******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17802.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:5150352-5150472 1.0000 120 chr2L:23068897-23069017 1.0000 120 chr2R:5340314-5340434 1.0000 120 chr2R:14932785-14932905 1.0000 120 chr3L:21766072-21766192 1.0000 120 chr3R:13069419-13069539 1.0000 120 chrX:17122121-17122241 1.0000 120 chr4:891281-891401 1.0000 120 chr2R:7874836-7874956 1.0000 120 chr2L:1356861-1356981 1.0000 120 chr3L:24027628-24027748 1.0000 120 chr2R:4551398-4551518 1.0000 120 chr2L:22533091-22533211 1.0000 120 chr4:174844-174964 1.0000 120 chr3L:21217585-21217705 1.0000 120 chr3L:27333378-27333498 1.0000 120 chr2R:4826732-4826852 1.0000 120 chr2R:4309757-4309877 1.0000 120 chr3R:12626131-12626251 1.0000 120 chr3R:567875-567995 1.0000 120 chr2L:23067143-23067263 1.0000 120 chr3R:18232326-18232446 1.0000 120 chr3L:24733658-24733778 1.0000 120 chrX:7269470-7269590 1.0000 120 chr3L:23278295-23278415 1.0000 120 chr2R:5303622-5303742 1.0000 120 chr2R:9103688-9103808 1.0000 120 chr2R:5108614-5108734 1.0000 120 chr4:180011-180131 1.0000 120 chr2R:2118427-2118547 1.0000 120 chr2L:22982962-22983082 1.0000 120 chr2R:2109360-2109480 1.0000 120 chr3L:23354491-23354611 1.0000 120 chr2R:2944955-2945075 1.0000 120 chr2R:18977432-18977552 1.0000 120 chrX:898559-898679 1.0000 120 chr2L:22559701-22559821 1.0000 120 chr2L:22548794-22548914 1.0000 120 chr4:1233469-1233589 1.0000 120 chr3L:24859025-24859145 1.0000 120 chr2R:4188818-4188938 1.0000 120 chr2L:22248369-22248489 1.0000 120 chr2R:4345314-4345434 1.0000 120 chr2L:22130554-22130674 1.0000 120 chr2R:1072732-1072852 1.0000 120 chr3L:23089043-23089163 1.0000 120 chr2L:22292919-22293039 1.0000 120 chrX:22443611-22443731 1.0000 120 chr3L:23698434-23698554 1.0000 120 chr3R:29536136-29536256 1.0000 120 chr2R:4593684-4593804 1.0000 120 chr2R:5341790-5341910 1.0000 120 chr3L:24927039-24927159 1.0000 120 chr3L:22749680-22749800 1.0000 120 chr3R:18230411-18230531 1.0000 120 chr3R:3749637-3749757 1.0000 120 chr3R:30455956-30456076 1.0000 120 chr3L:27174648-27174768 1.0000 120 chr2R:5330329-5330449 1.0000 120 chr3R:4979684-4979804 1.0000 120 chr2R:23908842-23908962 1.0000 120 chr3L:25121630-25121750 1.0000 120 chr2R:13813091-13813211 1.0000 120 chr3R:28818889-28819009 1.0000 120 chr4:401096-401216 1.0000 120 chr3R:3786867-3786987 1.0000 120 chr2R:1530024-1530144 1.0000 120 chr2R:5745625-5745745 1.0000 120 chr3L:27268297-27268417 1.0000 120 chr2R:4173011-4173131 1.0000 120 chr3L:25413004-25413124 1.0000 120 chr3R:31407400-31407520 1.0000 120 chr3L:26013689-26013809 1.0000 120 chr2R:24547002-24547122 1.0000 120 chr2R:5149279-5149399 1.0000 120 chr2R:5304291-5304411 1.0000 120 chr2L:15287138-15287258 1.0000 120 chr3L:24020707-24020827 1.0000 120 chr3R:14390031-14390151 1.0000 120 chr3L:27134350-27134470 1.0000 120 chr3L:24029918-24030038 1.0000 120 chr3L:345543-345663 1.0000 120 chr2R:5360073-5360193 1.0000 120 chr4:941995-942115 1.0000 120 chr2L:17781754-17781874 1.0000 120 chr2R:2947637-2947757 1.0000 120 chr3R:3845869-3845989 1.0000 120 chr3L:27135118-27135238 1.0000 120 chr2R:5068152-5068272 1.0000 120 chr2R:4521239-4521359 1.0000 120 chr3L:23686273-23686393 1.0000 120 chr2R:4286913-4287033 1.0000 120 chr2R:4721623-4721743 1.0000 120 chr3L:25675643-25675763 1.0000 120 chr2R:5251943-5252063 1.0000 120 chr3L:16100164-16100284 1.0000 120 chr2L:12358162-12358282 1.0000 120 chr2R:5145296-5145416 1.0000 120 chrX:7269670-7269790 1.0000 120 chr3L:25960541-25960661 1.0000 120 chr3L:23260070-23260190 1.0000 120 chr4:974667-974787 1.0000 120 chr2R:4517329-4517449 1.0000 120 chr4:209407-209527 1.0000 120 chr2R:4517981-4518101 1.0000 120 chr3L:20406744-20406864 1.0000 120 chr3L:1884423-1884543 1.0000 120 chrX:15982947-15983067 1.0000 120 chr2R:5295428-5295548 1.0000 120 chr2R:2848071-2848191 1.0000 120 chr2R:5123333-5123453 1.0000 120 chr3R:3843055-3843175 1.0000 120 chr2R:4594403-4594523 1.0000 120 chr4:868316-868436 1.0000 120 chr2R:1071345-1071465 1.0000 120 chr3L:23069512-23069632 1.0000 120 chr2R:5352875-5352995 1.0000 120 chr4:1234882-1235002 1.0000 120 chr2R:5398938-5399058 1.0000 120 chr4:943626-943746 1.0000 120 chr3L:28013269-28013389 1.0000 120 chr3L:23589423-23589543 1.0000 120 chr3R:17787957-17788077 1.0000 120 chrX:19712080-19712200 1.0000 120 chr2R:4134953-4135073 1.0000 120 chrX:20638201-20638321 1.0000 120 chr3R:23704746-23704866 1.0000 120 chr3L:23262687-23262807 1.0000 120 chr2R:3581960-3582080 1.0000 120 chr3R:566831-566951 1.0000 120 chr3R:23605618-23605738 1.0000 120 chr2L:18801860-18801980 1.0000 120 chrX:1214630-1214750 1.0000 120 chr2R:2848517-2848637 1.0000 120 chr4:1026506-1026626 1.0000 120 chr3R:2858570-2858690 1.0000 120 chr2R:5143853-5143973 1.0000 120 chr2R:13805279-13805399 1.0000 120 chr4:878921-879041 1.0000 120 chr4:1123340-1123460 1.0000 120 chr3R:3751253-3751373 1.0000 120 chr3L:27085895-27086015 1.0000 120 chr2R:1395472-1395592 1.0000 120 chr3L:9010303-9010423 1.0000 120 chr2L:10231656-10231776 1.0000 120 chr3L:14162205-14162325 1.0000 120 chr2L:15013408-15013528 1.0000 120 chr2R:4547357-4547477 1.0000 120 chr4:1147293-1147413 1.0000 120 chr3R:25187290-25187410 1.0000 120 chr3L:25107907-25108027 1.0000 120 chr4:1148093-1148213 1.0000 120 chr2L:10238864-10238984 1.0000 120 chr4:1156353-1156473 1.0000 120 chr3L:6976086-6976206 1.0000 120 chr3L:23525772-23525892 1.0000 120 chr2R:1071548-1071668 1.0000 120 chr2R:4670772-4670892 1.0000 120 chr2L:22911636-22911756 1.0000 120 chr4:571665-571785 1.0000 120 chr2R:5305395-5305515 1.0000 120 chr3R:3621107-3621227 1.0000 120 chr2R:4701329-4701449 1.0000 120 chrX:21632988-21633108 1.0000 120 chr2R:4134509-4134629 1.0000 120 chr2R:5299234-5299354 1.0000 120 chr3R:2111492-2111612 1.0000 120 chr4:467373-467493 1.0000 120 chr2R:5670519-5670639 1.0000 120 chr2R:5695563-5695683 1.0000 120 chr2R:6267375-6267495 1.0000 120 chr2R:2110282-2110402 1.0000 120 chr4:45601-45721 1.0000 120 chr4:963299-963419 1.0000 120 chr2L:21628654-21628774 1.0000 120 chr2L:5525909-5526029 1.0000 120 chr3L:27860561-27860681 1.0000 120 chr4:1260490-1260610 1.0000 120 chr2L:22257614-22257734 1.0000 120 chr3R:27919125-27919245 1.0000 120 chr3L:24253055-24253175 1.0000 120 chr4:1198756-1198876 1.0000 120 chr2R:1071861-1071981 1.0000 120 chr2R:4014521-4014641 1.0000 120 chrX:22444645-22444765 1.0000 120 chr3L:2882443-2882563 1.0000 120 chr4:1186957-1187077 1.0000 120 chr3R:3587080-3587200 1.0000 120 chr3R:24606937-24607057 1.0000 120 chr3L:23583677-23583797 1.0000 120 chr2L:22578006-22578126 1.0000 120 chr4:207122-207242 1.0000 120 chr3L:23580743-23580863 1.0000 120 chr2R:5664803-5664923 1.0000 120 chr4:180844-180964 1.0000 120 chr2L:22550170-22550290 1.0000 120 chrX:19127297-19127417 1.0000 120 chr3L:11020724-11020844 1.0000 120 chr3L:23250723-23250843 1.0000 120 chr3R:31738371-31738491 1.0000 120 chr2R:5414943-5415063 1.0000 120 chr3R:3734152-3734272 1.0000 120 chr3R:1512954-1513074 1.0000 120 chr2L:20821388-20821508 1.0000 120 chr2L:22758299-22758419 1.0000 120 chr3R:11707099-11707219 1.0000 120 chr3R:3118006-3118126 1.0000 120 chr4:68299-68419 1.0000 120 chr2L:22918945-22919065 1.0000 120 chr2L:5252388-5252508 1.0000 120 chr3L:23249187-23249307 1.0000 120 chr4:1231747-1231867 1.0000 120 chr3L:25108868-25108988 1.0000 120 chr3R:5588863-5588983 1.0000 120 chr2L:181519-181639 1.0000 120 chr2L:20799191-20799311 1.0000 120 chrX:16285106-16285226 1.0000 120 chr4:130686-130806 1.0000 120 chr3L:23555838-23555958 1.0000 120 chr3L:23696399-23696519 1.0000 120 chr3R:3589816-3589936 1.0000 120 chr3L:23248642-23248762 1.0000 120 chr2R:4519640-4519760 1.0000 120 chr2R:5258838-5258958 1.0000 120 chr3L:27264479-27264599 1.0000 120 chr2R:5342555-5342675 1.0000 120 chr2L:23315168-23315288 1.0000 120 chr2R:5981226-5981346 1.0000 120 chr4:801838-801958 1.0000 120 chr3L:22072883-22073003 1.0000 120 chr2R:4471598-4471718 1.0000 120 chr2L:23065318-23065438 1.0000 120 chr2R:5127522-5127642 1.0000 120 chr3L:27086094-27086214 1.0000 120 chr4:867873-867993 1.0000 120 chr4:670428-670548 1.0000 120 chr2R:5013773-5013893 1.0000 120 chr2R:4272534-4272654 1.0000 120 chr3L:23726493-23726613 1.0000 120 chr3L:27105828-27105948 1.0000 120 chr2R:9961044-9961164 1.0000 120 chr2L:23174682-23174802 1.0000 120 chr3R:3849732-3849852 1.0000 120 chrX:1142955-1143075 1.0000 120 chr2R:5259801-5259921 1.0000 120 chr3R:25122808-25122928 1.0000 120 chr4:788491-788611 1.0000 120 chr2R:5417695-5417815 1.0000 120 chr2R:2960243-2960363 1.0000 120 chr3L:23096917-23097037 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG17802/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17802.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.292 C 0.206 G 0.21 T 0.291 Background letter frequencies (from file dataset with add-one prior applied): A 0.292 C 0.206 G 0.21 T 0.291 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GTGTGAAC MEME-1 width = 8 sites = 36 llr = 328 E-value = 3.9e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGAAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::1991 pos.-specific C 1::1::19 probability G 9:a:9::: matrix T :a:9::1: bits 2.3 2.0 * * 1.8 *** * 1.6 *** * * Relative 1.4 ****** * Entropy 1.1 ******** (13.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGAAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGAAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:22550170-22550290 62 1.38e-05 TGTTTCACAA GTGTGAAC AGGCCTTAAA chr4:1148093-1148213 53 1.38e-05 cccgttacta gtgtgaac gcgaactcga chr2L:18801860-18801980 50 1.38e-05 CAGCGAGTGT GTGTGAAC GGGCACCGCC chr3L:16100164-16100284 52 1.38e-05 GCTGTGCACT GTGTGAAC AGTGCTTACG chr2R:5068152-5068272 81 1.38e-05 TCAGCTGGAA GTGTGAAC GAGACATTTT chr3L:24020707-24020827 28 1.38e-05 tcgtgttcat gtgtgaac aACCACTGAC chr3L:22749680-22749800 80 1.38e-05 GCCGCGCTCA GTGTGAAC GTGCCCGCGT chr3L:24859025-24859145 51 1.38e-05 tcgtgttcat gtgtgaac agttgctgat chr3L:23354491-23354611 37 1.38e-05 TGTATGCTAT GTGTGAAC AGACCTGCAC chr2R:2109360-2109480 97 1.38e-05 tactcagctt gtgtgaac gcgaacgcga chr3R:18232326-18232446 56 1.38e-05 GCATCTGTAT GTGTGAAC GGTGCTCCGC chr3L:21217585-21217705 68 1.38e-05 CGCGGTTCGC GTGTGAAC GCCACCAATA chr2R:4551398-4551518 26 1.38e-05 tcgtgttcat gtgtgaac aGGAACTATT chr2R:7874836-7874956 54 1.38e-05 TTCGGGGAAT GTGTGAAC GGAGCTGCGG chr3L:21766072-21766192 24 1.38e-05 TTGTGTCCCA GTGTGAAC GCGGCATTCA chr3L:23696399-23696519 92 2.35e-05 TTTATAAAAA GTGTGACC GTTACGAGGG chr2R:4134953-4135073 23 2.35e-05 ACAAACACAA GTGTGACC GTTACATACT chr2R:2947637-2947757 74 2.35e-05 ACAAATACAA GTGTGACC GTTACATAAC chr2R:5414943-5415063 81 3.32e-05 AATTACGAAA GTGCGAAC ACTTCAACAA chr2R:5745625-5745745 38 3.32e-05 GTAGGTCACA GTGCGAAC AGGGCGCTGG chr4:401096-401216 63 3.32e-05 ACCGGCGCCG GTGCGAAC GCGGCTCCAG chr2R:5417695-5417815 50 7.19e-05 ATATTTAACT GTGTGAAA TGTTTATACT chr2R:4701329-4701449 45 7.19e-05 tacttagcaa gtgtgaaa acgaacgcga chr3R:566831-566951 42 7.19e-05 TGCAACTCTT GTGTAAAC GCCCCTTACT chr2R:4517329-4517449 59 7.19e-05 GCAACAGCAT GTGTAAAC GGGCTCTAAA chrX:7269670-7269790 2 7.19e-05 G GTGTAAAC GAGACTTAAG chr2R:13813091-13813211 60 7.19e-05 CCCTCCACAC GTGTAAAC AGCTTCTTTC chr3R:3749637-3749757 75 7.19e-05 tagtcgaatg gtgtgaaa agatcctgct chr2R:14932785-14932905 22 7.19e-05 GATTTCTTTG GTGTGAAA GGGGCTTAGT chr3R:3621107-3621227 66 8.56e-05 TGGGATTTCC GTGTGATC CTCCTATTTC chr3L:25960541-25960661 66 8.56e-05 AGCAGTACCG GTGTGATC AACACATAAT chr3R:5588863-5588983 51 9.92e-05 AAACAATCAT CTGTGAAC TTAGTTGCGC chr3L:27333378-27333498 45 9.92e-05 ggctttttta ctgtgaac ggtacctgcg chr3L:23262687-23262807 73 1.09e-04 GTTGCTGTGG GTGTGGAC CTATCTGAAT chr3L:25108868-25108988 50 1.36e-04 ATTAGCCATA GTCTGAAC TAGTTATTAT chr2R:23908842-23908962 53 1.36e-04 GCCCCCTGTT GTGTGTAC GCGGCTGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGAAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:22550170-22550290 1.4e-05 61_[+1]_51 chr4:1148093-1148213 1.4e-05 52_[+1]_60 chr2L:18801860-18801980 1.4e-05 49_[+1]_63 chr3L:16100164-16100284 1.4e-05 51_[+1]_61 chr2R:5068152-5068272 1.4e-05 80_[+1]_32 chr3L:24020707-24020827 1.4e-05 27_[+1]_85 chr3L:22749680-22749800 1.4e-05 79_[+1]_33 chr3L:24859025-24859145 1.4e-05 50_[+1]_62 chr3L:23354491-23354611 1.4e-05 36_[+1]_76 chr2R:2109360-2109480 1.4e-05 96_[+1]_16 chr3R:18232326-18232446 1.4e-05 55_[+1]_57 chr3L:21217585-21217705 1.4e-05 67_[+1]_45 chr2R:4551398-4551518 1.4e-05 25_[+1]_87 chr2R:7874836-7874956 1.4e-05 53_[+1]_59 chr3L:21766072-21766192 1.4e-05 23_[+1]_89 chr3L:23696399-23696519 2.3e-05 91_[+1]_21 chr2R:4134953-4135073 2.3e-05 22_[+1]_90 chr2R:2947637-2947757 2.3e-05 73_[+1]_39 chr2R:5414943-5415063 3.3e-05 80_[+1]_32 chr2R:5745625-5745745 3.3e-05 37_[+1]_75 chr4:401096-401216 3.3e-05 62_[+1]_50 chr2R:5417695-5417815 7.2e-05 49_[+1]_63 chr2R:4701329-4701449 7.2e-05 44_[+1]_68 chr3R:566831-566951 7.2e-05 41_[+1]_71 chr2R:4517329-4517449 7.2e-05 58_[+1]_54 chrX:7269670-7269790 7.2e-05 1_[+1]_111 chr2R:13813091-13813211 7.2e-05 59_[+1]_53 chr3R:3749637-3749757 7.2e-05 74_[+1]_38 chr2R:14932785-14932905 7.2e-05 21_[+1]_91 chr3R:3621107-3621227 8.6e-05 65_[+1]_47 chr3L:25960541-25960661 8.6e-05 65_[+1]_47 chr3R:5588863-5588983 9.9e-05 50_[+1]_62 chr3L:27333378-27333498 9.9e-05 44_[+1]_68 chr3L:23262687-23262807 0.00011 72_[+1]_40 chr3L:25108868-25108988 0.00014 49_[+1]_63 chr2R:23908842-23908962 0.00014 52_[+1]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGAAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGAAC width=8 seqs=36 chr2L:22550170-22550290 ( 62) GTGTGAAC 1 chr4:1148093-1148213 ( 53) GTGTGAAC 1 chr2L:18801860-18801980 ( 50) GTGTGAAC 1 chr3L:16100164-16100284 ( 52) GTGTGAAC 1 chr2R:5068152-5068272 ( 81) GTGTGAAC 1 chr3L:24020707-24020827 ( 28) GTGTGAAC 1 chr3L:22749680-22749800 ( 80) GTGTGAAC 1 chr3L:24859025-24859145 ( 51) GTGTGAAC 1 chr3L:23354491-23354611 ( 37) GTGTGAAC 1 chr2R:2109360-2109480 ( 97) GTGTGAAC 1 chr3R:18232326-18232446 ( 56) GTGTGAAC 1 chr3L:21217585-21217705 ( 68) GTGTGAAC 1 chr2R:4551398-4551518 ( 26) GTGTGAAC 1 chr2R:7874836-7874956 ( 54) GTGTGAAC 1 chr3L:21766072-21766192 ( 24) GTGTGAAC 1 chr3L:23696399-23696519 ( 92) GTGTGACC 1 chr2R:4134953-4135073 ( 23) GTGTGACC 1 chr2R:2947637-2947757 ( 74) GTGTGACC 1 chr2R:5414943-5415063 ( 81) GTGCGAAC 1 chr2R:5745625-5745745 ( 38) GTGCGAAC 1 chr4:401096-401216 ( 63) GTGCGAAC 1 chr2R:5417695-5417815 ( 50) GTGTGAAA 1 chr2R:4701329-4701449 ( 45) GTGTGAAA 1 chr3R:566831-566951 ( 42) GTGTAAAC 1 chr2R:4517329-4517449 ( 59) GTGTAAAC 1 chrX:7269670-7269790 ( 2) GTGTAAAC 1 chr2R:13813091-13813211 ( 60) GTGTAAAC 1 chr3R:3749637-3749757 ( 75) GTGTGAAA 1 chr2R:14932785-14932905 ( 22) GTGTGAAA 1 chr3R:3621107-3621227 ( 66) GTGTGATC 1 chr3L:25960541-25960661 ( 66) GTGTGATC 1 chr3R:5588863-5588983 ( 51) CTGTGAAC 1 chr3L:27333378-27333498 ( 45) CTGTGAAC 1 chr3L:23262687-23262807 ( 73) GTGTGGAC 1 chr3L:25108868-25108988 ( 50) GTCTGAAC 1 chr2R:23908842-23908962 ( 53) GTGTGTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGAAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.463 E= 3.9e-009 -1181 -189 217 -1181 -1181 -1181 -1181 178 -1181 -289 221 -1181 -1181 -131 -1181 165 -139 -1181 208 -1181 169 -1181 -292 -339 156 -131 -1181 -239 -139 211 -1181 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGAAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 3.9e-009 0.000000 0.055556 0.944444 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.027778 0.972222 0.000000 0.000000 0.083333 0.000000 0.916667 0.111111 0.000000 0.888889 0.000000 0.944444 0.000000 0.027778 0.027778 0.861111 0.083333 0.000000 0.055556 0.111111 0.888889 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGAAC MEME-1 regular expression -------------------------------------------------------------------------------- GTGTGAAC -------------------------------------------------------------------------------- Time 7.45 secs. ******************************************************************************** ******************************************************************************** MOTIF KTTCACAC MEME-2 width = 8 sites = 47 llr = 396 E-value = 6.8e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif KTTCACAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2:1:8:a: pos.-specific C ::2a2a:a probability G 511::::: matrix T 396::::: bits 2.3 * * * 2.0 * * * 1.8 * *** 1.6 * *** Relative 1.4 * * *** Entropy 1.1 * ***** (12.2 bits) 0.9 * ***** 0.7 * ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTTCACAC consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTCACAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr4:788491-788611 98 1.33e-05 TGTCCGATCC GTTCACAC TGGTAACGTT chr4:963299-963419 61 1.33e-05 taaatttcgc gttcacac tagctgagta chr2L:22911636-22911756 50 1.33e-05 GAAGCCACCt gttcacac atgaacacga chr2L:10238864-10238984 43 1.33e-05 CCTAAGTCCC GTTCACAC AGGCAGCTGC chr2L:12358162-12358282 51 1.33e-05 GTTCGGACCC GTTCACAC ACTGAATGTG chr2R:4721623-4721743 79 1.33e-05 taaatttcgc gttcacac tagctgagtt chr2R:5330329-5330449 81 1.33e-05 TAGAACAATt gttcacac tataaacttg chr3L:24733658-24733778 54 1.33e-05 tcgcgttcgc gttcacac tagctgagta chr3R:12626131-12626251 71 1.33e-05 CCAGGGGACC GTTCACAC CAGACACAGT chr2L:1356861-1356981 74 1.33e-05 TCGCAGTCGC GTTCACAC AAAGCCACAA chr2L:23174682-23174802 15 3.16e-05 TAAATACTCA TTTCACAC TGTTAATTTC chr3L:23589423-23589543 25 3.16e-05 GGTATGTCGT TTTCACAC GGCACACTTC chr2R:4517981-4518101 19 3.16e-05 TGGAAAAAAT TTTCACAC ATATCTTGCA chr2R:13813091-13813211 74 3.16e-05 AAACAGCTTC TTTCACAC ATTTTCAGTT chr2R:4593684-4593804 46 3.16e-05 actgtgcccg tttcacac atttaaattt chr2R:5670519-5670639 75 5.04e-05 aatctgtcac gtccacac ttttgaacca chr3L:23260070-23260190 66 5.04e-05 gtgaagagct gttccCAC TAAGCATCCA chrX:898559-898679 28 5.04e-05 GTTGGGCCCA GTCCACAC ACAAGTGCCG chr4:180844-180964 30 6.88e-05 tctggttcgc attcacac tagctagtaa chr3L:27860561-27860681 63 6.88e-05 ttgctttcgc attcacac cagctaagta chr3L:25107907-25108027 68 6.88e-05 TTAAAATCAG ATTCACAC TTGGCAACTC chr2R:5398938-5399058 48 6.88e-05 AATGGAAACT ATTCACAC TGGCAAAATT chr2L:22130554-22130674 106 6.88e-05 tcgcgtttgt attcacac tagctgg chr2R:4519640-4519760 20 1.04e-04 GTCTGTGATG TTCCACAC ATTTTCTTGC chr2L:22918945-22919065 40 1.04e-04 tgtaatctaa gtgcacac tacatgagtc chr2R:4701329-4701449 13 1.04e-04 ccgatcgagt tttcccac tatcagatac chr3R:25187290-25187410 54 1.04e-04 GACGGGCCCC TTCcacac acactcactc chr4:1026506-1026626 18 1.04e-04 GGATATTCTG GTGCACAC ACATCTATAC chrX:1214630-1214750 25 1.04e-04 TGGAAGACCC TTCCACAC GCGTCGCAGG chr4:209407-209527 58 1.04e-04 ggaaagttta tttcccac gggccccttt chr2R:18977432-18977552 62 1.04e-04 GTCCCTTACT TTCCACAC TTGACATTAG chr3L:23278295-23278415 73 1.04e-04 AATCCAGCAT TTTCCCAC TCTAAATGCC chr2R:2848517-2848637 73 1.11e-04 gagtgcttgt gtccccac ttagtgcctc chr2L:23065318-23065438 64 1.50e-04 gaaatacaca attcccac taaaccaacc chr2L:23315168-23315288 73 1.50e-04 tcacgttcgc attcccac tagctgagta chr3L:23686273-23686393 10 1.50e-04 ttcgacttg atccacac ttgacggccc chr3L:345543-345663 82 1.50e-04 GGGCTTCAGC TTGCACAC ACATCCTCTT chr4:180011-180131 87 1.50e-04 AAAGCAAGTA TTGCACAC ATAATAACCG chr2R:9103688-9103808 39 1.50e-04 CGCTCCAGAC ATTCCCAC CGCAGCACAC chr3L:1884423-1884543 95 1.64e-04 AATCGCGCAA GTACACAC ATGCCTTCGG chr2R:1530024-1530144 111 1.64e-04 TAGAAACAAT GTACACAC AA chr3R:3118006-3118126 61 1.89e-04 cagtcagctg ggtcacac caatgtaaag chrX:21632988-21633108 35 1.89e-04 AATATGTCAC Ttccccac cttttagata chr2R:1071548-1071668 74 1.89e-04 ACATCTGTTA GGTCACAC AGCAGAAGAT chrX:20638201-20638321 51 1.89e-04 TTAGGGGCCT GGTCACAC TAAGCAGTTC chr2R:4345314-4345434 19 1.89e-04 cttgacggct gtgcccac caaacagagg chr2L:18801860-18801980 27 2.21e-04 TTTCCACAGA TTACACAC AAAGGCAGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTCACAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:788491-788611 1.3e-05 97_[+2]_15 chr4:963299-963419 1.3e-05 60_[+2]_52 chr2L:22911636-22911756 1.3e-05 49_[+2]_63 chr2L:10238864-10238984 1.3e-05 42_[+2]_70 chr2L:12358162-12358282 1.3e-05 50_[+2]_62 chr2R:4721623-4721743 1.3e-05 78_[+2]_34 chr2R:5330329-5330449 1.3e-05 80_[+2]_32 chr3L:24733658-24733778 1.3e-05 53_[+2]_59 chr3R:12626131-12626251 1.3e-05 70_[+2]_42 chr2L:1356861-1356981 1.3e-05 73_[+2]_39 chr2L:23174682-23174802 3.2e-05 14_[+2]_98 chr3L:23589423-23589543 3.2e-05 24_[+2]_88 chr2R:4517981-4518101 3.2e-05 18_[+2]_94 chr2R:13813091-13813211 3.2e-05 73_[+2]_39 chr2R:4593684-4593804 3.2e-05 45_[+2]_67 chr2R:5670519-5670639 5e-05 74_[+2]_38 chr3L:23260070-23260190 5e-05 65_[+2]_47 chrX:898559-898679 5e-05 27_[+2]_85 chr4:180844-180964 6.9e-05 29_[+2]_83 chr3L:27860561-27860681 6.9e-05 62_[+2]_50 chr3L:25107907-25108027 6.9e-05 67_[+2]_45 chr2R:5398938-5399058 6.9e-05 47_[+2]_65 chr2L:22130554-22130674 6.9e-05 105_[+2]_7 chr2R:4519640-4519760 0.0001 19_[+2]_93 chr2L:22918945-22919065 0.0001 39_[+2]_73 chr2R:4701329-4701449 0.0001 12_[+2]_100 chr3R:25187290-25187410 0.0001 53_[+2]_59 chr4:1026506-1026626 0.0001 17_[+2]_95 chrX:1214630-1214750 0.0001 24_[+2]_88 chr4:209407-209527 0.0001 57_[+2]_55 chr2R:18977432-18977552 0.0001 61_[+2]_51 chr3L:23278295-23278415 0.0001 72_[+2]_40 chr2R:2848517-2848637 0.00011 72_[+2]_40 chr2L:23065318-23065438 0.00015 63_[+2]_49 chr2L:23315168-23315288 0.00015 72_[+2]_40 chr3L:23686273-23686393 0.00015 9_[+2]_103 chr3L:345543-345663 0.00015 81_[+2]_31 chr4:180011-180131 0.00015 86_[+2]_26 chr2R:9103688-9103808 0.00015 38_[+2]_74 chr3L:1884423-1884543 0.00016 94_[+2]_18 chr2R:1530024-1530144 0.00016 110_[+2]_2 chr3R:3118006-3118126 0.00019 60_[+2]_52 chrX:21632988-21633108 0.00019 34_[+2]_78 chr2R:1071548-1071668 0.00019 73_[+2]_39 chrX:20638201-20638321 0.00019 50_[+2]_62 chr2R:4345314-4345434 0.00019 18_[+2]_94 chr2L:18801860-18801980 0.00022 26_[+2]_86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTCACAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KTTCACAC width=8 seqs=47 chr4:788491-788611 ( 98) GTTCACAC 1 chr4:963299-963419 ( 61) GTTCACAC 1 chr2L:22911636-22911756 ( 50) GTTCACAC 1 chr2L:10238864-10238984 ( 43) GTTCACAC 1 chr2L:12358162-12358282 ( 51) GTTCACAC 1 chr2R:4721623-4721743 ( 79) GTTCACAC 1 chr2R:5330329-5330449 ( 81) GTTCACAC 1 chr3L:24733658-24733778 ( 54) GTTCACAC 1 chr3R:12626131-12626251 ( 71) GTTCACAC 1 chr2L:1356861-1356981 ( 74) GTTCACAC 1 chr2L:23174682-23174802 ( 15) TTTCACAC 1 chr3L:23589423-23589543 ( 25) TTTCACAC 1 chr2R:4517981-4518101 ( 19) TTTCACAC 1 chr2R:13813091-13813211 ( 74) TTTCACAC 1 chr2R:4593684-4593804 ( 46) TTTCACAC 1 chr2R:5670519-5670639 ( 75) GTCCACAC 1 chr3L:23260070-23260190 ( 66) GTTCCCAC 1 chrX:898559-898679 ( 28) GTCCACAC 1 chr4:180844-180964 ( 30) ATTCACAC 1 chr3L:27860561-27860681 ( 63) ATTCACAC 1 chr3L:25107907-25108027 ( 68) ATTCACAC 1 chr2R:5398938-5399058 ( 48) ATTCACAC 1 chr2L:22130554-22130674 ( 106) ATTCACAC 1 chr2R:4519640-4519760 ( 20) TTCCACAC 1 chr2L:22918945-22919065 ( 40) GTGCACAC 1 chr2R:4701329-4701449 ( 13) TTTCCCAC 1 chr3R:25187290-25187410 ( 54) TTCCACAC 1 chr4:1026506-1026626 ( 18) GTGCACAC 1 chrX:1214630-1214750 ( 25) TTCCACAC 1 chr4:209407-209527 ( 58) TTTCCCAC 1 chr2R:18977432-18977552 ( 62) TTCCACAC 1 chr3L:23278295-23278415 ( 73) TTTCCCAC 1 chr2R:2848517-2848637 ( 73) GTCCCCAC 1 chr2L:23065318-23065438 ( 64) ATTCCCAC 1 chr2L:23315168-23315288 ( 73) ATTCCCAC 1 chr3L:23686273-23686393 ( 10) ATCCACAC 1 chr3L:345543-345663 ( 82) TTGCACAC 1 chr4:180011-180131 ( 87) TTGCACAC 1 chr2R:9103688-9103808 ( 39) ATTCCCAC 1 chr3L:1884423-1884543 ( 95) GTACACAC 1 chr2R:1530024-1530144 ( 111) GTACACAC 1 chr3R:3118006-3118126 ( 61) GGTCACAC 1 chrX:21632988-21633108 ( 35) TTCCCCAC 1 chr2R:1071548-1071668 ( 74) GGTCACAC 1 chrX:20638201-20638321 ( 51) GGTCACAC 1 chr2R:4345314-4345434 ( 19) GTGCCCAC 1 chr2L:18801860-18801980 ( 27) TTACACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTCACAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8033 E= 6.8e-007 -61 -1220 115 22 -1220 -1220 -172 168 -219 -11 -98 113 -1220 228 -1220 -1220 143 4 -1220 -1220 -1220 228 -1220 -1220 178 -1220 -1220 -1220 -1220 228 -1220 -1220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTCACAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 6.8e-007 0.191489 0.000000 0.468085 0.340426 0.000000 0.000000 0.063830 0.936170 0.063830 0.191489 0.106383 0.638298 0.000000 1.000000 0.000000 0.000000 0.787234 0.212766 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTCACAC MEME-2 regular expression -------------------------------------------------------------------------------- [GT]TTC[AC]CAC -------------------------------------------------------------------------------- Time 13.66 secs. ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-3 width = 8 sites = 18 llr = 173 E-value = 1.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2a:::a:8 pos.-specific C :::a:::: probability G ::::a::: matrix T 8:a:::a2 bits 2.3 ** 2.0 ** 1.8 ****** 1.6 ****** Relative 1.4 ****** Entropy 1.1 ******** (13.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:27105828-27105948 91 2.65e-05 AATCGACATC TATCGATA ACATATATAG chr4:130686-130806 109 2.65e-05 gttttttaaa tatcgata gaaa chr4:1231747-1231867 108 2.65e-05 CCATCGAAGT TATCGATA GTTCC chr3R:3734152-3734272 42 2.65e-05 CTCCTCATCC TATCGATA GTTTCTGCAG chr3L:27860561-27860681 24 2.65e-05 ttatacccca tatcgata tcccagaaaa chr4:963299-963419 28 2.65e-05 tcccaatatc tatcgata tcccagaaaa chr2R:4701329-4701449 84 2.65e-05 ttttctagga tatcgata gatgttgggg chr4:1148093-1148213 92 2.65e-05 ttttctggga tatcgata aatattgggg chr2R:1395472-1395592 54 2.65e-05 CGTCGATAGT TATCGATA TTGCGAGCTG chr3L:27135118-27135238 17 2.65e-05 GATATGGCAT TATCGATA GGTAACGCGA chr2L:22130554-22130674 67 2.65e-05 tcccattatc tatcgata ttccataaaa chr3L:24733658-24733778 15 2.65e-05 ccccaatatc tatcgata ttccagaaaa chr2R:4272534-4272654 33 7.96e-05 ctcgataaat aatcgata gggggcttac chr3L:23250723-23250843 70 7.96e-05 ACAAAGAATT TATCGATT AATCGAAGTT chr3L:23583677-23583797 34 7.96e-05 tatacagaat tatcgatt gtcggatgcg chr4:571665-571785 59 7.96e-05 AAAAAATCGC TATCGATT GATTTGTAAA chr3L:23686273-23686393 78 7.96e-05 CGCATCCGAC AATCGATA ATTCTGTATA chr3R:18230411-18230531 3 7.96e-05 CC AATCGATA GGTGTCCGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:27105828-27105948 2.7e-05 90_[+3]_22 chr4:130686-130806 2.7e-05 108_[+3]_4 chr4:1231747-1231867 2.7e-05 107_[+3]_5 chr3R:3734152-3734272 2.7e-05 41_[+3]_71 chr3L:27860561-27860681 2.7e-05 23_[+3]_89 chr4:963299-963419 2.7e-05 27_[+3]_85 chr2R:4701329-4701449 2.7e-05 83_[+3]_29 chr4:1148093-1148213 2.7e-05 91_[+3]_21 chr2R:1395472-1395592 2.7e-05 53_[+3]_59 chr3L:27135118-27135238 2.7e-05 16_[+3]_96 chr2L:22130554-22130674 2.7e-05 66_[+3]_46 chr3L:24733658-24733778 2.7e-05 14_[+3]_98 chr2R:4272534-4272654 8e-05 32_[+3]_80 chr3L:23250723-23250843 8e-05 69_[+3]_43 chr3L:23583677-23583797 8e-05 33_[+3]_79 chr4:571665-571785 8e-05 58_[+3]_54 chr3L:23686273-23686393 8e-05 77_[+3]_35 chr3R:18230411-18230531 8e-05 2_[+3]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=18 chr3L:27105828-27105948 ( 91) TATCGATA 1 chr4:130686-130806 ( 109) TATCGATA 1 chr4:1231747-1231867 ( 108) TATCGATA 1 chr3R:3734152-3734272 ( 42) TATCGATA 1 chr3L:27860561-27860681 ( 24) TATCGATA 1 chr4:963299-963419 ( 28) TATCGATA 1 chr2R:4701329-4701449 ( 84) TATCGATA 1 chr4:1148093-1148213 ( 92) TATCGATA 1 chr2R:1395472-1395592 ( 54) TATCGATA 1 chr3L:27135118-27135238 ( 17) TATCGATA 1 chr2L:22130554-22130674 ( 67) TATCGATA 1 chr3L:24733658-24733778 ( 15) TATCGATA 1 chr2R:4272534-4272654 ( 33) AATCGATA 1 chr3L:23250723-23250843 ( 70) TATCGATT 1 chr3L:23583677-23583797 ( 34) TATCGATT 1 chr4:571665-571785 ( 59) TATCGATT 1 chr3L:23686273-23686393 ( 78) AATCGATA 1 chr3R:18230411-18230531 ( 3) AATCGATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7495 E= 1.4e+003 -81 -1081 -1081 152 178 -1081 -1081 -1081 -1081 -1081 -1081 178 -1081 228 -1081 -1081 -1081 -1081 225 -1081 178 -1081 -1081 -1081 -1081 -1081 -1081 178 151 -1081 -1081 -81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.4e+003 0.166667 0.000000 0.000000 0.833333 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.833333 0.000000 0.000000 0.166667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 regular expression -------------------------------------------------------------------------------- TATCGATA -------------------------------------------------------------------------------- Time 19.80 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGGCCKH MEME-4 width = 8 sites = 17 llr = 161 E-value = 3.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGGCCKH MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::4 pos.-specific C ::::aa22 probability G :aaa::41 matrix T a:::::53 bits 2.3 ***** 2.0 ***** 1.8 ****** 1.6 ****** Relative 1.4 ****** Entropy 1.1 ****** (13.7 bits) 0.9 ****** 0.7 ****** 0.5 ******* 0.2 ******* 0.0 -------- Multilevel TGGGCCTA consensus GT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGCCKH MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:25122808-25122928 101 1.67e-05 CTTCTGGCGA TGGGCCGA CTGCTAGAGC chr2R:5259801-5259921 94 1.67e-05 GCCACGAATA TGGGCCTA GAAGACCAAT chr4:1260490-1260610 60 1.67e-05 gcagcgtttt tgggccta ctttatacct chrX:1214630-1214750 88 1.67e-05 TATCGGTGTG TGGGCCGA TGGGCGGCCA chr2L:17781754-17781874 91 1.67e-05 AACTTCTGGC TGGGCCGA AAACTTGGTC chr3L:2882443-2882563 68 2.85e-05 GGGTGTGGAA TGGGCCTC AATACTCAAT chr2R:5305395-5305515 45 2.85e-05 CTTTAACGTG TGGGCCGC TCTAGTGTGG chr3L:23089043-23089163 21 2.85e-05 TAATACATTT TGGGCCGC ATGGCCTCTG chr3L:23583677-23583797 107 4.52e-05 gattttgttg tgggccgt caagtg chr3L:6976086-6976206 15 4.52e-05 TTGGTGTGGC TGGGCCTT CATTTATCAA chr3L:23698434-23698554 24 4.52e-05 AATTGAGAAC TGGGCCTT TCCctggaaa chr3R:567875-567995 48 4.52e-05 ACGGTGTAAA TGGGCCTT ATGTTTCCTT chrX:898559-898679 20 5.21e-05 GTGCAACCGT TGGGCCCA GTCCACACAC chr3R:31407400-31407520 41 5.69e-05 CTGGGTATCC TGGGCCCC GTGCAGACAA chr3L:22749680-22749800 101 7.58e-05 CCCGCGTCTC TGGGCCTG gacgaggacg chr2R:5108614-5108734 90 7.58e-05 cgaaggggtt TGGGCCTG TTCGAAGTAC chr2R:5150352-5150472 52 7.58e-05 CACAAGCAAC TGGGCCCT GTTTACATCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGCCKH MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:25122808-25122928 1.7e-05 100_[+4]_12 chr2R:5259801-5259921 1.7e-05 93_[+4]_19 chr4:1260490-1260610 1.7e-05 59_[+4]_53 chrX:1214630-1214750 1.7e-05 87_[+4]_25 chr2L:17781754-17781874 1.7e-05 90_[+4]_22 chr3L:2882443-2882563 2.9e-05 67_[+4]_45 chr2R:5305395-5305515 2.9e-05 44_[+4]_68 chr3L:23089043-23089163 2.9e-05 20_[+4]_92 chr3L:23583677-23583797 4.5e-05 106_[+4]_6 chr3L:6976086-6976206 4.5e-05 14_[+4]_98 chr3L:23698434-23698554 4.5e-05 23_[+4]_89 chr3R:567875-567995 4.5e-05 47_[+4]_65 chrX:898559-898679 5.2e-05 19_[+4]_93 chr3R:31407400-31407520 5.7e-05 40_[+4]_72 chr3L:22749680-22749800 7.6e-05 100_[+4]_12 chr2R:5108614-5108734 7.6e-05 89_[+4]_23 chr2R:5150352-5150472 7.6e-05 51_[+4]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGCCKH MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGGCCKH width=8 seqs=17 chr3R:25122808-25122928 ( 101) TGGGCCGA 1 chr2R:5259801-5259921 ( 94) TGGGCCTA 1 chr4:1260490-1260610 ( 60) TGGGCCTA 1 chrX:1214630-1214750 ( 88) TGGGCCGA 1 chr2L:17781754-17781874 ( 91) TGGGCCGA 1 chr3L:2882443-2882563 ( 68) TGGGCCTC 1 chr2R:5305395-5305515 ( 45) TGGGCCGC 1 chr3L:23089043-23089163 ( 21) TGGGCCGC 1 chr3L:23583677-23583797 ( 107) TGGGCCGT 1 chr3L:6976086-6976206 ( 15) TGGGCCTT 1 chr3L:23698434-23698554 ( 24) TGGGCCTT 1 chr3R:567875-567995 ( 48) TGGGCCTT 1 chrX:898559-898679 ( 20) TGGGCCCA 1 chr3R:31407400-31407520 ( 41) TGGGCCCC 1 chr3L:22749680-22749800 ( 101) TGGGCCTG 1 chr2R:5108614-5108734 ( 90) TGGGCCTG 1 chr2R:5150352-5150472 ( 52) TGGGCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGCCKH MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4638 E= 3.0e+004 -1073 -1073 -1073 178 -1073 -1073 225 -1073 -1073 -1073 225 -1073 -1073 -1073 225 -1073 -1073 228 -1073 -1073 -1073 228 -1073 -1073 -1073 -22 75 69 27 19 -84 1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGCCKH MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 3.0e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.176471 0.352941 0.470588 0.352941 0.235294 0.117647 0.294118 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGCCKH MEME-4 regular expression -------------------------------------------------------------------------------- TGGGCC[TG][ATC] -------------------------------------------------------------------------------- Time 25.90 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCTGCCC MEME-5 width = 8 sites = 3 llr = 37 E-value = 3.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCTGCCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aaa::aaa probability G ::::a::: matrix T :::a:::: bits 2.3 *** **** 2.0 *** **** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (17.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCTGCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTGCCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23605618-23605738 53 4.67e-06 GCTCTTTAAG CCCTGCCC ACACTAAGAT chr2L:22982962-22983082 89 4.67e-06 AAGCCCGGGG CCCTGCCC AAGCTAAACA chrX:17122121-17122241 45 4.67e-06 TTATGGGGTT CCCTGCCC TCcacacaca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTGCCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23605618-23605738 4.7e-06 52_[+5]_60 chr2L:22982962-22983082 4.7e-06 88_[+5]_24 chrX:17122121-17122241 4.7e-06 44_[+5]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTGCCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCTGCCC width=8 seqs=3 chr3R:23605618-23605738 ( 53) CCCTGCCC 1 chr2L:22982962-22983082 ( 89) CCCTGCCC 1 chrX:17122121-17122241 ( 45) CCCTGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTGCCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 3.2e+004 -823 227 -823 -823 -823 227 -823 -823 -823 227 -823 -823 -823 -823 -823 178 -823 -823 225 -823 -823 227 -823 -823 -823 227 -823 -823 -823 227 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTGCCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.2e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTGCCC MEME-5 regular expression -------------------------------------------------------------------------------- CCCTGCCC -------------------------------------------------------------------------------- Time 31.97 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:5150352-5150472 7.94e-02 51_[+4(7.58e-05)]_61 chr2L:23068897-23069017 1.90e-01 120 chr2R:5340314-5340434 6.75e-01 120 chr2R:14932785-14932905 1.11e-01 21_[+1(7.19e-05)]_91 chr3L:21766072-21766192 1.66e-02 23_[+1(1.38e-05)]_89 chr3R:13069419-13069539 4.44e-01 120 chrX:17122121-17122241 6.61e-03 44_[+5(4.67e-06)]_68 chr4:891281-891401 1.31e-01 120 chr2R:7874836-7874956 7.44e-02 53_[+1(1.38e-05)]_59 chr2L:1356861-1356981 7.74e-03 73_[+2(1.33e-05)]_39 chr3L:24027628-24027748 2.90e-01 120 chr2R:4551398-4551518 8.76e-02 25_[+1(1.38e-05)]_87 chr2L:22533091-22533211 1.90e-01 120 chr4:174844-174964 9.93e-01 120 chr3L:21217585-21217705 3.14e-02 67_[+1(1.38e-05)]_45 chr3L:27333378-27333498 2.82e-01 44_[+1(9.92e-05)]_68 chr2R:4826732-4826852 7.66e-01 120 chr2R:4309757-4309877 2.03e-01 120 chr3R:12626131-12626251 1.57e-02 70_[+2(1.33e-05)]_42 chr3R:567875-567995 1.75e-01 47_[+4(4.52e-05)]_65 chr2L:23067143-23067263 5.25e-01 120 chr3R:18232326-18232446 3.61e-02 55_[+1(1.38e-05)]_57 chr3L:24733658-24733778 3.40e-03 14_[+3(2.65e-05)]_31_[+2(1.33e-05)]_\ 59 chrX:7269470-7269590 3.11e-01 120 chr3L:23278295-23278415 5.04e-02 120 chr2R:5303622-5303742 8.87e-01 120 chr2R:9103688-9103808 1.46e-01 120 chr2R:5108614-5108734 6.65e-02 89_[+4(7.58e-05)]_23 chr4:180011-180131 9.87e-02 120 chr2R:2118427-2118547 1.40e-01 120 chr2L:22982962-22983082 2.11e-02 88_[+5(4.67e-06)]_24 chr2R:2109360-2109480 7.46e-02 96_[+1(1.38e-05)]_16 chr3L:23354491-23354611 3.24e-02 36_[+1(1.38e-05)]_76 chr2R:2944955-2945075 7.90e-02 26_[+5(1.60e-05)]_86 chr2R:18977432-18977552 3.13e-02 120 chrX:898559-898679 3.26e-04 19_[+4(5.21e-05)]_[+2(5.04e-05)]_85 chr2L:22559701-22559821 6.99e-03 120 chr2L:22548794-22548914 8.12e-01 120 chr4:1233469-1233589 8.32e-01 120 chr3L:24859025-24859145 7.77e-02 50_[+1(1.38e-05)]_62 chr2R:4188818-4188938 8.41e-01 120 chr2L:22248369-22248489 7.66e-01 120 chr2R:4345314-4345434 4.01e-03 82_[+5(1.60e-05)]_30 chr2L:22130554-22130674 1.60e-02 66_[+3(2.65e-05)]_31_[+2(6.88e-05)]_\ 7 chr2R:1072732-1072852 3.81e-01 120 chr3L:23089043-23089163 8.61e-03 20_[+4(2.85e-05)]_92 chr2L:22292919-22293039 1.89e-01 120 chrX:22443611-22443731 6.68e-01 120 chr3L:23698434-23698554 5.32e-02 23_[+4(4.52e-05)]_89 chr3R:29536136-29536256 1.72e-02 120 chr2R:4593684-4593804 2.66e-02 45_[+2(3.16e-05)]_67 chr2R:5341790-5341910 8.45e-01 120 chr3L:24927039-24927159 9.32e-01 120 chr3L:22749680-22749800 1.60e-03 79_[+1(1.38e-05)]_13_[+4(7.58e-05)]_\ 12 chr3R:18230411-18230531 8.89e-02 2_[+3(7.96e-05)]_110 chr3R:3749637-3749757 1.12e-01 74_[+1(7.19e-05)]_38 chr3R:30455956-30456076 4.81e-01 120 chr3L:27174648-27174768 3.39e-01 120 chr2R:5330329-5330449 7.27e-03 61_[+2(5.04e-05)]_11_[+2(1.33e-05)]_\ 32 chr3R:4979684-4979804 3.19e-01 120 chr2R:23908842-23908962 4.43e-02 120 chr3L:25121630-25121750 4.15e-01 120 chr2R:13813091-13813211 5.70e-03 59_[+1(7.19e-05)]_6_[+2(3.16e-05)]_\ 39 chr3R:28818889-28819009 4.39e-01 120 chr4:401096-401216 2.41e-02 62_[+1(3.32e-05)]_50 chr3R:3786867-3786987 5.62e-01 120 chr2R:1530024-1530144 5.61e-02 120 chr2R:5745625-5745745 3.23e-02 37_[+1(3.32e-05)]_75 chr3L:27268297-27268417 4.23e-01 120 chr2R:4173011-4173131 7.54e-01 120 chr3L:25413004-25413124 6.94e-02 120 chr3R:31407400-31407520 1.25e-02 40_[+4(5.69e-05)]_72 chr3L:26013689-26013809 3.07e-01 120 chr2R:24547002-24547122 9.75e-01 120 chr2R:5149279-5149399 8.90e-01 120 chr2R:5304291-5304411 3.07e-01 120 chr2L:15287138-15287258 7.99e-02 120 chr3L:24020707-24020827 1.12e-01 27_[+1(1.38e-05)]_85 chr3R:14390031-14390151 5.63e-01 120 chr3L:27134350-27134470 1.19e-01 120 chr3L:24029918-24030038 5.67e-01 120 chr3L:345543-345663 2.24e-01 120 chr2R:5360073-5360193 4.31e-01 120 chr4:941995-942115 5.48e-01 120 chr2L:17781754-17781874 1.19e-02 90_[+4(1.67e-05)]_22 chr2R:2947637-2947757 1.11e-01 35_[+1(9.92e-05)]_30_[+1(2.35e-05)]_\ 39 chr3R:3845869-3845989 3.74e-01 120 chr3L:27135118-27135238 3.19e-02 16_[+3(2.65e-05)]_96 chr2R:5068152-5068272 9.58e-02 80_[+1(1.38e-05)]_32 chr2R:4521239-4521359 8.38e-01 120 chr3L:23686273-23686393 1.03e-04 37_[+5(1.60e-05)]_32_[+3(7.96e-05)]_\ 35 chr2R:4286913-4287033 7.23e-01 120 chr2R:4721623-4721743 4.65e-02 78_[+2(1.33e-05)]_34 chr3L:25675643-25675763 5.67e-01 120 chr2R:5251943-5252063 8.28e-01 120 chr3L:16100164-16100284 4.76e-02 51_[+1(1.38e-05)]_61 chr2L:12358162-12358282 5.04e-03 50_[+2(1.33e-05)]_62 chr2R:5145296-5145416 6.22e-01 120 chrX:7269670-7269790 1.07e-01 1_[+1(7.19e-05)]_111 chr3L:25960541-25960661 4.72e-02 65_[+1(8.56e-05)]_47 chr3L:23260070-23260190 1.75e-01 65_[+2(5.04e-05)]_47 chr4:974667-974787 2.44e-01 120 chr2R:4517329-4517449 1.28e-01 58_[+1(7.19e-05)]_54 chr4:209407-209527 4.30e-02 120 chr2R:4517981-4518101 5.64e-02 18_[+2(3.16e-05)]_94 chr3L:20406744-20406864 1.95e-01 120 chr3L:1884423-1884543 2.40e-01 120 chrX:15982947-15983067 5.11e-01 120 chr2R:5295428-5295548 9.19e-02 120 chr2R:2848071-2848191 3.45e-01 120 chr2R:5123333-5123453 4.18e-01 120 chr3R:3843055-3843175 8.20e-02 120 chr2R:4594403-4594523 7.50e-01 120 chr4:868316-868436 5.33e-01 120 chr2R:1071345-1071465 7.71e-01 120 chr3L:23069512-23069632 4.07e-02 120 chr2R:5352875-5352995 3.53e-01 120 chr4:1234882-1235002 7.66e-01 120 chr2R:5398938-5399058 3.12e-01 47_[+2(6.88e-05)]_65 chr4:943626-943746 8.24e-01 120 chr3L:28013269-28013389 7.14e-01 120 chr3L:23589423-23589543 6.13e-02 24_[+2(3.16e-05)]_88 chr3R:17787957-17788077 6.69e-01 120 chrX:19712080-19712200 4.94e-01 120 chr2R:4134953-4135073 1.40e-01 22_[+1(2.35e-05)]_90 chrX:20638201-20638321 1.39e-01 120 chr3R:23704746-23704866 1.43e-01 120 chr3L:23262687-23262807 1.09e-01 120 chr2R:3581960-3582080 5.76e-01 120 chr3R:566831-566951 3.13e-01 41_[+1(7.19e-05)]_71 chr3R:23605618-23605738 4.50e-03 52_[+5(4.67e-06)]_60 chr2L:18801860-18801980 1.21e-03 49_[+1(1.38e-05)]_63 chrX:1214630-1214750 1.14e-03 87_[+4(1.67e-05)]_25 chr2R:2848517-2848637 1.48e-01 120 chr4:1026506-1026626 2.27e-01 120 chr3R:2858570-2858690 2.59e-01 120 chr2R:5143853-5143973 9.10e-01 120 chr2R:13805279-13805399 6.99e-01 120 chr4:878921-879041 8.73e-01 120 chr4:1123340-1123460 8.03e-01 120 chr3R:3751253-3751373 3.47e-01 120 chr3L:27085895-27086015 8.40e-01 120 chr2R:1395472-1395592 4.54e-02 53_[+3(2.65e-05)]_59 chr3L:9010303-9010423 4.94e-01 120 chr2L:10231656-10231776 8.07e-01 120 chr3L:14162205-14162325 8.89e-02 120 chr2L:15013408-15013528 2.73e-01 120 chr2R:4547357-4547477 6.98e-01 120 chr4:1147293-1147413 4.04e-01 120 chr3R:25187290-25187410 2.44e-02 120 chr3L:25107907-25108027 3.84e-01 67_[+2(6.88e-05)]_45 chr4:1148093-1148213 5.47e-03 52_[+1(1.38e-05)]_31_[+3(2.65e-05)]_\ 21 chr2L:10238864-10238984 1.21e-01 42_[+2(1.33e-05)]_70 chr4:1156353-1156473 4.16e-01 120 chr3L:6976086-6976206 1.43e-02 14_[+4(4.52e-05)]_98 chr3L:23525772-23525892 6.09e-01 120 chr2R:1071548-1071668 2.66e-01 120 chr2R:4670772-4670892 1.81e-01 120 chr2L:22911636-22911756 4.36e-02 49_[+2(1.33e-05)]_63 chr4:571665-571785 1.85e-02 58_[+3(7.96e-05)]_54 chr2R:5305395-5305515 1.50e-02 44_[+4(2.85e-05)]_68 chr3R:3621107-3621227 2.37e-02 65_[+1(8.56e-05)]_47 chr2R:4701329-4701449 7.57e-04 44_[+1(7.19e-05)]_31_[+3(2.65e-05)]_\ 29 chrX:21632988-21633108 1.24e-01 120 chr2R:4134509-4134629 3.82e-01 120 chr2R:5299234-5299354 3.82e-01 120 chr3R:2111492-2111612 6.99e-01 120 chr4:467373-467493 8.31e-01 120 chr2R:5670519-5670639 1.86e-01 74_[+2(5.04e-05)]_38 chr2R:5695563-5695683 8.93e-01 120 chr2R:6267375-6267495 9.26e-01 120 chr2R:2110282-2110402 7.83e-01 120 chr4:45601-45721 8.06e-01 120 chr4:963299-963419 3.44e-03 27_[+3(2.65e-05)]_25_[+2(1.33e-05)]_\ 52 chr2L:21628654-21628774 5.36e-01 120 chr2L:5525909-5526029 9.05e-01 120 chr3L:27860561-27860681 1.82e-02 23_[+3(2.65e-05)]_31_[+2(6.88e-05)]_\ 50 chr4:1260490-1260610 4.39e-02 59_[+4(1.67e-05)]_53 chr2L:22257614-22257734 6.04e-01 120 chr3R:27919125-27919245 2.43e-01 120 chr3L:24253055-24253175 9.41e-01 120 chr4:1198756-1198876 1.81e-01 120 chr2R:1071861-1071981 9.47e-01 120 chr2R:4014521-4014641 5.80e-01 120 chrX:22444645-22444765 2.54e-01 120 chr3L:2882443-2882563 1.26e-02 67_[+4(2.85e-05)]_45 chr4:1186957-1187077 3.62e-01 120 chr3R:3587080-3587200 9.19e-01 120 chr3R:24606937-24607057 2.47e-02 120 chr3L:23583677-23583797 1.24e-02 33_[+3(7.96e-05)]_65_[+4(4.52e-05)]_\ 6 chr2L:22578006-22578126 6.97e-01 120 chr4:207122-207242 9.56e-01 120 chr3L:23580743-23580863 8.81e-01 120 chr2R:5664803-5664923 9.47e-01 120 chr4:180844-180964 1.32e-01 29_[+2(6.88e-05)]_83 chr2L:22550170-22550290 4.11e-02 61_[+1(1.38e-05)]_51 chrX:19127297-19127417 3.23e-01 120 chr3L:11020724-11020844 6.98e-01 120 chr3L:23250723-23250843 1.49e-01 69_[+3(7.96e-05)]_43 chr3R:31738371-31738491 6.57e-01 120 chr2R:5414943-5415063 8.63e-02 80_[+1(3.32e-05)]_32 chr3R:3734152-3734272 1.25e-01 41_[+3(2.65e-05)]_71 chr3R:1512954-1513074 4.69e-01 120 chr2L:20821388-20821508 4.98e-01 120 chr2L:22758299-22758419 4.47e-01 120 chr3R:11707099-11707219 1.56e-01 120 chr3R:3118006-3118126 7.50e-02 120 chr4:68299-68419 7.44e-01 120 chr2L:22918945-22919065 6.95e-02 120 chr2L:5252388-5252508 2.00e-01 120 chr3L:23249187-23249307 7.35e-01 120 chr4:1231747-1231867 9.38e-02 107_[+3(2.65e-05)]_5 chr3L:25108868-25108988 2.51e-02 120 chr3R:5588863-5588983 1.57e-01 50_[+1(9.92e-05)]_62 chr2L:181519-181639 5.51e-01 120 chr2L:20799191-20799311 3.14e-01 120 chrX:16285106-16285226 4.07e-02 120 chr4:130686-130806 2.34e-02 108_[+3(2.65e-05)]_4 chr3L:23555838-23555958 3.32e-01 120 chr3L:23696399-23696519 2.03e-01 91_[+1(2.35e-05)]_21 chr3R:3589816-3589936 3.61e-01 120 chr3L:23248642-23248762 4.77e-01 120 chr2R:4519640-4519760 3.90e-01 120 chr2R:5258838-5258958 9.98e-01 120 chr3L:27264479-27264599 1.70e-01 120 chr2R:5342555-5342675 5.50e-01 120 chr2L:23315168-23315288 4.33e-01 120 chr2R:5981226-5981346 7.44e-01 120 chr4:801838-801958 1.25e-01 120 chr3L:22072883-22073003 3.79e-01 120 chr2R:4471598-4471718 8.01e-02 120 chr2L:23065318-23065438 3.10e-01 120 chr2R:5127522-5127642 1.25e-01 120 chr3L:27086094-27086214 5.22e-01 120 chr4:867873-867993 2.97e-01 120 chr4:670428-670548 2.62e-01 120 chr2R:5013773-5013893 6.38e-01 120 chr2R:4272534-4272654 1.10e-02 32_[+3(7.96e-05)]_80 chr3L:23726493-23726613 7.89e-01 120 chr3L:27105828-27105948 3.56e-02 90_[+3(2.65e-05)]_22 chr2R:9961044-9961164 8.68e-01 120 chr2L:23174682-23174802 5.03e-02 14_[+2(3.16e-05)]_98 chr3R:3849732-3849852 5.90e-01 120 chrX:1142955-1143075 2.21e-01 120 chr2R:5259801-5259921 1.26e-01 93_[+4(1.67e-05)]_19 chr3R:25122808-25122928 4.13e-02 100_[+4(1.67e-05)]_12 chr4:788491-788611 2.09e-02 97_[+2(1.33e-05)]_15 chr2R:5417695-5417815 3.03e-01 49_[+1(7.19e-05)]_63 chr2R:2960243-2960363 3.43e-01 120 chr3L:23096917-23097037 9.43e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************