******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17801.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:16144335-16144455 1.0000 120 chrX:13285140-13285260 1.0000 120 chr3R:13722613-13722733 1.0000 120 chr2R:23797865-23797985 1.0000 120 chr2L:12271405-12271525 1.0000 120 chr3L:3768761-3768881 1.0000 120 chr3L:18766632-18766752 1.0000 120 chr2L:19472394-19472514 1.0000 120 chrX:10125788-10125908 1.0000 120 chr3L:21097534-21097654 1.0000 120 chrX:12757219-12757339 1.0000 120 chrX:11658320-11658440 1.0000 120 chrX:13817890-13818010 1.0000 120 chr3R:21581354-21581474 1.0000 120 chrX:11524023-11524143 1.0000 120 chr2L:16539120-16539240 1.0000 120 chr2R:10549974-10550094 1.0000 120 chr2R:11630353-11630473 1.0000 120 chrX:7317943-7318063 1.0000 120 chr2R:13550411-13550531 1.0000 120 chr2L:414252-414372 1.0000 120 chrX:11503795-11503915 1.0000 120 chr3L:9107070-9107190 1.0000 120 chr2L:9547458-9547578 1.0000 120 chr3R:13066765-13066885 1.0000 120 chrX:10727453-10727573 1.0000 120 chr3L:10749783-10749903 1.0000 120 chrX:12498224-12498344 1.0000 120 chrX:8170561-8170681 1.0000 120 chrX:3446791-3446911 1.0000 120 chr2L:8603941-8604061 1.0000 120 chr3R:22816570-22816690 1.0000 120 chr3L:83063-83183 1.0000 120 chrX:1271172-1271292 1.0000 120 chrX:3667333-3667453 1.0000 120 chrX:14501151-14501271 1.0000 120 chrX:10106888-10107008 1.0000 120 chrX:15546635-15546755 1.0000 120 chr3R:19158137-19158257 1.0000 120 chrX:11083150-11083270 1.0000 120 chr3R:24101578-24101698 1.0000 120 chr2R:18327209-18327329 1.0000 120 chrX:4813871-4813991 1.0000 120 chr2R:16163792-16163912 1.0000 120 chr3L:11547698-11547818 1.0000 120 chr3R:15293103-15293223 1.0000 120 chrX:17625920-17626040 1.0000 120 chr3L:17967770-17967890 1.0000 120 chrX:15619921-15620041 1.0000 120 chrX:12964723-12964843 1.0000 120 chrX:11373399-11373519 1.0000 120 chr2L:7492599-7492719 1.0000 120 chrX:15303749-15303869 1.0000 120 chr3R:22550224-22550344 1.0000 120 chr2L:11963569-11963689 1.0000 120 chrX:19165395-19165515 1.0000 120 chr3L:22826431-22826551 1.0000 120 chr3L:12834735-12834855 1.0000 120 chr2R:17396027-17396147 1.0000 120 chr3R:9222531-9222651 1.0000 120 chrX:7980975-7981095 1.0000 120 chr2R:24959665-24959785 1.0000 120 chr2L:9692525-9692645 1.0000 120 chr3L:3539416-3539536 1.0000 120 chrX:8231740-8231860 1.0000 120 chr3R:26248259-26248379 1.0000 120 chr3L:6845335-6845455 1.0000 120 chr2L:5463182-5463302 1.0000 120 chr3R:23333121-23333241 1.0000 120 chr3L:19334710-19334830 1.0000 120 chr3L:2805310-2805430 1.0000 120 chr3L:564095-564215 1.0000 120 chr2L:13399702-13399822 1.0000 120 chr3L:18783601-18783721 1.0000 120 chrX:7562736-7562856 1.0000 120 chr3R:22543151-22543271 1.0000 120 chr3R:15474548-15474668 1.0000 120 chr2R:18317400-18317520 1.0000 120 chrX:15077883-15078003 1.0000 120 chrX:11156300-11156420 1.0000 120 chr3L:20113015-20113135 1.0000 120 chrX:11817225-11817345 1.0000 120 chr2R:11654077-11654197 1.0000 120 chr2L:16641024-16641144 1.0000 120 chrX:16718413-16718533 1.0000 120 chrX:11680533-11680653 1.0000 120 chrX:10547729-10547849 1.0000 120 chr3R:30751008-30751128 1.0000 120 chr2L:14614565-14614685 1.0000 120 chr2L:9487588-9487708 1.0000 120 chrX:1835148-1835268 1.0000 120 chr2L:10802387-10802507 1.0000 120 chr3R:23787147-23787267 1.0000 120 chrX:10723964-10724084 1.0000 120 chr3L:16709789-16709909 1.0000 120 chr2L:13411737-13411857 1.0000 120 chrX:13972530-13972650 1.0000 120 chrX:22839754-22839874 1.0000 120 chrX:9578933-9579053 1.0000 120 chr3R:17631298-17631418 1.0000 120 chrX:13235113-13235233 1.0000 120 chr3R:22057938-22058058 1.0000 120 chr3L:2275132-2275252 1.0000 120 chrX:13277936-13278056 1.0000 120 chr3L:22830403-22830523 1.0000 120 chrX:7873472-7873592 1.0000 120 chr2L:7579165-7579285 1.0000 120 chr3R:11456693-11456813 1.0000 120 chrX:12511407-12511527 1.0000 120 chr2R:4271827-4271947 1.0000 120 chr2R:21026341-21026461 1.0000 120 chr3R:9593508-9593628 1.0000 120 chr2R:19126080-19126200 1.0000 120 chr3R:7076715-7076835 1.0000 120 chr3R:20328372-20328492 1.0000 120 chr2R:10778094-10778214 1.0000 120 chr3L:9497398-9497518 1.0000 120 chrX:13964962-13965082 1.0000 120 chrX:510696-510816 1.0000 120 chr3R:19792489-19792609 1.0000 120 chr3L:5172586-5172706 1.0000 120 chr3R:25882704-25882824 1.0000 120 chr2R:7256260-7256380 1.0000 120 chr3R:14736885-14737005 1.0000 120 chr2R:22809316-22809436 1.0000 120 chrX:2075980-2076100 1.0000 120 chrX:8259993-8260113 1.0000 120 chrX:10556360-10556480 1.0000 120 chrX:13735032-13735152 1.0000 120 chr3R:24846584-24846704 1.0000 120 chr2R:19455671-19455791 1.0000 120 chr3R:16277171-16277291 1.0000 120 chr2R:11180830-11180950 1.0000 120 chrX:5428510-5428630 1.0000 120 chrX:15308685-15308805 1.0000 120 chrX:3389964-3390084 1.0000 120 chr3R:25518456-25518576 1.0000 120 chr3L:2817964-2818084 1.0000 120 chr3L:11125976-11126096 1.0000 120 chrX:6641735-6641855 1.0000 120 chrX:3772863-3772983 1.0000 120 chr3R:17807334-17807454 1.0000 120 chr3R:17793448-17793568 1.0000 120 chrX:3361794-3361914 1.0000 120 chr3L:11220488-11220608 1.0000 120 chr2L:16537155-16537275 1.0000 120 chrX:7710588-7710708 1.0000 120 chr3R:22097006-22097126 1.0000 120 chrX:17588235-17588355 1.0000 120 chr2L:2131601-2131721 1.0000 120 chr2R:22586932-22587052 1.0000 120 chr2L:8203865-8203985 1.0000 120 chr2R:21250432-21250552 1.0000 120 chr3L:3050329-3050449 1.0000 120 chr2R:23429169-23429289 1.0000 120 chr2R:9184543-9184663 1.0000 120 chrX:13838381-13838501 1.0000 120 chrX:17694355-17694475 1.0000 120 chr3L:515761-515881 1.0000 120 chrX:4590625-4590745 1.0000 120 chr2L:7557496-7557616 1.0000 120 chrX:8060457-8060577 1.0000 120 chrX:19148100-19148220 1.0000 120 chr2R:13014480-13014600 1.0000 120 chr3L:8869447-8869567 1.0000 120 chr2L:4915742-4915862 1.0000 120 chr3L:8775489-8775609 1.0000 120 chr2L:3059308-3059428 1.0000 120 chr3R:24079259-24079379 1.0000 120 chrX:8521589-8521709 1.0000 120 chr3R:16154381-16154501 1.0000 120 chrX:13747799-13747919 1.0000 120 chrX:12750353-12750473 1.0000 120 chr3L:19906284-19906404 1.0000 120 chr3R:30526688-30526808 1.0000 120 chr3R:29139278-29139398 1.0000 120 chr2R:10045498-10045618 1.0000 120 chr3L:13282171-13282291 1.0000 120 chr3R:10311530-10311650 1.0000 120 chrX:4658040-4658160 1.0000 120 chr2L:11211529-11211649 1.0000 120 chrX:9163259-9163379 1.0000 120 chrX:4151104-4151224 1.0000 120 chr2R:19164051-19164171 1.0000 120 chrX:20657135-20657255 1.0000 120 chrX:11485194-11485314 1.0000 120 chrX:12905172-12905292 1.0000 120 chrX:8231941-8232061 1.0000 120 chrX:8258217-8258337 1.0000 120 chrX:5916240-5916360 1.0000 120 chr2L:18153202-18153322 1.0000 120 chrX:13746989-13747109 1.0000 120 chr3R:8893184-8893304 1.0000 120 chr2L:16538285-16538405 1.0000 120 chr3R:5694593-5694713 1.0000 120 chr3L:8076335-8076455 1.0000 120 chrX:14914038-14914158 1.0000 120 chr2R:17457975-17458095 1.0000 120 chrX:13243600-13243720 1.0000 120 chr3R:19167543-19167663 1.0000 120 chr3R:22635744-22635864 1.0000 120 chr2R:14128699-14128819 1.0000 120 chrX:2196243-2196363 1.0000 120 chrX:4616067-4616187 1.0000 120 chr2R:17580707-17580827 1.0000 120 chr3R:22046627-22046747 1.0000 120 chr2R:18314828-18314948 1.0000 120 chrX:16780319-16780439 1.0000 120 chr2R:11098358-11098478 1.0000 120 chr3R:24575898-24576018 1.0000 120 chr3L:2423733-2423853 1.0000 120 chr3L:21202972-21203092 1.0000 120 chr2L:6012542-6012662 1.0000 120 chrX:10087817-10087937 1.0000 120 chr2L:22148894-22149014 1.0000 120 chr2R:7989122-7989242 1.0000 120 chrX:13754761-13754881 1.0000 120 chrX:13396078-13396198 1.0000 120 chrX:8410537-8410657 1.0000 120 chr3L:19044923-19045043 1.0000 120 chr3L:10678079-10678199 1.0000 120 chr3R:29935868-29935988 1.0000 120 chr3R:9933571-9933691 1.0000 120 chr3L:881064-881184 1.0000 120 chr3R:5019102-5019222 1.0000 120 chr3L:13924080-13924200 1.0000 120 chrX:2742217-2742337 1.0000 120 chr3L:12118195-12118315 1.0000 120 chr3R:29223075-29223195 1.0000 120 chr3R:17706584-17706704 1.0000 120 chr3L:2553149-2553269 1.0000 120 chr3R:21586147-21586267 1.0000 120 chr3L:12075100-12075220 1.0000 120 chr3L:8775699-8775819 1.0000 120 chr3R:20274675-20274795 1.0000 120 chr3R:14902113-14902233 1.0000 120 chr3R:25735824-25735944 1.0000 120 chr3R:24272327-24272447 1.0000 120 chrX:18479851-18479971 1.0000 120 chrX:13779851-13779971 1.0000 120 chr2R:11384139-11384259 1.0000 120 chrX:13840228-13840348 1.0000 120 chr2R:16179299-16179419 1.0000 120 chr2L:16040329-16040449 1.0000 120 chr3R:9783358-9783478 1.0000 120 chr3L:9361928-9362048 1.0000 120 chr3R:26117454-26117574 1.0000 120 chr2R:20270938-20271058 1.0000 120 chr3L:2805513-2805633 1.0000 120 chr3R:5520718-5520838 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG17801/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17801.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.32 C 0.176 G 0.173 T 0.331 Background letter frequencies (from file dataset with add-one prior applied): A 0.32 C 0.176 G 0.173 T 0.331 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTTKTTT MEME-1 width = 8 sites = 119 llr = 822 E-value = 6.0e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTKTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C :::2:3:: probability G ::1:6::2 matrix T aa9847a8 bits 2.5 2.3 2.0 1.8 Relative 1.5 ** * Entropy 1.3 *** * (10.0 bits) 1.0 ***** ** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTTTGTTT consensus TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTKTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13779851-13779971 113 7.53e-05 ATTTTCTTTT TTTTGTTT chr3L:2553149-2553269 103 7.53e-05 Cttgctttcg ttttgttt tgttttgtta chr3L:12118195-12118315 88 7.53e-05 TCTAGGCACA TTTTGTTT ATACTTTTCG chr3L:881064-881184 100 7.53e-05 GTTATTGAGT TTTTGTTT TCGTTTAGTT chrX:13754761-13754881 78 7.53e-05 CCTAAGTGCT TTTTGTTT TGTCTCTCCG chr3R:22635744-22635864 16 7.53e-05 CTTGCAATTT TTTTGTTT GTGTTTTTGT chr3R:30526688-30526808 21 7.53e-05 AATGATCtgg ttttgttt tggtttttgg chr3R:24079259-24079379 105 7.53e-05 GAAAATACAT TTTTGTTT TAAATTCA chr3L:8775489-8775609 51 7.53e-05 TATTCTTGGC TTTTGTTT TCCCTTTGTT chrX:8060457-8060577 37 7.53e-05 TATATTTTGC TTTTGTTT TTTCTCATTT chr3R:25518456-25518576 41 7.53e-05 TCGAAGACAT TTTTGTTT CTTTTGTCGA chr3R:24846584-24846704 111 7.53e-05 ttttttttgt ttttgttt tt chrX:10556360-10556480 36 7.53e-05 TTTTCATTTG TTTTGTTT CTTTTACGCT chr3L:5172586-5172706 43 7.53e-05 TTTTTGTATT TTTTGTTT ACATTTTTTT chr2R:19126080-19126200 22 7.53e-05 ttgtttcggc ttttgttt tgatttcttt chr2R:21026341-21026461 84 7.53e-05 TACTCATGTT TTTTGTTT TGGCTCTTTT chrX:13235113-13235233 67 7.53e-05 atttttattt ttttgttt CCGTCTTTGT chrX:10723964-10724084 92 7.53e-05 TGCAATTTCA TTTTGTTT TGTAAATAAA chr3R:22543151-22543271 45 7.53e-05 GAACTTGAAT TTTTGTTT GTAAAATAAA chrX:7980975-7981095 53 7.53e-05 tttttccttt ttttgttt tttcttcttG chr2R:17396027-17396147 49 7.53e-05 TTTTCTCTGT TTTTGTTT AGACTTTGCT chrX:15303749-15303869 21 7.53e-05 TTGAATTTAT TTTTGTTT TATTCTTTTT chr3L:17967770-17967890 63 7.53e-05 ttttgtgttt ttttgttt ttttagtttt chr3R:15293103-15293223 14 7.53e-05 TCTTTTTTGT TTTTGTTT CTGGTGTTTT chr3R:22816570-22816690 53 7.53e-05 ATTAAGTAAG TTTTGTTT TGAGTGCATA chrX:12498224-12498344 20 7.53e-05 gttgttcttg ttttgttt ttcttcttct chr3L:10749783-10749903 112 7.53e-05 TTTTTTACAA ttttgttt t chr3R:13066765-13066885 2 7.53e-05 C TTTTGTTT CATTTTACAC chrX:13817890-13818010 67 7.53e-05 tttttgttct ttttgttt ctatGGGTTG chr3R:13722613-13722733 56 7.53e-05 GATTCGACGT TTTTGTTT TTTGTTGTTG chr3L:19044923-19045043 96 1.15e-04 AATTTTTTCT TTTTGCTT TGCGACGACG chrX:4616067-4616187 105 1.15e-04 TTTTTTCTGC TTTTGCTT GCGTTGTA chr3L:8869447-8869567 108 1.15e-04 TCTGCACTTA TTTTGCTT GGCCT chr2L:2131601-2131721 6 1.15e-04 AGCAG TTTTGCTT TTATCCCAAG chr3R:20328372-20328492 113 1.15e-04 TCAGAACTTG TTTTGCTT chr3R:26248259-26248379 65 1.15e-04 CTAAGACAAA TTTTGCTT TACAAGTAAG chr3R:22550224-22550344 89 1.15e-04 CTGTTAGCAG TTTTGCTT TCTTTTCTCG chrX:4813871-4813991 65 1.15e-04 GTTattttcc ttttgctt ggcatttcat chr3L:83063-83183 51 1.15e-04 tgtcttattg ttttgctt tttcttACAG chrX:13285140-13285260 67 1.15e-04 TTTTACCTTC TTTTGCTT TTCTCTTTCG chr3R:22046627-22046747 81 1.55e-04 TGACATAAAT TTTTGTTG TTATTTTGAC chr2L:16538285-16538405 60 1.55e-04 gtgttgtatt ttttgttg ttCGACGAGC chrX:11485194-11485314 70 1.55e-04 CGATTGACAA TTTTGTTG TCGCGTTGTC chr2R:13014480-13014600 102 1.55e-04 AGTGCCGGGC TTTTGTTG CTCGTTGCCG chrX:10547729-10547849 18 1.55e-04 TTTTTATTGC TTTTGTTG CCTTTGTTGG chr3L:22826431-22826551 60 1.55e-04 ATTTTGTATT TTTTGTTG GTTATTTACT chr2L:19472394-19472514 94 1.55e-04 TCATTCCATT TTTTGTTG CACTGTCTTA chr3L:18766632-18766752 33 1.55e-04 GATTTTTGGG TTTTGTTG CCACTGCAGC chr3L:3768761-3768881 13 1.55e-04 CAACAAAAAG TTTTGTTG CACATGGCAA chr3R:24575898-24576018 76 3.39e-04 CCTTAGCTCG TTTTTTTT TTTTTGCTGA chrX:19148100-19148220 3 3.39e-04 tt tttttttt ttgttctctt chrX:3361794-3361914 87 3.39e-04 ttttatttcg tttttttt tatcttattt chr3R:19792489-19792609 56 3.39e-04 AGTGGAATAT TTTTTTTT AAATGTTAAA chr2L:7579165-7579285 91 3.39e-04 CAAACAATGt tttttttt ttatatattt chr3R:23787147-23787267 20 3.39e-04 attatttctc tttttttt CCATGCTGTC chr2L:9487588-9487708 111 3.39e-04 TAAATTATTA TTTTTTTT AT chrX:8231740-8231860 101 3.39e-04 TTTTTTGTTA TTTTTTTT ACCGTGAAGG chr3L:12834735-12834855 3 3.39e-04 TA TTTTTTTT TCTACGAGCA chrX:19165395-19165515 82 3.39e-04 CTGTTGCTTC TTTTTTTT GCAGACTTTG chr2L:11963569-11963689 87 3.39e-04 TTTGTACATT TTTTTTTT CTTTTCAACT chrX:12964723-12964843 43 3.39e-04 TATATCTATT TTTTTTTT CTTTCTGTTG chr3R:24101578-24101698 11 3.39e-04 GGGtgttttt tttttttt tttgcagttg chrX:3667333-3667453 93 3.39e-04 ATATTACATA TTTTTTTT ATATTTTCCC chr2L:8603941-8604061 6 3.39e-04 TTTTT TTTTTTTT CGTACTTTGC chrX:3446791-3446911 89 3.39e-04 TTTTCTTCTT TTTTTTTT GCACTCTTTT chrX:10727453-10727573 53 3.39e-04 aaatGCAATT TTTTTTTT TGCTGAAAGC chr2L:414252-414372 11 3.39e-04 ttgctttccg tttcgttt tattttctgt chr2R:11630353-11630473 63 3.39e-04 GCTATTTTCT TTTTTTTT TATATCGCTT chr3L:16144335-16144455 16 3.39e-04 TTCTTCAAAG TTTTTTTT GCATTACTTT chr3R:5019102-5019222 64 3.60e-04 TGTGCAAAAA TTTTGCTG CGTCGTTGTT chrX:12750353-12750473 30 3.60e-04 TCGTCTGAGA TTTTGCTG CCAATTTTTC chr3R:16154381-16154501 40 3.60e-04 CTGCTGTTCT TTTTGCTG TGAATTGTAa chr2R:16179299-16179419 6 4.97e-04 TGTTA TTGTGTTT GTTATTGAAA chr2R:19164051-19164171 54 4.97e-04 ATATCGATAA TTTTTCTT CTACTCTTTT chrX:4151104-4151224 51 4.97e-04 CAACCGCACT TTTCGCTT TATACACAAG chr2L:7557496-7557616 73 4.97e-04 CGAAAATATT TTGTGTTT TATTTACTCA chr2R:23429169-23429289 113 4.97e-04 AACCACATAT TTTCGCTT chr2R:21250432-21250552 27 4.97e-04 TGTTGAATAA TTTTTCTT TTTTTCCACG chr3L:2817964-2818084 27 4.97e-04 TATAGCTTGT TTTTTCTT ATTTATTTTT chrX:510696-510816 46 4.97e-04 CTATGACTTA TTTCGCTT TATTGACTCT chrX:12511407-12511527 94 4.97e-04 TTCTTATTTG TTTCGCTT TTCGTTACTC chr3R:22057938-22058058 4 4.97e-04 atg tttttctt ttAGCTACAC chrX:1835148-1835268 99 4.97e-04 TAGCTGTTTA TTTTTCTT GCCGGTTTCT chr3L:9107070-9107190 63 4.97e-04 TTACTTTATG TTTTTCTT TTTTTCGGAT chr3R:19167543-19167663 89 5.18e-04 GTTGCAACAG TTGTGCTT TCAGTCAGTA chr3R:9783358-9783478 16 6.14e-04 TCATTACCCA TTTCGTTG TTATGCCTAA chr3R:20274675-20274795 90 6.14e-04 ttatatttta tttttttg CCCAACCTAA chr3L:13924080-13924200 82 6.14e-04 GTTCTCAGTG TTTTTTTG CCTTACGATA chr2L:13411737-13411857 16 6.14e-04 TGAGTGGCGC TTTTTTTG CACGGCCAAC chrX:14501151-14501271 42 6.14e-04 TTTTCAAGTA TTTTTTTG CATTTTTAAT chrX:7317943-7318063 88 6.14e-04 TTAAATCGGA TTTCGTTG ACGGTGCAGT chr3L:10678079-10678199 8 6.91e-04 TTTGTTA TTTCTTTT TGGGCGCTGC chr3R:29139278-29139398 72 6.91e-04 TTTGAGCACA TTTCTTTT TGTGCAGTGA chrX:22839754-22839874 76 6.91e-04 AGTCGACGTG TTTCTTTT CGTGCATGTA chr3L:3539416-3539536 45 6.91e-04 TTAATTTTAT TTTCTTTT TTGGGCATAG chrX:15619921-15620041 76 6.91e-04 tcctctctct tttctttt cttttctttc chrX:10106888-10107008 27 6.91e-04 ttattttcat tttctttt attcgctttt chr3L:19906284-19906404 39 7.63e-04 GTTTCGGCAT TTTCGCTG CGTAAACATT chrX:8259993-8260113 13 7.63e-04 ACATCGATTT TTGTGTTG CATGCAAAAG chr2L:22148894-22149014 50 9.00e-04 CAGCACTAGC TTTCTCTT AGCTCATCAA chrX:5916240-5916360 89 9.00e-04 TTGGTGATGG TTGTTTTT TGGCGGCGAT chrX:9163259-9163379 89 9.00e-04 GGTCTTCTGG TTGTTTTT AATGTCCCAG chr2R:19455671-19455791 64 9.00e-04 GTCTTTTTGG TTGTTTTT CTCTTTTAAA chrX:11083150-11083270 67 9.00e-04 CTTGTTTAGA TTGTTTTT TGATTATATC chr3L:21202972-21203092 76 9.39e-04 TTCTATTCTG TTTTGGTT ACCTTTTTGT chrX:15546635-15546755 10 9.39e-04 tgcttttgg ttttggtt ttggCGCTCA chr3R:8893184-8893304 71 1.09e-03 TTACTAGTTC TTTTATTT TTCCTTTTGA chrX:12905172-12905292 26 1.09e-03 GTTTAAATAC TTTTATTT TGTATTTATT chr2R:22809316-22809436 6 1.09e-03 TGTCA TTTTATTT ATTTATTAAG chrX:13964962-13965082 57 1.09e-03 TTTCTGTTTA TTTTATTT TTTCCTCGAA chr3R:19158137-19158257 57 1.09e-03 gtagtatatt ttttattt tactattttg chrX:13838381-13838501 106 1.14e-03 TTTATTTTAA TTGTTCTT TTATATT chr2R:22586932-22587052 63 1.14e-03 TTTGTGCCTT TTGCGCTT TATATTTTTT chrX:3772863-3772983 1 1.14e-03 . TTGCGCTT ACTCACAATC chr3L:515761-515881 106 1.25e-03 ACGAACCGCG TTTTACTT Taacaaa chr3R:17793448-17793568 91 1.25e-03 ATGGCATATC TTTTACTT ATTTGCCCGC chr2L:8203865-8203985 30 1.39e-03 AATGAGACTC TTGCTTTT AAAGTACCAA chr2R:23797865-23797985 22 1.39e-03 TTTCGCCGCA TTGCTTTT ATTATTATGG chr2L:16539120-16539240 86 1.48e-03 AATTAAGCAT TTTTTGTT CCGCTGCTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTKTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13779851-13779971 7.5e-05 112_[+1] chr3L:2553149-2553269 7.5e-05 102_[+1]_10 chr3L:12118195-12118315 7.5e-05 87_[+1]_25 chr3L:881064-881184 7.5e-05 99_[+1]_13 chrX:13754761-13754881 7.5e-05 77_[+1]_35 chr3R:22635744-22635864 7.5e-05 15_[+1]_97 chr3R:30526688-30526808 7.5e-05 20_[+1]_92 chr3R:24079259-24079379 7.5e-05 104_[+1]_8 chr3L:8775489-8775609 7.5e-05 50_[+1]_62 chrX:8060457-8060577 7.5e-05 36_[+1]_76 chr3R:25518456-25518576 7.5e-05 40_[+1]_72 chr3R:24846584-24846704 7.5e-05 110_[+1]_2 chrX:10556360-10556480 7.5e-05 35_[+1]_77 chr3L:5172586-5172706 7.5e-05 42_[+1]_70 chr2R:19126080-19126200 7.5e-05 21_[+1]_91 chr2R:21026341-21026461 7.5e-05 83_[+1]_29 chrX:13235113-13235233 7.5e-05 66_[+1]_46 chrX:10723964-10724084 7.5e-05 91_[+1]_21 chr3R:22543151-22543271 7.5e-05 44_[+1]_68 chrX:7980975-7981095 7.5e-05 52_[+1]_60 chr2R:17396027-17396147 7.5e-05 48_[+1]_64 chrX:15303749-15303869 7.5e-05 20_[+1]_92 chr3L:17967770-17967890 7.5e-05 62_[+1]_50 chr3R:15293103-15293223 7.5e-05 13_[+1]_99 chr3R:22816570-22816690 7.5e-05 52_[+1]_60 chrX:12498224-12498344 7.5e-05 19_[+1]_93 chr3L:10749783-10749903 7.5e-05 111_[+1]_1 chr3R:13066765-13066885 7.5e-05 1_[+1]_111 chrX:13817890-13818010 7.5e-05 66_[+1]_46 chr3R:13722613-13722733 7.5e-05 55_[+1]_57 chr3L:19044923-19045043 0.00012 95_[+1]_17 chrX:4616067-4616187 0.00012 104_[+1]_8 chr3L:8869447-8869567 0.00012 107_[+1]_5 chr2L:2131601-2131721 0.00012 5_[+1]_107 chr3R:20328372-20328492 0.00012 112_[+1] chr3R:26248259-26248379 0.00012 64_[+1]_48 chr3R:22550224-22550344 0.00012 88_[+1]_24 chrX:4813871-4813991 0.00012 64_[+1]_48 chr3L:83063-83183 0.00012 50_[+1]_62 chrX:13285140-13285260 0.00012 66_[+1]_46 chr3R:22046627-22046747 0.00015 80_[+1]_32 chr2L:16538285-16538405 0.00015 59_[+1]_53 chrX:11485194-11485314 0.00015 69_[+1]_43 chr2R:13014480-13014600 0.00015 101_[+1]_11 chrX:10547729-10547849 0.00015 17_[+1]_95 chr3L:22826431-22826551 0.00015 59_[+1]_53 chr2L:19472394-19472514 0.00015 93_[+1]_19 chr3L:18766632-18766752 0.00015 32_[+1]_80 chr3L:3768761-3768881 0.00015 12_[+1]_100 chr3R:24575898-24576018 0.00034 75_[+1]_37 chrX:19148100-19148220 0.00034 2_[+1]_110 chrX:3361794-3361914 0.00034 86_[+1]_26 chr3R:19792489-19792609 0.00034 55_[+1]_57 chr2L:7579165-7579285 0.00034 90_[+1]_22 chr3R:23787147-23787267 0.00034 19_[+1]_93 chr2L:9487588-9487708 0.00034 110_[+1]_2 chrX:8231740-8231860 0.00034 100_[+1]_12 chr3L:12834735-12834855 0.00034 2_[+1]_110 chrX:19165395-19165515 0.00034 81_[+1]_31 chr2L:11963569-11963689 0.00034 86_[+1]_26 chrX:12964723-12964843 0.00034 42_[+1]_70 chr3R:24101578-24101698 0.00034 10_[+1]_102 chrX:3667333-3667453 0.00034 92_[+1]_20 chr2L:8603941-8604061 0.00034 5_[+1]_107 chrX:3446791-3446911 0.00034 88_[+1]_24 chrX:10727453-10727573 0.00034 52_[+1]_60 chr2L:414252-414372 0.00034 10_[+1]_102 chr2R:11630353-11630473 0.00034 62_[+1]_50 chr3L:16144335-16144455 0.00034 15_[+1]_97 chr3R:5019102-5019222 0.00036 63_[+1]_49 chrX:12750353-12750473 0.00036 29_[+1]_83 chr3R:16154381-16154501 0.00036 39_[+1]_73 chr2R:16179299-16179419 0.0005 5_[+1]_107 chr2R:19164051-19164171 0.0005 53_[+1]_59 chrX:4151104-4151224 0.0005 50_[+1]_62 chr2L:7557496-7557616 0.0005 72_[+1]_40 chr2R:23429169-23429289 0.0005 112_[+1] chr2R:21250432-21250552 0.0005 26_[+1]_86 chr3L:2817964-2818084 0.0005 26_[+1]_86 chrX:510696-510816 0.0005 45_[+1]_67 chrX:12511407-12511527 0.0005 93_[+1]_19 chr3R:22057938-22058058 0.0005 3_[+1]_109 chrX:1835148-1835268 0.0005 98_[+1]_14 chr3L:9107070-9107190 0.0005 62_[+1]_50 chr3R:19167543-19167663 0.00052 88_[+1]_24 chr3R:9783358-9783478 0.00061 15_[+1]_97 chr3R:20274675-20274795 0.00061 89_[+1]_23 chr3L:13924080-13924200 0.00061 81_[+1]_31 chr2L:13411737-13411857 0.00061 15_[+1]_97 chrX:14501151-14501271 0.00061 41_[+1]_71 chrX:7317943-7318063 0.00061 87_[+1]_25 chr3L:10678079-10678199 0.00069 7_[+1]_105 chr3R:29139278-29139398 0.00069 71_[+1]_41 chrX:22839754-22839874 0.00069 75_[+1]_37 chr3L:3539416-3539536 0.00069 44_[+1]_68 chrX:15619921-15620041 0.00069 75_[+1]_37 chrX:10106888-10107008 0.00069 26_[+1]_86 chr3L:19906284-19906404 0.00076 38_[+1]_74 chrX:8259993-8260113 0.00076 12_[+1]_100 chr2L:22148894-22149014 0.0009 49_[+1]_63 chrX:5916240-5916360 0.0009 88_[+1]_24 chrX:9163259-9163379 0.0009 88_[+1]_24 chr2R:19455671-19455791 0.0009 63_[+1]_49 chrX:11083150-11083270 0.0009 66_[+1]_46 chr3L:21202972-21203092 0.00094 75_[+1]_37 chrX:15546635-15546755 0.00094 9_[+1]_103 chr3R:8893184-8893304 0.0011 70_[+1]_42 chrX:12905172-12905292 0.0011 25_[+1]_87 chr2R:22809316-22809436 0.0011 5_[+1]_107 chrX:13964962-13965082 0.0011 56_[+1]_56 chr3R:19158137-19158257 0.0011 56_[+1]_56 chrX:13838381-13838501 0.0011 105_[+1]_7 chr2R:22586932-22587052 0.0011 62_[+1]_50 chrX:3772863-3772983 0.0011 [+1]_112 chr3L:515761-515881 0.0013 105_[+1]_7 chr3R:17793448-17793568 0.0013 90_[+1]_22 chr2L:8203865-8203985 0.0014 29_[+1]_83 chr2R:23797865-23797985 0.0014 21_[+1]_91 chr2L:16539120-16539240 0.0015 85_[+1]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTKTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTKTTT width=8 seqs=119 chrX:13779851-13779971 ( 113) TTTTGTTT 1 chr3L:2553149-2553269 ( 103) TTTTGTTT 1 chr3L:12118195-12118315 ( 88) TTTTGTTT 1 chr3L:881064-881184 ( 100) TTTTGTTT 1 chrX:13754761-13754881 ( 78) TTTTGTTT 1 chr3R:22635744-22635864 ( 16) TTTTGTTT 1 chr3R:30526688-30526808 ( 21) TTTTGTTT 1 chr3R:24079259-24079379 ( 105) TTTTGTTT 1 chr3L:8775489-8775609 ( 51) TTTTGTTT 1 chrX:8060457-8060577 ( 37) TTTTGTTT 1 chr3R:25518456-25518576 ( 41) TTTTGTTT 1 chr3R:24846584-24846704 ( 111) TTTTGTTT 1 chrX:10556360-10556480 ( 36) TTTTGTTT 1 chr3L:5172586-5172706 ( 43) TTTTGTTT 1 chr2R:19126080-19126200 ( 22) TTTTGTTT 1 chr2R:21026341-21026461 ( 84) TTTTGTTT 1 chrX:13235113-13235233 ( 67) TTTTGTTT 1 chrX:10723964-10724084 ( 92) TTTTGTTT 1 chr3R:22543151-22543271 ( 45) TTTTGTTT 1 chrX:7980975-7981095 ( 53) TTTTGTTT 1 chr2R:17396027-17396147 ( 49) TTTTGTTT 1 chrX:15303749-15303869 ( 21) TTTTGTTT 1 chr3L:17967770-17967890 ( 63) TTTTGTTT 1 chr3R:15293103-15293223 ( 14) TTTTGTTT 1 chr3R:22816570-22816690 ( 53) TTTTGTTT 1 chrX:12498224-12498344 ( 20) TTTTGTTT 1 chr3L:10749783-10749903 ( 112) TTTTGTTT 1 chr3R:13066765-13066885 ( 2) TTTTGTTT 1 chrX:13817890-13818010 ( 67) TTTTGTTT 1 chr3R:13722613-13722733 ( 56) TTTTGTTT 1 chr3L:19044923-19045043 ( 96) TTTTGCTT 1 chrX:4616067-4616187 ( 105) TTTTGCTT 1 chr3L:8869447-8869567 ( 108) TTTTGCTT 1 chr2L:2131601-2131721 ( 6) TTTTGCTT 1 chr3R:20328372-20328492 ( 113) TTTTGCTT 1 chr3R:26248259-26248379 ( 65) TTTTGCTT 1 chr3R:22550224-22550344 ( 89) TTTTGCTT 1 chrX:4813871-4813991 ( 65) TTTTGCTT 1 chr3L:83063-83183 ( 51) TTTTGCTT 1 chrX:13285140-13285260 ( 67) TTTTGCTT 1 chr3R:22046627-22046747 ( 81) TTTTGTTG 1 chr2L:16538285-16538405 ( 60) TTTTGTTG 1 chrX:11485194-11485314 ( 70) TTTTGTTG 1 chr2R:13014480-13014600 ( 102) TTTTGTTG 1 chrX:10547729-10547849 ( 18) TTTTGTTG 1 chr3L:22826431-22826551 ( 60) TTTTGTTG 1 chr2L:19472394-19472514 ( 94) TTTTGTTG 1 chr3L:18766632-18766752 ( 33) TTTTGTTG 1 chr3L:3768761-3768881 ( 13) TTTTGTTG 1 chr3R:24575898-24576018 ( 76) TTTTTTTT 1 chrX:19148100-19148220 ( 3) TTTTTTTT 1 chrX:3361794-3361914 ( 87) TTTTTTTT 1 chr3R:19792489-19792609 ( 56) TTTTTTTT 1 chr2L:7579165-7579285 ( 91) TTTTTTTT 1 chr3R:23787147-23787267 ( 20) TTTTTTTT 1 chr2L:9487588-9487708 ( 111) TTTTTTTT 1 chrX:8231740-8231860 ( 101) TTTTTTTT 1 chr3L:12834735-12834855 ( 3) TTTTTTTT 1 chrX:19165395-19165515 ( 82) TTTTTTTT 1 chr2L:11963569-11963689 ( 87) TTTTTTTT 1 chrX:12964723-12964843 ( 43) TTTTTTTT 1 chr3R:24101578-24101698 ( 11) TTTTTTTT 1 chrX:3667333-3667453 ( 93) TTTTTTTT 1 chr2L:8603941-8604061 ( 6) TTTTTTTT 1 chrX:3446791-3446911 ( 89) TTTTTTTT 1 chrX:10727453-10727573 ( 53) TTTTTTTT 1 chr2L:414252-414372 ( 11) TTTCGTTT 1 chr2R:11630353-11630473 ( 63) TTTTTTTT 1 chr3L:16144335-16144455 ( 16) TTTTTTTT 1 chr3R:5019102-5019222 ( 64) TTTTGCTG 1 chrX:12750353-12750473 ( 30) TTTTGCTG 1 chr3R:16154381-16154501 ( 40) TTTTGCTG 1 chr2R:16179299-16179419 ( 6) TTGTGTTT 1 chr2R:19164051-19164171 ( 54) TTTTTCTT 1 chrX:4151104-4151224 ( 51) TTTCGCTT 1 chr2L:7557496-7557616 ( 73) TTGTGTTT 1 chr2R:23429169-23429289 ( 113) TTTCGCTT 1 chr2R:21250432-21250552 ( 27) TTTTTCTT 1 chr3L:2817964-2818084 ( 27) TTTTTCTT 1 chrX:510696-510816 ( 46) TTTCGCTT 1 chrX:12511407-12511527 ( 94) TTTCGCTT 1 chr3R:22057938-22058058 ( 4) TTTTTCTT 1 chrX:1835148-1835268 ( 99) TTTTTCTT 1 chr3L:9107070-9107190 ( 63) TTTTTCTT 1 chr3R:19167543-19167663 ( 89) TTGTGCTT 1 chr3R:9783358-9783478 ( 16) TTTCGTTG 1 chr3R:20274675-20274795 ( 90) TTTTTTTG 1 chr3L:13924080-13924200 ( 82) TTTTTTTG 1 chr2L:13411737-13411857 ( 16) TTTTTTTG 1 chrX:14501151-14501271 ( 42) TTTTTTTG 1 chrX:7317943-7318063 ( 88) TTTCGTTG 1 chr3L:10678079-10678199 ( 8) TTTCTTTT 1 chr3R:29139278-29139398 ( 72) TTTCTTTT 1 chrX:22839754-22839874 ( 76) TTTCTTTT 1 chr3L:3539416-3539536 ( 45) TTTCTTTT 1 chrX:15619921-15620041 ( 76) TTTCTTTT 1 chrX:10106888-10107008 ( 27) TTTCTTTT 1 chr3L:19906284-19906404 ( 39) TTTCGCTG 1 chrX:8259993-8260113 ( 13) TTGTGTTG 1 chr2L:22148894-22149014 ( 50) TTTCTCTT 1 chrX:5916240-5916360 ( 89) TTGTTTTT 1 chrX:9163259-9163379 ( 89) TTGTTTTT 1 chr2R:19455671-19455791 ( 64) TTGTTTTT 1 chrX:11083150-11083270 ( 67) TTGTTTTT 1 chr3L:21202972-21203092 ( 76) TTTTGGTT 1 chrX:15546635-15546755 ( 10) TTTTGGTT 1 chr3R:8893184-8893304 ( 71) TTTTATTT 1 chrX:12905172-12905292 ( 26) TTTTATTT 1 chr2R:22809316-22809436 ( 6) TTTTATTT 1 chrX:13964962-13965082 ( 57) TTTTATTT 1 chr3R:19158137-19158257 ( 57) TTTTATTT 1 chrX:13838381-13838501 ( 106) TTGTTCTT 1 chr2R:22586932-22587052 ( 63) TTGCGCTT 1 chrX:3772863-3772983 ( 1) TTGCGCTT 1 chr3L:515761-515881 ( 106) TTTTACTT 1 chr3R:17793448-17793568 ( 91) TTTTACTT 1 chr2L:8203865-8203985 ( 30) TTGCTTTT 1 chr2R:23797865-23797985 ( 22) TTGCTTTT 1 chr2L:16539120-16539240 ( 86) TTTTTGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTKTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.157 E= 6.0e-015 -1354 -1354 -1354 160 -1354 -1354 -1354 160 -1354 -1354 -66 143 -1354 -14 -1354 134 -244 -1354 172 16 -1354 56 -278 111 -1354 -1354 -1354 160 -1354 -1354 -4 133 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTKTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 119 E= 6.0e-015 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.109244 0.890756 0.000000 0.159664 0.000000 0.840336 0.058824 0.000000 0.571429 0.369748 0.000000 0.260504 0.025210 0.714286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.168067 0.831933 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTKTTT MEME-1 regular expression -------------------------------------------------------------------------------- TTTT[GT][TC]TT -------------------------------------------------------------------------------- Time 7.46 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAMAAAA MEME-2 width = 8 sites = 132 llr = 899 E-value = 8.2e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 7a948aa9 pos.-specific C 3::4:::: probability G ::1:3::1 matrix T :::2:::: bits 2.5 2.3 2.0 1.8 Relative 1.5 * ** Entropy 1.3 ** *** (9.8 bits) 1.0 *** **** 0.8 *** **** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AAACAAAA consensus C AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:2553149-2553269 81 6.05e-05 AACAAGAGAA AAACAAAA GTCACttgct chr3R:17706584-17706704 61 6.05e-05 ATAGTaatca aaacaaaa taaaaatcat chrX:13396078-13396198 15 6.05e-05 AGAAATAAAA AAACAAAA CCCATGATGT chrX:16780319-16780439 47 6.05e-05 cgaaagccaa aaacaaaa acTATATTCT chr2L:11211529-11211649 63 6.05e-05 ACGAAACAAA AAACAAAA ACAACAAAAA chr3R:16154381-16154501 57 6.05e-05 GTGAATTGTA aaacaaaa ccaaaacaaa chr2L:3059308-3059428 99 6.05e-05 CTGAACATTC AAACAAAA AACCTAATCG chr3L:515761-515881 85 6.05e-05 AAAAAATTCA AAACAAAA AAAACGAACC chrX:17694355-17694475 108 6.05e-05 GACAATCAAC AAACAAAA CAAAT chr3L:11220488-11220608 29 6.05e-05 AAATAAGAGC AAACAAAA GACTTTTAAA chr3R:17793448-17793568 32 6.05e-05 ggggAAGGGA AAACAAAA CACGAAAAAG chr2R:11180830-11180950 41 6.05e-05 gaaaaaaata aaacaaaa acaaaaacca chrX:13235113-13235233 3 6.05e-05 aa aaacaaaa acaaTTCTGC chrX:16718413-16718533 108 6.05e-05 TAacaattac aaacaaaa aaaaa chr2R:18317400-18317520 33 6.05e-05 CCaaaaaaaa aaacaaaa aaaaTTGCGA chr3L:19334710-19334830 9 6.05e-05 GCAAAATA AAACAAAA CGGCATGCAA chr3R:23333121-23333241 14 6.05e-05 TAAAATAAGC AAACAAAA CGAAAATCAC chr3L:6845335-6845455 78 6.05e-05 TCAGCGAAAT AAACAAAA ATCGAGCAAT chrX:15303749-15303869 102 6.05e-05 taaaaaataa aaacaaaa aataataatt chr3R:15293103-15293223 55 6.05e-05 CAGGGCAATA AAACAAAA ACGAAAAACG chr3L:11547698-11547818 95 6.05e-05 AATTAGTAAA AAACAAAA TGAAAATATG chr2R:18327209-18327329 101 6.05e-05 CCAAACCAGA AAACAAAA TGGAAAAATG chrX:1271172-1271292 103 6.05e-05 ACGaaacgaa aaacaaaa ttaacaaaaa chrX:11503795-11503915 46 6.05e-05 aaatacaaca aaacaaaa taataaaaaa chrX:11658320-11658440 53 6.05e-05 AAAAGTACAA AAACAAAA GTACGAGTGC chrX:12757219-12757339 82 6.05e-05 TGGCAAAAAT AAACAAAA AAAAACTTAT chr3L:3768761-3768881 65 6.05e-05 GAAACAAATA AAACAAAA GAAATGGAGG chr3R:29935868-29935988 1 1.26e-04 . CAACAAAA TAATCAGCTG chr3L:2423733-2423853 29 1.26e-04 CAATTGAAAG CAACAAAA GACGGCTCGC chr3L:8076335-8076455 77 1.26e-04 GCTGCGGAAT CAACAAAA ATATTTTTGC chr3R:8893184-8893304 22 1.26e-04 CTAGCCCATC AAACGAAA AATATATTGA chr2R:10045498-10045618 12 1.26e-04 GAAATGCGCG AAACGAAA AAGGTGGCGT chr2R:23429169-23429289 15 1.26e-04 AACCCCCCAG CAACAAAA CAAAGAGAAA chr2R:22586932-22587052 112 1.26e-04 CCCACACAAA CAACAAAA T chrX:3772863-3772983 56 1.26e-04 ATAATAACTG aaacgaaa aacacgcgca chr3R:9593508-9593628 67 1.26e-04 Ccaacaacaa caacaaaa acTTTTATGA chr3R:11456693-11456813 17 1.26e-04 GCCGGAGCAA CAACAAAA AAATAAAAAC chrX:11817225-11817345 81 1.26e-04 acaaaatcat aaacgaaa aacgacGAAA chr3R:15474548-15474668 9 1.26e-04 atgaaatg aaacgaaa taaaacaaTG chr3R:21581354-21581474 16 1.26e-04 GCTTGCTAAG CAACAAAA ACAGCAAGAA chr3R:26117454-26117574 5 2.36e-04 aaaa aaaaaaaa aaaatataca chr2R:17457975-17458095 96 2.36e-04 TAAAAAACGT AAAAAAAA TGTGCTGCAG chr3L:13282171-13282291 47 2.36e-04 GAAAACGACT AAAAAAAA GAAGAAAAAC chrX:19148100-19148220 103 2.36e-04 AAAGCCCGAA AAAAAAAA TGGGAAGGTA chr3L:3050329-3050449 37 2.36e-04 ACACTGGTCG AAAAAAAA GAAAAAAACA chrX:7710588-7710708 56 2.36e-04 ACAAATAGAC AAAAAAAA TGCGAGCACT chr2R:22809316-22809436 25 2.36e-04 TTTATTAAGA AAAAAAAA CGTATGCTCG chr3L:5172586-5172706 72 2.36e-04 TGTTTTGGCA AAAAAAAA TTGCGTCATT chrX:13964962-13965082 103 2.36e-04 TTTTCGATaa aaaaaaaa taaaataaaa chrX:9578933-9579053 76 2.36e-04 AGAGACAGAT AAAAAAAA TCAGAAGGAA chrX:13972530-13972650 20 2.36e-04 CATTACACCG AAAAAAAA TTTTAAATTT chrX:10723964-10724084 1 2.36e-04 . aaaaaaaA GTTGAAATGC chr3L:20113015-20113135 18 2.36e-04 TTAGGAAACT AAAAAAAA TTAATTTGAT chr3L:3539416-3539536 94 2.36e-04 GCTCGCGGCA AAAAAAAA GTATATCAGC chr3R:9222531-9222651 72 2.36e-04 aagaagacag aaaaaaaa caacaGAAGC chrX:15619921-15620041 12 2.36e-04 TAAGACCaac aaaaaaaa aaaaaaaaaG chrX:3667333-3667453 2 2.36e-04 A AAAAAAAA ATCTTAAGAT chr2L:16539120-16539240 5 2.36e-04 TCTG AAAAAAAA GAGGGGAAAT chrX:11524023-11524143 99 2.36e-04 aaaaaaccaa aaaaaaaa aaaaGCCGAA chr3L:21097534-21097654 78 2.36e-04 GCAAAAAATA AAAAAAAA TAAAAAATAC chr2R:10778094-10778214 59 2.54e-04 GAAAAATAAC CAACGAAA TAGACAACAA chr2L:9692525-9692645 31 2.54e-04 GCAACAACGA CAACGAAA ATAATTGCAC chr3L:9107070-9107190 22 2.54e-04 GGGCAGCTCT CAACGAAA AATTGGCGAC chr2R:16179299-16179419 66 3.74e-04 AAATTATGCA CAAAAAAA GTAGTGTGTT chrX:2742217-2742337 93 3.74e-04 TAAGCCATAA AAAAGAAA AAAAGGGTTT chr2R:11098358-11098478 86 3.74e-04 CAAAAAAGCC AAAAGAAA ATAATAAATA chr2R:21250432-21250552 85 3.74e-04 AAGTCAAAAG AAAAGAAA ACTTCAAGTT chr3R:22097006-22097126 10 3.74e-04 AAAAATGGT CAAAAAAA GTGAGCAAAA chrX:15308685-15308805 52 3.74e-04 AACAACTGGA AAAAGAAA TGCCTGCATT chrX:22839754-22839874 43 3.74e-04 AAAAAGGGGA AAAAGAAA ACGATTATTC chr3L:18783601-18783721 89 3.74e-04 caataacaga aaaagaaa CACACACAGC chr2L:5463182-5463302 5 3.74e-04 CCTG CAAAAAAA CCGGGCTGCT chrX:8170561-8170681 9 3.74e-04 AAATAATA CAAAAAAA TGATCATTTC chrX:10727453-10727573 32 3.74e-04 aataaaaata caaaaaaa taaaaatGCA chrX:7317943-7318063 70 3.74e-04 ATGTTTAGCG AAAAGAAA TTAAATCGGA chr2R:10549974-10550094 100 3.74e-04 ATGTGTTTAA AAAAGAAA AATTTAATAA chr2R:23797865-23797985 73 3.74e-04 GGGAAGAACA CAAAAAAA CATAAACAAT chr2L:16040329-16040449 79 5.53e-04 AAATATATTC AAATAAAA AATCAAAAAG chrX:18479851-18479971 108 5.53e-04 ctattatata AAATAAAA TCGAT chr3R:21586147-21586267 34 5.53e-04 ACCCCGGAAA AAGCAAAA GCCCTCGAAA chr2R:18314828-18314948 68 5.53e-04 ATTGTAATTT AAACAAAG CAACGAAGAA chr2R:17580707-17580827 7 5.53e-04 aaaaac aaataaaA TACATCAATT chrX:13243600-13243720 107 5.53e-04 AAGCTACACA AAATAAAA AGATAA chr2L:18153202-18153322 22 5.53e-04 TTATTATTCT AAGCAAAA TATTAAACAG chrX:12750353-12750473 6 5.53e-04 aaata aaataaaa caaCCCTCGT chrX:10556360-10556480 74 5.53e-04 GTTTGTCAAA AAATAAAA GTGTTTTTTG chr3L:16709789-16709909 100 5.53e-04 ATAAAAAATA AAATAAAA AAATTATATT chr2L:16641024-16641144 54 5.53e-04 TTGCGCACAA AAATAAAA ATGCACGCTT chr3R:22543151-22543271 56 5.53e-04 TTTGTTTGTA AAATAAAA CCCCTGCAAT chr3L:2805310-2805430 21 5.53e-04 aaatataaat aaataaaa aaaGGGGGGG chr2L:11963569-11963689 6 5.53e-04 AAATG AAATAAAA AACGTGACTG chrX:11083150-11083270 93 5.53e-04 TCGTTGACAC AAGCAAAA CTGGAAAAAT chrX:3446791-3446911 4 5.53e-04 gtc aaataaaa tacaaaCACA chr2L:12271405-12271525 57 5.53e-04 AATATCTTTA AAATAAAA TAACTATATT chr3R:9933571-9933691 27 5.86e-04 TGGCAGCGTG CAAAGAAA AGCAAAAGAA chrX:13746989-13747109 45 5.86e-04 TTTTCTTAAA CAAAGAAA TAAATGCATG chr3L:564095-564215 29 5.86e-04 TAAGTAATTT CAAAGAAA TGTGCTCAAT chr3R:26248259-26248379 109 5.86e-04 AAATACGTGT CAAAGAAA TATT chrX:10087817-10087937 37 7.81e-04 ATAAAAGTAT AAATGAAA CAAACAAACT chrX:8258217-8258337 51 7.81e-04 GGGGGATTGG CAACAAAG TAAGCTGACT chrX:11485194-11485314 94 7.81e-04 TGTCACACAA AAACGAAG AAAACTCCTG chr2L:8203865-8203985 13 7.81e-04 ATGGGTCATA AAATGAAA ATGAGACTCT chr3L:2817964-2818084 109 7.81e-04 CGAAGCTCGG CAACAAAG CATA chr2R:4271827-4271947 45 7.81e-04 AGGCTTCATA CAACAAAG CTACAAATAG chr2L:13411737-13411857 37 7.81e-04 GGCCAACAGA AAGCGAAA AGAACAAACA chrX:15546635-15546755 105 7.81e-04 GCACCAACAA CAATAAAA GACACAGA chr2L:8603941-8604061 96 7.81e-04 GCTTTGTTTC CAGCAAAA TGAGCAGCGG chr2R:11630353-11630473 90 7.81e-04 TATCTGCCAA AAACGAAG AAATAAACAC chrX:13817890-13818010 3 7.81e-04 GA AAATGAAA TTGTTGGAAA chr3R:25735824-25735944 9 9.00e-04 GAATGTGG AAAAAAAG GTGGCCTGAT chr3R:14736885-14737005 59 9.00e-04 TAAGACAGCG AAGAAAAA AGAACCAAGT chr3L:22830403-22830523 101 9.00e-04 Aaaaaagaag aagaaaaa agaagcgaaa chr3R:22550224-22550344 54 9.00e-04 AAAATAAACC AAGAAAAA GCATGGCTTA chrX:11373399-11373519 9 9.00e-04 AGTGTCTG AAAAAAAG AGTCAGCTAC chr2L:9547458-9547578 109 9.00e-04 TAAAATTATG AAAAAAag cttt chr3L:12075100-12075220 78 9.54e-04 CACCTGGCGA CAGCGAAA ATTCCGCTTA chr3R:20328372-20328492 27 9.54e-04 AATCAATAAG CAATGAAA TTAAAATTCT chrX:8231941-8232061 79 1.12e-03 TCAACAATaa caaaaaag cccataaata chrX:13747799-13747919 10 1.12e-03 CGGAGACCT CAGAAAAA AACCACAGCC chr2L:7557496-7557616 14 1.12e-03 AACCGACCGA CAAAAAAG ATACAAAAAT chrX:13277936-13278056 95 1.12e-03 GCAAAATGTG AAACAAGA TAAAATAACA chrX:20657135-20657255 5 1.26e-03 AATA AAATAAAG CACAAAAGAA chr3R:16277171-16277291 84 1.26e-03 CGAAATTACG AAGCAAAG AATCTCTAGT chr2L:16537155-16537275 69 1.54e-03 TTTTAACAAA AAGTGAAA ATATGGAATT chrX:6641735-6641855 11 1.54e-03 AAGTCGCGTT AAGTGAAA CCACTATAGG chr2L:10802387-10802507 36 1.54e-03 TGTTCTGGCT AAAAAAGA TCAGGTGATT chrX:11156300-11156420 25 1.54e-03 CATAATTTAC CAGTAAAA TACGGAATAG chr3R:22816570-22816690 28 1.54e-03 AAAATGGTAA AAATGAAG TTATTAAATT chr2R:13550411-13550531 19 1.54e-03 AACTTATGTA CAATAAAG TAAGCAACAA chrX:8410537-8410657 97 1.69e-03 ACACAGCCAC AAAAGAGA TCGTGAGAGG chr3R:5694593-5694713 10 1.69e-03 TTAAAAAAT CAAAAAGA TCTTAAAATT chr3R:17807334-17807454 16 1.69e-03 AATTTTCCCA AAAAGAGA GGTTCAAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:2553149-2553269 6e-05 80_[+2]_32 chr3R:17706584-17706704 6e-05 60_[+2]_52 chrX:13396078-13396198 6e-05 14_[+2]_98 chrX:16780319-16780439 6e-05 46_[+2]_66 chr2L:11211529-11211649 6e-05 62_[+2]_50 chr3R:16154381-16154501 6e-05 56_[+2]_56 chr2L:3059308-3059428 6e-05 98_[+2]_14 chr3L:515761-515881 6e-05 84_[+2]_28 chrX:17694355-17694475 6e-05 107_[+2]_5 chr3L:11220488-11220608 6e-05 28_[+2]_84 chr3R:17793448-17793568 6e-05 31_[+2]_81 chr2R:11180830-11180950 6e-05 40_[+2]_72 chrX:13235113-13235233 6e-05 2_[+2]_110 chrX:16718413-16718533 6e-05 107_[+2]_5 chr2R:18317400-18317520 6e-05 32_[+2]_80 chr3L:19334710-19334830 6e-05 8_[+2]_104 chr3R:23333121-23333241 6e-05 13_[+2]_99 chr3L:6845335-6845455 6e-05 77_[+2]_35 chrX:15303749-15303869 6e-05 101_[+2]_11 chr3R:15293103-15293223 6e-05 54_[+2]_58 chr3L:11547698-11547818 6e-05 94_[+2]_18 chr2R:18327209-18327329 6e-05 100_[+2]_12 chrX:1271172-1271292 6e-05 102_[+2]_10 chrX:11503795-11503915 6e-05 45_[+2]_67 chrX:11658320-11658440 6e-05 52_[+2]_60 chrX:12757219-12757339 6e-05 81_[+2]_31 chr3L:3768761-3768881 6e-05 64_[+2]_48 chr3R:29935868-29935988 0.00013 [+2]_112 chr3L:2423733-2423853 0.00013 28_[+2]_84 chr3L:8076335-8076455 0.00013 76_[+2]_36 chr3R:8893184-8893304 0.00013 21_[+2]_91 chr2R:10045498-10045618 0.00013 11_[+2]_101 chr2R:23429169-23429289 0.00013 14_[+2]_98 chr2R:22586932-22587052 0.00013 111_[+2]_1 chrX:3772863-3772983 0.00013 55_[+2]_57 chr3R:9593508-9593628 0.00013 66_[+2]_46 chr3R:11456693-11456813 0.00013 16_[+2]_96 chrX:11817225-11817345 0.00013 80_[+2]_32 chr3R:15474548-15474668 0.00013 8_[+2]_104 chr3R:21581354-21581474 0.00013 15_[+2]_97 chr3R:26117454-26117574 0.00024 4_[+2]_108 chr2R:17457975-17458095 0.00024 95_[+2]_17 chr3L:13282171-13282291 0.00024 46_[+2]_66 chrX:19148100-19148220 0.00024 102_[+2]_10 chr3L:3050329-3050449 0.00024 36_[+2]_76 chrX:7710588-7710708 0.00024 55_[+2]_57 chr2R:22809316-22809436 0.00024 24_[+2]_88 chr3L:5172586-5172706 0.00024 71_[+2]_41 chrX:13964962-13965082 0.00024 102_[+2]_10 chrX:9578933-9579053 0.00024 75_[+2]_37 chrX:13972530-13972650 0.00024 19_[+2]_93 chrX:10723964-10724084 0.00024 [+2]_112 chr3L:20113015-20113135 0.00024 17_[+2]_95 chr3L:3539416-3539536 0.00024 93_[+2]_19 chr3R:9222531-9222651 0.00024 71_[+2]_41 chrX:15619921-15620041 0.00024 11_[+2]_101 chrX:3667333-3667453 0.00024 1_[+2]_111 chr2L:16539120-16539240 0.00024 4_[+2]_108 chrX:11524023-11524143 0.00024 98_[+2]_14 chr3L:21097534-21097654 0.00024 77_[+2]_35 chr2R:10778094-10778214 0.00025 58_[+2]_54 chr2L:9692525-9692645 0.00025 30_[+2]_82 chr3L:9107070-9107190 0.00025 21_[+2]_91 chr2R:16179299-16179419 0.00037 65_[+2]_47 chrX:2742217-2742337 0.00037 92_[+2]_20 chr2R:11098358-11098478 0.00037 85_[+2]_27 chr2R:21250432-21250552 0.00037 84_[+2]_28 chr3R:22097006-22097126 0.00037 9_[+2]_103 chrX:15308685-15308805 0.00037 51_[+2]_61 chrX:22839754-22839874 0.00037 42_[+2]_70 chr3L:18783601-18783721 0.00037 88_[+2]_24 chr2L:5463182-5463302 0.00037 4_[+2]_108 chrX:8170561-8170681 0.00037 8_[+2]_104 chrX:10727453-10727573 0.00037 31_[+2]_81 chrX:7317943-7318063 0.00037 69_[+2]_43 chr2R:10549974-10550094 0.00037 99_[+2]_13 chr2R:23797865-23797985 0.00037 72_[+2]_40 chr2L:16040329-16040449 0.00055 78_[+2]_34 chrX:18479851-18479971 0.00055 107_[+2]_5 chr3R:21586147-21586267 0.00055 33_[+2]_79 chr2R:18314828-18314948 0.00055 67_[+2]_45 chr2R:17580707-17580827 0.00055 6_[+2]_106 chrX:13243600-13243720 0.00055 106_[+2]_6 chr2L:18153202-18153322 0.00055 21_[+2]_91 chrX:12750353-12750473 0.00055 5_[+2]_107 chrX:10556360-10556480 0.00055 73_[+2]_39 chr3L:16709789-16709909 0.00055 99_[+2]_13 chr2L:16641024-16641144 0.00055 53_[+2]_59 chr3R:22543151-22543271 0.00055 55_[+2]_57 chr3L:2805310-2805430 0.00055 20_[+2]_92 chr2L:11963569-11963689 0.00055 5_[+2]_107 chrX:11083150-11083270 0.00055 92_[+2]_20 chrX:3446791-3446911 0.00055 3_[+2]_109 chr2L:12271405-12271525 0.00055 56_[+2]_56 chr3R:9933571-9933691 0.00059 26_[+2]_86 chrX:13746989-13747109 0.00059 44_[+2]_68 chr3L:564095-564215 0.00059 28_[+2]_84 chr3R:26248259-26248379 0.00059 108_[+2]_4 chrX:10087817-10087937 0.00078 36_[+2]_76 chrX:8258217-8258337 0.00078 50_[+2]_62 chrX:11485194-11485314 0.00078 93_[+2]_19 chr2L:8203865-8203985 0.00078 12_[+2]_100 chr3L:2817964-2818084 0.00078 108_[+2]_4 chr2R:4271827-4271947 0.00078 44_[+2]_68 chr2L:13411737-13411857 0.00078 36_[+2]_76 chrX:15546635-15546755 0.00078 104_[+2]_8 chr2L:8603941-8604061 0.00078 95_[+2]_17 chr2R:11630353-11630473 0.00078 89_[+2]_23 chrX:13817890-13818010 0.00078 2_[+2]_110 chr3R:25735824-25735944 0.0009 8_[+2]_104 chr3R:14736885-14737005 0.0009 58_[+2]_54 chr3L:22830403-22830523 0.0009 100_[+2]_12 chr3R:22550224-22550344 0.0009 53_[+2]_59 chrX:11373399-11373519 0.0009 8_[+2]_104 chr2L:9547458-9547578 0.0009 108_[+2]_4 chr3L:12075100-12075220 0.00095 77_[+2]_35 chr3R:20328372-20328492 0.00095 26_[+2]_86 chrX:8231941-8232061 0.0011 78_[+2]_34 chrX:13747799-13747919 0.0011 9_[+2]_103 chr2L:7557496-7557616 0.0011 13_[+2]_99 chrX:13277936-13278056 0.0011 94_[+2]_18 chrX:20657135-20657255 0.0013 4_[+2]_108 chr3R:16277171-16277291 0.0013 83_[+2]_29 chr2L:16537155-16537275 0.0015 68_[+2]_44 chrX:6641735-6641855 0.0015 10_[+2]_102 chr2L:10802387-10802507 0.0015 35_[+2]_77 chrX:11156300-11156420 0.0015 24_[+2]_88 chr3R:22816570-22816690 0.0015 27_[+2]_85 chr2R:13550411-13550531 0.0015 18_[+2]_94 chrX:8410537-8410657 0.0017 96_[+2]_16 chr3R:5694593-5694713 0.0017 9_[+2]_103 chr3R:17807334-17807454 0.0017 15_[+2]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAMAAAA width=8 seqs=132 chr3L:2553149-2553269 ( 81) AAACAAAA 1 chr3R:17706584-17706704 ( 61) AAACAAAA 1 chrX:13396078-13396198 ( 15) AAACAAAA 1 chrX:16780319-16780439 ( 47) AAACAAAA 1 chr2L:11211529-11211649 ( 63) AAACAAAA 1 chr3R:16154381-16154501 ( 57) AAACAAAA 1 chr2L:3059308-3059428 ( 99) AAACAAAA 1 chr3L:515761-515881 ( 85) AAACAAAA 1 chrX:17694355-17694475 ( 108) AAACAAAA 1 chr3L:11220488-11220608 ( 29) AAACAAAA 1 chr3R:17793448-17793568 ( 32) AAACAAAA 1 chr2R:11180830-11180950 ( 41) AAACAAAA 1 chrX:13235113-13235233 ( 3) AAACAAAA 1 chrX:16718413-16718533 ( 108) AAACAAAA 1 chr2R:18317400-18317520 ( 33) AAACAAAA 1 chr3L:19334710-19334830 ( 9) AAACAAAA 1 chr3R:23333121-23333241 ( 14) AAACAAAA 1 chr3L:6845335-6845455 ( 78) AAACAAAA 1 chrX:15303749-15303869 ( 102) AAACAAAA 1 chr3R:15293103-15293223 ( 55) AAACAAAA 1 chr3L:11547698-11547818 ( 95) AAACAAAA 1 chr2R:18327209-18327329 ( 101) AAACAAAA 1 chrX:1271172-1271292 ( 103) AAACAAAA 1 chrX:11503795-11503915 ( 46) AAACAAAA 1 chrX:11658320-11658440 ( 53) AAACAAAA 1 chrX:12757219-12757339 ( 82) AAACAAAA 1 chr3L:3768761-3768881 ( 65) AAACAAAA 1 chr3R:29935868-29935988 ( 1) CAACAAAA 1 chr3L:2423733-2423853 ( 29) CAACAAAA 1 chr3L:8076335-8076455 ( 77) CAACAAAA 1 chr3R:8893184-8893304 ( 22) AAACGAAA 1 chr2R:10045498-10045618 ( 12) AAACGAAA 1 chr2R:23429169-23429289 ( 15) CAACAAAA 1 chr2R:22586932-22587052 ( 112) CAACAAAA 1 chrX:3772863-3772983 ( 56) AAACGAAA 1 chr3R:9593508-9593628 ( 67) CAACAAAA 1 chr3R:11456693-11456813 ( 17) CAACAAAA 1 chrX:11817225-11817345 ( 81) AAACGAAA 1 chr3R:15474548-15474668 ( 9) AAACGAAA 1 chr3R:21581354-21581474 ( 16) CAACAAAA 1 chr3R:26117454-26117574 ( 5) AAAAAAAA 1 chr2R:17457975-17458095 ( 96) AAAAAAAA 1 chr3L:13282171-13282291 ( 47) AAAAAAAA 1 chrX:19148100-19148220 ( 103) AAAAAAAA 1 chr3L:3050329-3050449 ( 37) AAAAAAAA 1 chrX:7710588-7710708 ( 56) AAAAAAAA 1 chr2R:22809316-22809436 ( 25) AAAAAAAA 1 chr3L:5172586-5172706 ( 72) AAAAAAAA 1 chrX:13964962-13965082 ( 103) AAAAAAAA 1 chrX:9578933-9579053 ( 76) AAAAAAAA 1 chrX:13972530-13972650 ( 20) AAAAAAAA 1 chrX:10723964-10724084 ( 1) AAAAAAAA 1 chr3L:20113015-20113135 ( 18) AAAAAAAA 1 chr3L:3539416-3539536 ( 94) AAAAAAAA 1 chr3R:9222531-9222651 ( 72) AAAAAAAA 1 chrX:15619921-15620041 ( 12) AAAAAAAA 1 chrX:3667333-3667453 ( 2) AAAAAAAA 1 chr2L:16539120-16539240 ( 5) AAAAAAAA 1 chrX:11524023-11524143 ( 99) AAAAAAAA 1 chr3L:21097534-21097654 ( 78) AAAAAAAA 1 chr2R:10778094-10778214 ( 59) CAACGAAA 1 chr2L:9692525-9692645 ( 31) CAACGAAA 1 chr3L:9107070-9107190 ( 22) CAACGAAA 1 chr2R:16179299-16179419 ( 66) CAAAAAAA 1 chrX:2742217-2742337 ( 93) AAAAGAAA 1 chr2R:11098358-11098478 ( 86) AAAAGAAA 1 chr2R:21250432-21250552 ( 85) AAAAGAAA 1 chr3R:22097006-22097126 ( 10) CAAAAAAA 1 chrX:15308685-15308805 ( 52) AAAAGAAA 1 chrX:22839754-22839874 ( 43) AAAAGAAA 1 chr3L:18783601-18783721 ( 89) AAAAGAAA 1 chr2L:5463182-5463302 ( 5) CAAAAAAA 1 chrX:8170561-8170681 ( 9) CAAAAAAA 1 chrX:10727453-10727573 ( 32) CAAAAAAA 1 chrX:7317943-7318063 ( 70) AAAAGAAA 1 chr2R:10549974-10550094 ( 100) AAAAGAAA 1 chr2R:23797865-23797985 ( 73) CAAAAAAA 1 chr2L:16040329-16040449 ( 79) AAATAAAA 1 chrX:18479851-18479971 ( 108) AAATAAAA 1 chr3R:21586147-21586267 ( 34) AAGCAAAA 1 chr2R:18314828-18314948 ( 68) AAACAAAG 1 chr2R:17580707-17580827 ( 7) AAATAAAA 1 chrX:13243600-13243720 ( 107) AAATAAAA 1 chr2L:18153202-18153322 ( 22) AAGCAAAA 1 chrX:12750353-12750473 ( 6) AAATAAAA 1 chrX:10556360-10556480 ( 74) AAATAAAA 1 chr3L:16709789-16709909 ( 100) AAATAAAA 1 chr2L:16641024-16641144 ( 54) AAATAAAA 1 chr3R:22543151-22543271 ( 56) AAATAAAA 1 chr3L:2805310-2805430 ( 21) AAATAAAA 1 chr2L:11963569-11963689 ( 6) AAATAAAA 1 chrX:11083150-11083270 ( 93) AAGCAAAA 1 chrX:3446791-3446911 ( 4) AAATAAAA 1 chr2L:12271405-12271525 ( 57) AAATAAAA 1 chr3R:9933571-9933691 ( 27) CAAAGAAA 1 chrX:13746989-13747109 ( 45) CAAAGAAA 1 chr3L:564095-564215 ( 29) CAAAGAAA 1 chr3R:26248259-26248379 ( 109) CAAAGAAA 1 chrX:10087817-10087937 ( 37) AAATGAAA 1 chrX:8258217-8258337 ( 51) CAACAAAG 1 chrX:11485194-11485314 ( 94) AAACGAAG 1 chr2L:8203865-8203985 ( 13) AAATGAAA 1 chr3L:2817964-2818084 ( 109) CAACAAAG 1 chr2R:4271827-4271947 ( 45) CAACAAAG 1 chr2L:13411737-13411857 ( 37) AAGCGAAA 1 chrX:15546635-15546755 ( 105) CAATAAAA 1 chr2L:8603941-8604061 ( 96) CAGCAAAA 1 chr2R:11630353-11630473 ( 90) AAACGAAG 1 chrX:13817890-13818010 ( 3) AAATGAAA 1 chr3R:25735824-25735944 ( 9) AAAAAAAG 1 chr3R:14736885-14737005 ( 59) AAGAAAAA 1 chr3L:22830403-22830523 ( 101) AAGAAAAA 1 chr3R:22550224-22550344 ( 54) AAGAAAAA 1 chrX:11373399-11373519 ( 9) AAAAAAAG 1 chr2L:9547458-9547578 ( 109) AAAAAAAG 1 chr3L:12075100-12075220 ( 78) CAGCGAAA 1 chr3R:20328372-20328492 ( 27) CAATGAAA 1 chrX:8231941-8232061 ( 79) CAAAAAAG 1 chrX:13747799-13747919 ( 10) CAGAAAAA 1 chr2L:7557496-7557616 ( 14) CAAAAAAG 1 chrX:13277936-13278056 ( 95) AAACAAGA 1 chrX:20657135-20657255 ( 5) AAATAAAG 1 chr3R:16277171-16277291 ( 84) AAGCAAAG 1 chr2L:16537155-16537275 ( 69) AAGTGAAA 1 chrX:6641735-6641855 ( 11) AAGTGAAA 1 chr2L:10802387-10802507 ( 36) AAAAAAGA 1 chrX:11156300-11156420 ( 25) CAGTAAAA 1 chr3R:22816570-22816690 ( 28) AAATGAAG 1 chr2R:13550411-13550531 ( 19) CAATAAAG 1 chrX:8410537-8410657 ( 97) AAAAGAGA 1 chr3R:5694593-5694713 ( 10) CAAAAAGA 1 chr3R:17807334-17807454 ( 16) AAAAGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.08287 E= 8.2e-021 121 55 -1369 -1369 164 -1369 -1369 -1369 148 -1369 -70 -1369 27 129 -1369 -86 123 -1369 53 -1369 164 -1369 -1369 -1369 159 -1369 -219 -1369 147 -1369 -61 -1369 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 132 E= 8.2e-021 0.742424 0.257576 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.893939 0.000000 0.106061 0.000000 0.386364 0.431818 0.000000 0.181818 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.962121 0.000000 0.037879 0.000000 0.886364 0.000000 0.113636 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAMAAAA MEME-2 regular expression -------------------------------------------------------------------------------- [AC]AA[CA][AG]AAA -------------------------------------------------------------------------------- Time 13.58 secs. ******************************************************************************** ******************************************************************************** MOTIF GCNGCDGC MEME-3 width = 8 sites = 53 llr = 440 E-value = 3.9e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCNGCDGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::32:2:1 pos.-specific C :a2:8118 probability G a:28239: matrix T ::3::4:1 bits 2.5 ** 2.3 ** * 2.0 ** * 1.8 ** * * Relative 1.5 ** ** * Entropy 1.3 ** ** ** (12.0 bits) 1.0 ** ** ** 0.8 ** ** ** 0.5 ** ** ** 0.3 ** ** ** 0.0 -------- Multilevel GCTGCTGC consensus AA G sequence G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCNGCDGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:11098358-11098478 44 8.45e-07 CAATCAGCTG GCGGCGGC TTCGATTCGT chrX:13840228-13840348 47 4.94e-06 AGCAAACACG GCTGCGGC ACAAAGCTCG chr2L:16538285-16538405 92 6.50e-06 ATAACAAGAT GCAGCGGC AGAAATAACA chrX:19165395-19165515 32 6.50e-06 gacTGAAGCA GCAGCGGC TGTTGGCGTA chr2L:8603941-8604061 107 6.50e-06 AGCAAAATGA GCAGCGGC AGCATG chr3L:2805513-2805633 2 1.12e-05 t gctgctgc agttgttgca chr3R:17706584-17706704 35 1.12e-05 GAAAAACGCC GCCGCTGC CATAAGAAAT chr3L:12118195-12118315 65 1.12e-05 TCGATATCGA GCTGCTGC CCATCTCTAG chrX:13754761-13754881 28 1.12e-05 tgttgttgct gctgctgc tgtttctgcG chrX:19148100-19148220 27 1.12e-05 tctttatttt GCCGCTGC TGCCTTACAC chr3R:13066765-13066885 66 1.12e-05 agttgtagtt gccgctgc tgttgttgtt chr3L:18766632-18766752 46 1.42e-05 TGTTGCCACT GCAGCTGC TTGGTTTAGT chrX:8410537-8410657 72 1.58e-05 AGAGCGAGTA GCGGCAGC GACAGCAACA chr2L:22148894-22149014 36 1.58e-05 TGCTGCTCTT GCGGCAGC ACTAGCTTTC chr3R:5019102-5019222 27 2.12e-05 TGGCTAATTT GCCGCAGC AGGCAATGGA chr2R:17457975-17458095 107 2.12e-05 AAAAAAATGT GCTGCAGC CATATT chr3L:515761-515881 20 2.66e-05 aacagcagca gcagcagc aAATAACTGC chrX:9578933-9579053 17 2.66e-05 TACGATTCTC GCTGCCGC TAGCGAAAAA chrX:1271172-1271292 12 2.82e-05 AAACAGAAAA GCAGCCGC GGAGCCAAAA chr3R:29935868-29935988 108 3.31e-05 TTGGCAGATT GCCGGGGC TGAAA chr3R:8893184-8893304 111 3.31e-05 TTGGCAAGAC GCTGGGGC GC chrX:13972530-13972650 3 3.31e-05 CA GCGGGTGC ATTACACCGA chr2L:11211529-11211649 94 3.62e-05 CAAGTGCAGC GCGACGGc ttcttcgtct chr2R:23797865-23797985 107 3.62e-05 cgcgacggcg gcgacggc gacgtc chr2R:11630353-11630473 18 4.08e-05 AAGAAGAACA GCTGGTGC TATTTGTTTT chr3L:18783601-18783721 107 5.13e-05 CACACACAGC GCGACTGC AATTCA chr3R:22097006-22097126 91 5.42e-05 CCAGCCGAGT GCAACGGC AAAAAGTGCA chrX:13746989-13747109 69 7.09e-05 CATGTGAAAT GCAACTGC ATAATACTAT chr3R:11456693-11456813 7 7.54e-05 GTACCC GCCGGAGC AACAACAAAA chr2R:11384139-11384259 84 8.67e-05 ACCAGGTGGA GCGGCGGA TATTGCATTT chrX:12498224-12498344 90 8.67e-05 TGTTATTGTT GCTGGCGC TTTATTTGCA chr3L:8076335-8076455 67 1.14e-04 TTATTCTTTA GCTGCGGA ATCAACAAAA chrX:8258217-8258337 20 1.14e-04 TTGGCCAAAT GCCACAGC ATAGCAACAA chr3L:22830403-22830523 82 1.30e-04 GCACCAGTTT GCAACAGC GAaaaaagaa chrX:11817225-11817345 35 1.30e-04 ttggcagtaa gcaacagc agcagaaaaa chrX:15077883-15078003 87 1.30e-04 TTGAACCCCT GCCACCGC ATCGATAATA chr3R:16154381-16154501 29 1.51e-04 AAACGAACTT GCTGCTGT TCTTTTTGCT chr2R:10778094-10778214 101 1.51e-04 AAATTCGTTG GCTGCTGT TTCAGCAAAA chr3R:22057938-22058058 83 1.51e-04 TTTAATGGTT GCTGCTGT TGGTGAGTCA chr3R:22550224-22550344 75 1.51e-04 TGGCTTATCT GCTGCTGT TAGCAGTTTT chrX:10727453-10727573 79 1.51e-04 GCGTTGATTT GCTGCTGT CAGCACTTTT chrX:13396078-13396198 51 1.66e-04 ATCGCCGATC GCTGCGCC CAAATAAGTA chrX:8231740-8231860 15 1.66e-04 CCTACAGCAG GCAGCTGA AAAATTTTAA chr3R:29223075-29223195 9 1.86e-04 TCCCGTTA GCAGCTCC GCAATATCAC chr2R:7989122-7989242 109 2.10e-04 AAGGTCAGCA GCGAGTGC GCGA chr3R:15293103-15293223 43 2.10e-04 TTTTTCGGTT GCCAGGGC AATAAAACAA chr3R:19158137-19158257 14 2.10e-04 ATGTATAATT GCTGCAGA GGTCAGAGGA chr2L:16539120-16539240 54 2.10e-04 TCAAACAACA GCGAGTGC AAAAAAAATT chrX:16718413-16718533 74 2.35e-04 CCCAGCCGAT GCAGCAGA ACGAAAATAA chrX:15546635-15546755 92 2.35e-04 GCAAAAAACG GCGGCACC AACAACAATA chr3L:10749783-10749903 8 2.35e-04 TTCTGTT GCTGCCGT TGCCCGTTGG chrX:3772863-3772983 71 2.50e-04 aaaaacacgc gcagccga aacgaagcgc chrX:15303749-15303869 78 2.60e-04 ACAAAAATGG GCAAGTGC aaaaaataaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCNGCDGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:11098358-11098478 8.4e-07 43_[+3]_69 chrX:13840228-13840348 4.9e-06 46_[+3]_66 chr2L:16538285-16538405 6.5e-06 91_[+3]_21 chrX:19165395-19165515 6.5e-06 31_[+3]_81 chr2L:8603941-8604061 6.5e-06 106_[+3]_6 chr3L:2805513-2805633 1.1e-05 1_[+3]_111 chr3R:17706584-17706704 1.1e-05 34_[+3]_78 chr3L:12118195-12118315 1.1e-05 64_[+3]_48 chrX:13754761-13754881 1.1e-05 27_[+3]_85 chrX:19148100-19148220 1.1e-05 26_[+3]_86 chr3R:13066765-13066885 1.1e-05 65_[+3]_47 chr3L:18766632-18766752 1.4e-05 45_[+3]_67 chrX:8410537-8410657 1.6e-05 71_[+3]_41 chr2L:22148894-22149014 1.6e-05 35_[+3]_77 chr3R:5019102-5019222 2.1e-05 26_[+3]_86 chr2R:17457975-17458095 2.1e-05 106_[+3]_6 chr3L:515761-515881 2.7e-05 19_[+3]_93 chrX:9578933-9579053 2.7e-05 16_[+3]_96 chrX:1271172-1271292 2.8e-05 11_[+3]_101 chr3R:29935868-29935988 3.3e-05 107_[+3]_5 chr3R:8893184-8893304 3.3e-05 110_[+3]_2 chrX:13972530-13972650 3.3e-05 2_[+3]_110 chr2L:11211529-11211649 3.6e-05 93_[+3]_19 chr2R:23797865-23797985 3.6e-05 106_[+3]_6 chr2R:11630353-11630473 4.1e-05 17_[+3]_95 chr3L:18783601-18783721 5.1e-05 106_[+3]_6 chr3R:22097006-22097126 5.4e-05 90_[+3]_22 chrX:13746989-13747109 7.1e-05 68_[+3]_44 chr3R:11456693-11456813 7.5e-05 6_[+3]_106 chr2R:11384139-11384259 8.7e-05 83_[+3]_29 chrX:12498224-12498344 8.7e-05 89_[+3]_23 chr3L:8076335-8076455 0.00011 66_[+3]_46 chrX:8258217-8258337 0.00011 19_[+3]_93 chr3L:22830403-22830523 0.00013 81_[+3]_31 chrX:11817225-11817345 0.00013 34_[+3]_78 chrX:15077883-15078003 0.00013 86_[+3]_26 chr3R:16154381-16154501 0.00015 28_[+3]_84 chr2R:10778094-10778214 0.00015 100_[+3]_12 chr3R:22057938-22058058 0.00015 82_[+3]_30 chr3R:22550224-22550344 0.00015 74_[+3]_38 chrX:10727453-10727573 0.00015 78_[+3]_34 chrX:13396078-13396198 0.00017 50_[+3]_62 chrX:8231740-8231860 0.00017 14_[+3]_98 chr3R:29223075-29223195 0.00019 8_[+3]_104 chr2R:7989122-7989242 0.00021 108_[+3]_4 chr3R:15293103-15293223 0.00021 42_[+3]_70 chr3R:19158137-19158257 0.00021 13_[+3]_99 chr2L:16539120-16539240 0.00021 53_[+3]_59 chrX:16718413-16718533 0.00023 73_[+3]_39 chrX:15546635-15546755 0.00023 91_[+3]_21 chr3L:10749783-10749903 0.00023 7_[+3]_105 chrX:3772863-3772983 0.00025 70_[+3]_42 chrX:15303749-15303869 0.00026 77_[+3]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCNGCDGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCNGCDGC width=8 seqs=53 chr2R:11098358-11098478 ( 44) GCGGCGGC 1 chrX:13840228-13840348 ( 47) GCTGCGGC 1 chr2L:16538285-16538405 ( 92) GCAGCGGC 1 chrX:19165395-19165515 ( 32) GCAGCGGC 1 chr2L:8603941-8604061 ( 107) GCAGCGGC 1 chr3L:2805513-2805633 ( 2) GCTGCTGC 1 chr3R:17706584-17706704 ( 35) GCCGCTGC 1 chr3L:12118195-12118315 ( 65) GCTGCTGC 1 chrX:13754761-13754881 ( 28) GCTGCTGC 1 chrX:19148100-19148220 ( 27) GCCGCTGC 1 chr3R:13066765-13066885 ( 66) GCCGCTGC 1 chr3L:18766632-18766752 ( 46) GCAGCTGC 1 chrX:8410537-8410657 ( 72) GCGGCAGC 1 chr2L:22148894-22149014 ( 36) GCGGCAGC 1 chr3R:5019102-5019222 ( 27) GCCGCAGC 1 chr2R:17457975-17458095 ( 107) GCTGCAGC 1 chr3L:515761-515881 ( 20) GCAGCAGC 1 chrX:9578933-9579053 ( 17) GCTGCCGC 1 chrX:1271172-1271292 ( 12) GCAGCCGC 1 chr3R:29935868-29935988 ( 108) GCCGGGGC 1 chr3R:8893184-8893304 ( 111) GCTGGGGC 1 chrX:13972530-13972650 ( 3) GCGGGTGC 1 chr2L:11211529-11211649 ( 94) GCGACGGC 1 chr2R:23797865-23797985 ( 107) GCGACGGC 1 chr2R:11630353-11630473 ( 18) GCTGGTGC 1 chr3L:18783601-18783721 ( 107) GCGACTGC 1 chr3R:22097006-22097126 ( 91) GCAACGGC 1 chrX:13746989-13747109 ( 69) GCAACTGC 1 chr3R:11456693-11456813 ( 7) GCCGGAGC 1 chr2R:11384139-11384259 ( 84) GCGGCGGA 1 chrX:12498224-12498344 ( 90) GCTGGCGC 1 chr3L:8076335-8076455 ( 67) GCTGCGGA 1 chrX:8258217-8258337 ( 20) GCCACAGC 1 chr3L:22830403-22830523 ( 82) GCAACAGC 1 chrX:11817225-11817345 ( 35) GCAACAGC 1 chrX:15077883-15078003 ( 87) GCCACCGC 1 chr3R:16154381-16154501 ( 29) GCTGCTGT 1 chr2R:10778094-10778214 ( 101) GCTGCTGT 1 chr3R:22057938-22058058 ( 83) GCTGCTGT 1 chr3R:22550224-22550344 ( 75) GCTGCTGT 1 chrX:10727453-10727573 ( 79) GCTGCTGT 1 chrX:13396078-13396198 ( 51) GCTGCGCC 1 chrX:8231740-8231860 ( 15) GCAGCTGA 1 chr3R:29223075-29223195 ( 9) GCAGCTCC 1 chr2R:7989122-7989242 ( 109) GCGAGTGC 1 chr3R:15293103-15293223 ( 43) GCCAGGGC 1 chr3R:19158137-19158257 ( 14) GCTGCAGA 1 chr2L:16539120-16539240 ( 54) GCGAGTGC 1 chrX:16718413-16718533 ( 74) GCAGCAGA 1 chrX:15546635-15546755 ( 92) GCGGCACC 1 chr3L:10749783-10749903 ( 8) GCTGCCGT 1 chrX:3772863-3772983 ( 71) GCAGCCGA 1 chrX:15303749-15303869 ( 78) GCAAGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCNGCDGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6976 E= 3.9e-011 -1237 -1237 253 -1237 -1237 250 -1237 -1237 -18 -5 26 4 -38 -1237 213 -1237 -1237 220 13 -1237 -50 -64 61 26 -1237 -164 245 -1237 -150 213 -1237 -155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCNGCDGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 3.9e-011 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.283019 0.169811 0.207547 0.339623 0.245283 0.000000 0.754717 0.000000 0.000000 0.811321 0.188679 0.000000 0.226415 0.113208 0.264151 0.396226 0.000000 0.056604 0.943396 0.000000 0.113208 0.773585 0.000000 0.113208 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCNGCDGC MEME-3 regular expression -------------------------------------------------------------------------------- GC[TAG][GA]C[TGA]GC -------------------------------------------------------------------------------- Time 19.41 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGGGSG MEME-4 width = 8 sites = 18 llr = 177 E-value = 2.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGGGSG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 312:::1: pos.-specific C ::2:1:3: probability G 776a9a6a matrix T 12:::::: bits 2.5 * * * 2.3 *** * 2.0 *** * 1.8 *** * Relative 1.5 *** * Entropy 1.3 * *** * (14.2 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGGGGGG consensus A C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGSG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21250432-21250552 63 8.02e-07 GTGAGAGAGG GGGGGGGG GTTGAAGTCA chr3R:17793448-17793568 18 8.02e-07 Aggggggggg gggggggg AAGGGAAAAC chr2R:23797865-23797985 58 8.02e-07 CCCACCTTCT GGGGGGGG AAGAACACAA chr3L:2805310-2805430 31 3.92e-06 aaataaaaaa aGGGGGGG AACTGCTCGG chr3L:22830403-22830523 37 4.75e-06 TGGTATTCTG GGCGGGCG GCTCCACCGT chr2L:9692525-9692645 62 6.23e-06 TGAAACTGAG GGAGGGGG GAAAAAAAGA chr3L:3768761-3768881 78 6.23e-06 CAAAAGAAAT GGAGGGGG TATCCAAAAG chrX:6641735-6641855 26 9.28e-06 AAACCACTAT AGGGGGCG AGCAAAAGGT chrX:10106888-10107008 105 1.08e-05 GCTTGTCATA GGGGGGAG ACtttttt chr3R:29223075-29223195 102 1.68e-05 TTGGGTTTAT GTGGGGCG CCCTTTGAAG chrX:7317943-7318063 45 2.23e-05 AGGGGTGGCA GTCGGGGG GTTGCGGATG chrX:8410537-8410657 56 2.53e-05 AGTGAGAGCA GGCGGGAG AGCGAGTAGC chrX:4616067-4616187 14 2.61e-05 tgtgtgcgta ggggcgcg tgtttgtgtc chr3L:2423733-2423853 47 3.04e-05 GACGGCTCGC AGAGGGGG AAAAAACGGC chrX:13396078-13396198 77 3.32e-05 TACGCAGCCC ATGGGGGG TATACATGGG chrX:20657135-20657255 36 3.91e-05 CATACGTTGA TGGGGGCG TCGTCGCCGC chrX:15619921-15620041 27 4.27e-05 aaaaaaaaaa aaGGGGGG CTCGTTCAGT chr3R:7076715-7076835 60 4.99e-05 GATGTCGGAT GACGGGCG TCATTGTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGSG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21250432-21250552 8e-07 62_[+4]_50 chr3R:17793448-17793568 8e-07 17_[+4]_95 chr2R:23797865-23797985 8e-07 57_[+4]_55 chr3L:2805310-2805430 3.9e-06 30_[+4]_82 chr3L:22830403-22830523 4.7e-06 36_[+4]_76 chr2L:9692525-9692645 6.2e-06 61_[+4]_51 chr3L:3768761-3768881 6.2e-06 77_[+4]_35 chrX:6641735-6641855 9.3e-06 25_[+4]_87 chrX:10106888-10107008 1.1e-05 104_[+4]_8 chr3R:29223075-29223195 1.7e-05 101_[+4]_11 chrX:7317943-7318063 2.2e-05 44_[+4]_68 chrX:8410537-8410657 2.5e-05 55_[+4]_57 chrX:4616067-4616187 2.6e-05 13_[+4]_99 chr3L:2423733-2423853 3e-05 46_[+4]_66 chrX:13396078-13396198 3.3e-05 76_[+4]_36 chrX:20657135-20657255 3.9e-05 35_[+4]_77 chrX:15619921-15620041 4.3e-05 26_[+4]_86 chr3R:7076715-7076835 5e-05 59_[+4]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGSG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGGGSG width=8 seqs=18 chr2R:21250432-21250552 ( 63) GGGGGGGG 1 chr3R:17793448-17793568 ( 18) GGGGGGGG 1 chr2R:23797865-23797985 ( 58) GGGGGGGG 1 chr3L:2805310-2805430 ( 31) AGGGGGGG 1 chr3L:22830403-22830523 ( 37) GGCGGGCG 1 chr2L:9692525-9692645 ( 62) GGAGGGGG 1 chr3L:3768761-3768881 ( 78) GGAGGGGG 1 chrX:6641735-6641855 ( 26) AGGGGGCG 1 chrX:10106888-10107008 ( 105) GGGGGGAG 1 chr3R:29223075-29223195 ( 102) GTGGGGCG 1 chrX:7317943-7318063 ( 45) GTCGGGGG 1 chrX:8410537-8410657 ( 56) GGCGGGAG 1 chrX:4616067-4616187 ( 14) GGGGCGCG 1 chr3L:2423733-2423853 ( 47) AGAGGGGG 1 chrX:13396078-13396198 ( 77) ATGGGGGG 1 chrX:20657135-20657255 ( 36) TGGGGGCG 1 chrX:15619921-15620041 ( 27) AAGGGGGG 1 chr3R:7076715-7076835 ( 60) GACGGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGSG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4072 E= 2.0e+001 -20 -1081 195 -257 -152 -1081 206 -99 -94 33 182 -1081 -1081 -1081 253 -1081 -1081 -166 245 -1081 -1081 -1081 253 -1081 -152 92 168 -1081 -1081 -1081 253 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGSG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 2.0e+001 0.277778 0.000000 0.666667 0.055556 0.111111 0.000000 0.722222 0.166667 0.166667 0.222222 0.611111 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.055556 0.944444 0.000000 0.000000 0.000000 1.000000 0.000000 0.111111 0.333333 0.555556 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGSG MEME-4 regular expression -------------------------------------------------------------------------------- [GA]G[GC]GGG[GC]G -------------------------------------------------------------------------------- Time 25.14 secs. ******************************************************************************** ******************************************************************************** MOTIF RSCAAAAA MEME-5 width = 8 sites = 59 llr = 454 E-value = 4.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif RSCAAAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 4::7a7aa pos.-specific C 23a::3:: probability G 37:3:::: matrix T 1::::::: bits 2.5 * 2.3 * 2.0 * 1.8 * Relative 1.5 ** * ** Entropy 1.3 ** * ** (11.1 bits) 1.0 ******* 0.8 ******* 0.5 ******* 0.3 ******** 0.0 -------- Multilevel AGCAAAAA consensus GC G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSCAAAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:19126080-19126200 104 1.77e-05 TTTCCAAAAA GGCAAAAA GGTAAGCGA chr2R:18317400-18317520 89 1.77e-05 ACAAATAAAT GGCAAAAA ATAAAACGAC chrX:15546635-15546755 81 1.77e-05 AGTGCCAATA GGCAAAAA ACGGCGGCAC chrX:12757219-12757339 73 1.77e-05 ACTAAAAATT GGCAAAAA TAAACAAAAA chr2R:10778094-10778214 2 2.74e-05 C GGCAACAA CACCGAGCAC chr3L:2423733-2423853 95 6.96e-05 atgaaaatat agcaaaaa tggtgatggt chr2R:22586932-22587052 5 6.96e-05 gcat gGCGAAAA ATGAAACTTG chr3R:22097006-22097126 21 6.96e-05 AAAAAAAGTG AGCAAAAA GACGAGCGAA chr2L:9692525-9692645 88 6.96e-05 GACGCGAAAA AGCAAAAA ATTAAAACGA chrX:11524023-11524143 80 6.96e-05 CGCATGGCAG AGCaaaaa gaaaaaacca chr2L:16538285-16538405 75 9.29e-05 ttgttCGACG AGCAACAA TAACAAGATG chrX:8258217-8258337 30 9.29e-05 GCCACAGCAT AGCAACAA CTTGGGGGAT chrX:8231941-8232061 46 9.29e-05 gaaCGACGGC AGCAACAA TAAAGTGAAA chr2R:19164051-19164171 1 9.29e-05 . AGCAACAA GTGCCTAAAC chr2R:10045498-10045618 77 9.29e-05 GATATGCCCa agcaacaa gcgaacgcac chr2R:7256260-7256380 64 9.29e-05 TGAAATCGCC GGCGACAA TAACAATAAC chr3R:11456693-11456813 73 9.29e-05 AGAGCGAAAA AGCAACAA AACCAGAAAA chrX:16718413-16718533 46 9.29e-05 AAGCACCAAA AGCAACAA GAAAAAAAGG chr3R:9222531-9222651 46 9.29e-05 caaaaagaac agcaacaa ccaacaacaa chr3L:83063-83183 94 9.29e-05 TATTTTGCTG AGCAACAA CGCCAGAGTC chr2R:13550411-13550531 29 9.29e-05 CAATAAAGTA AGCAACAA TAAAGTATTT chr3R:26117454-26117574 45 1.29e-04 aaataaTAGC AGCGAAAA AAAGGCAGAA chr2R:11098358-11098478 74 1.29e-04 TATCAGAGCG GCCAAAAA AGCCAAAAGA chr3L:13282171-13282291 16 1.29e-04 GCTTAAAACA AGCGAAAA ACAAACGAAG chrX:8060457-8060577 5 1.29e-04 TGCT AGCGAAAA TCAACTAGCG chr3L:22830403-22830523 112 1.29e-04 agaaaaaaga agcgaaaa a chrX:9578933-9579053 26 1.29e-04 CGCTGCCGCT AGCGAAAA AAGAAAACGC chrX:22839754-22839874 29 1.29e-04 ACTGAATGGG GCCAAAAA AGGGGAAAAA chr2L:13411737-13411857 109 1.29e-04 TTTGTCGCAT GCCAAAAA TGTA chrX:1271172-1271292 23 1.29e-04 CAGCCGCGGA GCCAAAAA CAAATTTAAT chrX:17694355-17694475 18 1.47e-04 AGGCAATTAG CGCAAAAA AAACGCACGA chr3L:18783601-18783721 61 1.47e-04 cgtcTTTTTG CGCaaaaa gaaaaatata chr3L:11220488-11220608 13 1.66e-04 TACACAATCG GCCAACAA ATAAGAGCAA chr3L:3768761-3768881 1 1.66e-04 . GCCAACAA AAAGTTTTGT chrX:16780319-16780439 7 2.19e-04 ccgaaa accaaaaa aaaaaaaaaa chr2R:18314828-18314948 28 2.19e-04 GGAAAAAAGT GCCGAAAA AGAGAGCGCA chr3R:9593508-9593628 16 2.19e-04 AAATATTCCC ACCAAAAA AGTTGATATA chrX:7873472-7873592 51 2.19e-04 CACGGAAGGC GCCGAAAA TATACCACAA chr3R:30751008-30751128 55 2.19e-04 CCATGAATAA GCCGAAAA TGCTGGAGTA chr2L:16539120-16539240 23 2.19e-04 GAGGGGAAAT GCCGAAAA AGTCAAGCAG chr3R:22543151-22543271 96 2.52e-04 AAAGACACGT GCCGACAA GTTGTCAAGT chr3R:10311530-10311650 56 2.76e-04 TACGTCCGAG CGCGACAA AGCCCCGATA chr2L:5463182-5463302 102 2.94e-04 CATGGATAAG CCCAAAAA TATTATTCAT chrX:17625920-17626040 96 2.94e-04 ATCTTTACTG CCCAAAAA CGCCTCTTAA chrX:10727453-10727573 11 2.94e-04 TAAACCGAAA CCCaaaaa tgaaataaaa chr2L:414252-414372 113 2.94e-04 GGGCGTTTTG CCCAAAAA chr3R:5019102-5019222 56 3.38e-04 ATTGTTGATG TGCAAAAA TTTTGCTGCG chr2L:6012542-6012662 105 3.38e-04 AGCCAAAGAG ACCGACAA TGACAATA chrX:4151104-4151224 18 3.38e-04 ACTATGCAAA TGCAAAAA CGGTCTCCAC chr3R:16154381-16154501 81 3.38e-04 caaacaagct tgcaaaaa aaaaaaaaat chr3L:5172586-5172706 90 3.38e-04 TTGCGTCATT TGCAAAAA ATTTCACGCT chr3L:21097534-21097654 67 3.38e-04 CAAAACTCAG TGCAAAAA ATAAAAAAAA chr2L:19472394-19472514 112 3.38e-04 CACTGTCTTA TGCAAAAA G chr2L:12271405-12271525 32 3.38e-04 CTCCTAGAAC TGCAAAAA TTGTACAAAT chr3R:17631298-17631418 102 3.48e-04 TTTTATCAAC CCCAACAA CGTAAAAATG chr2L:7557496-7557616 61 3.76e-04 CTTTTGCATG CCCGAAAA TATTTTGTGT chr3R:13722613-13722733 36 3.95e-04 CACGTTTGCT TGCGAAAA GCGATTCGAC chrX:6641735-6641855 34 5.30e-04 ATAGGGGGCG AGCAAAAG GTGTAGAGGA chr3L:515761-515881 7 5.42e-04 GTAAAA agcaacag cagcagcagc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSCAAAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:19126080-19126200 1.8e-05 103_[+5]_9 chr2R:18317400-18317520 1.8e-05 88_[+5]_24 chrX:15546635-15546755 1.8e-05 80_[+5]_32 chrX:12757219-12757339 1.8e-05 72_[+5]_40 chr2R:10778094-10778214 2.7e-05 1_[+5]_111 chr3L:2423733-2423853 7e-05 94_[+5]_18 chr2R:22586932-22587052 7e-05 4_[+5]_108 chr3R:22097006-22097126 7e-05 20_[+5]_92 chr2L:9692525-9692645 7e-05 87_[+5]_25 chrX:11524023-11524143 7e-05 79_[+5]_33 chr2L:16538285-16538405 9.3e-05 74_[+5]_38 chrX:8258217-8258337 9.3e-05 29_[+5]_83 chrX:8231941-8232061 9.3e-05 45_[+5]_67 chr2R:19164051-19164171 9.3e-05 [+5]_112 chr2R:10045498-10045618 9.3e-05 76_[+5]_36 chr2R:7256260-7256380 9.3e-05 63_[+5]_49 chr3R:11456693-11456813 9.3e-05 72_[+5]_40 chrX:16718413-16718533 9.3e-05 45_[+5]_67 chr3R:9222531-9222651 9.3e-05 45_[+5]_67 chr3L:83063-83183 9.3e-05 93_[+5]_19 chr2R:13550411-13550531 9.3e-05 28_[+5]_84 chr3R:26117454-26117574 0.00013 44_[+5]_68 chr2R:11098358-11098478 0.00013 73_[+5]_39 chr3L:13282171-13282291 0.00013 15_[+5]_97 chrX:8060457-8060577 0.00013 4_[+5]_108 chr3L:22830403-22830523 0.00013 111_[+5]_1 chrX:9578933-9579053 0.00013 25_[+5]_87 chrX:22839754-22839874 0.00013 28_[+5]_84 chr2L:13411737-13411857 0.00013 108_[+5]_4 chrX:1271172-1271292 0.00013 22_[+5]_90 chrX:17694355-17694475 0.00015 17_[+5]_95 chr3L:18783601-18783721 0.00015 60_[+5]_52 chr3L:11220488-11220608 0.00017 12_[+5]_100 chr3L:3768761-3768881 0.00017 [+5]_112 chrX:16780319-16780439 0.00022 6_[+5]_106 chr2R:18314828-18314948 0.00022 27_[+5]_85 chr3R:9593508-9593628 0.00022 15_[+5]_97 chrX:7873472-7873592 0.00022 50_[+5]_62 chr3R:30751008-30751128 0.00022 54_[+5]_58 chr2L:16539120-16539240 0.00022 22_[+5]_90 chr3R:22543151-22543271 0.00025 95_[+5]_17 chr3R:10311530-10311650 0.00028 55_[+5]_57 chr2L:5463182-5463302 0.00029 101_[+5]_11 chrX:17625920-17626040 0.00029 95_[+5]_17 chrX:10727453-10727573 0.00029 10_[+5]_102 chr2L:414252-414372 0.00029 112_[+5] chr3R:5019102-5019222 0.00034 55_[+5]_57 chr2L:6012542-6012662 0.00034 104_[+5]_8 chrX:4151104-4151224 0.00034 17_[+5]_95 chr3R:16154381-16154501 0.00034 80_[+5]_32 chr3L:5172586-5172706 0.00034 89_[+5]_23 chr3L:21097534-21097654 0.00034 66_[+5]_46 chr2L:19472394-19472514 0.00034 111_[+5]_1 chr2L:12271405-12271525 0.00034 31_[+5]_81 chr3R:17631298-17631418 0.00035 101_[+5]_11 chr2L:7557496-7557616 0.00038 60_[+5]_52 chr3R:13722613-13722733 0.00039 35_[+5]_77 chrX:6641735-6641855 0.00053 33_[+5]_79 chr3L:515761-515881 0.00054 6_[+5]_106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSCAAAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RSCAAAAA width=8 seqs=59 chr2R:19126080-19126200 ( 104) GGCAAAAA 1 chr2R:18317400-18317520 ( 89) GGCAAAAA 1 chrX:15546635-15546755 ( 81) GGCAAAAA 1 chrX:12757219-12757339 ( 73) GGCAAAAA 1 chr2R:10778094-10778214 ( 2) GGCAACAA 1 chr3L:2423733-2423853 ( 95) AGCAAAAA 1 chr2R:22586932-22587052 ( 5) GGCGAAAA 1 chr3R:22097006-22097126 ( 21) AGCAAAAA 1 chr2L:9692525-9692645 ( 88) AGCAAAAA 1 chrX:11524023-11524143 ( 80) AGCAAAAA 1 chr2L:16538285-16538405 ( 75) AGCAACAA 1 chrX:8258217-8258337 ( 30) AGCAACAA 1 chrX:8231941-8232061 ( 46) AGCAACAA 1 chr2R:19164051-19164171 ( 1) AGCAACAA 1 chr2R:10045498-10045618 ( 77) AGCAACAA 1 chr2R:7256260-7256380 ( 64) GGCGACAA 1 chr3R:11456693-11456813 ( 73) AGCAACAA 1 chrX:16718413-16718533 ( 46) AGCAACAA 1 chr3R:9222531-9222651 ( 46) AGCAACAA 1 chr3L:83063-83183 ( 94) AGCAACAA 1 chr2R:13550411-13550531 ( 29) AGCAACAA 1 chr3R:26117454-26117574 ( 45) AGCGAAAA 1 chr2R:11098358-11098478 ( 74) GCCAAAAA 1 chr3L:13282171-13282291 ( 16) AGCGAAAA 1 chrX:8060457-8060577 ( 5) AGCGAAAA 1 chr3L:22830403-22830523 ( 112) AGCGAAAA 1 chrX:9578933-9579053 ( 26) AGCGAAAA 1 chrX:22839754-22839874 ( 29) GCCAAAAA 1 chr2L:13411737-13411857 ( 109) GCCAAAAA 1 chrX:1271172-1271292 ( 23) GCCAAAAA 1 chrX:17694355-17694475 ( 18) CGCAAAAA 1 chr3L:18783601-18783721 ( 61) CGCAAAAA 1 chr3L:11220488-11220608 ( 13) GCCAACAA 1 chr3L:3768761-3768881 ( 1) GCCAACAA 1 chrX:16780319-16780439 ( 7) ACCAAAAA 1 chr2R:18314828-18314948 ( 28) GCCGAAAA 1 chr3R:9593508-9593628 ( 16) ACCAAAAA 1 chrX:7873472-7873592 ( 51) GCCGAAAA 1 chr3R:30751008-30751128 ( 55) GCCGAAAA 1 chr2L:16539120-16539240 ( 23) GCCGAAAA 1 chr3R:22543151-22543271 ( 96) GCCGACAA 1 chr3R:10311530-10311650 ( 56) CGCGACAA 1 chr2L:5463182-5463302 ( 102) CCCAAAAA 1 chrX:17625920-17626040 ( 96) CCCAAAAA 1 chrX:10727453-10727573 ( 11) CCCAAAAA 1 chr2L:414252-414372 ( 113) CCCAAAAA 1 chr3R:5019102-5019222 ( 56) TGCAAAAA 1 chr2L:6012542-6012662 ( 105) ACCGACAA 1 chrX:4151104-4151224 ( 18) TGCAAAAA 1 chr3R:16154381-16154501 ( 81) TGCAAAAA 1 chr3L:5172586-5172706 ( 90) TGCAAAAA 1 chr3L:21097534-21097654 ( 67) TGCAAAAA 1 chr2L:19472394-19472514 ( 112) TGCAAAAA 1 chr2L:12271405-12271525 ( 32) TGCAAAAA 1 chr3R:17631298-17631418 ( 102) CCCAACAA 1 chr2L:7557496-7557616 ( 61) CCCGAAAA 1 chr3R:13722613-13722733 ( 36) TGCGAAAA 1 chrX:6641735-6641855 ( 34) AGCAAAAG 1 chr3L:515761-515881 ( 7) AGCAACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSCAAAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.55909 E= 4.2e+001 35 -21 82 -129 -1253 94 193 -1253 -1253 250 -1253 -1253 119 -1253 65 -1253 164 -1253 -1253 -1253 108 87 -1253 -1253 164 -1253 -1253 -1253 159 -1253 -235 -1253 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSCAAAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 4.2e+001 0.406780 0.152542 0.305085 0.135593 0.000000 0.338983 0.661017 0.000000 0.000000 1.000000 0.000000 0.000000 0.728814 0.000000 0.271186 0.000000 1.000000 0.000000 0.000000 0.000000 0.677966 0.322034 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.966102 0.000000 0.033898 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RSCAAAAA MEME-5 regular expression -------------------------------------------------------------------------------- [AG][GC]C[AG]A[AC]AA -------------------------------------------------------------------------------- Time 30.89 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16144335-16144455 4.13e-02 120 chrX:13285140-13285260 3.79e-01 120 chr3R:13722613-13722733 6.39e-02 55_[+1(7.53e-05)]_57 chr2R:23797865-23797985 7.15e-06 57_[+4(8.02e-07)]_32_[+3(3.62e-05)]_\ 1_[+3(3.62e-05)]_6 chr2L:12271405-12271525 1.71e-01 120 chr3L:3768761-3768881 7.97e-06 64_[+2(6.05e-05)]_5_[+4(6.23e-06)]_\ 35 chr3L:18766632-18766752 2.04e-02 45_[+3(1.42e-05)]_67 chr2L:19472394-19472514 3.30e-02 120 chrX:10125788-10125908 7.43e-01 120 chr3L:21097534-21097654 5.36e-02 120 chrX:12757219-12757339 8.83e-03 72_[+5(1.77e-05)]_1_[+2(6.05e-05)]_\ 31 chrX:11658320-11658440 3.62e-02 52_[+2(6.05e-05)]_60 chrX:13817890-13818010 1.40e-02 66_[+1(7.53e-05)]_46 chr3R:21581354-21581474 1.70e-03 13_[+5(9.29e-05)]_99 chrX:11524023-11524143 2.17e-02 79_[+5(6.96e-05)]_33 chr2L:16539120-16539240 8.62e-04 120 chr2R:10549974-10550094 2.21e-01 120 chr2R:11630353-11630473 5.14e-04 17_[+3(4.08e-05)]_95 chrX:7317943-7318063 1.21e-04 44_[+4(2.23e-05)]_68 chr2R:13550411-13550531 1.42e-01 28_[+5(9.29e-05)]_84 chr2L:414252-414372 2.88e-02 120 chrX:11503795-11503915 8.77e-02 45_[+2(6.05e-05)]_67 chr3L:9107070-9107190 1.47e-02 120 chr2L:9547458-9547578 5.44e-01 120 chr3R:13066765-13066885 7.61e-03 1_[+1(7.53e-05)]_56_[+3(1.12e-05)]_\ 34_[+1(7.53e-05)]_5 chrX:10727453-10727573 1.77e-03 120 chr3L:10749783-10749903 1.80e-02 111_[+1(7.53e-05)]_1 chrX:12498224-12498344 1.18e-02 19_[+1(7.53e-05)]_62_[+3(8.67e-05)]_\ 23 chrX:8170561-8170681 1.05e-01 120 chrX:3446791-3446911 2.46e-01 120 chr2L:8603941-8604061 5.33e-05 106_[+3(6.50e-06)]_6 chr3R:22816570-22816690 7.93e-02 52_[+1(7.53e-05)]_60 chr3L:83063-83183 8.01e-03 93_[+5(9.29e-05)]_19 chrX:1271172-1271292 3.26e-04 11_[+3(2.82e-05)]_83_[+2(6.05e-05)]_\ 10 chrX:3667333-3667453 1.41e-01 120 chrX:14501151-14501271 3.83e-01 120 chrX:10106888-10107008 3.52e-02 104_[+4(1.08e-05)]_8 chrX:15546635-15546755 3.89e-04 80_[+5(1.77e-05)]_32 chr3R:19158137-19158257 1.81e-01 120 chrX:11083150-11083270 8.69e-02 120 chr3R:24101578-24101698 3.02e-01 120 chr2R:18327209-18327329 7.03e-02 100_[+2(6.05e-05)]_12 chrX:4813871-4813991 3.81e-01 120 chr2R:16163792-16163912 2.60e-01 120 chr3L:11547698-11547818 4.22e-02 94_[+2(6.05e-05)]_18 chr3R:15293103-15293223 3.64e-04 7_[+1(7.53e-05)]_39_[+2(6.05e-05)]_\ 58 chrX:17625920-17626040 4.98e-01 120 chr3L:17967770-17967890 1.38e-01 62_[+1(7.53e-05)]_50 chrX:15619921-15620041 3.25e-05 26_[+4(4.27e-05)]_86 chrX:12964723-12964843 1.29e-01 120 chrX:11373399-11373519 1.62e-01 120 chr2L:7492599-7492719 9.71e-01 120 chrX:15303749-15303869 1.60e-04 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chrX:22839754-22839874 6.38e-04 120 chrX:9578933-9579053 3.64e-04 16_[+3(2.66e-05)]_96 chr3R:17631298-17631418 3.59e-01 120 chrX:13235113-13235233 4.61e-03 2_[+2(6.05e-05)]_56_[+1(7.53e-05)]_\ 46 chr3R:22057938-22058058 6.21e-02 120 chr3L:2275132-2275252 7.87e-01 120 chrX:13277936-13278056 2.55e-01 120 chr3L:22830403-22830523 3.46e-05 36_[+4(4.75e-06)]_76 chrX:7873472-7873592 8.21e-02 120 chr2L:7579165-7579285 2.11e-01 120 chr3R:11456693-11456813 1.11e-03 6_[+3(7.54e-05)]_58_[+5(9.29e-05)]_\ 40 chrX:12511407-12511527 7.89e-01 120 chr2R:4271827-4271947 1.65e-01 120 chr2R:21026341-21026461 1.39e-02 83_[+1(7.53e-05)]_29 chr3R:9593508-9593628 7.35e-02 120 chr2R:19126080-19126200 3.78e-03 21_[+1(7.53e-05)]_74_[+5(1.77e-05)]_\ 9 chr3R:7076715-7076835 1.77e-01 59_[+4(4.99e-05)]_53 chr3R:20328372-20328492 1.68e-01 120 chr2R:10778094-10778214 7.60e-04 1_[+5(2.74e-05)]_111 chr3L:9497398-9497518 3.25e-01 120 chrX:13964962-13965082 5.08e-02 120 chrX:510696-510816 8.21e-01 120 chr3R:19792489-19792609 3.23e-01 120 chr3L:5172586-5172706 4.90e-04 42_[+1(7.53e-05)]_8_[+1(7.53e-05)]_\ 1_[+5(1.77e-05)]_45 chr3R:25882704-25882824 1.46e-01 120 chr2R:7256260-7256380 1.63e-02 63_[+5(9.29e-05)]_49 chr3R:14736885-14737005 1.14e-01 120 chr2R:22809316-22809436 1.26e-01 120 chrX:2075980-2076100 9.77e-01 120 chrX:8259993-8260113 1.47e-01 120 chrX:10556360-10556480 3.06e-02 20_[+1(7.53e-05)]_7_[+1(7.53e-05)]_\ 43_[+1(7.53e-05)]_26 chrX:13735032-13735152 7.94e-01 120 chr3R:24846584-24846704 5.76e-02 104_[+1(7.53e-05)]_8 chr2R:19455671-19455791 8.21e-01 120 chr3R:16277171-16277291 3.62e-01 120 chr2R:11180830-11180950 3.80e-02 40_[+2(6.05e-05)]_72 chrX:5428510-5428630 1.69e-01 120 chrX:15308685-15308805 2.83e-01 120 chrX:3389964-3390084 7.61e-01 120 chr3R:25518456-25518576 7.82e-02 40_[+1(7.53e-05)]_72 chr3L:2817964-2818084 2.69e-04 106_[+5(2.74e-05)]_6 chr3L:11125976-11126096 8.60e-02 120 chrX:6641735-6641855 7.32e-03 25_[+4(9.28e-06)]_87 chrX:3772863-3772983 2.80e-03 120 chr3R:17807334-17807454 5.26e-02 120 chr3R:17793448-17793568 9.05e-05 8_[+4(8.02e-07)]_[+4(8.02e-07)]_7_\ [+2(6.05e-05)]_81 chrX:3361794-3361914 6.09e-01 120 chr3L:11220488-11220608 8.60e-03 28_[+2(6.05e-05)]_84 chr2L:16537155-16537275 7.31e-01 120 chrX:7710588-7710708 1.01e-01 120 chr3R:22097006-22097126 2.96e-04 20_[+5(6.96e-05)]_67_[+5(1.77e-05)]_\ 17 chrX:17588235-17588355 8.60e-01 120 chr2L:2131601-2131721 3.16e-01 120 chr2R:22586932-22587052 2.91e-03 4_[+5(6.96e-05)]_108 chr2L:8203865-8203985 1.77e-01 120 chr2R:21250432-21250552 1.52e-04 60_[+4(8.02e-07)]_52 chr3L:3050329-3050449 4.20e-02 120 chr2R:23429169-23429289 5.93e-03 12_[+5(9.29e-05)]_100 chr2R:9184543-9184663 9.53e-01 120 chrX:13838381-13838501 8.85e-01 120 chrX:17694355-17694475 2.33e-02 107_[+2(6.05e-05)]_5 chr3L:515761-515881 3.17e-04 13_[+3(2.66e-05)]_63_[+2(6.05e-05)]_\ 28 chrX:4590625-4590745 6.63e-01 120 chr2L:7557496-7557616 6.83e-02 120 chrX:8060457-8060577 1.12e-03 36_[+1(7.53e-05)]_76 chrX:19148100-19148220 9.29e-05 26_[+3(1.12e-05)]_86 chr2R:13014480-13014600 3.05e-02 120 chr3L:8869447-8869567 3.71e-02 120 chr2L:4915742-4915862 9.33e-01 120 chr3L:8775489-8775609 2.28e-01 50_[+1(7.53e-05)]_62 chr2L:3059308-3059428 4.94e-02 98_[+2(6.05e-05)]_14 chr3R:24079259-24079379 1.40e-01 104_[+1(7.53e-05)]_8 chrX:8521589-8521709 8.79e-01 120 chr3R:16154381-16154501 5.53e-04 56_[+2(6.05e-05)]_56 chrX:13747799-13747919 3.62e-01 120 chrX:12750353-12750473 7.00e-02 120 chr3L:19906284-19906404 4.10e-01 120 chr3R:30526688-30526808 2.18e-01 20_[+1(7.53e-05)]_92 chr3R:29139278-29139398 2.20e-01 120 chr2R:10045498-10045618 5.15e-03 76_[+5(9.29e-05)]_36 chr3L:13282171-13282291 9.55e-02 120 chr3R:10311530-10311650 2.06e-01 120 chrX:4658040-4658160 6.05e-01 120 chr2L:11211529-11211649 5.40e-04 55_[+2(6.05e-05)]_30_[+3(3.62e-05)]_\ 19 chrX:9163259-9163379 2.75e-02 120 chrX:4151104-4151224 9.56e-02 120 chr2R:19164051-19164171 6.54e-02 [+5(9.29e-05)]_112 chrX:20657135-20657255 8.48e-03 35_[+4(3.91e-05)]_77 chrX:11485194-11485314 3.06e-02 120 chrX:12905172-12905292 5.21e-01 120 chrX:8231941-8232061 4.07e-02 45_[+5(9.29e-05)]_67 chrX:8258217-8258337 1.74e-03 29_[+5(9.29e-05)]_11_[+5(2.74e-05)]_\ 64 chrX:5916240-5916360 2.74e-01 120 chr2L:18153202-18153322 2.39e-01 120 chrX:13746989-13747109 4.12e-02 68_[+3(7.09e-05)]_44 chr3R:8893184-8893304 4.79e-04 110_[+3(3.31e-05)]_2 chr2L:16538285-16538405 6.93e-05 74_[+5(9.29e-05)]_9_[+3(6.50e-06)]_\ 21 chr3R:5694593-5694713 4.80e-01 120 chr3L:8076335-8076455 1.37e-02 120 chrX:14914038-14914158 9.98e-01 120 chr2R:17457975-17458095 1.19e-02 106_[+3(2.12e-05)]_6 chrX:13243600-13243720 3.97e-01 120 chr3R:19167543-19167663 6.13e-02 120 chr3R:22635744-22635864 1.44e-01 15_[+1(7.53e-05)]_97 chr2R:14128699-14128819 6.88e-01 120 chrX:2196243-2196363 8.82e-01 120 chrX:4616067-4616187 4.66e-03 13_[+4(2.61e-05)]_99 chr2R:17580707-17580827 2.76e-01 120 chr3R:22046627-22046747 2.89e-01 120 chr2R:18314828-18314948 2.55e-03 120 chrX:16780319-16780439 1.29e-02 46_[+2(6.05e-05)]_66 chr2R:11098358-11098478 1.50e-05 43_[+3(8.45e-07)]_69 chr3R:24575898-24576018 3.27e-01 120 chr3L:2423733-2423853 4.54e-04 26_[+5(9.29e-05)]_12_[+4(3.04e-05)]_\ 40_[+5(6.96e-05)]_18 chr3L:21202972-21203092 8.93e-01 120 chr2L:6012542-6012662 1.68e-01 120 chrX:10087817-10087937 6.01e-01 120 chr2L:22148894-22149014 3.01e-02 35_[+3(1.58e-05)]_77 chr2R:7989122-7989242 1.27e-01 120 chrX:13754761-13754881 8.16e-03 24_[+3(1.12e-05)]_45_[+1(7.53e-05)]_\ 35 chrX:13396078-13396198 5.05e-04 14_[+2(6.05e-05)]_54_[+4(3.32e-05)]_\ 36 chrX:8410537-8410657 2.35e-04 30_[+3(2.66e-05)]_17_[+4(2.53e-05)]_\ 8_[+3(1.58e-05)]_41 chr3L:19044923-19045043 2.62e-02 120 chr3L:10678079-10678199 3.43e-01 120 chr3R:29935868-29935988 6.36e-03 107_[+3(3.31e-05)]_5 chr3R:9933571-9933691 1.53e-01 120 chr3L:881064-881184 1.40e-01 99_[+1(7.53e-05)]_13 chr3R:5019102-5019222 3.77e-03 26_[+3(2.12e-05)]_86 chr3L:13924080-13924200 4.69e-01 120 chrX:2742217-2742337 9.66e-02 120 chr3L:12118195-12118315 2.66e-03 64_[+3(1.12e-05)]_15_[+1(7.53e-05)]_\ 25 chr3R:29223075-29223195 1.31e-02 101_[+4(1.68e-05)]_11 chr3R:17706584-17706704 6.11e-04 34_[+3(1.12e-05)]_18_[+2(6.05e-05)]_\ 52 chr3L:2553149-2553269 4.58e-03 80_[+2(6.05e-05)]_14_[+1(7.53e-05)]_\ 10 chr3R:21586147-21586267 5.80e-02 120 chr3L:12075100-12075220 5.32e-04 73_[+3(8.67e-05)]_39 chr3L:8775699-8775819 3.79e-01 120 chr3R:20274675-20274795 7.16e-01 120 chr3R:14902113-14902233 8.59e-01 120 chr3R:25735824-25735944 2.64e-01 120 chr3R:24272327-24272447 7.64e-01 120 chrX:18479851-18479971 6.01e-01 120 chrX:13779851-13779971 8.43e-02 112_[+1(7.53e-05)] chr2R:11384139-11384259 1.17e-02 83_[+3(8.67e-05)]_29 chrX:13840228-13840348 7.91e-04 46_[+3(4.94e-06)]_66 chr2R:16179299-16179419 2.45e-02 120 chr2L:16040329-16040449 4.96e-01 120 chr3R:9783358-9783478 2.55e-01 120 chr3L:9361928-9362048 9.61e-01 120 chr3R:26117454-26117574 1.71e-02 120 chr2R:20270938-20271058 9.26e-01 120 chr3L:2805513-2805633 2.11e-03 1_[+3(1.12e-05)]_111 chr3R:5520718-5520838 7.61e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************