******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17806.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:21799410-21799530 1.0000 120 chr2R:14076231-14076351 1.0000 120 chr3L:15229599-15229719 1.0000 120 chrX:3555584-3555704 1.0000 120 chr2R:17499305-17499425 1.0000 120 chr3R:23791635-23791755 1.0000 120 chr3L:6391502-6391622 1.0000 120 chr3L:10757117-10757237 1.0000 120 chr3R:29279717-29279837 1.0000 120 chr3R:24953291-24953411 1.0000 120 chr2R:8995109-8995229 1.0000 120 chr3R:8958441-8958561 1.0000 120 chr3L:16259693-16259813 1.0000 120 chr3R:19079287-19079407 1.0000 120 chr2R:19964403-19964523 1.0000 120 chrX:19173082-19173202 1.0000 120 chr3L:1693020-1693140 1.0000 120 chrX:17537376-17537496 1.0000 120 chr3R:21829828-21829948 1.0000 120 chr3R:30259698-30259818 1.0000 120 chr2R:11083853-11083973 1.0000 120 chr3L:16174901-16175021 1.0000 120 chr3L:8860062-8860182 1.0000 120 chrX:3045548-3045668 1.0000 120 chr3R:29091701-29091821 1.0000 120 chr3L:3442186-3442306 1.0000 120 chr3R:10533292-10533412 1.0000 120 chr2R:21377372-21377492 1.0000 120 chr3L:21243532-21243652 1.0000 120 chr2R:19149873-19149993 1.0000 120 chr2L:11048416-11048536 1.0000 120 chr2L:5479245-5479365 1.0000 120 chr3R:5118316-5118436 1.0000 120 chr3L:3443291-3443411 1.0000 120 chr3R:30265015-30265135 1.0000 120 chr3R:14847952-14848072 1.0000 120 chr2R:18343061-18343181 1.0000 120 chr3R:5053003-5053123 1.0000 120 chr2R:21224993-21225113 1.0000 120 chr3L:5864041-5864161 1.0000 120 chr3L:18245089-18245209 1.0000 120 chr2R:8318255-8318375 1.0000 120 chr3R:24970827-24970947 1.0000 120 chr2R:18215415-18215535 1.0000 120 chr3R:14421967-14422087 1.0000 120 chr3R:27179124-27179244 1.0000 120 chr3L:13214979-13215099 1.0000 120 chr3L:7632937-7633057 1.0000 120 chr2L:653951-654071 1.0000 120 chr2L:4096684-4096804 1.0000 120 chr2R:15063796-15063916 1.0000 120 chr3R:16523495-16523615 1.0000 120 chr3L:15596118-15596238 1.0000 120 chr2R:8749866-8749986 1.0000 120 chr2L:9981977-9982097 1.0000 120 chr2R:15825526-15825646 1.0000 120 chr3L:5941707-5941827 1.0000 120 chr3L:6366767-6366887 1.0000 120 chr2R:12767355-12767475 1.0000 120 chr3L:19055198-19055318 1.0000 120 chr2L:7868767-7868887 1.0000 120 chrX:7558779-7558899 1.0000 120 chr2R:14929645-14929765 1.0000 120 chr3L:12706622-12706742 1.0000 120 chr2L:16590858-16590978 1.0000 120 chr3R:7953140-7953260 1.0000 120 chr3L:10904879-10904999 1.0000 120 chrX:9467159-9467279 1.0000 120 chr2R:12536497-12536617 1.0000 120 chr3L:17926646-17926766 1.0000 120 chr3L:3644457-3644577 1.0000 120 chr3R:18469601-18469721 1.0000 120 chr3L:20592708-20592828 1.0000 120 chr3R:27197721-27197841 1.0000 120 chr3L:15220479-15220599 1.0000 120 chrX:18800348-18800468 1.0000 120 chr3L:6396053-6396173 1.0000 120 chr2L:5751564-5751684 1.0000 120 chr3R:16542032-16542152 1.0000 120 chr3L:21721011-21721131 1.0000 120 chr3L:4749269-4749389 1.0000 120 chr3L:705264-705384 1.0000 120 chr2L:15390583-15390703 1.0000 120 chr2R:11749596-11749716 1.0000 120 chr3R:14275638-14275758 1.0000 120 chr2L:14574997-14575117 1.0000 120 chr3L:3444379-3444499 1.0000 120 chr3R:14373970-14374090 1.0000 120 chr2L:1459496-1459616 1.0000 120 chr2L:1455656-1455776 1.0000 120 chr3R:8922966-8923086 1.0000 120 chr3L:3555226-3555346 1.0000 120 chrX:6745723-6745843 1.0000 120 chr3L:767035-767155 1.0000 120 chr2L:7997843-7997963 1.0000 120 chr3R:21649631-21649751 1.0000 120 chr3L:21253087-21253207 1.0000 120 chr3R:11937568-11937688 1.0000 120 chr3R:29291058-29291178 1.0000 120 chr2L:21006724-21006844 1.0000 120 chr3R:5112566-5112686 1.0000 120 chrX:13345474-13345594 1.0000 120 chr2L:15909427-15909547 1.0000 120 chr2L:13146388-13146508 1.0000 120 chrX:379666-379786 1.0000 120 chr3L:14145752-14145872 1.0000 120 chr3L:6371536-6371656 1.0000 120 chr2R:7927074-7927194 1.0000 120 chr3L:17577022-17577142 1.0000 120 chrX:5020160-5020280 1.0000 120 chr2R:17831932-17832052 1.0000 120 chr3R:10630134-10630254 1.0000 120 chr3R:13215256-13215376 1.0000 120 chr2L:5372672-5372792 1.0000 120 chr3R:22158388-22158508 1.0000 120 chr3L:20635694-20635814 1.0000 120 chr2L:646657-646777 1.0000 120 chr3R:10829887-10830007 1.0000 120 chr3L:6364364-6364484 1.0000 120 chr3L:14462470-14462590 1.0000 120 chr2R:15000542-15000662 1.0000 120 chr3L:6458834-6458954 1.0000 120 chr3R:22184191-22184311 1.0000 120 chr2R:16212937-16213057 1.0000 120 chr2L:20989671-20989791 1.0000 120 chr2L:2485451-2485571 1.0000 120 chr3R:17825964-17826084 1.0000 120 chrX:6003954-6004074 1.0000 120 chr2R:19987199-19987319 1.0000 120 chr3R:21935315-21935435 1.0000 120 chr3L:5945721-5945841 1.0000 120 chrX:21127407-21127527 1.0000 120 chr3R:11154031-11154151 1.0000 120 chr2L:5288415-5288535 1.0000 120 chr3L:766438-766558 1.0000 120 chr2R:21883195-21883315 1.0000 120 chr2L:14651748-14651868 1.0000 120 chr3L:14350294-14350414 1.0000 120 chr3R:14007640-14007760 1.0000 120 chr3R:25651575-25651695 1.0000 120 chr3R:18787361-18787481 1.0000 120 chr2L:7541462-7541582 1.0000 120 chr3L:2636512-2636632 1.0000 120 chr3R:18998473-18998593 1.0000 120 chr2L:13893670-13893790 1.0000 120 chr3L:15240876-15240996 1.0000 120 chr2L:2432978-2433098 1.0000 120 chrX:20482971-20483091 1.0000 120 chr3L:4346464-4346584 1.0000 120 chr3L:10562387-10562507 1.0000 120 chr3L:13227054-13227174 1.0000 120 chr3L:2866994-2867114 1.0000 120 chr3L:20990374-20990494 1.0000 120 chr3L:4383238-4383358 1.0000 120 chr2R:8645871-8645991 1.0000 120 chr2R:21847837-21847957 1.0000 120 chr3L:20914539-20914659 1.0000 120 chr3L:484963-485083 1.0000 120 chr3R:10455045-10455165 1.0000 120 chr3L:14146517-14146637 1.0000 120 chr3L:8765574-8765694 1.0000 120 chr3L:6308749-6308869 1.0000 120 chr3L:16489924-16490044 1.0000 120 chrX:14017566-14017686 1.0000 120 chr3R:29570387-29570507 1.0000 120 chr2L:21005572-21005692 1.0000 120 chr3L:10923116-10923236 1.0000 120 chr2L:15459067-15459187 1.0000 120 chr3R:8811044-8811164 1.0000 120 chr2R:11544171-11544291 1.0000 120 chr3R:26832018-26832138 1.0000 120 chr2L:4028123-4028243 1.0000 120 chr3L:14610609-14610729 1.0000 120 chr3L:15174258-15174378 1.0000 120 chr2L:11052516-11052636 1.0000 120 chr2L:7899275-7899395 1.0000 120 chr3L:3106277-3106397 1.0000 120 chr2R:13473952-13474072 1.0000 120 chr3L:20582493-20582613 1.0000 120 chr3R:19074393-19074513 1.0000 120 chr2L:18003168-18003288 1.0000 120 chr2L:3562500-3562620 1.0000 120 chr3R:31963241-31963361 1.0000 120 chr2L:18468144-18468264 1.0000 120 chr2R:16836488-16836608 1.0000 120 chr3L:3338968-3339088 1.0000 120 chr3L:18078704-18078824 1.0000 120 chr2R:11755341-11755461 1.0000 120 chr3R:14673089-14673209 1.0000 120 chr2R:9282849-9282969 1.0000 120 chr2L:19156592-19156712 1.0000 120 chr3R:10466419-10466539 1.0000 120 chr2L:8855636-8855756 1.0000 120 chr3L:20632488-20632608 1.0000 120 chrX:342556-342676 1.0000 120 chr3R:19255400-19255520 1.0000 120 chr2R:24807854-24807974 1.0000 120 chr2L:15386867-15386987 1.0000 120 chr2R:21851702-21851822 1.0000 120 chr2L:11069622-11069742 1.0000 120 chr3R:23878431-23878551 1.0000 120 chr2L:8919832-8919952 1.0000 120 chrX:11658598-11658718 1.0000 120 chrX:8839542-8839662 1.0000 120 chr2L:7323090-7323210 1.0000 120 chrX:7540906-7541026 1.0000 120 chrX:17542896-17543016 1.0000 120 chr2L:3582861-3582981 1.0000 120 chrX:14134046-14134166 1.0000 120 chr3L:13107420-13107540 1.0000 120 chrX:6022217-6022337 1.0000 120 chr3L:2533130-2533250 1.0000 120 chr3L:2386572-2386692 1.0000 120 chr3L:776351-776471 1.0000 120 chr3L:10928095-10928215 1.0000 120 chr3L:20989010-20989130 1.0000 120 chr2L:7897373-7897493 1.0000 120 chr3L:7264222-7264342 1.0000 120 chrX:9468441-9468561 1.0000 120 chr2L:18523116-18523236 1.0000 120 chr2R:11033710-11033830 1.0000 120 chr3R:14389420-14389540 1.0000 120 chr3L:11448496-11448616 1.0000 120 chr3R:15631027-15631147 1.0000 120 chr3R:27205128-27205248 1.0000 120 chr2L:17750308-17750428 1.0000 120 chr3L:21122629-21122749 1.0000 120 chr2R:14317105-14317225 1.0000 120 chr3L:7611379-7611499 1.0000 120 chr3R:24261755-24261875 1.0000 120 chr2R:9498808-9498928 1.0000 120 chr3L:1064483-1064603 1.0000 120 chr3L:2117153-2117273 1.0000 120 chr2L:20956927-20957047 1.0000 120 chr2L:723927-724047 1.0000 120 chr3L:16873250-16873370 1.0000 120 chr3L:10928857-10928977 1.0000 120 chr2L:19142619-19142739 1.0000 120 chr3L:15264741-15264861 1.0000 120 chr2R:18926599-18926719 1.0000 120 chr3R:29300184-29300304 1.0000 120 chrX:6028020-6028140 1.0000 120 chr3L:13109509-13109629 1.0000 120 chr2R:10656096-10656216 1.0000 120 chr2L:20381476-20381596 1.0000 120 chr2L:4071696-4071816 1.0000 120 chr3L:16762331-16762451 1.0000 120 chr3L:12030653-12030773 1.0000 120 chr3L:20952225-20952345 1.0000 120 chrX:7535007-7535127 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG17806/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17806.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.364 C 0.139 G 0.14 T 0.357 Background letter frequencies (from file dataset with add-one prior applied): A 0.364 C 0.139 G 0.14 T 0.357 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YTCWGTGC MEME-1 width = 8 sites = 17 llr = 167 E-value = 8.9e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTCWGTGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::4:::: pos.-specific C 61911::9 probability G ::119:a: matrix T 49:4:a:1 bits 2.8 * 2.6 * * * 2.3 * * ** 2.0 * * ** Relative 1.7 * * ** Entropy 1.4 * * **** (14.1 bits) 1.1 *** **** 0.9 *** **** 0.6 *** **** 0.3 *** **** 0.0 -------- Multilevel CTCAGTGC consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCWGTGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6745723-6745843 107 2.39e-06 ATTCATTATT CTCTGTGC ACTCGA chr3R:18469601-18469721 112 2.39e-06 ATTTATTTTG CTCTGTGC A chr2R:14929645-14929765 113 2.39e-06 GTACATTTTT CTCTGTGC chr3L:6391502-6391622 109 2.39e-06 TATATATTTT CTCTGTGC ACTG chr3R:19074393-19074513 108 4.84e-06 AAAATTTTCC CTCAGTGC ATTGA chr3L:10562387-10562507 106 4.84e-06 CACTATTTTT CTCAGTGC ATGTGTG chr2L:14651748-14651868 108 4.84e-06 TGTAATTTTT CTCAGTGC AATCG chr3L:18245089-18245209 41 1.51e-05 AATCAACATC TTCTGTGC ACAAAACTTA chrX:9468441-9468561 37 2.38e-05 TATACTCAAT TTCCGTGC TTAAAAAAAT chr2R:21377372-21377492 106 2.38e-05 TAATATTTCT TTCCGTGC ATACTTT chr3R:25651575-25651695 98 2.66e-05 GCCCATTTTT TTCGGTGC TGCGAGCAGC chr2R:11033710-11033830 93 2.89e-05 AGCTAATAAC TCCTGTGC AACCTTAGAA chrX:6028020-6028140 98 3.62e-05 ATTGAGGATC CTGTGTGC ATACTCTTTA chr3L:20632488-20632608 112 3.62e-05 ATATATTTTT TCCAGTGC A chr3L:16259693-16259813 76 4.11e-05 AGACATATAT CTCACTGC TTAATATATT chr3L:13109509-13109629 107 5.63e-05 ACAAATTGTG CTCAGTGT CTGCTT chr2R:11544171-11544291 108 5.63e-05 GATACGTTTT CTCAGTGT AAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCWGTGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6745723-6745843 2.4e-06 106_[+1]_6 chr3R:18469601-18469721 2.4e-06 111_[+1]_1 chr2R:14929645-14929765 2.4e-06 112_[+1] chr3L:6391502-6391622 2.4e-06 108_[+1]_4 chr3R:19074393-19074513 4.8e-06 107_[+1]_5 chr3L:10562387-10562507 4.8e-06 105_[+1]_7 chr2L:14651748-14651868 4.8e-06 107_[+1]_5 chr3L:18245089-18245209 1.5e-05 40_[+1]_72 chrX:9468441-9468561 2.4e-05 36_[+1]_76 chr2R:21377372-21377492 2.4e-05 105_[+1]_7 chr3R:25651575-25651695 2.7e-05 97_[+1]_15 chr2R:11033710-11033830 2.9e-05 92_[+1]_20 chrX:6028020-6028140 3.6e-05 97_[+1]_15 chr3L:20632488-20632608 3.6e-05 111_[+1]_1 chr3L:16259693-16259813 4.1e-05 75_[+1]_37 chr3L:13109509-13109629 5.6e-05 106_[+1]_6 chr2R:11544171-11544291 5.6e-05 107_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCWGTGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTCWGTGC width=8 seqs=17 chrX:6745723-6745843 ( 107) CTCTGTGC 1 chr3R:18469601-18469721 ( 112) CTCTGTGC 1 chr2R:14929645-14929765 ( 113) CTCTGTGC 1 chr3L:6391502-6391622 ( 109) CTCTGTGC 1 chr3R:19074393-19074513 ( 108) CTCAGTGC 1 chr3L:10562387-10562507 ( 106) CTCAGTGC 1 chr2L:14651748-14651868 ( 108) CTCAGTGC 1 chr3L:18245089-18245209 ( 41) TTCTGTGC 1 chrX:9468441-9468561 ( 37) TTCCGTGC 1 chr2R:21377372-21377492 ( 106) TTCCGTGC 1 chr3R:25651575-25651695 ( 98) TTCGGTGC 1 chr2R:11033710-11033830 ( 93) TCCTGTGC 1 chrX:6028020-6028140 ( 98) CTGTGTGC 1 chr3L:20632488-20632608 ( 112) TCCAGTGC 1 chr3L:16259693-16259813 ( 76) CTCACTGC 1 chr3L:13109509-13109629 ( 107) CTCAGTGT 1 chr2R:11544171-11544291 ( 108) CTCAGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCWGTGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 8.9e+001 -1073 222 -1073 -2 -1073 -24 -1073 131 -1073 276 -125 -1073 18 -24 -125 21 -1073 -124 275 -1073 -1073 -1073 -1073 149 -1073 -1073 284 -1073 -1073 266 -1073 -160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCWGTGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 8.9e+001 0.000000 0.647059 0.000000 0.352941 0.000000 0.117647 0.000000 0.882353 0.000000 0.941176 0.058824 0.000000 0.411765 0.117647 0.058824 0.411765 0.000000 0.058824 0.941176 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.882353 0.000000 0.117647 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTCWGTGC MEME-1 regular expression -------------------------------------------------------------------------------- [CT]TC[AT]GTGC -------------------------------------------------------------------------------- Time 8.87 secs. ******************************************************************************** ******************************************************************************** MOTIF SCCCCACG MEME-2 width = 8 sites = 9 llr = 100 E-value = 3.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCCCCACG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::1:7:: pos.-specific C 4889a191 probability G 622::::9 matrix T :::::21: bits 2.8 * 2.6 * 2.3 ** ** 2.0 ***** ** Relative 1.7 ***** ** Entropy 1.4 ***** ** (16.0 bits) 1.1 ***** ** 0.9 ***** ** 0.6 ***** ** 0.3 ******** 0.0 -------- Multilevel GCCCCACG consensus CGG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCCCACG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:3562500-3562620 35 3.70e-07 TATGTACTTG GCCCCACG TTGGGCGCTA chr3L:2636512-2636632 76 1.02e-06 CCATAACTCC CCCCCCCG TTTCTGCATT chr2R:10656096-10656216 102 2.49e-06 TAGTGTAACA CCCCCTCG AACTTTGCGG chr2R:11083853-11083973 71 2.49e-06 CTTGCTAAAG GCGCCACG TAAAACTTTG chr3L:8765574-8765694 9 5.26e-06 TATTTTTA GGCCCTCG CATGGGAGCA chr3L:766438-766558 70 5.26e-06 AAATAACTAA CCCCCACC CCAGCCACTT chr3R:27197721-27197841 85 6.36e-06 AAACATTTTT GGGCCACG TTGTGTTGCA chr3L:20989010-20989130 18 8.93e-06 GATTTAAAAA GCCCCATG CATTTCTATT chr3R:10455045-10455165 24 1.13e-05 CACAATGTAA CCCACACG ATGTTAATGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCCCACG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3562500-3562620 3.7e-07 34_[+2]_78 chr3L:2636512-2636632 1e-06 75_[+2]_37 chr2R:10656096-10656216 2.5e-06 101_[+2]_11 chr2R:11083853-11083973 2.5e-06 70_[+2]_42 chr3L:8765574-8765694 5.3e-06 8_[+2]_104 chr3L:766438-766558 5.3e-06 69_[+2]_43 chr3R:27197721-27197841 6.4e-06 84_[+2]_28 chr3L:20989010-20989130 8.9e-06 17_[+2]_95 chr3R:10455045-10455165 1.1e-05 23_[+2]_89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCCCACG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCCCCACG width=8 seqs=9 chr2L:3562500-3562620 ( 35) GCCCCACG 1 chr3L:2636512-2636632 ( 76) CCCCCCCG 1 chr2R:10656096-10656216 ( 102) CCCCCTCG 1 chr2R:11083853-11083973 ( 71) GCGCCACG 1 chr3L:8765574-8765694 ( 9) GGCCCTCG 1 chr3L:766438-766558 ( 70) CCCCCACC 1 chr3R:27197721-27197841 ( 85) GGGCCACG 1 chr3L:20989010-20989130 ( 18) GCCCCATG 1 chr3R:10455045-10455165 ( 24) CCCACACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCCCACG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 3.8e+002 -982 167 199 -982 -982 248 67 -982 -982 248 67 -982 -171 267 -982 -982 -982 284 -982 -982 87 -32 -982 -68 -982 267 -982 -168 -982 -32 267 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCCCACG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 3.8e+002 0.000000 0.444444 0.555556 0.000000 0.000000 0.777778 0.222222 0.000000 0.000000 0.777778 0.222222 0.000000 0.111111 0.888889 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.111111 0.000000 0.222222 0.000000 0.888889 0.000000 0.111111 0.000000 0.111111 0.888889 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCCCACG MEME-2 regular expression -------------------------------------------------------------------------------- [GC][CG][CG]CC[AT]CG -------------------------------------------------------------------------------- Time 15.15 secs. ******************************************************************************** ******************************************************************************** MOTIF TGMCGCCC MEME-3 width = 8 sites = 7 llr = 82 E-value = 8.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGMCGCCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::4:::1: pos.-specific C 1:67:a7a probability G :a::a:1: matrix T 9::3:::: bits 2.8 * ** * 2.6 * ** * 2.3 * ** * 2.0 * ** * Relative 1.7 * *** * Entropy 1.4 * ***** (16.8 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TGCCGCCC consensus AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGMCGCCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:29091701-29091821 20 3.63e-07 TAACAATTGA TGCCGCCC ATTAAATTAT chr3R:11937568-11937688 113 5.04e-07 CCGCCCACTT CGCCGCCC chr3R:25651575-25651695 84 1.46e-06 AGCTCCAAAA TGACGCCC ATTTTTTTCG chrX:8839542-8839662 110 2.75e-06 CCATATTCGT TGCTGCCC TAG chr3R:24953291-24953411 22 4.22e-06 TTTGGTATCA TGCCGCAC TATAAAACTC chr3R:24970827-24970947 21 5.54e-06 ATTTTATTTG TGACGCGC CTATACGTTT chr2L:11052516-11052636 53 7.98e-06 TTCACATAAC TGATGCCC TTCCGGAAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGMCGCCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29091701-29091821 3.6e-07 19_[+3]_93 chr3R:11937568-11937688 5e-07 112_[+3] chr3R:25651575-25651695 1.5e-06 83_[+3]_29 chrX:8839542-8839662 2.8e-06 109_[+3]_3 chr3R:24953291-24953411 4.2e-06 21_[+3]_91 chr3R:24970827-24970947 5.5e-06 20_[+3]_92 chr2L:11052516-11052636 8e-06 52_[+3]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGMCGCCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGMCGCCC width=8 seqs=7 chr3R:29091701-29091821 ( 20) TGCCGCCC 1 chr3R:11937568-11937688 ( 113) CGCCGCCC 1 chr3R:25651575-25651695 ( 84) TGACGCCC 1 chrX:8839542-8839662 ( 110) TGCTGCCC 1 chr3R:24953291-24953411 ( 22) TGCCGCAC 1 chr3R:24970827-24970947 ( 21) TGACGCGC 1 chr2L:11052516-11052636 ( 53) TGATGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGMCGCCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.2008 E= 8.1e+003 -945 4 -945 126 -945 -945 284 -945 23 204 -945 -945 -945 236 -945 -32 -945 -945 284 -945 -945 284 -945 -945 -135 236 3 -945 -945 284 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGMCGCCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 8.1e+003 0.000000 0.142857 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 0.428571 0.571429 0.000000 0.000000 0.000000 0.714286 0.000000 0.285714 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.714286 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGMCGCCC MEME-3 regular expression -------------------------------------------------------------------------------- TG[CA][CT]GCCC -------------------------------------------------------------------------------- Time 21.41 secs. ******************************************************************************** ******************************************************************************** MOTIF GTTGTGSG MEME-4 width = 8 sites = 5 llr = 60 E-value = 9.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTTGTGSG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :2::::4: probability G a::a:a6a matrix T :8a:a::: bits 2.8 * * * * 2.6 * * * * 2.3 * * * * 2.0 * * *** Relative 1.7 * * *** Entropy 1.4 * ****** (17.2 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GTTGTGGG consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGTGSG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:18523116-18523236 36 2.45e-06 TAAGCAGGAT GTTGTGGG TATTTTTGCA chr2L:7899275-7899395 79 2.45e-06 TCCATTTGTG GTTGTGGG TCTCTTTTGG chr3R:21829828-21829948 52 2.45e-06 CAGACAATGT GTTGTGGG GGTAGGGCTC chr3R:5112566-5112686 90 4.88e-06 TTCAGCATTC GTTGTGCG TCGTTCAGGG chr3L:3106277-3106397 24 6.78e-06 CGATTTCCTA GCTGTGCG GAGAACGTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGTGSG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:18523116-18523236 2.4e-06 35_[+4]_77 chr2L:7899275-7899395 2.4e-06 78_[+4]_34 chr3R:21829828-21829948 2.4e-06 51_[+4]_61 chr3R:5112566-5112686 4.9e-06 89_[+4]_23 chr3L:3106277-3106397 6.8e-06 23_[+4]_89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGTGSG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTTGTGSG width=8 seqs=5 chr2L:18523116-18523236 ( 36) GTTGTGGG 1 chr2L:7899275-7899395 ( 79) GTTGTGGG 1 chr3R:21829828-21829948 ( 52) GTTGTGGG 1 chr3R:5112566-5112686 ( 90) GTTGTGCG 1 chr3L:3106277-3106397 ( 24) GCTGTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGTGSG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 9.5e+004 -897 -897 283 -897 -897 52 -897 116 -897 -897 -897 148 -897 -897 283 -897 -897 -897 -897 148 -897 -897 283 -897 -897 152 210 -897 -897 -897 283 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGTGSG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 9.5e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTTGTGSG MEME-4 regular expression -------------------------------------------------------------------------------- G[TC]TGTG[GC]G -------------------------------------------------------------------------------- Time 27.67 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGAACT MEME-5 width = 8 sites = 5 llr = 58 E-value = 1.8e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGAACT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::8a:: pos.-specific C :::22:8: probability G aaa8::2: matrix T :::::::a bits 2.8 *** 2.6 *** 2.3 *** 2.0 **** * Relative 1.7 **** * Entropy 1.4 **** *** (16.7 bits) 1.1 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GGGGAACT consensus CC G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAACT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:14134046-14134166 2 2.53e-06 T GGGGAACT GTTCAAAAAT chrX:7540906-7541026 68 2.53e-06 CAAGTCAAAT GGGGAACT CTCTTTAGCA chrX:18800348-18800468 21 2.53e-06 CTTTTCAGCT GGGGAACT CTTCAAACCA chr3L:15596118-15596238 29 8.54e-06 TTTTAGAATA GGGGAAGT CATACTTCCA chr2R:16836488-16836608 104 1.05e-05 CGAAGACTAA GGGCCACT ATATTTGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAACT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14134046-14134166 2.5e-06 1_[+5]_111 chrX:7540906-7541026 2.5e-06 67_[+5]_45 chrX:18800348-18800468 2.5e-06 20_[+5]_92 chr3L:15596118-15596238 8.5e-06 28_[+5]_84 chr2R:16836488-16836608 1e-05 103_[+5]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAACT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGAACT width=8 seqs=5 chrX:14134046-14134166 ( 2) GGGGAACT 1 chrX:7540906-7541026 ( 68) GGGGAACT 1 chrX:18800348-18800468 ( 21) GGGGAACT 1 chr3L:15596118-15596238 ( 29) GGGGAAGT 1 chr2R:16836488-16836608 ( 104) GGGCCACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAACT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 1.8e+005 -897 -897 283 -897 -897 -897 283 -897 -897 -897 283 -897 -897 52 251 -897 113 52 -897 -897 146 -897 -897 -897 -897 252 51 -897 -897 -897 -897 148 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAACT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.8e+005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAACT MEME-5 regular expression -------------------------------------------------------------------------------- GGG[GC][AC]A[CG]T -------------------------------------------------------------------------------- Time 33.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21799410-21799530 6.27e-01 120 chr2R:14076231-14076351 7.31e-01 120 chr3L:15229599-15229719 6.21e-01 120 chrX:3555584-3555704 6.10e-01 120 chr2R:17499305-17499425 2.38e-01 120 chr3R:23791635-23791755 8.00e-01 120 chr3L:6391502-6391622 6.74e-03 108_[+1(2.39e-06)]_4 chr3L:10757117-10757237 2.86e-01 120 chr3R:29279717-29279837 4.98e-01 120 chr3R:24953291-24953411 4.93e-03 21_[+3(4.22e-06)]_91 chr2R:8995109-8995229 7.26e-01 120 chr3R:8958441-8958561 5.85e-01 120 chr3L:16259693-16259813 3.06e-01 75_[+1(4.11e-05)]_37 chr3R:19079287-19079407 2.12e-01 120 chr2R:19964403-19964523 5.04e-01 120 chrX:19173082-19173202 9.76e-02 120 chr3L:1693020-1693140 4.77e-01 120 chrX:17537376-17537496 7.89e-01 120 chr3R:21829828-21829948 1.84e-03 51_[+4(2.45e-06)]_61 chr3R:30259698-30259818 3.49e-01 120 chr2R:11083853-11083973 6.15e-03 70_[+2(2.49e-06)]_42 chr3L:16174901-16175021 3.82e-01 120 chr3L:8860062-8860182 3.82e-01 120 chrX:3045548-3045668 8.61e-01 120 chr3R:29091701-29091821 1.16e-03 19_[+3(3.63e-07)]_93 chr3L:3442186-3442306 9.85e-01 120 chr3R:10533292-10533412 8.05e-01 120 chr2R:21377372-21377492 7.50e-02 105_[+1(2.38e-05)]_7 chr3L:21243532-21243652 9.43e-01 120 chr2R:19149873-19149993 8.92e-01 120 chr2L:11048416-11048536 6.91e-01 120 chr2L:5479245-5479365 7.75e-02 120 chr3R:5118316-5118436 1.00e+00 120 chr3L:3443291-3443411 8.47e-01 120 chr3R:30265015-30265135 5.04e-01 120 chr3R:14847952-14848072 1.57e-02 120 chr2R:18343061-18343181 1.44e-01 120 chr3R:5053003-5053123 5.94e-01 120 chr2R:21224993-21225113 1.14e-01 120 chr3L:5864041-5864161 8.92e-01 120 chr3L:18245089-18245209 4.06e-02 40_[+1(1.51e-05)]_72 chr2R:8318255-8318375 8.76e-01 120 chr3R:24970827-24970947 4.98e-02 20_[+3(5.54e-06)]_92 chr2R:18215415-18215535 1.00e+00 120 chr3R:14421967-14422087 9.88e-01 120 chr3R:27179124-27179244 1.92e-01 120 chr3L:13214979-13215099 2.99e-01 120 chr3L:7632937-7633057 4.05e-01 120 chr2L:653951-654071 8.24e-01 120 chr2L:4096684-4096804 9.74e-01 120 chr2R:15063796-15063916 9.78e-01 120 chr3R:16523495-16523615 3.98e-02 120 chr3L:15596118-15596238 3.94e-03 28_[+5(8.54e-06)]_84 chr2R:8749866-8749986 3.11e-01 120 chr2L:9981977-9982097 8.47e-01 120 chr2R:15825526-15825646 2.25e-01 120 chr3L:5941707-5941827 5.32e-02 120 chr3L:6366767-6366887 2.72e-02 120 chr2R:12767355-12767475 8.55e-01 120 chr3L:19055198-19055318 8.77e-01 120 chr2L:7868767-7868887 1.32e-01 120 chrX:7558779-7558899 2.32e-01 120 chr2R:14929645-14929765 2.33e-03 112_[+1(2.39e-06)] chr3L:12706622-12706742 7.90e-01 120 chr2L:16590858-16590978 1.64e-01 120 chr3R:7953140-7953260 3.31e-01 120 chr3L:10904879-10904999 1.16e-02 120 chrX:9467159-9467279 6.74e-01 120 chr2R:12536497-12536617 5.82e-01 120 chr3L:17926646-17926766 5.62e-01 120 chr3L:3644457-3644577 6.61e-01 120 chr3R:18469601-18469721 5.59e-04 111_[+1(2.39e-06)]_1 chr3L:20592708-20592828 5.54e-01 120 chr3R:27197721-27197841 1.33e-04 84_[+2(6.36e-06)]_28 chr3L:15220479-15220599 9.82e-01 120 chrX:18800348-18800468 4.08e-03 20_[+5(2.53e-06)]_92 chr3L:6396053-6396173 8.12e-01 120 chr2L:5751564-5751684 4.82e-01 120 chr3R:16542032-16542152 5.45e-01 120 chr3L:21721011-21721131 2.07e-01 120 chr3L:4749269-4749389 7.93e-01 120 chr3L:705264-705384 8.76e-01 120 chr2L:15390583-15390703 9.67e-01 120 chr2R:11749596-11749716 1.87e-01 120 chr3R:14275638-14275758 4.34e-02 120 chr2L:14574997-14575117 3.89e-01 120 chr3L:3444379-3444499 7.51e-01 120 chr3R:14373970-14374090 2.15e-01 120 chr2L:1459496-1459616 9.35e-02 120 chr2L:1455656-1455776 1.00e+00 120 chr3R:8922966-8923086 6.68e-02 120 chr3L:3555226-3555346 8.04e-01 120 chrX:6745723-6745843 8.86e-04 106_[+1(2.39e-06)]_6 chr3L:767035-767155 4.12e-01 120 chr2L:7997843-7997963 7.93e-01 120 chr3R:21649631-21649751 9.91e-01 120 chr3L:21253087-21253207 5.58e-01 120 chr3R:11937568-11937688 5.60e-05 112_[+3(5.04e-07)] chr3R:29291058-29291178 1.56e-02 120 chr2L:21006724-21006844 5.01e-01 120 chr3R:5112566-5112686 7.40e-05 89_[+4(4.88e-06)]_7_[+5(5.59e-05)]_\ 8 chrX:13345474-13345594 1.82e-01 51_[+3(2.76e-05)]_61 chr2L:15909427-15909547 7.55e-01 120 chr2L:13146388-13146508 9.44e-01 120 chrX:379666-379786 7.30e-01 120 chr3L:14145752-14145872 7.48e-01 120 chr3L:6371536-6371656 9.66e-01 120 chr2R:7927074-7927194 4.41e-02 120 chr3L:17577022-17577142 9.65e-01 120 chrX:5020160-5020280 9.94e-01 120 chr2R:17831932-17832052 9.01e-01 120 chr3R:10630134-10630254 9.72e-01 120 chr3R:13215256-13215376 8.31e-01 120 chr2L:5372672-5372792 1.00e+00 120 chr3R:22158388-22158508 3.83e-01 120 chr3L:20635694-20635814 7.83e-03 91_[+2(5.29e-05)]_21 chr2L:646657-646777 4.11e-01 120 chr3R:10829887-10830007 7.77e-01 120 chr3L:6364364-6364484 5.20e-02 120 chr3L:14462470-14462590 8.52e-01 120 chr2R:15000542-15000662 2.21e-01 120 chr3L:6458834-6458954 9.23e-01 120 chr3R:22184191-22184311 8.98e-01 120 chr2R:16212937-16213057 9.60e-01 120 chr2L:20989671-20989791 2.15e-01 120 chr2L:2485451-2485571 1.04e-02 120 chr3R:17825964-17826084 6.95e-01 120 chrX:6003954-6004074 2.83e-02 1_[+5(1.74e-05)]_111 chr2R:19987199-19987319 7.95e-01 120 chr3R:21935315-21935435 2.76e-01 120 chr3L:5945721-5945841 6.64e-01 120 chrX:21127407-21127527 2.09e-01 120 chr3R:11154031-11154151 9.59e-01 120 chr2L:5288415-5288535 2.03e-01 120 chr3L:766438-766558 5.20e-03 69_[+2(5.26e-06)]_3_[+2(7.78e-05)]_\ 32 chr2R:21883195-21883315 9.77e-01 120 chr2L:14651748-14651868 6.67e-02 107_[+1(4.84e-06)]_5 chr3L:14350294-14350414 4.89e-01 120 chr3R:14007640-14007760 9.75e-01 120 chr3R:25651575-25651695 3.06e-06 83_[+3(1.46e-06)]_6_[+1(2.66e-05)]_\ 15 chr3R:18787361-18787481 7.64e-01 120 chr2L:7541462-7541582 9.70e-01 120 chr3L:2636512-2636632 3.02e-04 75_[+2(1.02e-06)]_37 chr3R:18998473-18998593 3.51e-01 120 chr2L:13893670-13893790 8.35e-02 120 chr3L:15240876-15240996 6.35e-01 120 chr2L:2432978-2433098 8.16e-02 120 chrX:20482971-20483091 9.41e-01 120 chr3L:4346464-4346584 6.46e-01 120 chr3L:10562387-10562507 2.71e-02 105_[+1(4.84e-06)]_7 chr3L:13227054-13227174 8.58e-01 120 chr3L:2866994-2867114 4.51e-01 120 chr3L:20990374-20990494 9.73e-01 120 chr3L:4383238-4383358 6.85e-01 120 chr2R:8645871-8645991 8.70e-01 120 chr2R:21847837-21847957 7.17e-01 120 chr3L:20914539-20914659 2.08e-01 120 chr3L:484963-485083 5.45e-02 120 chr3R:10455045-10455165 3.58e-02 23_[+2(1.13e-05)]_89 chr3L:14146517-14146637 9.20e-02 120 chr3L:8765574-8765694 1.22e-04 8_[+2(5.26e-06)]_104 chr3L:6308749-6308869 8.13e-01 120 chr3L:16489924-16490044 5.47e-01 120 chrX:14017566-14017686 6.50e-01 120 chr3R:29570387-29570507 9.99e-01 120 chr2L:21005572-21005692 9.01e-01 120 chr3L:10923116-10923236 4.75e-01 120 chr2L:15459067-15459187 4.25e-01 120 chr3R:8811044-8811164 9.71e-01 120 chr2R:11544171-11544291 2.11e-01 107_[+1(5.63e-05)]_5 chr3R:26832018-26832138 1.74e-01 120 chr2L:4028123-4028243 4.35e-01 120 chr3L:14610609-14610729 4.62e-01 120 chr3L:15174258-15174378 4.78e-01 120 chr2L:11052516-11052636 1.60e-02 52_[+3(7.98e-06)]_60 chr2L:7899275-7899395 3.92e-03 78_[+4(2.45e-06)]_34 chr3L:3106277-3106397 7.72e-03 23_[+4(6.78e-06)]_89 chr2R:13473952-13474072 8.97e-01 120 chr3L:20582493-20582613 3.06e-01 120 chr3R:19074393-19074513 1.54e-03 107_[+1(4.84e-06)]_5 chr2L:18003168-18003288 9.30e-01 120 chr2L:3562500-3562620 4.00e-06 34_[+2(3.70e-07)]_78 chr3R:31963241-31963361 6.15e-01 120 chr2L:18468144-18468264 1.41e-01 120 chr2R:16836488-16836608 6.17e-03 103_[+5(1.05e-05)]_9 chr3L:3338968-3339088 9.50e-01 120 chr3L:18078704-18078824 6.10e-01 120 chr2R:11755341-11755461 1.01e-01 120 chr3R:14673089-14673209 2.51e-01 120 chr2R:9282849-9282969 9.61e-01 120 chr2L:19156592-19156712 7.84e-03 68_[+2(5.80e-05)]_44 chr3R:10466419-10466539 3.44e-01 120 chr2L:8855636-8855756 3.82e-01 120 chr3L:20632488-20632608 9.94e-02 111_[+1(3.62e-05)]_1 chrX:342556-342676 7.87e-01 120 chr3R:19255400-19255520 3.99e-01 120 chr2R:24807854-24807974 2.95e-01 120 chr2L:15386867-15386987 8.20e-01 120 chr2R:21851702-21851822 4.67e-01 120 chr2L:11069622-11069742 7.39e-01 120 chr3R:23878431-23878551 5.64e-01 120 chr2L:8919832-8919952 1.10e-01 120 chrX:11658598-11658718 6.02e-01 120 chrX:8839542-8839662 1.18e-03 109_[+3(2.75e-06)]_3 chr2L:7323090-7323210 2.03e-01 120 chrX:7540906-7541026 3.23e-02 67_[+5(2.53e-06)]_45 chrX:17542896-17543016 3.96e-01 120 chr2L:3582861-3582981 5.50e-01 120 chrX:14134046-14134166 5.02e-03 1_[+5(2.53e-06)]_111 chr3L:13107420-13107540 2.41e-01 120 chrX:6022217-6022337 6.89e-01 120 chr3L:2533130-2533250 2.93e-01 120 chr3L:2386572-2386692 1.87e-01 120 chr3L:776351-776471 7.35e-01 120 chr3L:10928095-10928215 9.41e-01 120 chr3L:20989010-20989130 1.13e-04 17_[+2(8.93e-06)]_95 chr2L:7897373-7897493 7.48e-01 120 chr3L:7264222-7264342 5.48e-01 120 chrX:9468441-9468561 8.41e-04 36_[+1(2.38e-05)]_76 chr2L:18523116-18523236 8.31e-03 35_[+4(2.45e-06)]_77 chr2R:11033710-11033830 4.60e-03 92_[+1(2.89e-05)]_20 chr3R:14389420-14389540 2.12e-01 120 chr3L:11448496-11448616 2.31e-02 64_[+2(5.29e-05)]_48 chr3R:15631027-15631147 3.16e-01 120 chr3R:27205128-27205248 2.70e-01 120 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-------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************