******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17829.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:16809232-16809352 1.0000 120 chr3R:21210220-21210340 1.0000 120 chr2R:10152614-10152734 1.0000 120 chr3L:20530595-20530715 1.0000 120 chrX:16456753-16456873 1.0000 120 chr3L:10863224-10863344 1.0000 120 chrX:18547846-18547966 1.0000 120 chr2L:9512527-9512647 1.0000 120 chr3R:21871435-21871555 1.0000 120 chr3R:8740269-8740389 1.0000 120 chr3L:19193293-19193413 1.0000 120 chr3L:12799711-12799831 1.0000 120 chr2L:3606720-3606840 1.0000 120 chr3L:14617957-14618077 1.0000 120 chrX:13121129-13121249 1.0000 120 chr2R:25061846-25061966 1.0000 120 chr3L:561915-562035 1.0000 120 chr2R:23037391-23037511 1.0000 120 chrX:9305277-9305397 1.0000 120 chr2R:20602884-20603004 1.0000 120 chr2L:11040926-11041046 1.0000 120 chr3R:8197718-8197838 1.0000 120 chr2L:9581705-9581825 1.0000 120 chr2L:2969609-2969729 1.0000 120 chr3L:13533627-13533747 1.0000 120 chr3R:4895046-4895166 1.0000 120 chrX:4593916-4594036 1.0000 120 chr3L:9016345-9016465 1.0000 120 chr3L:1167042-1167162 1.0000 120 chr3L:14648422-14648542 1.0000 120 chrX:11294477-11294597 1.0000 120 chrX:17336481-17336601 1.0000 120 chrX:18975593-18975713 1.0000 120 chr3L:16667002-16667122 1.0000 120 chrX:5696178-5696298 1.0000 120 chr3R:26236159-26236279 1.0000 120 chr2L:10457612-10457732 1.0000 120 chr3L:2464882-2465002 1.0000 120 chr2R:9868107-9868227 1.0000 120 chr2R:21713263-21713383 1.0000 120 chr3R:30789533-30789653 1.0000 120 chr3R:13720774-13720894 1.0000 120 chrX:13121974-13122094 1.0000 120 chr2L:9586088-9586208 1.0000 120 chr3L:16447887-16448007 1.0000 120 chr3L:14961199-14961319 1.0000 120 chr2R:14432358-14432478 1.0000 120 chrX:635806-635926 1.0000 120 chr3L:6513445-6513565 1.0000 120 chr2L:20822660-20822780 1.0000 120 chr3R:9237851-9237971 1.0000 120 chrX:620195-620315 1.0000 120 chr3L:9041271-9041391 1.0000 120 chr3L:19179535-19179655 1.0000 120 chr3R:10626164-10626284 1.0000 120 chr3L:16744030-16744150 1.0000 120 chr2R:8232314-8232434 1.0000 120 chr2R:11397451-11397571 1.0000 120 chrX:13647806-13647926 1.0000 120 chr3R:9039637-9039757 1.0000 120 chr3R:21420054-21420174 1.0000 120 chr3R:27440694-27440814 1.0000 120 chrX:6165772-6165892 1.0000 120 chr2R:18158184-18158304 1.0000 120 chr3L:15174943-15175063 1.0000 120 chr2L:17567993-17568113 1.0000 120 chr2R:19275610-19275730 1.0000 120 chr3R:16801180-16801300 1.0000 120 chr3R:31706256-31706376 1.0000 120 chr2R:18426366-18426486 1.0000 120 chr3L:10536466-10536586 1.0000 120 chr3L:17060936-17061056 1.0000 120 chr3L:18102180-18102300 1.0000 120 chrX:8445041-8445161 1.0000 120 chr3L:9505493-9505613 1.0000 120 chr3L:15728392-15728512 1.0000 120 chrX:457965-458085 1.0000 120 chr2L:12063183-12063303 1.0000 120 chr2L:9595010-9595130 1.0000 120 chr3L:15670557-15670677 1.0000 120 chr3R:16630702-16630822 1.0000 120 chr3R:21834390-21834510 1.0000 120 chr3L:16015952-16016072 1.0000 120 chrX:3396945-3397065 1.0000 120 chr2R:8759617-8759737 1.0000 120 chr3R:31704669-31704789 1.0000 120 chr2R:16516079-16516199 1.0000 120 chrX:17098585-17098705 1.0000 120 chr2L:15442333-15442453 1.0000 120 chr2L:18919647-18919767 1.0000 120 chrX:1793882-1794002 1.0000 120 chr3R:30004732-30004852 1.0000 120 chr2R:15760405-15760525 1.0000 120 chr2L:9990253-9990373 1.0000 120 chr3L:21047159-21047279 1.0000 120 chr2L:20204741-20204861 1.0000 120 chr3R:27919577-27919697 1.0000 120 chr2L:10568055-10568175 1.0000 120 chr2R:20111345-20111465 1.0000 120 chr3L:19056958-19057078 1.0000 120 chr2R:21364862-21364982 1.0000 120 chr3L:6866432-6866552 1.0000 120 chr3R:10636164-10636284 1.0000 120 chr2L:7616959-7617079 1.0000 120 chr3R:26012935-26013055 1.0000 120 chrX:13796354-13796474 1.0000 120 chrX:9930922-9931042 1.0000 120 chr3L:1083426-1083546 1.0000 120 chr3L:13401099-13401219 1.0000 120 chr2L:10362801-10362921 1.0000 120 chr2L:10986313-10986433 1.0000 120 chrX:18986802-18986922 1.0000 120 chr2L:21573264-21573384 1.0000 120 chrX:5969981-5970101 1.0000 120 chr3L:15321053-15321173 1.0000 120 chr3L:2651936-2652056 1.0000 120 chr3L:8445141-8445261 1.0000 120 chr3L:17113362-17113482 1.0000 120 chr2L:5365931-5366051 1.0000 120 chr2R:17533780-17533900 1.0000 120 chr2L:14441038-14441158 1.0000 120 chr2L:10276568-10276688 1.0000 120 chr3R:10628425-10628545 1.0000 120 chr3R:15664497-15664617 1.0000 120 chr2L:7295103-7295223 1.0000 120 chrX:7552263-7552383 1.0000 120 chr3R:19339318-19339438 1.0000 120 chr3L:15729501-15729621 1.0000 120 chr3L:18227432-18227552 1.0000 120 chr3R:23293508-23293628 1.0000 120 chr3R:10354075-10354195 1.0000 120 chr3R:5483935-5484055 1.0000 120 chr2R:15351266-15351386 1.0000 120 chr3L:10350863-10350983 1.0000 120 chr3L:14611399-14611519 1.0000 120 chr3L:380946-381066 1.0000 120 chr2L:10543532-10543652 1.0000 120 chr2L:5445985-5446105 1.0000 120 chr3L:5994226-5994346 1.0000 120 chr3L:15199345-15199465 1.0000 120 chr3L:22773454-22773574 1.0000 120 chr3R:24753653-24753773 1.0000 120 chr3R:9240132-9240252 1.0000 120 chrX:17636145-17636265 1.0000 120 chr2L:9613346-9613466 1.0000 120 chr2R:14803406-14803526 1.0000 120 chr2L:14235132-14235252 1.0000 120 chr3R:12985872-12985992 1.0000 120 chr3L:12271407-12271527 1.0000 120 chr3L:6885778-6885898 1.0000 120 chr3L:18349485-18349605 1.0000 120 chr2R:19437250-19437370 1.0000 120 chr2R:15247900-15248020 1.0000 120 chr2R:23933642-23933762 1.0000 120 chr2R:20618447-20618567 1.0000 120 chr3R:11617528-11617648 1.0000 120 chr2R:11628115-11628235 1.0000 120 chr3L:9004969-9005089 1.0000 120 chr2L:19817228-19817348 1.0000 120 chr3L:6174002-6174122 1.0000 120 chr3R:10449118-10449238 1.0000 120 chr3L:110088-110208 1.0000 120 chr3R:7920354-7920474 1.0000 120 chr3L:905150-905270 1.0000 120 chr3R:29130963-29131083 1.0000 120 chrX:7166501-7166621 1.0000 120 chr3L:10951255-10951375 1.0000 120 chr3L:6817098-6817218 1.0000 120 chr3R:25074671-25074791 1.0000 120 chr3L:4242516-4242636 1.0000 120 chr2L:7635300-7635420 1.0000 120 chr3R:13901687-13901807 1.0000 120 chr3R:23345229-23345349 1.0000 120 chr3R:8362618-8362738 1.0000 120 chr3L:13411159-13411279 1.0000 120 chr2R:11451861-11451981 1.0000 120 chr3L:9042754-9042874 1.0000 120 chr2R:7955951-7956071 1.0000 120 chr3R:15652738-15652858 1.0000 120 chr3R:8954994-8955114 1.0000 120 chr2R:21160523-21160643 1.0000 120 chr3R:16771680-16771800 1.0000 120 chr2R:21101886-21102006 1.0000 120 chr3L:3978083-3978203 1.0000 120 chr3L:3873191-3873311 1.0000 120 chr3L:8629052-8629172 1.0000 120 chr2L:19884603-19884723 1.0000 120 chr3L:16853600-16853720 1.0000 120 chr3R:24817143-24817263 1.0000 120 chr3L:6981979-6982099 1.0000 120 chr3R:11368861-11368981 1.0000 120 chr3L:16749827-16749947 1.0000 120 chr2L:7293585-7293705 1.0000 120 chr3R:29265279-29265399 1.0000 120 chr3R:26945381-26945501 1.0000 120 chr2L:14490745-14490865 1.0000 120 chr3L:14335986-14336106 1.0000 120 chr3L:12606425-12606545 1.0000 120 chr3R:13713641-13713761 1.0000 120 chrX:12225439-12225559 1.0000 120 chr3R:6368689-6368809 1.0000 120 chr3R:30039607-30039727 1.0000 120 chr3R:29255271-29255391 1.0000 120 chr3L:18297484-18297604 1.0000 120 chr2L:19059000-19059120 1.0000 120 chr2R:12727663-12727783 1.0000 120 chr2L:8071726-8071846 1.0000 120 chr2L:14537557-14537677 1.0000 120 chr3R:23157863-23157983 1.0000 120 chr3R:30263839-30263959 1.0000 120 chr2L:20676007-20676127 1.0000 120 chrX:12029010-12029130 1.0000 120 chr3R:11852091-11852211 1.0000 120 chr2L:14562371-14562491 1.0000 120 chr2R:14981154-14981274 1.0000 120 chr3R:16764149-16764269 1.0000 120 chr3L:18402669-18402789 1.0000 120 chr3L:3875154-3875274 1.0000 120 chr3L:18204062-18204182 1.0000 120 chr3L:5857052-5857172 1.0000 120 chr3L:10847852-10847972 1.0000 120 chr3R:13799782-13799902 1.0000 120 chr3L:11398782-11398902 1.0000 120 chr2L:10428635-10428755 1.0000 120 chr3L:1414153-1414273 1.0000 120 chr3L:21484022-21484142 1.0000 120 chr2R:9681850-9681970 1.0000 120 chr2L:11091291-11091411 1.0000 120 chr2L:4133222-4133342 1.0000 120 chr3L:15967965-15968085 1.0000 120 chr3R:15265483-15265603 1.0000 120 chrX:12221687-12221807 1.0000 120 chr2R:11640940-11641060 1.0000 120 chr3R:29089788-29089908 1.0000 120 chrX:16275911-16276031 1.0000 120 chr2R:19860309-19860429 1.0000 120 chr3R:15837180-15837300 1.0000 120 chr2L:17473254-17473374 1.0000 120 chr2R:11825288-11825408 1.0000 120 chr2L:7532762-7532882 1.0000 120 chr2L:19377518-19377638 1.0000 120 chr2L:5520019-5520139 1.0000 120 chrX:9135122-9135242 1.0000 120 chr3L:22727913-22728033 1.0000 120 chr2R:21017527-21017647 1.0000 120 chr3L:10767321-10767441 1.0000 120 chr3L:8951145-8951265 1.0000 120 chr3R:11372739-11372859 1.0000 120 chr2L:5245721-5245841 1.0000 120 chr2R:20587297-20587417 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG17829/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17829.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.33 C 0.167 G 0.167 T 0.337 Background letter frequencies (from file dataset with add-one prior applied): A 0.33 C 0.167 G 0.167 T 0.336 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GAGAAGCG MEME-1 width = 8 sites = 32 llr = 338 E-value = 4.1e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGAAGCG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :9:a9::: pos.-specific C ::::::9: probability G a:a::8:a matrix T :1::121: bits 2.6 * * 2.3 * * * 2.1 * * ** 1.8 * * ** Relative 1.6 * ** *** Entropy 1.3 * ****** (15.2 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GAGAAGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAAGCG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:9613346-9613466 17 4.67e-06 GTATAGCAAT GAGAAGCG TGAGCGTGAG chr3L:6866432-6866552 72 4.67e-06 TTAAGCATTT GAGAAGCG CCGAGAAGGG chr3R:9039637-9039757 100 4.67e-06 TATACCAAAT GAGAAGCG ATGCACTCTC chr3L:16447887-16448007 75 4.67e-06 TTGGATTGTT GAGAAGCG CAGAGAGAGG chr3R:26236159-26236279 79 4.67e-06 TCCGATTGAT GAGAAGCG CGTAGAAGAG chr3L:16667002-16667122 56 4.67e-06 TGGGAGTTAT GAGAAGCG CAGAGAAGGG chrX:18975593-18975713 77 4.67e-06 TGAATGTTTT GAGAAGCG CAGAGAAAGG chrX:17336481-17336601 81 4.67e-06 TTAGCATTTT GAGAAGCG CATAGAATGG chr3R:4895046-4895166 51 4.67e-06 TAGAATTTTT GAGAAGCG CGTAGAAGGG chr3R:8197718-8197838 61 4.67e-06 TAAACACAGT GAGAAGCG CAAAGAGAGG chrX:13121129-13121249 51 4.67e-06 TTATAACTAT GAGAAGCG CAGAGAAAGG chr3L:14617957-14618077 106 4.67e-06 GCGTCGCGCT GAGAAGCG ATCTCAT chr2L:9512527-9512647 55 4.67e-06 AGGGGCGTGT GAGAAGCG CGGAGAAAGG chrX:18547846-18547966 66 4.67e-06 TGGACGCGTT GAGAAGCG CGTAGAAGGG chr3L:20530595-20530715 59 4.67e-06 TCGTTTGTTT GAGAAGCG CATAGAAGGG chr3R:21210220-21210340 71 4.67e-06 TCACTACAGT GAGAAGCG CGTAGAGCGG chrX:16809232-16809352 61 4.67e-06 TACACTTTTT GAGAAGCG CATAGAACGG chrX:6165772-6165892 62 1.41e-05 TGCCACTAGT GAGAATCG AGGAGAAGGG chrX:13121974-13122094 73 1.41e-05 TAGGGGGTAT GAGAATCG CATAGAAGGG chrX:4593916-4594036 48 1.41e-05 TTACATTTAT GAGAATCG CGGAGAGAGG chr3L:13533627-13533747 55 1.41e-05 TAAACAAATT GAGAATCG CCGAGAAGAC chrX:9305277-9305397 43 1.41e-05 TACTGTTTTT GAGAATCG CCGAGGAAGG chr3L:12799711-12799831 43 1.41e-05 TATAATGTTT GAGAATCG CATAGAAGGG chr3R:16771680-16771800 86 1.88e-05 CCAGATAGTG GTGAAGCG CGGGAGAACT chr3L:13401099-13401219 80 1.88e-05 TGAGCCAACG GTGAAGCG ACTTGGCCCG chr2L:10568055-10568175 36 1.88e-05 TCCTTCATCA GTGAAGCG CCTCTCTACG chrX:3396945-3397065 22 2.36e-05 CTAGAAATTA GAGATGCG CGCGTGAGTC chr2L:20822660-20822780 6 2.36e-05 ATCGA GAGATGCG CTTCTCAAAT chr3L:9041271-9041391 16 2.82e-05 GCTGCCCACG GAGAACCG GTTTTCCAAG chr3L:12606425-12606545 54 3.76e-05 GATTTGTTTT GAGAAGTG AGTAAATAAG chr2L:3606720-3606840 70 3.76e-05 TGAACCGGCC GAGAAGTG CGGAGGAGGG chr3L:19056958-19057078 90 4.68e-05 atataGAGTT GAGAAGCA ATCTAAGTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAAGCG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:9613346-9613466 4.7e-06 16_[+1]_96 chr3L:6866432-6866552 4.7e-06 71_[+1]_41 chr3R:9039637-9039757 4.7e-06 99_[+1]_13 chr3L:16447887-16448007 4.7e-06 74_[+1]_38 chr3R:26236159-26236279 4.7e-06 78_[+1]_34 chr3L:16667002-16667122 4.7e-06 55_[+1]_57 chrX:18975593-18975713 4.7e-06 76_[+1]_36 chrX:17336481-17336601 4.7e-06 80_[+1]_32 chr3R:4895046-4895166 4.7e-06 50_[+1]_62 chr3R:8197718-8197838 4.7e-06 60_[+1]_52 chrX:13121129-13121249 4.7e-06 50_[+1]_62 chr3L:14617957-14618077 4.7e-06 105_[+1]_7 chr2L:9512527-9512647 4.7e-06 54_[+1]_58 chrX:18547846-18547966 4.7e-06 65_[+1]_47 chr3L:20530595-20530715 4.7e-06 58_[+1]_54 chr3R:21210220-21210340 4.7e-06 70_[+1]_42 chrX:16809232-16809352 4.7e-06 60_[+1]_52 chrX:6165772-6165892 1.4e-05 61_[+1]_51 chrX:13121974-13122094 1.4e-05 72_[+1]_40 chrX:4593916-4594036 1.4e-05 47_[+1]_65 chr3L:13533627-13533747 1.4e-05 54_[+1]_58 chrX:9305277-9305397 1.4e-05 42_[+1]_70 chr3L:12799711-12799831 1.4e-05 42_[+1]_70 chr3R:16771680-16771800 1.9e-05 85_[+1]_27 chr3L:13401099-13401219 1.9e-05 79_[+1]_33 chr2L:10568055-10568175 1.9e-05 35_[+1]_77 chrX:3396945-3397065 2.4e-05 21_[+1]_91 chr2L:20822660-20822780 2.4e-05 5_[+1]_107 chr3L:9041271-9041391 2.8e-05 15_[+1]_97 chr3L:12606425-12606545 3.8e-05 53_[+1]_59 chr2L:3606720-3606840 3.8e-05 69_[+1]_43 chr3L:19056958-19057078 4.7e-05 89_[+1]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAAGCG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGAAGCG width=8 seqs=32 chr2L:9613346-9613466 ( 17) GAGAAGCG 1 chr3L:6866432-6866552 ( 72) GAGAAGCG 1 chr3R:9039637-9039757 ( 100) GAGAAGCG 1 chr3L:16447887-16448007 ( 75) GAGAAGCG 1 chr3R:26236159-26236279 ( 79) GAGAAGCG 1 chr3L:16667002-16667122 ( 56) GAGAAGCG 1 chrX:18975593-18975713 ( 77) GAGAAGCG 1 chrX:17336481-17336601 ( 81) GAGAAGCG 1 chr3R:4895046-4895166 ( 51) GAGAAGCG 1 chr3R:8197718-8197838 ( 61) GAGAAGCG 1 chrX:13121129-13121249 ( 51) GAGAAGCG 1 chr3L:14617957-14618077 ( 106) GAGAAGCG 1 chr2L:9512527-9512647 ( 55) GAGAAGCG 1 chrX:18547846-18547966 ( 66) GAGAAGCG 1 chr3L:20530595-20530715 ( 59) GAGAAGCG 1 chr3R:21210220-21210340 ( 71) GAGAAGCG 1 chrX:16809232-16809352 ( 61) GAGAAGCG 1 chrX:6165772-6165892 ( 62) GAGAATCG 1 chrX:13121974-13122094 ( 73) GAGAATCG 1 chrX:4593916-4594036 ( 48) GAGAATCG 1 chr3L:13533627-13533747 ( 55) GAGAATCG 1 chrX:9305277-9305397 ( 43) GAGAATCG 1 chr3L:12799711-12799831 ( 43) GAGAATCG 1 chr3R:16771680-16771800 ( 86) GTGAAGCG 1 chr3L:13401099-13401219 ( 80) GTGAAGCG 1 chr2L:10568055-10568175 ( 36) GTGAAGCG 1 chrX:3396945-3397065 ( 22) GAGATGCG 1 chr2L:20822660-20822780 ( 6) GAGATGCG 1 chr3L:9041271-9041391 ( 16) GAGAACCG 1 chr3L:12606425-12606545 ( 54) GAGAAGTG 1 chr2L:3606720-3606840 ( 70) GAGAAGTG 1 chr3L:19056958-19057078 ( 90) GAGAAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAAGCG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5219 E= 4.1e-024 -1164 -1164 259 -1164 146 -1164 -1164 -184 -1164 -1164 259 -1164 160 -1164 -1164 -1164 150 -1164 -1164 -243 -1164 -241 223 -84 -1164 249 -1164 -243 -340 -1164 254 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAAGCG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 4.1e-024 0.000000 0.000000 1.000000 0.000000 0.906250 0.000000 0.000000 0.093750 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.937500 0.000000 0.000000 0.062500 0.000000 0.031250 0.781250 0.187500 0.000000 0.937500 0.000000 0.062500 0.031250 0.000000 0.968750 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAAGCG MEME-1 regular expression -------------------------------------------------------------------------------- GAGAAGCG -------------------------------------------------------------------------------- Time 8.36 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCTTCTC MEME-2 width = 8 sites = 32 llr = 319 E-value = 4.0e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCTTCTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::11:::: pos.-specific C 829::a:a probability G 28::1::: matrix T :::99:a: bits 2.6 * * 2.3 * * 2.1 * * * 1.8 *** * * Relative 1.6 *** *** Entropy 1.3 *** *** (14.4 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCTTCTC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTTCTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:22773454-22773574 76 4.93e-06 CGCATTCGCA CGCTTCTC AGTCTGTACA chrX:17098585-17098705 57 4.93e-06 CCCTTCTCTG CGCTTCTC AATCTATACA chr3L:17060936-17061056 59 4.93e-06 CCTCTCTCTG CGCTTCTC AAAAAGGCCA chr2L:17567993-17568113 55 4.93e-06 CTTTTCTACG CGCTTCTC AGATTCGCAT chr3L:6513445-6513565 70 4.93e-06 CCTTTCTCCG CGCTTCTC AAATATTTAC chr3L:2464882-2465002 63 4.93e-06 CCTTACTCTG CGCTTCTC AAATTTGTAA chrX:11294477-11294597 53 4.93e-06 CCCTCCTCTG CGCTTCTC ATTCTAGTCA chr3L:9016345-9016465 25 4.93e-06 GGTATATTTG CGCTTCTC ATCGAAGTTA chr2L:11040926-11041046 60 4.93e-06 CCTCTCTTTG CGCTTCTC ATTGAGGTGA chr2R:23037391-23037511 46 4.93e-06 CCTCTCTATG CGCTTCTC AAATAGCTAT chr3L:19193293-19193413 48 4.93e-06 CCCTTCTCTG CGCTTCTC ATAAAAGTAA chr3R:8740269-8740389 61 4.93e-06 CCTCTCTATG CGCTTCTC ATAAACGGCA chr3R:21871435-21871555 47 4.93e-06 CCCTTCTACG CGCTTCTC AATCTATCGA chr3L:10863224-10863344 67 4.93e-06 CCTCCCTACG CGCTTCTC AACATATCAG chrX:16456753-16456873 49 4.93e-06 CCTCTCTCCG CGCTTCTC ATCGATGGTA chr2R:10152614-10152734 55 4.93e-06 CCTTTCTACG CGCTTCTC ACAAGTTCTA chr2L:14490745-14490865 31 7.38e-06 AAGTGTGCAG CGCTGCTC GCCGGAGAGC chrX:13796354-13796474 71 1.72e-05 CATTCAAGGG CCCTTCTC TGCGCTTTTC chr2R:11397451-11397571 30 1.72e-05 CCGCTCTCTC GGCTTCTC ACTCACCGGC chr3L:13533627-13533747 25 1.72e-05 CCATTGGGGT CCCTTCTC TTTGCCGCCA chrX:18986802-18986922 74 3.92e-05 CCTTTCTATG CGATTCTC ATAAATATTA chr3R:13720774-13720894 53 3.92e-05 CCTCTCTCTG CGATTCTC ATAAATTCAA chr3L:561915-562035 48 3.92e-05 TCTCTCTCTG CGATTCTC AGTCGGGTTA chr3R:16764149-16764269 21 4.65e-05 GATACGGTTA GCCTTCTC GCTCGGATCG chr2R:21101886-21102006 88 4.65e-05 GGGTTACATC GCCTTCTC TCCTCTACCA chr3R:13901687-13901807 108 4.65e-05 GAAGACTCGC CGCAGCTC AGCTC chr3R:9240132-9240252 73 4.65e-05 TACTTACTTT GCCTTCTC AATTTGTAAT chr3R:21210220-21210340 89 4.65e-05 CGTAGAGCGG CGCAGCTC TGTTAGCGGG chr2R:19275610-19275730 16 4.77e-05 ACAGTTTTCT CGCCGCTC TCTCGCTCTC chr3R:7920354-7920474 107 5.74e-05 TTGATCAGGT GGCATCTC CATTCT chr2L:20822660-20822780 90 7.72e-05 TCCGCATTTT CTCTTCTC TGTCCGCCGC chr3R:8197718-8197838 34 7.72e-05 AATTTTCAAT TGCTTCTC GTCGTTAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTTCTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:22773454-22773574 4.9e-06 75_[+2]_37 chrX:17098585-17098705 4.9e-06 56_[+2]_56 chr3L:17060936-17061056 4.9e-06 58_[+2]_54 chr2L:17567993-17568113 4.9e-06 54_[+2]_58 chr3L:6513445-6513565 4.9e-06 69_[+2]_43 chr3L:2464882-2465002 4.9e-06 62_[+2]_50 chrX:11294477-11294597 4.9e-06 52_[+2]_60 chr3L:9016345-9016465 4.9e-06 24_[+2]_88 chr2L:11040926-11041046 4.9e-06 59_[+2]_53 chr2R:23037391-23037511 4.9e-06 45_[+2]_67 chr3L:19193293-19193413 4.9e-06 47_[+2]_65 chr3R:8740269-8740389 4.9e-06 60_[+2]_52 chr3R:21871435-21871555 4.9e-06 46_[+2]_66 chr3L:10863224-10863344 4.9e-06 66_[+2]_46 chrX:16456753-16456873 4.9e-06 48_[+2]_64 chr2R:10152614-10152734 4.9e-06 54_[+2]_58 chr2L:14490745-14490865 7.4e-06 30_[+2]_82 chrX:13796354-13796474 1.7e-05 70_[+2]_42 chr2R:11397451-11397571 1.7e-05 29_[+2]_83 chr3L:13533627-13533747 1.7e-05 24_[+2]_88 chrX:18986802-18986922 3.9e-05 73_[+2]_39 chr3R:13720774-13720894 3.9e-05 52_[+2]_60 chr3L:561915-562035 3.9e-05 47_[+2]_65 chr3R:16764149-16764269 4.6e-05 20_[+2]_92 chr2R:21101886-21102006 4.6e-05 87_[+2]_25 chr3R:13901687-13901807 4.6e-05 107_[+2]_5 chr3R:9240132-9240252 4.6e-05 72_[+2]_40 chr3R:21210220-21210340 4.6e-05 88_[+2]_24 chr2R:19275610-19275730 4.8e-05 15_[+2]_97 chr3R:7920354-7920474 5.7e-05 106_[+2]_6 chr2L:20822660-20822780 7.7e-05 89_[+2]_23 chr3R:8197718-8197838 7.7e-05 33_[+2]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTTCTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCTTCTC width=8 seqs=32 chr3L:22773454-22773574 ( 76) CGCTTCTC 1 chrX:17098585-17098705 ( 57) CGCTTCTC 1 chr3L:17060936-17061056 ( 59) CGCTTCTC 1 chr2L:17567993-17568113 ( 55) CGCTTCTC 1 chr3L:6513445-6513565 ( 70) CGCTTCTC 1 chr3L:2464882-2465002 ( 63) CGCTTCTC 1 chrX:11294477-11294597 ( 53) CGCTTCTC 1 chr3L:9016345-9016465 ( 25) CGCTTCTC 1 chr2L:11040926-11041046 ( 60) CGCTTCTC 1 chr2R:23037391-23037511 ( 46) CGCTTCTC 1 chr3L:19193293-19193413 ( 48) CGCTTCTC 1 chr3R:8740269-8740389 ( 61) CGCTTCTC 1 chr3R:21871435-21871555 ( 47) CGCTTCTC 1 chr3L:10863224-10863344 ( 67) CGCTTCTC 1 chrX:16456753-16456873 ( 49) CGCTTCTC 1 chr2R:10152614-10152734 ( 55) CGCTTCTC 1 chr2L:14490745-14490865 ( 31) CGCTGCTC 1 chrX:13796354-13796474 ( 71) CCCTTCTC 1 chr2R:11397451-11397571 ( 30) GGCTTCTC 1 chr3L:13533627-13533747 ( 25) CCCTTCTC 1 chrX:18986802-18986922 ( 74) CGATTCTC 1 chr3R:13720774-13720894 ( 53) CGATTCTC 1 chr3L:561915-562035 ( 48) CGATTCTC 1 chr3R:16764149-16764269 ( 21) GCCTTCTC 1 chr2R:21101886-21102006 ( 88) GCCTTCTC 1 chr3R:13901687-13901807 ( 108) CGCAGCTC 1 chr3R:9240132-9240252 ( 73) GCCTTCTC 1 chr3R:21210220-21210340 ( 89) CGCAGCTC 1 chr2R:19275610-19275730 ( 16) CGCCGCTC 1 chr3R:7920354-7920474 ( 107) GGCATCTC 1 chr2L:20822660-20822780 ( 90) CTCTTCTC 1 chr3R:8197718-8197838 ( 34) TGCTTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTTCTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5219 E= 4.0e-016 -1164 229 -9 -342 -1164 -9 229 -342 -182 244 -1164 -1164 -182 -241 -1164 138 -1164 -1164 -41 138 -1164 259 -1164 -1164 -1164 -1164 -1164 157 -1164 259 -1164 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTTCTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 4.0e-016 0.000000 0.812500 0.156250 0.031250 0.000000 0.156250 0.812500 0.031250 0.093750 0.906250 0.000000 0.000000 0.093750 0.031250 0.000000 0.875000 0.000000 0.000000 0.125000 0.875000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTTCTC MEME-2 regular expression -------------------------------------------------------------------------------- CGCTTCTC -------------------------------------------------------------------------------- Time 14.59 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCCCKC MEME-3 width = 8 sites = 22 llr = 220 E-value = 6.1e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCCKC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::12:: pos.-specific C :8:a57:9 probability G a2a:215: matrix T ::::1:51 bits 2.6 * * 2.3 * ** 2.1 * ** * 1.8 **** * Relative 1.6 **** * Entropy 1.3 **** * * (14.5 bits) 1.0 **** *** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGCCCGC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCCKC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:11372739-11372859 28 6.05e-07 AGTCATCGCA GCGCCCGC AGTAGTCGGC chr2R:25061846-25061966 24 6.05e-07 TTCCACCCTC GCGCCCGC ACTGCTTCTT chr3R:13901687-13901807 8 2.43e-06 CCACAAG GCGCGCGC AAAGAAGACG chr3L:22773454-22773574 51 2.43e-06 GCTGTTAGTG GCGCCCTC CCGCTCTCGC chr3L:561915-562035 1 2.43e-06 . GCGCCCTC TTCTCGTCGC chr2L:9581705-9581825 39 3.03e-06 CTGACTAACT GGGCCCGC TCTGCGCAGC chr2R:20111345-20111465 64 3.64e-06 GTCTGCCGCG GCGCCGGC TGTGTGTGTG chr2R:11825288-11825408 3 4.85e-06 CA GCGCGCTC GATAACAAAT chrX:12029010-12029130 47 6.05e-06 TATGTTATCG GCGCCAGC AACGCTGCGT chr3R:9240132-9240252 101 7.25e-06 TGTAAAATAC GCGCACGC TAGTACAGTT chr3L:14617957-14618077 90 7.25e-06 GCATAGAACA GCGCACGC GTCGCGCTGA chrX:18547846-18547966 81 9.07e-06 GCGCGTAGAA GGGCGCGC TGAGTACTCT chr2L:19817228-19817348 30 1.57e-05 AAGTAATATA GCGCCATC TGTCGGTTTT chr3R:21871435-21871555 67 1.99e-05 TCTATCGAGT GCCCCCGC AAGTTCTGTG chrX:16275911-16276031 28 2.05e-05 CCGATTACCA GGGCCGGC ATAGCGATTG chr2L:14490745-14490865 47 2.66e-05 TCGCCGGAGA GCGCTCTC TCGCGAGTGA chr3R:7920354-7920474 51 3.14e-05 ACACGACTCG GCGCGATC TTCTGCTTTC chr2R:16516079-16516199 50 3.14e-05 TCTCACATCT GCGCGATC GGAGCGATCG chrX:13796354-13796474 17 3.69e-05 TTTAATGGAA GCGCCCTT CTCTGCGATT chr3L:19193293-19193413 35 3.69e-05 AAATTGTTTT GCGCCCTT CTCTGCGCTT chr3L:20530595-20530715 76 4.35e-05 GCATAGAAGG GCGCTGGC AACGCCAGGG chr3R:5483935-5484055 42 5.38e-05 AAAAACTTAG GGGCACTC CTCTGTATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCCKC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:11372739-11372859 6e-07 27_[+3]_85 chr2R:25061846-25061966 6e-07 23_[+3]_89 chr3R:13901687-13901807 2.4e-06 7_[+3]_105 chr3L:22773454-22773574 2.4e-06 50_[+3]_62 chr3L:561915-562035 2.4e-06 [+3]_112 chr2L:9581705-9581825 3e-06 38_[+3]_74 chr2R:20111345-20111465 3.6e-06 63_[+3]_49 chr2R:11825288-11825408 4.9e-06 2_[+3]_110 chrX:12029010-12029130 6e-06 46_[+3]_66 chr3R:9240132-9240252 7.2e-06 100_[+3]_12 chr3L:14617957-14618077 7.2e-06 89_[+3]_23 chrX:18547846-18547966 9.1e-06 80_[+3]_32 chr2L:19817228-19817348 1.6e-05 29_[+3]_83 chr3R:21871435-21871555 2e-05 66_[+3]_46 chrX:16275911-16276031 2.1e-05 27_[+3]_85 chr2L:14490745-14490865 2.7e-05 46_[+3]_66 chr3R:7920354-7920474 3.1e-05 50_[+3]_62 chr2R:16516079-16516199 3.1e-05 49_[+3]_63 chrX:13796354-13796474 3.7e-05 16_[+3]_96 chr3L:19193293-19193413 3.7e-05 34_[+3]_78 chr3L:20530595-20530715 4.4e-05 75_[+3]_37 chr3R:5483935-5484055 5.4e-05 41_[+3]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCCKC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCCKC width=8 seqs=22 chr3R:11372739-11372859 ( 28) GCGCCCGC 1 chr2R:25061846-25061966 ( 24) GCGCCCGC 1 chr3R:13901687-13901807 ( 8) GCGCGCGC 1 chr3L:22773454-22773574 ( 51) GCGCCCTC 1 chr3L:561915-562035 ( 1) GCGCCCTC 1 chr2L:9581705-9581825 ( 39) GGGCCCGC 1 chr2R:20111345-20111465 ( 64) GCGCCGGC 1 chr2R:11825288-11825408 ( 3) GCGCGCTC 1 chrX:12029010-12029130 ( 47) GCGCCAGC 1 chr3R:9240132-9240252 ( 101) GCGCACGC 1 chr3L:14617957-14618077 ( 90) GCGCACGC 1 chrX:18547846-18547966 ( 81) GGGCGCGC 1 chr2L:19817228-19817348 ( 30) GCGCCATC 1 chr3R:21871435-21871555 ( 67) GCCCCCGC 1 chrX:16275911-16276031 ( 28) GGGCCGGC 1 chr2L:14490745-14490865 ( 47) GCGCTCTC 1 chr3R:7920354-7920474 ( 51) GCGCGATC 1 chr2R:16516079-16516199 ( 50) GCGCGATC 1 chrX:13796354-13796474 ( 17) GCGCCCTT 1 chr3L:19193293-19193413 ( 35) GCGCCCTT 1 chr3L:20530595-20530715 ( 76) GCGCTGGC 1 chr3R:5483935-5484055 ( 42) GGGCACTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCCKC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2007 E= 6.1e-005 -1110 -1110 259 -1110 -1110 230 13 -1110 -1110 -187 252 -1110 -1110 259 -1110 -1110 -128 171 45 -189 -86 203 -29 -1110 -1110 -1110 171 43 -1110 245 -1110 -189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCCKC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 6.1e-005 0.000000 0.000000 1.000000 0.000000 0.000000 0.818182 0.181818 0.000000 0.000000 0.045455 0.954545 0.000000 0.000000 1.000000 0.000000 0.000000 0.136364 0.545455 0.227273 0.090909 0.181818 0.681818 0.136364 0.000000 0.000000 0.000000 0.545455 0.454545 0.000000 0.909091 0.000000 0.090909 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCCKC MEME-3 regular expression -------------------------------------------------------------------------------- GCGC[CG]C[GT]C -------------------------------------------------------------------------------- Time 20.78 secs. ******************************************************************************** ******************************************************************************** MOTIF GSCAGCGB MEME-4 width = 8 sites = 32 llr = 285 E-value = 3.2e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSCAGCGB MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::6::3: pos.-specific C :6a::8:3 probability G a4:2a253 matrix T :::3::24 bits 2.6 * * * 2.3 * * * 2.1 * * * 1.8 * * ** Relative 1.6 *** ** Entropy 1.3 *** ** (12.9 bits) 1.0 *** ** 0.8 *** *** 0.5 *** **** 0.3 ******** 0.0 -------- Multilevel GCCAGCGT consensus G T AG sequence TC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCAGCGB MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:9581705-9581825 68 1.20e-06 CAGTTAAGTT GCCAGCGG TCGAATCGCA chr2R:8232314-8232434 112 2.39e-06 TGGCGACGCG ggcagcgg c chrX:9930922-9931042 24 4.19e-06 GAAACTGTTC GCCGGCGG AGGTGATCCA chr2R:14981154-14981274 7 7.79e-06 AACAAT GCCAGCGT TGTAATGAAA chr3L:905150-905270 82 7.79e-06 ATATATTATA GCCAGCGT GCAACATAGC chr2R:20111345-20111465 98 7.79e-06 CTGCCAGCTC GGCAGCGC CGTCGTCGGT chr2R:19275610-19275730 63 7.79e-06 ATCCCGCTCT GGCAGCGC TCGGGAAATT chr2R:21101886-21102006 56 1.14e-05 TTGTTGTTTT GGCAGCGT GCGGTTCGGT chr2R:14432358-14432478 27 1.26e-05 CAAAATTTGT GCCTGCGG GCTGCCACAT chr2R:23933642-23933762 102 1.44e-05 AACTGCGATA GCCGGCGT TATCGATAAC chr2R:20602884-20603004 52 2.18e-05 TTTTTTCTCT GCCTGCGT CTTCTTCTCC chr2R:11628115-11628235 108 2.78e-05 GAAAACCGCC GCCAGGGG CGCTG chr2R:19437250-19437370 14 2.78e-05 CTGATAATAA GCCAGCAG GGCTGTTCCC chr3L:10863224-10863344 34 2.78e-05 GCCACCTGCT GGCTGCGT CTCGTGAGCA chr3R:11372739-11372859 6 3.37e-05 GTGGC GGCAGCAG TCGCAGTCAT chr3L:1083426-1083546 1 3.37e-05 . GCCAGCTG TTTAGAATCT chr3L:17113362-17113482 80 3.73e-05 CAGCTTTTTT GCCAGCAC ATTAAATTAA chr2L:3606720-3606840 42 5.46e-05 TGCAACTGCT GGCAGGGC GACCCGTTTT chr2R:10152614-10152734 77 5.46e-05 GTTCTAGCTC GCCAGCTC GTAAACAAGT chrX:12029010-12029130 95 5.76e-05 TAGCTACCAG GGCGGCAG GAATTGGGCA chr2L:11091291-11091411 92 7.38e-05 TTGAAAAATA GCCAGCTT AACGAGGTCC chr3L:21484022-21484142 52 7.38e-05 TATTTAGAAT GGCAGCTC CCGAGATGTG chr3R:11617528-11617648 89 7.38e-05 TTAGCCGTTG GCCAGCTT TTGTTAGACC chr3L:15729501-15729621 105 7.87e-05 AGAGGTCTTG GGCGGCTG GAAAATAC chr2L:19817228-19817348 63 1.07e-04 TCCACCTAAA GGCGGGGT TTTAAGTAAA chr3L:17060936-17061056 81 1.07e-04 AGGCCAAGTG GGCGGCAT GCCTAACTCA chr2L:11040926-11041046 84 1.07e-04 GTGAGCTGGT GCCTGGGC CATGTCTTCG chr2L:7293585-7293705 101 1.25e-04 CTTTTTATTC GCCTGCAT TGATCTCAAT chr3L:9042754-9042874 66 1.25e-04 CTTAGAATAT GGCTGGGC ATCATAGAAA chr3R:30789533-30789653 84 1.25e-04 CAATTCAGAC GCCTGCAT ACGTTTTCTT chrX:16456753-16456873 7 1.42e-04 CTTTTC GGCTGCAT CGCTTACAAC chr2R:23037391-23037511 68 1.52e-04 AGCTATTGTG GCCAGGTG AGCGCATTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCAGCGB MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:9581705-9581825 1.2e-06 67_[+4]_45 chr2R:8232314-8232434 2.4e-06 111_[+4]_1 chrX:9930922-9931042 4.2e-06 23_[+4]_89 chr2R:14981154-14981274 7.8e-06 6_[+4]_106 chr3L:905150-905270 7.8e-06 81_[+4]_31 chr2R:20111345-20111465 7.8e-06 97_[+4]_15 chr2R:19275610-19275730 7.8e-06 62_[+4]_50 chr2R:21101886-21102006 1.1e-05 55_[+4]_57 chr2R:14432358-14432478 1.3e-05 26_[+4]_86 chr2R:23933642-23933762 1.4e-05 101_[+4]_11 chr2R:20602884-20603004 2.2e-05 51_[+4]_61 chr2R:11628115-11628235 2.8e-05 107_[+4]_5 chr2R:19437250-19437370 2.8e-05 13_[+4]_99 chr3L:10863224-10863344 2.8e-05 33_[+4]_79 chr3R:11372739-11372859 3.4e-05 5_[+4]_107 chr3L:1083426-1083546 3.4e-05 [+4]_112 chr3L:17113362-17113482 3.7e-05 79_[+4]_33 chr2L:3606720-3606840 5.5e-05 41_[+4]_71 chr2R:10152614-10152734 5.5e-05 76_[+4]_36 chrX:12029010-12029130 5.8e-05 94_[+4]_18 chr2L:11091291-11091411 7.4e-05 91_[+4]_21 chr3L:21484022-21484142 7.4e-05 51_[+4]_61 chr3R:11617528-11617648 7.4e-05 88_[+4]_24 chr3L:15729501-15729621 7.9e-05 104_[+4]_8 chr2L:19817228-19817348 0.00011 62_[+4]_50 chr3L:17060936-17061056 0.00011 80_[+4]_32 chr2L:11040926-11041046 0.00011 83_[+4]_29 chr2L:7293585-7293705 0.00013 100_[+4]_12 chr3L:9042754-9042874 0.00013 65_[+4]_47 chr3R:30789533-30789653 0.00013 83_[+4]_29 chrX:16456753-16456873 0.00014 6_[+4]_106 chr2R:23037391-23037511 0.00015 67_[+4]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCAGCGB MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSCAGCGB width=8 seqs=32 chr2L:9581705-9581825 ( 68) GCCAGCGG 1 chr2R:8232314-8232434 ( 112) GGCAGCGG 1 chrX:9930922-9931042 ( 24) GCCGGCGG 1 chr2R:14981154-14981274 ( 7) GCCAGCGT 1 chr3L:905150-905270 ( 82) GCCAGCGT 1 chr2R:20111345-20111465 ( 98) GGCAGCGC 1 chr2R:19275610-19275730 ( 63) GGCAGCGC 1 chr2R:21101886-21102006 ( 56) GGCAGCGT 1 chr2R:14432358-14432478 ( 27) GCCTGCGG 1 chr2R:23933642-23933762 ( 102) GCCGGCGT 1 chr2R:20602884-20603004 ( 52) GCCTGCGT 1 chr2R:11628115-11628235 ( 108) GCCAGGGG 1 chr2R:19437250-19437370 ( 14) GCCAGCAG 1 chr3L:10863224-10863344 ( 34) GGCTGCGT 1 chr3R:11372739-11372859 ( 6) GGCAGCAG 1 chr3L:1083426-1083546 ( 1) GCCAGCTG 1 chr3L:17113362-17113482 ( 80) GCCAGCAC 1 chr2L:3606720-3606840 ( 42) GGCAGGGC 1 chr2R:10152614-10152734 ( 77) GCCAGCTC 1 chrX:12029010-12029130 ( 95) GGCGGCAG 1 chr2L:11091291-11091411 ( 92) GCCAGCTT 1 chr3L:21484022-21484142 ( 52) GGCAGCTC 1 chr3R:11617528-11617648 ( 89) GCCAGCTT 1 chr3L:15729501-15729621 ( 105) GGCGGCTG 1 chr2L:19817228-19817348 ( 63) GGCGGGGT 1 chr3L:17060936-17061056 ( 81) GGCGGCAT 1 chr2L:11040926-11041046 ( 84) GCCTGGGC 1 chr2L:7293585-7293705 ( 101) GCCTGCAT 1 chr3L:9042754-9042874 ( 66) GGCTGGGC 1 chr3R:30789533-30789653 ( 84) GCCTGCAT 1 chrX:16456753-16456873 ( 7) GGCTGCAT 1 chr2R:23037391-23037511 ( 68) GCCAGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCAGCGB MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 3.2e-001 -1164 -1164 259 -1164 -1164 176 139 -1164 -1164 259 -1164 -1164 77 -1164 17 -43 -1164 -1164 259 -1164 -1164 229 17 -1164 -40 -1164 167 -62 -1164 59 105 27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCAGCGB MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 3.2e-001 0.000000 0.000000 1.000000 0.000000 0.000000 0.562500 0.437500 0.000000 0.000000 1.000000 0.000000 0.000000 0.562500 0.000000 0.187500 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.812500 0.187500 0.000000 0.250000 0.000000 0.531250 0.218750 0.000000 0.250000 0.343750 0.406250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCAGCGB MEME-4 regular expression -------------------------------------------------------------------------------- G[CG]C[AT]GC[GAT][TGC] -------------------------------------------------------------------------------- Time 27.26 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCTCTC MEME-5 width = 8 sites = 13 llr = 141 E-value = 5.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCTCTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :1:::::: pos.-specific C 8:8a:92a probability G :91::::: matrix T 2:1:a18: bits 2.6 * * 2.3 * * 2.1 * * * * 1.8 **** * * Relative 1.6 ****** * Entropy 1.3 ****** * (15.6 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCCTCTC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTCTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17060936-17061056 47 2.45e-06 CTCCCCTTTG CGCCTCTC TCTGCGCTTC chr3L:9016345-9016465 62 2.45e-06 TTCTGTTTAC CGCCTCTC TTGGTGAGTG chr2L:11040926-11041046 48 2.45e-06 GTGTAAGACG CGCCTCTC TTTGCGCTTC chr2R:23037391-23037511 34 2.45e-06 TTGGTGTCGC CGCCTCTC TATGCGCTTC chr3R:8740269-8740389 49 2.45e-06 TGGGTCGGTA CGCCTCTC TATGCGCTTC chrX:16456753-16456873 37 2.45e-06 GTTCATAGTG CGCCTCTC TCCGCGCTTC chr3L:10863224-10863344 55 3.67e-06 GTGAGCAAAG CGCCTCCC TACGCGCTTC chr2R:11397451-11397571 44 1.10e-05 TCTCACTCAC CGGCTCTC ACCACTGCAC chr3L:14648422-14648542 44 1.10e-05 CGTAAATTGC TGCCTCTC TCGGCACTTC chr3L:561915-562035 36 1.60e-05 AACACTCTTG CGTCTCTC TCTGCGATTC chr3R:13720774-13720894 41 2.57e-05 GCAAAAACAT CACCTCTC TCTGCGATTC chr2R:10152614-10152734 43 2.57e-05 CAAAATTTAG CGCCTTTC TACGCGCTTC chr3R:13901687-13901807 47 2.94e-05 CCGAGCACAG TGCCTCCC GCTCTGGCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTCTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17060936-17061056 2.4e-06 46_[+5]_66 chr3L:9016345-9016465 2.4e-06 61_[+5]_51 chr2L:11040926-11041046 2.4e-06 47_[+5]_65 chr2R:23037391-23037511 2.4e-06 33_[+5]_79 chr3R:8740269-8740389 2.4e-06 48_[+5]_64 chrX:16456753-16456873 2.4e-06 36_[+5]_76 chr3L:10863224-10863344 3.7e-06 54_[+5]_58 chr2R:11397451-11397571 1.1e-05 43_[+5]_69 chr3L:14648422-14648542 1.1e-05 43_[+5]_69 chr3L:561915-562035 1.6e-05 35_[+5]_77 chr3R:13720774-13720894 2.6e-05 40_[+5]_72 chr2R:10152614-10152734 2.6e-05 42_[+5]_70 chr3R:13901687-13901807 2.9e-05 46_[+5]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTCTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCTCTC width=8 seqs=13 chr3L:17060936-17061056 ( 47) CGCCTCTC 1 chr3L:9016345-9016465 ( 62) CGCCTCTC 1 chr2L:11040926-11041046 ( 48) CGCCTCTC 1 chr2R:23037391-23037511 ( 34) CGCCTCTC 1 chr3R:8740269-8740389 ( 49) CGCCTCTC 1 chrX:16456753-16456873 ( 37) CGCCTCTC 1 chr3L:10863224-10863344 ( 55) CGCCTCCC 1 chr2R:11397451-11397571 ( 44) CGGCTCTC 1 chr3L:14648422-14648542 ( 44) TGCCTCTC 1 chr3L:561915-562035 ( 36) CGTCTCTC 1 chr3R:13720774-13720894 ( 41) CACCTCTC 1 chr2R:10152614-10152734 ( 43) CGCCTTTC 1 chr3R:13901687-13901807 ( 47) TGCCTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTCTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2496 E= 5.0e+000 -1035 234 -1035 -113 -210 -1035 247 -1035 -1035 234 -111 -213 -1035 259 -1035 -1035 -1035 -1035 -1035 157 -1035 247 -1035 -213 -1035 -11 -1035 133 -1035 259 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTCTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 5.0e+000 0.000000 0.846154 0.000000 0.153846 0.076923 0.000000 0.923077 0.000000 0.000000 0.846154 0.076923 0.076923 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.923077 0.000000 0.076923 0.000000 0.153846 0.000000 0.846154 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCTCTC MEME-5 regular expression -------------------------------------------------------------------------------- CGCCTCTC -------------------------------------------------------------------------------- Time 33.32 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16809232-16809352 8.46e-02 60_[+1(4.67e-06)]_52 chr3R:21210220-21210340 1.62e-05 70_[+1(4.67e-06)]_10_[+2(4.65e-05)]_\ 24 chr2R:10152614-10152734 5.98e-06 42_[+5(2.57e-05)]_4_[+2(4.93e-06)]_\ 14_[+4(5.46e-05)]_36 chr3L:20530595-20530715 1.95e-04 58_[+1(4.67e-06)]_9_[+3(4.35e-05)]_\ 37 chrX:16456753-16456873 1.24e-06 36_[+5(2.45e-06)]_4_[+2(4.93e-06)]_\ 64 chr3L:10863224-10863344 3.90e-07 33_[+4(2.78e-05)]_13_[+5(3.67e-06)]_\ 4_[+2(4.93e-06)]_46 chrX:18547846-18547966 1.04e-04 65_[+1(4.67e-06)]_7_[+3(9.07e-06)]_\ 32 chr2L:9512527-9512647 1.08e-02 54_[+1(4.67e-06)]_58 chr3R:21871435-21871555 5.84e-05 46_[+2(4.93e-06)]_12_[+3(1.99e-05)]_\ 46 chr3R:8740269-8740389 1.16e-05 48_[+5(2.45e-06)]_4_[+2(4.93e-06)]_\ 52 chr3L:19193293-19193413 3.89e-05 37_[+2(1.72e-05)]_2_[+2(4.93e-06)]_\ 39_[+2(3.92e-05)]_18 chr3L:12799711-12799831 9.26e-02 42_[+1(1.41e-05)]_70 chr2L:3606720-3606840 3.43e-04 41_[+4(5.46e-05)]_20_[+1(3.76e-05)]_\ 43 chr3L:14617957-14618077 1.17e-04 72_[+1(4.67e-06)]_9_[+3(7.25e-06)]_\ 8_[+1(4.67e-06)]_7 chrX:13121129-13121249 9.30e-04 50_[+1(4.67e-06)]_62 chr2R:25061846-25061966 5.88e-05 23_[+3(6.05e-07)]_89 chr3L:561915-562035 1.89e-06 [+3(2.43e-06)]_27_[+5(1.60e-05)]_4_\ [+2(3.92e-05)]_65 chr2R:23037391-23037511 5.47e-07 33_[+5(2.45e-06)]_4_[+2(4.93e-06)]_\ 67 chrX:9305277-9305397 8.17e-05 42_[+1(1.41e-05)]_70 chr2R:20602884-20603004 5.68e-03 51_[+4(2.18e-05)]_61 chr2L:11040926-11041046 1.70e-06 47_[+5(2.45e-06)]_4_[+2(4.93e-06)]_\ 53 chr3R:8197718-8197838 2.30e-04 33_[+2(7.72e-05)]_19_[+1(4.67e-06)]_\ 52 chr2L:9581705-9581825 4.64e-06 38_[+3(3.03e-06)]_21_[+4(1.20e-06)]_\ 45 chr2L:2969609-2969729 4.85e-02 120 chr3L:13533627-13533747 3.08e-05 24_[+2(1.72e-05)]_22_[+1(1.41e-05)]_\ 58 chr3R:4895046-4895166 2.08e-02 50_[+1(4.67e-06)]_62 chrX:4593916-4594036 4.11e-04 47_[+1(1.41e-05)]_65 chr3L:9016345-9016465 5.65e-05 24_[+2(4.93e-06)]_29_[+5(2.45e-06)]_\ 51 chr3L:1167042-1167162 9.32e-01 120 chr3L:14648422-14648542 1.46e-03 43_[+5(1.10e-05)]_69 chrX:11294477-11294597 6.09e-03 52_[+2(4.93e-06)]_60 chrX:17336481-17336601 9.72e-03 80_[+1(4.67e-06)]_32 chrX:18975593-18975713 1.65e-02 76_[+1(4.67e-06)]_36 chr3L:16667002-16667122 2.54e-02 55_[+1(4.67e-06)]_57 chrX:5696178-5696298 1.60e-01 120 chr3R:26236159-26236279 1.10e-03 57_[+3(9.36e-05)]_13_[+1(4.67e-06)]_\ 34 chr2L:10457612-10457732 3.69e-01 120 chr3L:2464882-2465002 6.14e-03 62_[+2(4.93e-06)]_50 chr2R:9868107-9868227 2.75e-02 120 chr2R:21713263-21713383 1.27e-02 120 chr3R:30789533-30789653 6.00e-02 120 chr3R:13720774-13720894 1.57e-03 40_[+5(2.57e-05)]_4_[+2(3.92e-05)]_\ 60 chrX:13121974-13122094 2.62e-03 72_[+1(1.41e-05)]_40 chr2L:9586088-9586208 9.93e-01 120 chr3L:16447887-16448007 1.18e-03 74_[+1(4.67e-06)]_38 chr3L:14961199-14961319 1.00e+00 120 chr2R:14432358-14432478 9.60e-03 26_[+4(1.26e-05)]_86 chrX:635806-635926 7.07e-01 120 chr3L:6513445-6513565 3.81e-03 69_[+2(4.93e-06)]_43 chr2L:20822660-20822780 1.11e-05 11_[+2(4.93e-06)]_70_[+2(7.72e-05)]_\ 23 chr3R:9237851-9237971 6.74e-01 120 chrX:620195-620315 3.21e-01 120 chr3L:9041271-9041391 6.65e-04 15_[+1(2.82e-05)]_97 chr3L:19179535-19179655 8.78e-01 120 chr3R:10626164-10626284 8.78e-01 120 chr3L:16744030-16744150 7.95e-01 120 chr2R:8232314-8232434 4.05e-04 111_[+4(2.39e-06)]_1 chr2R:11397451-11397571 9.73e-05 29_[+2(1.72e-05)]_6_[+5(1.10e-05)]_\ 69 chrX:13647806-13647926 2.15e-01 120 chr3R:9039637-9039757 2.27e-03 99_[+1(4.67e-06)]_13 chr3R:21420054-21420174 1.21e-01 120 chr3R:27440694-27440814 7.19e-01 120 chrX:6165772-6165892 7.60e-03 61_[+1(1.41e-05)]_51 chr2R:18158184-18158304 2.24e-01 120 chr3L:15174943-15175063 9.23e-01 120 chr2L:17567993-17568113 8.47e-04 54_[+2(4.93e-06)]_58 chr2R:19275610-19275730 9.34e-06 15_[+2(4.77e-05)]_39_[+4(7.79e-06)]_\ 50 chr3R:16801180-16801300 9.56e-01 120 chr3R:31706256-31706376 1.85e-01 120 chr2R:18426366-18426486 1.57e-01 120 chr3L:10536466-10536586 9.64e-01 120 chr3L:17060936-17061056 4.37e-07 46_[+5(2.45e-06)]_4_[+2(4.93e-06)]_\ 54 chr3L:18102180-18102300 5.07e-01 120 chrX:8445041-8445161 9.98e-01 120 chr3L:9505493-9505613 9.60e-01 120 chr3L:15728392-15728512 1.28e-01 120 chrX:457965-458085 9.05e-01 120 chr2L:12063183-12063303 3.14e-01 120 chr2L:9595010-9595130 9.94e-01 120 chr3L:15670557-15670677 6.57e-01 120 chr3R:16630702-16630822 8.71e-02 120 chr3R:21834390-21834510 9.02e-01 120 chr3L:16015952-16016072 2.46e-01 120 chrX:3396945-3397065 9.16e-04 21_[+1(2.36e-05)]_91 chr2R:8759617-8759737 9.53e-01 120 chr3R:31704669-31704789 5.73e-01 120 chr2R:16516079-16516199 7.61e-03 26_[+3(5.38e-05)]_15_[+3(3.14e-05)]_\ 63 chrX:17098585-17098705 2.48e-03 46_[+2(1.72e-05)]_2_[+2(4.93e-06)]_\ 56 chr2L:15442333-15442453 2.38e-01 120 chr2L:18919647-18919767 1.00e+00 120 chrX:1793882-1794002 1.81e-02 120 chr3R:30004732-30004852 8.33e-01 120 chr2R:15760405-15760525 7.06e-01 120 chr2L:9990253-9990373 7.62e-01 120 chr3L:21047159-21047279 5.86e-01 120 chr2L:20204741-20204861 9.97e-01 120 chr3R:27919577-27919697 2.86e-01 120 chr2L:10568055-10568175 1.79e-06 41_[+5(2.45e-06)]_71 chr2R:20111345-20111465 5.82e-06 63_[+3(3.64e-06)]_18_[+4(5.46e-05)]_\ [+4(7.79e-06)]_15 chr3L:19056958-19057078 2.98e-01 89_[+1(4.68e-05)]_23 chr2R:21364862-21364982 8.81e-02 42_[+1(9.45e-05)]_70 chr3L:6866432-6866552 4.43e-03 71_[+1(4.67e-06)]_41 chr3R:10636164-10636284 2.91e-01 120 chr2L:7616959-7617079 7.58e-01 120 chr3R:26012935-26013055 9.99e-01 120 chrX:13796354-13796474 8.69e-05 19_[+2(1.72e-05)]_2_[+2(3.92e-05)]_\ 33_[+2(1.72e-05)]_42 chrX:9930922-9931042 3.74e-03 23_[+4(4.19e-06)]_89 chr3L:1083426-1083546 7.81e-02 [+4(3.37e-05)]_112 chr3L:13401099-13401219 3.30e-03 79_[+1(1.88e-05)]_33 chr2L:10362801-10362921 9.75e-01 120 chr2L:10986313-10986433 9.79e-01 120 chrX:18986802-18986922 6.82e-02 73_[+2(3.92e-05)]_39 chr2L:21573264-21573384 7.23e-01 120 chrX:5969981-5970101 9.37e-01 120 chr3L:15321053-15321173 9.89e-01 120 chr3L:2651936-2652056 1.00e+00 120 chr3L:8445141-8445261 6.19e-01 120 chr3L:17113362-17113482 7.72e-03 79_[+4(3.73e-05)]_33 chr2L:5365931-5366051 7.60e-01 120 chr2R:17533780-17533900 5.16e-01 120 chr2L:14441038-14441158 5.81e-01 120 chr2L:10276568-10276688 1.00e+00 120 chr3R:10628425-10628545 9.97e-01 120 chr3R:15664497-15664617 1.86e-01 120 chr2L:7295103-7295223 7.79e-01 120 chrX:7552263-7552383 9.81e-01 120 chr3R:19339318-19339438 2.78e-01 120 chr3L:15729501-15729621 5.09e-02 104_[+4(7.87e-05)]_8 chr3L:18227432-18227552 8.45e-01 120 chr3R:23293508-23293628 8.31e-01 120 chr3R:10354075-10354195 9.87e-01 120 chr3R:5483935-5484055 1.49e-01 41_[+3(5.38e-05)]_71 chr2R:15351266-15351386 9.88e-01 120 chr3L:10350863-10350983 5.50e-01 120 chr3L:14611399-14611519 9.84e-01 120 chr3L:380946-381066 9.99e-01 120 chr2L:10543532-10543652 8.05e-01 120 chr2L:5445985-5446105 5.42e-01 120 chr3L:5994226-5994346 9.97e-01 120 chr3L:15199345-15199465 5.86e-01 120 chr3L:22773454-22773574 5.19e-06 50_[+3(2.43e-06)]_17_[+2(4.93e-06)]_\ 37 chr3R:24753653-24753773 9.85e-01 120 chr3R:9240132-9240252 3.76e-04 72_[+2(4.65e-05)]_20_[+3(7.25e-06)]_\ 12 chrX:17636145-17636265 9.05e-01 120 chr2L:9613346-9613466 7.46e-03 16_[+1(4.67e-06)]_96 chr2R:14803406-14803526 9.31e-01 120 chr2L:14235132-14235252 7.54e-01 120 chr3R:12985872-12985992 9.91e-01 120 chr3L:12271407-12271527 8.80e-01 120 chr3L:6885778-6885898 9.81e-01 120 chr3L:18349485-18349605 1.48e-01 120 chr2R:19437250-19437370 1.08e-02 13_[+4(2.78e-05)]_99 chr2R:15247900-15248020 4.06e-01 120 chr2R:23933642-23933762 1.18e-02 101_[+4(1.44e-05)]_11 chr2R:20618447-20618567 9.75e-01 120 chr3R:11617528-11617648 3.48e-02 88_[+4(7.38e-05)]_24 chr2R:11628115-11628235 1.36e-02 107_[+4(2.78e-05)]_5 chr3L:9004969-9005089 4.34e-01 120 chr2L:19817228-19817348 2.17e-03 29_[+3(1.57e-05)]_83 chr3L:6174002-6174122 4.38e-01 120 chr3R:10449118-10449238 2.16e-01 120 chr3L:110088-110208 9.31e-01 120 chr3R:7920354-7920474 1.89e-03 50_[+3(3.14e-05)]_48_[+2(5.74e-05)]_\ 6 chr3L:905150-905270 3.16e-02 81_[+4(7.79e-06)]_31 chr3R:29130963-29131083 8.87e-01 120 chrX:7166501-7166621 6.16e-01 120 chr3L:10951255-10951375 8.49e-01 120 chr3L:6817098-6817218 9.99e-01 120 chr3R:25074671-25074791 8.79e-01 120 chr3L:4242516-4242636 1.00e+00 120 chr2L:7635300-7635420 6.36e-01 120 chr3R:13901687-13901807 5.47e-06 7_[+3(2.43e-06)]_31_[+5(2.94e-05)]_\ 53_[+2(4.65e-05)]_5 chr3R:23345229-23345349 9.06e-01 120 chr3R:8362618-8362738 9.90e-01 120 chr3L:13411159-13411279 2.77e-01 120 chr2R:11451861-11451981 3.77e-01 120 chr3L:9042754-9042874 2.78e-01 120 chr2R:7955951-7956071 1.00e+00 120 chr3R:15652738-15652858 9.78e-01 120 chr3R:8954994-8955114 9.98e-01 120 chr2R:21160523-21160643 1.63e-01 120 chr3R:16771680-16771800 2.67e-02 85_[+1(1.88e-05)]_27 chr2R:21101886-21102006 8.98e-05 55_[+4(1.14e-05)]_24_[+2(4.65e-05)]_\ 25 chr3L:3978083-3978203 9.12e-01 120 chr3L:3873191-3873311 9.78e-01 120 chr3L:8629052-8629172 6.16e-01 120 chr2L:19884603-19884723 5.75e-01 120 chr3L:16853600-16853720 6.44e-01 120 chr3R:24817143-24817263 9.95e-01 120 chr3L:6981979-6982099 1.00e+00 120 chr3R:11368861-11368981 9.46e-01 120 chr3L:16749827-16749947 1.00e+00 120 chr2L:7293585-7293705 1.87e-01 120 chr3R:29265279-29265399 2.42e-01 120 chr3R:26945381-26945501 7.80e-01 120 chr2L:14490745-14490865 2.51e-05 30_[+2(7.38e-06)]_8_[+3(2.66e-05)]_\ 66 chr3L:14335986-14336106 9.96e-01 120 chr3L:12606425-12606545 4.47e-03 3_[+3(8.33e-05)]_42_[+1(3.76e-05)]_\ 59 chr3R:13713641-13713761 6.29e-01 120 chrX:12225439-12225559 1.00e+00 120 chr3R:6368689-6368809 9.46e-01 120 chr3R:30039607-30039727 4.61e-01 120 chr3R:29255271-29255391 8.94e-02 120 chr3L:18297484-18297604 3.77e-01 120 chr2L:19059000-19059120 7.60e-01 120 chr2R:12727663-12727783 1.00e+00 120 chr2L:8071726-8071846 9.15e-01 120 chr2L:14537557-14537677 8.05e-01 120 chr3R:23157863-23157983 4.47e-01 120 chr3R:30263839-30263959 4.31e-02 120 chr2L:20676007-20676127 3.11e-01 120 chrX:12029010-12029130 3.29e-05 29_[+4(7.38e-05)]_9_[+3(6.05e-06)]_\ 40_[+4(5.76e-05)]_18 chr3R:11852091-11852211 9.98e-01 120 chr2L:14562371-14562491 9.80e-01 120 chr2R:14981154-14981274 2.66e-02 6_[+4(7.79e-06)]_106 chr3R:16764149-16764269 3.23e-03 20_[+2(4.65e-05)]_92 chr3L:18402669-18402789 8.15e-01 120 chr3L:3875154-3875274 9.74e-01 120 chr3L:18204062-18204182 8.49e-01 120 chr3L:5857052-5857172 7.12e-01 120 chr3L:10847852-10847972 9.66e-01 120 chr3R:13799782-13799902 4.93e-01 120 chr3L:11398782-11398902 9.27e-01 120 chr2L:10428635-10428755 2.86e-01 120 chr3L:1414153-1414273 2.78e-01 120 chr3L:21484022-21484142 4.42e-05 51_[+4(7.38e-05)]_61 chr2R:9681850-9681970 5.46e-02 120 chr2L:11091291-11091411 1.66e-01 91_[+4(7.38e-05)]_21 chr2L:4133222-4133342 9.28e-01 120 chr3L:15967965-15968085 8.20e-01 120 chr3R:15265483-15265603 2.29e-01 120 chrX:12221687-12221807 3.10e-01 120 chr2R:11640940-11641060 9.58e-03 120 chr3R:29089788-29089908 8.42e-01 120 chrX:16275911-16276031 1.35e-02 27_[+3(2.05e-05)]_85 chr2R:19860309-19860429 2.94e-01 120 chr3R:15837180-15837300 1.00e+00 120 chr2L:17473254-17473374 3.60e-01 120 chr2R:11825288-11825408 4.01e-02 2_[+3(4.85e-06)]_110 chr2L:7532762-7532882 1.09e-01 120 chr2L:19377518-19377638 5.02e-01 120 chr2L:5520019-5520139 7.90e-01 120 chrX:9135122-9135242 1.29e-01 120 chr3L:22727913-22728033 9.16e-01 120 chr2R:21017527-21017647 1.00e+00 120 chr3L:10767321-10767441 9.76e-01 120 chr3L:8951145-8951265 9.16e-01 120 chr3R:11372739-11372859 4.58e-05 5_[+4(3.37e-05)]_14_[+3(6.05e-07)]_\ 85 chr2L:5245721-5245841 6.25e-01 120 chr2R:20587297-20587417 8.33e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************