-14037939 4.57e-02 67_[+1(1.56e-05)]_8_[+1(4.66e-05)]_\ 29 chr3R:31240213-31240333 6.83e-02 2_[+1(6.15e-05)]_110 chr2R:22319396-22319516 2.50e-01 120 chr3L:20004737-20004857 9.08e-01 120 chr3R:11762542-11762662 1.46e-01 3_[+2(8.59e-05)]_109 chr3R:20549088-20549208 9.77e-01 120 chr3L:1969994-1970114 4.22e-01 120 chr3R:11993393-11993513 1.95e-02 99_[+3(4.78e-05)]_13 chr3L:10734637-10734757 4.33e-02 9_[+2(8.59e-05)]_2_[+2(3.08e-05)]_\ 93 chr2L:13813759-13813879 8.98e-01 120 chr2L:14395708-14395828 2.37e-02 120 chr3L:5749754-5749874 2.81e-01 120 chr2L:94857-94977 2.05e-03 100_[+3(2.15e-05)]_12 chr2R:18134146-18134266 4.93e-04 45_[+1(1.56e-05)]_6_[+1(1.56e-05)]_\ 36_[+2(8.59e-05)]_9 chr3R:4450734-4450854 6.81e-01 120 chr3R:14019487-14019607 1.62e-01 120 chr2L:7856508-7856628 4.21e-03 96_[+4(2.76e-05)]_16 chr3L:14671711-14671831 1.13e-01 120 chr3R:27253989-27254109 3.30e-01 120 chr2R:6244981-6245101 1.22e-01 120 chr3R:4804481-4804601 4.61e-04 51_[+1(1.56e-05)]_61 chrX:1460626-1460746 4.20e-01 120 chr3L:16670327-16670447 2.03e-03 3_[+3(2.15e-05)]_109 chr2L:20004447-20004567 3.43e-03 31_[+3(2.15e-05)]_81 chr3L:1331675-1331795 4.99e-01 120 chr3L:3054999-3055119 3.62e-01 120 chr3L:9380695-9380815 2.57e-01 120 chr3L:18755367-18755487 8.47e-01 120 chr3L:876871-876991 8.87e-01 120 chr3R:10186195-10186315 6.58e-03 48_[+3(2.15e-05)]_64 chr3R:20634669-20634789 5.55e-02 120 chr3L:20399176-20399296 1.98e-01 120 chr2R:19469003-19469123 6.83e-01 120 chr2L:19817253-19817373 6.32e-02 92_[+1(9.46e-05)]_20 chr3L:17531580-17531700 4.30e-01 120 chr2L:6479759-6479879 4.06e-03 111_[+4(1.50e-05)]_1 chr3R:13382490-13382610 1.63e-02 81_[+1(2.84e-05)]_31 chr3L:19907468-19907588 1.09e-02 14_[+5(1.83e-05)]_98 chr3L:5360809-5360929 6.98e-02 46_[+1(1.56e-05)]_66 chr2R:13560274-13560394 5.95e-01 120 chr2L:22148504-22148624 2.56e-03 9_[+3(2.15e-05)]_103 chr3L:23095143-23095263 2.95e-02 120 chr3L:11248489-11248609 5.47e-01 120 chr3L:3198459-3198579 5.54e-03 68_[+4(1.50e-05)]_36_[+2(8.59e-05)] chr3R:7779767-7779887 8.64e-01 120 chr3L:15161681-15161801 1.90e-01 85_[+4(7.68e-05)]_27 chr2R:21193450-21193570 9.30e-01 120 chr3R:26137402-26137522 5.28e-01 120 chr3R:14013021-14013141 2.73e-02 29_[+3(4.78e-05)]_83 chr3R:22573760-22573880 2.65e-01 120 chr3L:10886020-10886140 5.30e-01 120 chr3L:3901988-3902108 6.72e-05 34_[+1(2.84e-05)]_3_[+3(4.78e-05)]_\ 17_[+2(8.59e-05)]_42 chrX:4702971-4703091 5.89e-02 27_[+1(1.56e-05)]_[+1(1.56e-05)]_77 chr4:136175-136295 1.70e-02 43_[+3(2.15e-05)]_69 chr2L:4886732-4886852 2.71e-02 25_[+2(3.08e-05)]_87 chr3R:19153590-19153710 2.87e-01 120 chr2R:21057683-21057803 4.36e-01 120 chr2R:24963311-24963431 9.30e-01 120 chr2R:15373035-15373155 2.62e-01 120 chr2R:21648178-21648298 7.98e-03 120 chr3L:11788301-11788421 2.03e-03 28_[+5(1.83e-05)]_7_[+1(6.15e-05)]_\ 69 chr4:989562-989682 3.71e-01 120 chr3L:19073318-19073438 8.26e-03 15_[+1(2.84e-05)]_97 chr3L:6140321-6140441 4.02e-03 37_[+1(6.15e-05)]_75 chr3R:13802322-13802442 9.72e-01 120 chr3L:16985635-16985755 3.01e-01 120 chr3R:22631309-22631429 9.62e-01 120 chrX:620165-620285 5.52e-02 16_[+5(1.83e-05)]_96 chr2L:4187742-4187862 7.71e-03 97_[+4(2.76e-05)]_15 chr3L:18781581-18781701 6.98e-02 120 chrX:19306742-19306862 1.75e-01 120 chr3L:12526419-12526539 7.83e-02 42_[+2(8.59e-05)]_12_[+2(3.08e-05)]_\ 50 chr2R:7474789-7474909 6.27e-01 120 chr3L:14205358-14205478 5.39e-01 120 chr2L:10341792-10341912 2.61e-01 120 chr2R:7451068-7451188 3.06e-01 120 chr3L:18753943-18754063 9.56e-01 120 chrX:18363552-18363672 9.69e-02 120 chr3L:20006824-20006944 1.90e-02 67_[+3(2.15e-05)]_19_[+3(9.71e-05)]_\ 18 chr3L:21036436-21036556 7.89e-01 120 chr3R:12626747-12626867 8.80e-01 120 chr3L:4193865-4193985 2.41e-01 120 chr3R:13320027-13320147 8.56e-02 63_[+1(4.66e-05)]_49 chrX:2469977-2470097 9.63e-02 120 chrX:12749993-12750113 1.17e-01 120 chr3L:26012591-26012711 3.35e-02 19_[+2(3.08e-05)]_93 chr2R:24295265-24295385 9.60e-01 120 chr2R:19414604-19414724 5.12e-01 120 chr3R:19467631-19467751 1.09e-02 120 chrX:1387305-1387425 3.15e-02 3_[+1(1.56e-05)]_109 chr3R:23947143-23947263 1.92e-01 120 chrX:13338236-13338356 6.60e-02 120 chr2R:6811728-6811848 1.18e-01 82_[+2(3.08e-05)]_8_[+2(3.08e-05)]_\ 14 chr3L:11720824-11720944 9.54e-01 120 chr3L:20516629-20516749 5.65e-03 60_[+2(8.59e-05)]_52 chr2L:10004776-10004896 4.79e-03 1_[+5(4.80e-05)]_111 chr2L:11210342-11210462 2.55e-02 111_[+1(1.56e-05)]_1 chr2R:21702668-21702788 3.59e-01 120 chr3L:19191976-19192096 2.73e-03 35_[+3(2.15e-05)]_50_[+2(4.81e-05)]_\ 19 chr3R:8979987-8980107 4.69e-01 120 chrX:12029002-12029122 8.06e-02 120 chrX:15081158-15081278 7.94e-01 120 chr3R:8805546-8805666 4.55e-01 120 chr3R:15286123-15286243 6.41e-02 106_[+4(2.76e-05)]_6 chr2L:1723169-1723289 5.30e-01 120 chr2L:6448267-6448387 3.19e-01 120 chr2R:21659977-21660097 5.36e-01 120 chr2R:8614611-8614731 7.44e-02 47_[+4(1.50e-05)]_65 chrX:14954011-14954131 3.47e-02 120 chr3L:4092850-4092970 7.52e-01 120 chr3L:20000992-20001112 2.90e-02 105_[+3(9.71e-05)]_7 chr3R:24134728-24134848 6.13e-02 68_[+4(7.68e-05)]_44 chr3L:7641631-7641751 1.44e-01 112_[+4(3.98e-05)] chr2R:24779806-24779926 6.22e-01 120 chr3R:21629892-21630012 9.76e-02 120 chr3L:4254714-4254834 3.06e-01 120 chrX:5992311-5992431 4.91e-02 120 chr3R:31609044-31609164 1.38e-01 74_[+2(3.08e-05)]_38 chr2L:3108380-3108500 8.22e-03 53_[+4(3.98e-05)]_59 chr2L:17260705-17260825 3.56e-01 120 chr2R:14217680-14217800 1.51e-01 120 chr3L:11003069-11003189 9.33e-01 120 chr2R:9565861-9565981 1.04e-01 20_[+1(9.46e-05)]_92 chr3L:20186576-20186696 2.86e-02 22_[+2(8.59e-05)]_90 chr3L:9714726-9714846 4.87e-02 32_[+1(2.84e-05)]_17_[+1(1.56e-05)]_\ 14_[+1(1.56e-05)]_33 chr3L:19268932-19269052 7.41e-01 120 chr3R:6664520-6664640 4.23e-01 120 chr3L:11358829-11358949 6.57e-02 120 chr2L:10298452-10298572 4.53e-01 120 chr3L:8741329-8741449 8.14e-01 120 chr2R:9546583-9546703 1.11e-02 72_[+2(8.59e-05)]_40 chr3L:18020998-18021118 6.84e-03 84_[+1(1.56e-05)]_8_[+2(4.81e-05)]_\ 12 chr2L:14410426-14410546 6.60e-03 23_[+1(2.84e-05)]_69_[+1(1.56e-05)]_\ 12 chr3L:8683903-8684023 4.69e-01 120 chr2R:23872191-23872311 5.57e-01 120 chr3L:4025863-4025983 7.81e-03 120 chr3L:7866067-7866187 1.05e-01 120 chr3R:8356683-8356803 8.48e-01 120 chr2L:10239006-10239126 3.82e-02 36_[+4(3.98e-05)]_76 chr3R:16957907-16958027 9.84e-01 120 chr2L:8697894-8698014 5.89e-01 120 chr2R:7352561-7352681 6.56e-02 120 chrX:17077890-17078010 4.91e-01 120 chrX:16275858-16275978 2.12e-01 120 chr4:482752-482872 7.87e-02 120 chr3L:14761913-14762033 1.87e-02 81_[+4(1.50e-05)]_31 chr3L:8968521-8968641 6.67e-01 120 chr2L:8009438-8009558 5.05e-01 120 chr2R:14031621-14031741 3.30e-01 120 chr3L:960722-960842 7.56e-03 120 chr2L:4829201-4829321 8.20e-02 120 chr3L:8986613-8986733 5.80e-01 120 chr3L:3390691-3390811 6.00e-01 120 chr2R:17699206-17699326 2.07e-01 120 chr2R:23988453-23988573 2.36e-01 120 chr2R:9143881-9144001 9.59e-02 120 chrX:18082859-18082979 2.56e-03 17_[+3(4.78e-05)]_20_[+3(2.15e-05)]_\ 67 chrX:17305686-17305806 8.95e-04 66_[+4(1.50e-05)]_19_[+2(4.81e-05)]_\ 19 chr3R:21377126-21377246 3.02e-04 16_[+2(3.08e-05)]_53_[+1(2.84e-05)]_\ [+1(1.56e-05)]_27 chr3R:15243630-15243750 5.50e-04 98_[+1(1.56e-05)]_14 chr3R:11338415-11338535 2.12e-01 120 chr2L:2236904-2237024 4.52e-01 120 chr2R:19413312-19413432 3.07e-02 44_[+5(1.83e-05)]_68 chr2R:24337638-24337758 2.29e-01 120 chrX:17294292-17294412 8.92e-02 4_[+2(8.59e-05)]_108 chr3R:9944522-9944642 1.21e-02 95_[+4(5.01e-05)]_17 chr3L:7837094-7837214 2.66e-01 120 chr3R:21163385-21163505 1.19e-01 120 chrX:17820396-17820516 8.44e-02 120 chr2R:17536301-17536421 2.70e-03 37_[+4(1.50e-05)]_9_[+2(4.81e-05)]_\ 58 chr3L:1665030-1665150 8.98e-01 120 chr3R:20558219-20558339 4.54e-02 61_[+4(2.76e-05)]_51 chr3R:20252714-20252834 9.31e-01 120 chr3R:29503527-29503647 5.10e-01 120 chr4:1146496-1146616 7.42e-01 120 chr2R:7932316-7932436 1.25e-01 120 chr3R:9793232-9793352 8.77e-02 80_[+5(1.83e-05)]_32 chr3L:614911-615031 4.92e-01 120 chr2L:10964593-10964713 2.89e-01 120 chrX:8199122-8199242 6.14e-01 120 chr2L:10238237-10238357 5.06e-02 120 chr3R:29062910-29063030 6.63e-02 120 chr3L:20731009-20731129 1.28e-02 45_[+5(3.31e-05)]_67 chr2R:24187579-24187699 2.90e-01 120 chr3L:10851468-10851588 5.14e-01 120 chr2L:19185964-19186084 5.05e-01 120 chr3R:31610756-31610876 2.77e-01 120 chr2L:1094812-1094932 1.76e-01 120 chr3L:8748976-8749096 8.53e-02 40_[+2(3.08e-05)]_72 chr3R:9157898-9158018 7.10e-02 73_[+3(9.71e-05)]_39 chr3L:9729943-9730063 1.47e-01 37_[+4(2.76e-05)]_75 chr2R:24746037-24746157 2.83e-03 97_[+2(3.08e-05)]_15 chr3L:15141818-15141938 6.06e-01 120 chr2L:740145-740265 5.72e-01 120 chr2R:9098462-9098582 6.14e-02 120 chrX:2653647-2653767 7.34e-04 42_[+5(1.83e-05)]_53_[+4(1.50e-05)]_\ 9 chr2L:18621501-18621621 5.90e-01 120 chr3L:12668186-12668306 1.92e-02 30_[+1(1.56e-05)]_82 chr2R:17683052-17683172 2.14e-02 47_[+5(1.83e-05)]_65 chrX:11823212-11823332 8.55e-02 120 chr3L:4134349-4134469 6.17e-01 120 chr2R:21011907-21012027 1.58e-01 120 chr2R:9820176-9820296 1.41e-01 120 chr2R:7805815-7805935 3.50e-04 50_[+3(2.15e-05)]_62 chr2L:10321718-10321838 4.42e-01 120 chr2L:5547387-5547507 1.33e-03 46_[+3(4.78e-05)]_66 chr3L:17740528-17740648 7.80e-01 120 chr3R:23803781-23803901 4.95e-01 120 chr3L:6217953-6218073 5.47e-01 120 chr2R:6788348-6788468 9.95e-01 120 chr3R:24320497-24320617 4.28e-03 10_[+2(3.08e-05)]_79_[+5(3.31e-05)]_\ 15 chr2L:12093653-12093773 5.00e-01 120 chr2L:20083544-20083664 2.64e-02 80_[+2(3.08e-05)]_32 chr3R:4911107-4911227 1.85e-02 35_[+5(1.83e-05)]_77 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n03.farnam.hpc.yale.internal ********************************************************************************