******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17568.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:19943264-19943384 1.0000 120 chrX:17709000-17709120 1.0000 120 chr3R:23924295-23924415 1.0000 120 chr3L:20405689-20405809 1.0000 120 chr2L:2216233-2216353 1.0000 120 chr2L:7772020-7772140 1.0000 120 chr2R:23633134-23633254 1.0000 120 chr3L:10357142-10357262 1.0000 120 chr3L:12830638-12830758 1.0000 120 chr2L:1735250-1735370 1.0000 120 chr3L:13084441-13084561 1.0000 120 chr3L:2147908-2148028 1.0000 120 chr3R:23876846-23876966 1.0000 120 chr2L:14396362-14396482 1.0000 120 chrX:13105349-13105469 1.0000 120 chrX:9163336-9163456 1.0000 120 chr3R:6426784-6426904 1.0000 120 chr3L:8314984-8315104 1.0000 120 chr3R:23740797-23740917 1.0000 120 chrX:11555170-11555290 1.0000 120 chr2L:14307621-14307741 1.0000 120 chr3L:8932033-8932153 1.0000 120 chr3L:483990-484110 1.0000 120 chr3L:2469773-2469893 1.0000 120 chr3R:5670010-5670130 1.0000 120 chr2L:16710226-16710346 1.0000 120 chr3R:5364402-5364522 1.0000 120 chr3R:9448624-9448744 1.0000 120 chr3L:1576143-1576263 1.0000 120 chrX:9158450-9158570 1.0000 120 chr3L:7757035-7757155 1.0000 120 chr3R:14481675-14481795 1.0000 120 chrX:6600041-6600161 1.0000 120 chr3L:15234257-15234377 1.0000 120 chr3R:17007489-17007609 1.0000 120 chr3L:11510753-11510873 1.0000 120 chr2R:9463916-9464036 1.0000 120 chr3R:8848645-8848765 1.0000 120 chr3R:28856400-28856520 1.0000 120 chr2R:9956939-9957059 1.0000 120 chr3R:13610295-13610415 1.0000 120 chrX:3751487-3751607 1.0000 120 chr2R:7952851-7952971 1.0000 120 chr2L:4794170-4794290 1.0000 120 chr2R:10480984-10481104 1.0000 120 chr3R:17965560-17965680 1.0000 120 chr2L:14398669-14398789 1.0000 120 chr3L:8101145-8101265 1.0000 120 chr2R:10079930-10080050 1.0000 120 chr3L:2388011-2388131 1.0000 120 chr2L:7215831-7215951 1.0000 120 chr2R:15897596-15897716 1.0000 120 chr4:558715-558835 1.0000 120 chrX:3465727-3465847 1.0000 120 chr3R:9530097-9530217 1.0000 120 chr2L:2964623-2964743 1.0000 120 chr2L:19166234-19166354 1.0000 120 chr3R:21629563-21629683 1.0000 120 chr3R:5287067-5287187 1.0000 120 chr2L:12457088-12457208 1.0000 120 chr2L:11221606-11221726 1.0000 120 chr2R:6190202-6190322 1.0000 120 chr3L:17625139-17625259 1.0000 120 chr2L:10754749-10754869 1.0000 120 chr2L:16714056-16714176 1.0000 120 chr3R:9918982-9919102 1.0000 120 chr3L:16431203-16431323 1.0000 120 chr3L:18632337-18632457 1.0000 120 chrX:311492-311612 1.0000 120 chr2L:3422768-3422888 1.0000 120 chr3R:11968714-11968834 1.0000 120 chr2L:3572780-3572900 1.0000 120 chrX:15640059-15640179 1.0000 120 chr3R:25544040-25544160 1.0000 120 chr2L:12506872-12506992 1.0000 120 chr2R:11641756-11641876 1.0000 120 chr3R:14027464-14027584 1.0000 120 chr3L:9767755-9767875 1.0000 120 chr3R:19571325-19571445 1.0000 120 chr2L:7571911-7572031 1.0000 120 chr3L:1168580-1168700 1.0000 120 chr2R:10212467-10212587 1.0000 120 chr3L:20396152-20396272 1.0000 120 chr3L:12718665-12718785 1.0000 120 chr3L:11004169-11004289 1.0000 120 chr3L:247844-247964 1.0000 120 chr2R:16221072-16221192 1.0000 120 chr3R:27136535-27136655 1.0000 120 chr2L:7038635-7038755 1.0000 120 chr2L:2909544-2909664 1.0000 120 chr3R:24139196-24139316 1.0000 120 chrX:5408977-5409097 1.0000 120 chr2L:19360182-19360302 1.0000 120 chr3R:21871788-21871908 1.0000 120 chr3L:17539065-17539185 1.0000 120 chr3L:6517088-6517208 1.0000 120 chr3L:15647972-15648092 1.0000 120 chr3L:16975005-16975125 1.0000 120 chr3L:5992432-5992552 1.0000 120 chr2L:16256163-16256283 1.0000 120 chr3R:9872140-9872260 1.0000 120 chr2R:17714538-17714658 1.0000 120 chrX:8115747-8115867 1.0000 120 chr3L:14986499-14986619 1.0000 120 chr2L:12348549-12348669 1.0000 120 chr3L:16543466-16543586 1.0000 120 chr2L:9495513-9495633 1.0000 120 chr3L:20507673-20507793 1.0000 120 chr3R:14041243-14041363 1.0000 120 chr2R:23747289-23747409 1.0000 120 chr3L:22458740-22458860 1.0000 120 chr2L:14616020-14616140 1.0000 120 chr3L:4461745-4461865 1.0000 120 chr4:276396-276516 1.0000 120 chr2R:16159171-16159291 1.0000 120 chr3L:20410939-20411059 1.0000 120 chr3R:5208086-5208206 1.0000 120 chrX:2663539-2663659 1.0000 120 chr2R:11045754-11045874 1.0000 120 chr3R:13434549-13434669 1.0000 120 chr2L:9010481-9010601 1.0000 120 chr2L:4031355-4031475 1.0000 120 chrX:656442-656562 1.0000 120 chr2L:7217143-7217263 1.0000 120 chr3R:21589577-21589697 1.0000 120 chr2L:8300876-8300996 1.0000 120 chr3L:20494101-20494221 1.0000 120 chr2L:128453-128573 1.0000 120 chr3L:12828734-12828854 1.0000 120 chrX:17301760-17301880 1.0000 120 chr3R:21636903-21637023 1.0000 120 chr2L:20935490-20935610 1.0000 120 chr3R:21163476-21163596 1.0000 120 chr2R:11426844-11426964 1.0000 120 chrX:13645157-13645277 1.0000 120 chr3L:14549358-14549478 1.0000 120 chr3L:18836807-18836927 1.0000 120 chr2L:8111188-8111308 1.0000 120 chr2R:16335886-16336006 1.0000 120 chr3R:5107065-5107185 1.0000 120 chr3L:17008827-17008947 1.0000 120 chr2L:18965722-18965842 1.0000 120 chr2L:9498927-9499047 1.0000 120 chr3L:3930915-3931035 1.0000 120 chr3L:1577715-1577835 1.0000 120 chr3R:19613077-19613197 1.0000 120 chr3L:7868950-7869070 1.0000 120 chrX:6720148-6720268 1.0000 120 chr2L:20390143-20390263 1.0000 120 chr2L:470019-470139 1.0000 120 chrX:8685606-8685726 1.0000 120 chr3R:17966138-17966258 1.0000 120 chr2R:19394799-19394919 1.0000 120 chr3R:21271317-21271437 1.0000 120 chr4:70278-70398 1.0000 120 chr2L:3397704-3397824 1.0000 120 chr2R:21848621-21848741 1.0000 120 chr2L:8285322-8285442 1.0000 120 chr3R:22631315-22631435 1.0000 120 chr3L:2439092-2439212 1.0000 120 chrX:13108529-13108649 1.0000 120 chr3R:5365154-5365274 1.0000 120 chr3R:31405380-31405500 1.0000 120 chr3L:14354589-14354709 1.0000 120 chr3L:18002237-18002357 1.0000 120 chr3R:13441820-13441940 1.0000 120 chr3R:9390344-9390464 1.0000 120 chr3L:9694672-9694792 1.0000 120 chr2L:12509602-12509722 1.0000 120 chr2R:17272608-17272728 1.0000 120 chr2L:10146849-10146969 1.0000 120 chr3R:9048863-9048983 1.0000 120 chr2R:13470234-13470354 1.0000 120 chr3L:1742026-1742146 1.0000 120 chr2L:12498624-12498744 1.0000 120 chr3L:14274779-14274899 1.0000 120 chr2L:8570613-8570733 1.0000 120 chr3R:16455939-16456059 1.0000 120 chr2L:5096410-5096530 1.0000 120 chr2R:14031179-14031299 1.0000 120 chr2L:20464500-20464620 1.0000 120 chr3L:12835676-12835796 1.0000 120 chrX:13322591-13322711 1.0000 120 chr2R:21082650-21082770 1.0000 120 chr3R:11173298-11173418 1.0000 120 chrX:3372795-3372915 1.0000 120 chr3R:10131115-10131235 1.0000 120 chrX:13820523-13820643 1.0000 120 chr3L:4355155-4355275 1.0000 120 chr2L:425684-425804 1.0000 120 chr3L:8315191-8315311 1.0000 120 chr3R:5571138-5571258 1.0000 120 chr4:167740-167860 1.0000 120 chr3L:1169735-1169855 1.0000 120 chr2L:10265233-10265353 1.0000 120 chr3L:18112935-18113055 1.0000 120 chr2L:1638029-1638149 1.0000 120 chr3L:20710613-20710733 1.0000 120 chr2L:4227700-4227820 1.0000 120 chr3L:2493777-2493897 1.0000 120 chr3L:15741956-15742076 1.0000 120 chr3L:17896077-17896197 1.0000 120 chr3R:17944030-17944150 1.0000 120 chr2L:4334127-4334247 1.0000 120 chr3R:5320750-5320870 1.0000 120 chr3L:14988437-14988557 1.0000 120 chr2L:7528218-7528338 1.0000 120 chr2L:1657224-1657344 1.0000 120 chr2L:20311183-20311303 1.0000 120 chr3R:28327225-28327345 1.0000 120 chrX:276200-276320 1.0000 120 chr3R:26876656-26876776 1.0000 120 chr3L:11248369-11248489 1.0000 120 chr3L:511055-511175 1.0000 120 chr3R:31603786-31603906 1.0000 120 chr2R:14314465-14314585 1.0000 120 chr2L:15324060-15324180 1.0000 120 chr2R:18497880-18498000 1.0000 120 chrX:362265-362385 1.0000 120 chr2L:18314058-18314178 1.0000 120 chrX:3869244-3869364 1.0000 120 chr2R:8051388-8051508 1.0000 120 chr3L:1546999-1547119 1.0000 120 chr3L:20769402-20769522 1.0000 120 chrX:15852949-15853069 1.0000 120 chr3R:26185380-26185500 1.0000 120 chr2R:16869365-16869485 1.0000 120 chr3R:11338419-11338539 1.0000 120 chr2R:12007870-12007990 1.0000 120 chr4:695264-695384 1.0000 120 chr2R:12729317-12729437 1.0000 120 chr3L:7866030-7866150 1.0000 120 chr3R:14748795-14748915 1.0000 120 chr3R:14744511-14744631 1.0000 120 chr2L:8010660-8010780 1.0000 120 chr2L:10497542-10497662 1.0000 120 chr3L:18179930-18180050 1.0000 120 chr3L:7859902-7860022 1.0000 120 chr3L:19496149-19496269 1.0000 120 chr3R:16285901-16286021 1.0000 120 chr3R:14513532-14513652 1.0000 120 chr2L:6536066-6536186 1.0000 120 chr3L:3141487-3141607 1.0000 120 chr3L:9692383-9692503 1.0000 120 chr2L:6792077-6792197 1.0000 120 chr3R:30465940-30466060 1.0000 120 chr2L:18981695-18981815 1.0000 120 chr3R:18928401-18928521 1.0000 120 chr2R:22403186-22403306 1.0000 120 chr2R:17027942-17028062 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG17568/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17568.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.312 C 0.192 G 0.191 T 0.305 Background letter frequencies (from file dataset with add-one prior applied): A 0.312 C 0.192 G 0.191 T 0.305 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF KTTTGTTT MEME-1 width = 8 sites = 60 llr = 503 E-value = 9.0e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif KTTTGTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::::::: pos.-specific C 1::::::: probability G 4:2:a:1: matrix T 4a8a:aaa bits 2.4 * 2.1 * 1.9 * 1.7 * *** * Relative 1.4 * ***** Entropy 1.2 ******* (12.1 bits) 1.0 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel GTTTGTTT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTGTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:18928401-18928521 41 2.94e-05 tgttgctgtt gtttgttT ACCGCCTGGA chr3R:16285901-16286021 60 2.94e-05 TTTAAGCACC GTTTGTTT TCTTTGATTG chrX:3869244-3869364 36 2.94e-05 TGTTATCTAT GTTTGTTT TCTTTACGGC chr2L:4334127-4334247 57 2.94e-05 GGCGTTGTTT GTTTGTTT GTTTGCTGGC chr3R:9048863-9048983 35 2.94e-05 TTGACGATGA GTTTGTTT ATATTGATAA chr3L:14354589-14354709 98 2.94e-05 GTCACTCGTC GTTTGTTT GTTGAGAAAA chr2L:3397704-3397824 61 2.94e-05 GGCAAACTCG GTTTGTTT GCTTGTTTGT chr2L:9498927-9499047 106 2.94e-05 CATATAATAG GTTTGTTT ATTGCCA chr3L:17008827-17008947 45 2.94e-05 TAGTGTAAAC GTTTGTTT AGTTTACAGC chr2L:8300876-8300996 103 2.94e-05 TGTTTGATTG GTTTGTTT ACACTAATTA chr3L:16543466-16543586 113 2.94e-05 GTTTACAGGT GTTTGTTT chr3R:21871788-21871908 58 2.94e-05 TGAGAGCCTC GTTTGTTT GCTAAGAAAT chr3R:27136535-27136655 40 2.94e-05 TACTGATTAG GTTTGTTT GCTTAGGCTG chr3L:247844-247964 63 2.94e-05 TCAAAATTTG GTTTGTTT ACATACTTTC chr2L:12457088-12457208 42 2.94e-05 TGTTCTGGGT GTTTGTTT ATGATTCTTA chr3R:17965560-17965680 32 2.94e-05 GGTtttgttt gtttgttt gttctgtttg chr2R:10480984-10481104 47 2.94e-05 ACACTTTTCC GTTTGTTT ACCCTGCGAT chr3R:14513532-14513652 16 7.63e-05 GAGAGGACAt ttttgttt tagttttcgt chr3L:12835676-12835796 100 7.63e-05 CCTGTGTCAT TTTTGTTT GTTGTGTTTT chr2L:8285322-8285442 9 7.63e-05 TGTACAGC ttttgttt ttatttattt chr4:70278-70398 54 7.63e-05 ACGCATATAT TTTTGTTT AGACTCTGTC chr2R:16335886-16336006 55 7.63e-05 TTCCAACTTT TTTTGTTT ACCCAAAGAG chrX:17301760-17301880 64 7.63e-05 ACCGAGCAAA TTTTGTTT TCAAACGTTA chr3R:13434549-13434669 24 7.63e-05 CCTTTTAGTT TTTTGTTT TTTTCTTCAC chr3L:20507673-20507793 18 7.63e-05 TTATTTTGGT TTTTGTTT TCCAATTTCC chr2L:16256163-16256283 40 7.63e-05 CGGCCATGTC TTTTGTTT ACTGTTTGCT chr3L:16975005-16975125 17 7.63e-05 tttatttgta ttttgttt atttgccttt chr3L:15647972-15648092 83 7.63e-05 ACCCGCCAGA TTTTGTTT AATTAATATT chrX:5408977-5409097 19 7.63e-05 gtattttttt ttttgttt tttATCAGAG chr3L:17625139-17625259 68 7.63e-05 TAGTCTAGCT TTTTGTTT ATGTACAAAT chr3L:8101145-8101265 71 7.63e-05 CATACAGCGA TTTTGTTT ACCAATGGGA chr3R:8848645-8848765 91 7.63e-05 GATGTTGAAG TTTTGTTT TGTTTTTTCA chr2L:14307621-14307741 112 7.63e-05 TCTATGCTAT TTTTGTTT G chr2L:1735250-1735370 37 7.63e-05 GGTCTGAGAA TTTTGTTT ATTTAGAATG chr3L:9694672-9694792 101 9.47e-05 GAATTTCCTA GTGTGTTT CTCAGTATAA chr2L:4031355-4031475 28 9.47e-05 CCCTTTCTCT GTGTGTTT TCCCATTTCG chr3L:1576143-1576263 1 9.47e-05 . GTGTGTTT CTGGACCAGC chr3R:6426784-6426904 107 9.47e-05 TTTTTTGGTG GTGTGTTT TTGGTA chrX:13105349-13105469 90 9.47e-05 ACTACTTAAG GTGTGTTT GCTTTTTTAA chr3R:5320750-5320870 2 1.24e-04 C CTTTGTTT GAATTTCGGC chr3L:17896077-17896197 105 1.24e-04 CAGCCAGCAC CTTTGTTT CATTTCGG chr2R:11045754-11045874 49 1.24e-04 ATGTAAAATT CTTTGTTT AAGTTTCATT chr2L:9495513-9495633 52 1.24e-04 TTTCTTGTTT CTTTGTTT CGTCGGATTT chr3R:14481675-14481795 80 1.24e-04 TGCTTACCCG CTTTGTTT TCAATGGAAA chr2L:18981695-18981815 79 2.02e-04 GCTGTGGAAG TTGTGTTT AGAGCAGCTA chr3L:18179930-18180050 103 2.02e-04 AGCGCATTTG ATTTGTTT ACCAAATAAG chr2R:18497880-18498000 73 2.02e-04 TTTTCTTAAT ATTTGTTT GGGTGCCGCC chr2L:12498624-12498744 2 2.02e-04 A ttgtgttt gctgctgttg chr2L:18965722-18965842 101 2.02e-04 TAATAAACTA ATTTGTTT ATTAAAAGGA chr3L:20410939-20411059 63 2.02e-04 GAAAGCTTGC TTGTGTTT GTGAGCCAAA chr3L:6517088-6517208 101 2.02e-04 TAGCTCTGAA ATTTGTTT AGATTGTAGC chr2L:14398669-14398789 44 2.02e-04 GTATGCAAAC ATTTGTTT TTCGTCGCCG chr2R:9463916-9464036 62 2.02e-04 CTCCTTGGCC ATTTGTTT CAACCATGAC chr3L:2147908-2148028 69 2.02e-04 TCCGTTGCTA ATTTGTTT ACCTGCGAGA chr2R:23747289-23747409 36 2.20e-04 CCCGAGCTGC CTGTGTTT GCACACTTGC chr2L:10754749-10754869 102 2.20e-04 CCGACTACTG CTGTGTTT GATTTGTGGG chr2R:17027942-17028062 16 2.38e-04 agtcagtcca gtTTGTGT GTATACATAT chr3L:18002237-18002357 49 2.68e-04 TGGTTTATCT ATGTGTTT GAGTATCTGT chr3R:14744511-14744631 52 2.98e-04 AACAGCCAGC TTTTGTGT TCATTGAGTC chr2L:16714056-16714176 57 2.98e-04 TTGATTTCCT TTTTGTGT GCTGGCTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTGTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:18928401-18928521 2.9e-05 40_[+1]_72 chr3R:16285901-16286021 2.9e-05 59_[+1]_53 chrX:3869244-3869364 2.9e-05 35_[+1]_77 chr2L:4334127-4334247 2.9e-05 56_[+1]_56 chr3R:9048863-9048983 2.9e-05 34_[+1]_78 chr3L:14354589-14354709 2.9e-05 97_[+1]_15 chr2L:3397704-3397824 2.9e-05 60_[+1]_52 chr2L:9498927-9499047 2.9e-05 105_[+1]_7 chr3L:17008827-17008947 2.9e-05 44_[+1]_68 chr2L:8300876-8300996 2.9e-05 102_[+1]_10 chr3L:16543466-16543586 2.9e-05 112_[+1] chr3R:21871788-21871908 2.9e-05 57_[+1]_55 chr3R:27136535-27136655 2.9e-05 39_[+1]_73 chr3L:247844-247964 2.9e-05 62_[+1]_50 chr2L:12457088-12457208 2.9e-05 41_[+1]_71 chr3R:17965560-17965680 2.9e-05 31_[+1]_81 chr2R:10480984-10481104 2.9e-05 46_[+1]_66 chr3R:14513532-14513652 7.6e-05 15_[+1]_97 chr3L:12835676-12835796 7.6e-05 99_[+1]_13 chr2L:8285322-8285442 7.6e-05 8_[+1]_104 chr4:70278-70398 7.6e-05 53_[+1]_59 chr2R:16335886-16336006 7.6e-05 54_[+1]_58 chrX:17301760-17301880 7.6e-05 63_[+1]_49 chr3R:13434549-13434669 7.6e-05 23_[+1]_89 chr3L:20507673-20507793 7.6e-05 17_[+1]_95 chr2L:16256163-16256283 7.6e-05 39_[+1]_73 chr3L:16975005-16975125 7.6e-05 16_[+1]_96 chr3L:15647972-15648092 7.6e-05 82_[+1]_30 chrX:5408977-5409097 7.6e-05 18_[+1]_94 chr3L:17625139-17625259 7.6e-05 67_[+1]_45 chr3L:8101145-8101265 7.6e-05 70_[+1]_42 chr3R:8848645-8848765 7.6e-05 90_[+1]_22 chr2L:14307621-14307741 7.6e-05 111_[+1]_1 chr2L:1735250-1735370 7.6e-05 36_[+1]_76 chr3L:9694672-9694792 9.5e-05 100_[+1]_12 chr2L:4031355-4031475 9.5e-05 27_[+1]_85 chr3L:1576143-1576263 9.5e-05 [+1]_112 chr3R:6426784-6426904 9.5e-05 106_[+1]_6 chrX:13105349-13105469 9.5e-05 89_[+1]_23 chr3R:5320750-5320870 0.00012 1_[+1]_111 chr3L:17896077-17896197 0.00012 104_[+1]_8 chr2R:11045754-11045874 0.00012 48_[+1]_64 chr2L:9495513-9495633 0.00012 51_[+1]_61 chr3R:14481675-14481795 0.00012 79_[+1]_33 chr2L:18981695-18981815 0.0002 78_[+1]_34 chr3L:18179930-18180050 0.0002 102_[+1]_10 chr2R:18497880-18498000 0.0002 72_[+1]_40 chr2L:12498624-12498744 0.0002 1_[+1]_111 chr2L:18965722-18965842 0.0002 100_[+1]_12 chr3L:20410939-20411059 0.0002 62_[+1]_50 chr3L:6517088-6517208 0.0002 100_[+1]_12 chr2L:14398669-14398789 0.0002 43_[+1]_69 chr2R:9463916-9464036 0.0002 61_[+1]_51 chr3L:2147908-2148028 0.0002 68_[+1]_44 chr2R:23747289-23747409 0.00022 35_[+1]_77 chr2L:10754749-10754869 0.00022 101_[+1]_11 chr2R:17027942-17028062 0.00024 15_[+1]_97 chr3L:18002237-18002357 0.00027 48_[+1]_64 chr3R:14744511-14744631 0.0003 51_[+1]_61 chr2L:16714056-16714176 0.0003 56_[+1]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTGTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KTTTGTTT width=8 seqs=60 chr3R:18928401-18928521 ( 41) GTTTGTTT 1 chr3R:16285901-16286021 ( 60) GTTTGTTT 1 chrX:3869244-3869364 ( 36) GTTTGTTT 1 chr2L:4334127-4334247 ( 57) GTTTGTTT 1 chr3R:9048863-9048983 ( 35) GTTTGTTT 1 chr3L:14354589-14354709 ( 98) GTTTGTTT 1 chr2L:3397704-3397824 ( 61) GTTTGTTT 1 chr2L:9498927-9499047 ( 106) GTTTGTTT 1 chr3L:17008827-17008947 ( 45) GTTTGTTT 1 chr2L:8300876-8300996 ( 103) GTTTGTTT 1 chr3L:16543466-16543586 ( 113) GTTTGTTT 1 chr3R:21871788-21871908 ( 58) GTTTGTTT 1 chr3R:27136535-27136655 ( 40) GTTTGTTT 1 chr3L:247844-247964 ( 63) GTTTGTTT 1 chr2L:12457088-12457208 ( 42) GTTTGTTT 1 chr3R:17965560-17965680 ( 32) GTTTGTTT 1 chr2R:10480984-10481104 ( 47) GTTTGTTT 1 chr3R:14513532-14513652 ( 16) TTTTGTTT 1 chr3L:12835676-12835796 ( 100) TTTTGTTT 1 chr2L:8285322-8285442 ( 9) TTTTGTTT 1 chr4:70278-70398 ( 54) TTTTGTTT 1 chr2R:16335886-16336006 ( 55) TTTTGTTT 1 chrX:17301760-17301880 ( 64) TTTTGTTT 1 chr3R:13434549-13434669 ( 24) TTTTGTTT 1 chr3L:20507673-20507793 ( 18) TTTTGTTT 1 chr2L:16256163-16256283 ( 40) TTTTGTTT 1 chr3L:16975005-16975125 ( 17) TTTTGTTT 1 chr3L:15647972-15648092 ( 83) TTTTGTTT 1 chrX:5408977-5409097 ( 19) TTTTGTTT 1 chr3L:17625139-17625259 ( 68) TTTTGTTT 1 chr3L:8101145-8101265 ( 71) TTTTGTTT 1 chr3R:8848645-8848765 ( 91) TTTTGTTT 1 chr2L:14307621-14307741 ( 112) TTTTGTTT 1 chr2L:1735250-1735370 ( 37) TTTTGTTT 1 chr3L:9694672-9694792 ( 101) GTGTGTTT 1 chr2L:4031355-4031475 ( 28) GTGTGTTT 1 chr3L:1576143-1576263 ( 1) GTGTGTTT 1 chr3R:6426784-6426904 ( 107) GTGTGTTT 1 chrX:13105349-13105469 ( 90) GTGTGTTT 1 chr3R:5320750-5320870 ( 2) CTTTGTTT 1 chr3L:17896077-17896197 ( 105) CTTTGTTT 1 chr2R:11045754-11045874 ( 49) CTTTGTTT 1 chr2L:9495513-9495633 ( 52) CTTTGTTT 1 chr3R:14481675-14481795 ( 80) CTTTGTTT 1 chr2L:18981695-18981815 ( 79) TTGTGTTT 1 chr3L:18179930-18180050 ( 103) ATTTGTTT 1 chr2R:18497880-18498000 ( 73) ATTTGTTT 1 chr2L:12498624-12498744 ( 2) TTGTGTTT 1 chr2L:18965722-18965842 ( 101) ATTTGTTT 1 chr3L:20410939-20411059 ( 63) TTGTGTTT 1 chr3L:6517088-6517208 ( 101) ATTTGTTT 1 chr2L:14398669-14398789 ( 44) ATTTGTTT 1 chr2R:9463916-9464036 ( 62) ATTTGTTT 1 chr3L:2147908-2148028 ( 69) ATTTGTTT 1 chr2R:23747289-23747409 ( 36) CTGTGTTT 1 chr2L:10754749-10754869 ( 102) CTGTGTTT 1 chr2R:17027942-17028062 ( 16) GTTTGTGT 1 chr3L:18002237-18002357 ( 49) ATGTGTTT 1 chr3R:14744511-14744631 ( 52) TTTTGTGT 1 chr2L:16714056-16714176 ( 57) TTTTGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTGTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1524 E= 9.0e-018 -123 -72 100 27 -1255 -1255 -1255 171 -1255 -1255 -6 142 -1255 -1255 -1255 171 -1255 -1255 239 -1255 -1255 -1255 -1255 171 -1255 -1255 -193 164 -1255 -1255 -1255 171 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTGTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 60 E= 9.0e-018 0.133333 0.116667 0.383333 0.366667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.183333 0.816667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.050000 0.950000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTGTTT MEME-1 regular expression -------------------------------------------------------------------------------- [GT]TTTGTTT -------------------------------------------------------------------------------- Time 7.50 secs. ******************************************************************************** ******************************************************************************** MOTIF HAAACAAA MEME-2 width = 8 sites = 74 llr = 580 E-value = 2.2e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif HAAACAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 38aa:a7a pos.-specific C 32::a:2: probability G ::::::1: matrix T 4::::::: bits 2.4 * 2.1 * 1.9 * 1.7 **** * Relative 1.4 **** * Entropy 1.2 **** * (11.3 bits) 1.0 ***** * 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel TAAACAAA consensus CC C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HAAACAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:7859902-7860022 12 3.40e-05 ACGTGAAATG CAAACAAA AAGCTGGAAA chr2L:18314058-18314178 50 3.40e-05 CCAGGGCAAA CAAACAAA CAAAAGATAC chr3L:17896077-17896197 70 3.40e-05 ATGCGTTGAG CAAACAAA ATATGATCCG chr3L:4355155-4355275 102 3.40e-05 TGTGCTTAGT CAAACAAA AATTGTTTGG chr2L:20390143-20390263 84 3.40e-05 aacagacaaa caaacaaa caaacCCTCG chrX:13645157-13645277 67 3.40e-05 AATTTACCAA CAAACAAA GCAACAACAC chr2L:14616020-14616140 57 3.40e-05 TACAAAATCC CAAACAAA AACAAACCGT chr2R:23747289-23747409 106 3.40e-05 TTGACTTGTT CAAACAAA TGTATTT chr3R:9530097-9530217 25 3.40e-05 GCTAAACAAA CAAACAAA CAGCCAGGGC chr3R:5364402-5364522 20 3.40e-05 AACAGAGAAG CAAACAAA AAACATAGGG chr2L:16710226-16710346 5 3.40e-05 ACAA CAAACAAA TGACATCACA chr3R:6426784-6426904 73 3.40e-05 AAATGTTTTG CAAACAAA TTATTTTTCT chr2R:17027942-17028062 99 8.80e-05 TTTATTTAGG TAAACAAA CAGTGAGATC chr3L:19496149-19496269 80 8.80e-05 CTCAATGCGG TAAACAAA ATTTAAGAGT chr3R:14748795-14748915 83 8.80e-05 ATACAGTGCG TAAACAAA TAAAAACAAA chr2L:15324060-15324180 81 8.80e-05 ATGCGGACTA TAAACAAA TATTGGCTCG chr3L:15741956-15742076 47 8.80e-05 AACAAACAGA TAAACAAA CGAATGAAAC chr3R:9048863-9048983 72 8.80e-05 AGGAAAAACA TAAACAAA TCGGGGTCTT chr3R:19613077-19613197 78 8.80e-05 GTATGCTAGG TAAACAAA TAACTTCTGT chr3R:5208086-5208206 44 8.80e-05 TGTTGCCTGG TAAACAAA GCCGTTAGCG chr3L:20410939-20411059 109 8.80e-05 GTAACCATTT TAAACAAA TTGT chr3L:5992432-5992552 73 8.80e-05 AGCTAACAAA Taaacaaa cccaggcaca chr2L:19360182-19360302 91 8.80e-05 TAAATTGGCC TAAACAAA GGCCCTCGAG chr3R:24139196-24139316 68 8.80e-05 TGAGGAACTG TAAACAAA CAGATATGAC chr2L:7571911-7572031 102 8.80e-05 ACAAATTCTG TAAACAAA TTTGTCTTTT chr2L:12457088-12457208 102 8.80e-05 AACAAACGGG TAAACAAA AATAAAAGGT chr2R:9463916-9464036 3 8.80e-05 CA TAAACAAA TATTTGTGCT chr3L:7757035-7757155 1 8.80e-05 . TAAACAAA ACGTTTACTT chrX:11555170-11555290 94 8.80e-05 AAGCAACAAA TAAACAAA CTACTACACA chr2L:14396362-14396482 67 8.80e-05 aagtaaatta taaacaaa taaaaGCGGC chr3R:30465940-30466060 101 1.64e-04 AGGCGGCAGC AAAACAAA ATCAGTTCCA chrX:362265-362385 74 1.64e-04 AAACTGTCGA AAAACAAA CAGAGGAACA chrX:13820523-13820643 52 1.64e-04 ACAGTGGGAA CCAACAAA AGAAACAAAA chr3L:14354589-14354709 112 1.64e-04 GTTTGTTGAG AAAACAAA G chr3L:2439092-2439212 83 1.64e-04 aaaatcaaca aaaacaaa taaccgacaa chr3L:3930915-3931035 86 1.64e-04 CAGCATCTGT AAAACAAA ACATAAAGCA chr3R:21163476-21163596 87 1.64e-04 CGTAGAAGCA AAAACAAA GCAAATATAT chrX:656442-656562 57 1.64e-04 GGTTAGTCGG AAAACAAA TAAAAAGCCT chr2R:17714538-17714658 22 1.64e-04 ATATATATGA AAAACAAA TTCAAACGTA chr3L:9767755-9767875 2 1.64e-04 G AAAACAAA TATTTATGAT chr3L:18632337-18632457 93 1.64e-04 CTGGCATGCT AAAACAAA GGCTTGTCAT chr2R:6190202-6190322 46 1.64e-04 aacacaagca aaaacaaa tcaaaaagga chr3R:14481675-14481795 44 1.64e-04 ACTGTTGTAT CCAACAAA CTCGTGGTTG chr2L:18981695-18981815 17 1.85e-04 ATGGCCTGCG CAAACACA GGTATGTAAA chr3L:14988437-14988557 40 1.85e-04 GCACCTGTAG CAAACACA GCACAAATTT chr2L:8570613-8570733 43 1.85e-04 TAAACCAATA CAAACACA CTCCAAAGCT chr3R:9918982-9919102 24 1.85e-04 AAAACCTACA CAAACACA CACCTTTAGG chrX:17709000-17709120 105 1.85e-04 cgcacacgca caaacaca tgcaccca chr3L:9692383-9692503 6 2.18e-04 TATTA TCAACAAA AGTAATCAAG chr2R:16869365-16869485 4 2.18e-04 TTG TCAACAAA AAAGCGAAGC chr2R:14314465-14314585 50 2.18e-04 CCCAAATAAC TCAACAAA TATTTACGGA chr4:276396-276516 73 2.18e-04 TCCAAATTAA TCAACAAA TACATAAGCG chr3R:14027464-14027584 104 2.18e-04 AACGTCAAAG TCAACAAA GCGGGTCAA chr2L:10754749-10754869 4 2.18e-04 GGG TCAACAAA ACCTCTATTG chr3R:13441820-13441940 27 2.52e-04 CCATAAAGAT TAAACACA AGTGTAGTAA chr3L:11004169-11004289 113 2.52e-04 TGTACGTCCG TAAACACA chr3R:11338419-11338539 88 2.86e-04 AAATGAAGTG ACAACAAA AGTAGCCAGC chr2L:4334127-4334247 97 2.86e-04 AACACAGAAT ACAACAAA GAAGCCAAAG chr2L:10146849-10146969 51 2.86e-04 GCAACCGAAC ACAACAAA TTTATAGCCG chr2L:2909544-2909664 17 2.86e-04 TAGGCCAAGA ACAACAAA ATCGAACAAT chr2L:19166234-19166354 108 2.86e-04 ACAAACTACA ACAACAAA GCAGT chr2R:22403186-22403306 84 3.32e-04 CACACCAGAG CCAACACA CTGGAATGCA chr3R:5107065-5107185 10 3.32e-04 TGCCGGCTG AAAACACA AATGAGCACA chr3L:18836807-18836927 107 3.32e-04 ACAGAACAAT AAAACACA CAACAA chr2L:20935490-20935610 103 3.32e-04 cagatacaca ccaacaca gaggcacacT chr2L:128453-128573 97 3.32e-04 AAACCAGAAA CCAACACA ATGCGAAGCG chr3R:9448624-9448744 34 3.32e-04 CCAAAAAAAA AAAACACA CACCTAATTA chrX:3751487-3751607 73 3.53e-04 GAGATTGAAG TCAACACA AGGAACAACT chr3R:21629563-21629683 70 3.74e-04 CAAAGCGAAG CAAACAGA GAAAAAATAA chr3R:26876656-26876776 91 4.28e-04 TGAGTCCATA ACAACACA CGTAAGTTTG chr3L:12828734-12828854 113 4.28e-04 TTCATGTTTA TAAACAGA chr3L:1168580-1168700 22 4.28e-04 TGTAATTGCG TAAACAGA CTCGTACATA chr2L:2964623-2964743 35 4.28e-04 ACTGAATGAG TAAACAGA TAGAGGCGTT chr2R:12007870-12007990 69 4.74e-04 AGGCAGTGGA AAaacaga accaaaccga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HAAACAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7859902-7860022 3.4e-05 11_[+2]_101 chr2L:18314058-18314178 3.4e-05 49_[+2]_63 chr3L:17896077-17896197 3.4e-05 69_[+2]_43 chr3L:4355155-4355275 3.4e-05 101_[+2]_11 chr2L:20390143-20390263 3.4e-05 83_[+2]_29 chrX:13645157-13645277 3.4e-05 66_[+2]_46 chr2L:14616020-14616140 3.4e-05 56_[+2]_56 chr2R:23747289-23747409 3.4e-05 105_[+2]_7 chr3R:9530097-9530217 3.4e-05 24_[+2]_88 chr3R:5364402-5364522 3.4e-05 19_[+2]_93 chr2L:16710226-16710346 3.4e-05 4_[+2]_108 chr3R:6426784-6426904 3.4e-05 72_[+2]_40 chr2R:17027942-17028062 8.8e-05 98_[+2]_14 chr3L:19496149-19496269 8.8e-05 79_[+2]_33 chr3R:14748795-14748915 8.8e-05 82_[+2]_30 chr2L:15324060-15324180 8.8e-05 80_[+2]_32 chr3L:15741956-15742076 8.8e-05 46_[+2]_66 chr3R:9048863-9048983 8.8e-05 71_[+2]_41 chr3R:19613077-19613197 8.8e-05 77_[+2]_35 chr3R:5208086-5208206 8.8e-05 43_[+2]_69 chr3L:20410939-20411059 8.8e-05 108_[+2]_4 chr3L:5992432-5992552 8.8e-05 72_[+2]_40 chr2L:19360182-19360302 8.8e-05 90_[+2]_22 chr3R:24139196-24139316 8.8e-05 67_[+2]_45 chr2L:7571911-7572031 8.8e-05 101_[+2]_11 chr2L:12457088-12457208 8.8e-05 101_[+2]_11 chr2R:9463916-9464036 8.8e-05 2_[+2]_110 chr3L:7757035-7757155 8.8e-05 [+2]_112 chrX:11555170-11555290 8.8e-05 93_[+2]_19 chr2L:14396362-14396482 8.8e-05 66_[+2]_46 chr3R:30465940-30466060 0.00016 100_[+2]_12 chrX:362265-362385 0.00016 73_[+2]_39 chrX:13820523-13820643 0.00016 51_[+2]_61 chr3L:14354589-14354709 0.00016 111_[+2]_1 chr3L:2439092-2439212 0.00016 82_[+2]_30 chr3L:3930915-3931035 0.00016 85_[+2]_27 chr3R:21163476-21163596 0.00016 86_[+2]_26 chrX:656442-656562 0.00016 56_[+2]_56 chr2R:17714538-17714658 0.00016 21_[+2]_91 chr3L:9767755-9767875 0.00016 1_[+2]_111 chr3L:18632337-18632457 0.00016 92_[+2]_20 chr2R:6190202-6190322 0.00016 45_[+2]_67 chr3R:14481675-14481795 0.00016 43_[+2]_69 chr2L:18981695-18981815 0.00019 16_[+2]_96 chr3L:14988437-14988557 0.00019 39_[+2]_73 chr2L:8570613-8570733 0.00019 42_[+2]_70 chr3R:9918982-9919102 0.00019 23_[+2]_89 chrX:17709000-17709120 0.00019 104_[+2]_8 chr3L:9692383-9692503 0.00022 5_[+2]_107 chr2R:16869365-16869485 0.00022 3_[+2]_109 chr2R:14314465-14314585 0.00022 49_[+2]_63 chr4:276396-276516 0.00022 72_[+2]_40 chr3R:14027464-14027584 0.00022 103_[+2]_9 chr2L:10754749-10754869 0.00022 3_[+2]_109 chr3R:13441820-13441940 0.00025 26_[+2]_86 chr3L:11004169-11004289 0.00025 112_[+2] chr3R:11338419-11338539 0.00029 87_[+2]_25 chr2L:4334127-4334247 0.00029 96_[+2]_16 chr2L:10146849-10146969 0.00029 50_[+2]_62 chr2L:2909544-2909664 0.00029 16_[+2]_96 chr2L:19166234-19166354 0.00029 107_[+2]_5 chr2R:22403186-22403306 0.00033 83_[+2]_29 chr3R:5107065-5107185 0.00033 9_[+2]_103 chr3L:18836807-18836927 0.00033 106_[+2]_6 chr2L:20935490-20935610 0.00033 102_[+2]_10 chr2L:128453-128573 0.00033 96_[+2]_16 chr3R:9448624-9448744 0.00033 33_[+2]_79 chrX:3751487-3751607 0.00035 72_[+2]_40 chr3R:21629563-21629683 0.00037 69_[+2]_43 chr3R:26876656-26876776 0.00043 90_[+2]_22 chr3L:12828734-12828854 0.00043 112_[+2] chr3L:1168580-1168700 0.00043 21_[+2]_91 chr2L:2964623-2964743 0.00043 34_[+2]_78 chr2R:12007870-12007990 0.00047 68_[+2]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HAAACAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HAAACAAA width=8 seqs=74 chr3L:7859902-7860022 ( 12) CAAACAAA 1 chr2L:18314058-18314178 ( 50) CAAACAAA 1 chr3L:17896077-17896197 ( 70) CAAACAAA 1 chr3L:4355155-4355275 ( 102) CAAACAAA 1 chr2L:20390143-20390263 ( 84) CAAACAAA 1 chrX:13645157-13645277 ( 67) CAAACAAA 1 chr2L:14616020-14616140 ( 57) CAAACAAA 1 chr2R:23747289-23747409 ( 106) CAAACAAA 1 chr3R:9530097-9530217 ( 25) CAAACAAA 1 chr3R:5364402-5364522 ( 20) CAAACAAA 1 chr2L:16710226-16710346 ( 5) CAAACAAA 1 chr3R:6426784-6426904 ( 73) CAAACAAA 1 chr2R:17027942-17028062 ( 99) TAAACAAA 1 chr3L:19496149-19496269 ( 80) TAAACAAA 1 chr3R:14748795-14748915 ( 83) TAAACAAA 1 chr2L:15324060-15324180 ( 81) TAAACAAA 1 chr3L:15741956-15742076 ( 47) TAAACAAA 1 chr3R:9048863-9048983 ( 72) TAAACAAA 1 chr3R:19613077-19613197 ( 78) TAAACAAA 1 chr3R:5208086-5208206 ( 44) TAAACAAA 1 chr3L:20410939-20411059 ( 109) TAAACAAA 1 chr3L:5992432-5992552 ( 73) TAAACAAA 1 chr2L:19360182-19360302 ( 91) TAAACAAA 1 chr3R:24139196-24139316 ( 68) TAAACAAA 1 chr2L:7571911-7572031 ( 102) TAAACAAA 1 chr2L:12457088-12457208 ( 102) TAAACAAA 1 chr2R:9463916-9464036 ( 3) TAAACAAA 1 chr3L:7757035-7757155 ( 1) TAAACAAA 1 chrX:11555170-11555290 ( 94) TAAACAAA 1 chr2L:14396362-14396482 ( 67) TAAACAAA 1 chr3R:30465940-30466060 ( 101) AAAACAAA 1 chrX:362265-362385 ( 74) AAAACAAA 1 chrX:13820523-13820643 ( 52) CCAACAAA 1 chr3L:14354589-14354709 ( 112) AAAACAAA 1 chr3L:2439092-2439212 ( 83) AAAACAAA 1 chr3L:3930915-3931035 ( 86) AAAACAAA 1 chr3R:21163476-21163596 ( 87) AAAACAAA 1 chrX:656442-656562 ( 57) AAAACAAA 1 chr2R:17714538-17714658 ( 22) AAAACAAA 1 chr3L:9767755-9767875 ( 2) AAAACAAA 1 chr3L:18632337-18632457 ( 93) AAAACAAA 1 chr2R:6190202-6190322 ( 46) AAAACAAA 1 chr3R:14481675-14481795 ( 44) CCAACAAA 1 chr2L:18981695-18981815 ( 17) CAAACACA 1 chr3L:14988437-14988557 ( 40) CAAACACA 1 chr2L:8570613-8570733 ( 43) CAAACACA 1 chr3R:9918982-9919102 ( 24) CAAACACA 1 chrX:17709000-17709120 ( 105) CAAACACA 1 chr3L:9692383-9692503 ( 6) TCAACAAA 1 chr2R:16869365-16869485 ( 4) TCAACAAA 1 chr2R:14314465-14314585 ( 50) TCAACAAA 1 chr4:276396-276516 ( 73) TCAACAAA 1 chr3R:14027464-14027584 ( 104) TCAACAAA 1 chr2L:10754749-10754869 ( 4) TCAACAAA 1 chr3R:13441820-13441940 ( 27) TAAACACA 1 chr3L:11004169-11004289 ( 113) TAAACACA 1 chr3R:11338419-11338539 ( 88) ACAACAAA 1 chr2L:4334127-4334247 ( 97) ACAACAAA 1 chr2L:10146849-10146969 ( 51) ACAACAAA 1 chr2L:2909544-2909664 ( 17) ACAACAAA 1 chr2L:19166234-19166354 ( 108) ACAACAAA 1 chr2R:22403186-22403306 ( 84) CCAACACA 1 chr3R:5107065-5107185 ( 10) AAAACACA 1 chr3L:18836807-18836927 ( 107) AAAACACA 1 chr2L:20935490-20935610 ( 103) CCAACACA 1 chr2L:128453-128573 ( 97) CCAACACA 1 chr3R:9448624-9448744 ( 34) AAAACACA 1 chrX:3751487-3751607 ( 73) TCAACACA 1 chr3R:21629563-21629683 ( 70) CAAACAGA 1 chr3R:26876656-26876776 ( 91) ACAACACA 1 chr3L:12828734-12828854 ( 113) TAAACAGA 1 chr3L:1168580-1168700 ( 22) TAAACAGA 1 chr2L:2964623-2964743 ( 35) TAAACAGA 1 chr2R:12007870-12007990 ( 69) AAAACAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HAAACAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.99796 E= 2.2e-015 -14 70 -1285 41 128 34 -1285 -1285 168 -1285 -1285 -1285 168 -1285 -1285 -1285 -1285 238 -1285 -1285 168 -1285 -1285 -1285 122 8 -150 -1285 168 -1285 -1285 -1285 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HAAACAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 74 E= 2.2e-015 0.283784 0.310811 0.000000 0.405405 0.756757 0.243243 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.729730 0.202703 0.067568 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HAAACAAA MEME-2 regular expression -------------------------------------------------------------------------------- [TCA][AC]AACA[AC]A -------------------------------------------------------------------------------- Time 13.74 secs. ******************************************************************************** ******************************************************************************** MOTIF AAATATTT MEME-3 width = 8 sites = 38 llr = 331 E-value = 1.5e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAATATTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A a8a:a::: pos.-specific C :2:::::: probability G :::::::1 matrix T :::a:aa9 bits 2.4 2.1 1.9 1.7 * ***** Relative 1.4 * ***** Entropy 1.2 ******** (12.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAATATTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17027942-17028062 44 8.20e-05 TTATTCAATT AAATATTT GCGTTTAATT chr2R:22403186-22403306 53 8.20e-05 gaTATTAATC AAATATTT ATATTTACAT chr3L:7866030-7866150 52 8.20e-05 TCATGAGGGT AAATATTT ATAGTCGCCT chr2R:12729317-12729437 75 8.20e-05 ATATTTGCAT AAATATTT ACACAGACCA chr2R:12007870-12007990 31 8.20e-05 AAATGCCTCT AAATATTT GTAGACACTT chrX:3869244-3869364 105 8.20e-05 ATCCAGCTGT AAATATTT ATGGTCCG chr3L:511055-511175 82 8.20e-05 AAAAATATAC AAATATTT GCGTAAAAAT chr3L:15741956-15742076 9 8.20e-05 AGCTGGAC AAATATTT GATATTTAAT chr3L:18112935-18113055 83 8.20e-05 TTAATTTTGT AAATATTT AGATGTTTTT chr2L:425684-425804 67 8.20e-05 TGCAAAAGCC AAATATTT ATCAGCCTAG chr2R:13470234-13470354 3 8.20e-05 AC AAATATTT GTCTATCTTA chr2R:17272608-17272728 102 8.20e-05 GAATGTGAAC AAATATTT AGTGGAGTTG chr3L:9694672-9694792 69 8.20e-05 TTATAATTTT AAATATTT TCATTAATCA chr2L:3397704-3397824 40 8.20e-05 ACACGCCAGC AAATATTT ACTGGCAAAC chrX:8685606-8685726 69 8.20e-05 TATGACTGCC AAATATTT AACTCCAGTC chr3R:5208086-5208206 89 8.20e-05 AAAGCATAGT AAATATTT GAACCAGTGT chr3R:14041243-14041363 109 8.20e-05 AATTTATCTA AAATATTT TCAC chr2L:19360182-19360302 74 8.20e-05 GCAAATATGA AAATATTT AAATTGGCCT chr3L:11004169-11004289 2 8.20e-05 C AAATATTT GAGGTTGACT chr3L:20396152-20396272 57 8.20e-05 ACACATTTAT AAATATTT ACAATCTTGT chr2L:7571911-7572031 76 8.20e-05 ACACGTGTTT AAATATTT ATGCCTTGAC chr3R:9918982-9919102 85 8.20e-05 CGCCCAAGGT AAATATTT CCGCATTTGA chr2L:7215831-7215951 27 8.20e-05 CAAAATGTGT AAATATTT AAGCAAATAC chr3R:28856400-28856520 59 8.20e-05 TTTAATGTAC AAATATTT GGATTGAAGC chr3L:11510753-11510873 52 8.20e-05 GAACTATATT AAATATTT GCTATCAATA chr3R:5364402-5364522 73 8.20e-05 ACATTTAATA AAATATTT ACATATGATA chr3R:5670010-5670130 66 8.20e-05 ATTATTTGGA AAATATTT CCTTGCTCGA chr3L:1546999-1547119 19 1.32e-04 ACGGACATAT ACATATTT ATATATGAAC chr3L:20494101-20494221 11 1.32e-04 TATTATAAAT ACATATTT ACATATGAAG chr3L:4461745-4461865 104 1.32e-04 ATGGGTTGCT ACATATTT TAAATGTTA chrX:5408977-5409097 68 1.32e-04 TTTGCCGCTT ACATATTT GCTCATTCGG chr3L:1168580-1168700 35 1.32e-04 ACAGACTCGT ACATATTT TATTTTATAT chr3L:2388011-2388131 113 1.32e-04 CACGAACTGT ACATATTT chr2R:21082650-21082770 84 1.84e-04 GCCATAAATC AAATATTG GTTGAGTACG chr2L:12509602-12509722 75 1.84e-04 AAATAATAGC AAATATTG AACCATTGAT chr2L:470019-470139 103 1.84e-04 GGCCACGACA AAATATTG ATTGAAAATC chr2L:16714056-16714176 42 1.84e-04 TTTCAAGCGC AAATATTG ATTTCCTTTT chr3R:5287067-5287187 80 1.84e-04 GCAGTTGATC AAATATTG CTCTATTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17027942-17028062 8.2e-05 43_[+3]_69 chr2R:22403186-22403306 8.2e-05 52_[+3]_60 chr3L:7866030-7866150 8.2e-05 51_[+3]_61 chr2R:12729317-12729437 8.2e-05 74_[+3]_38 chr2R:12007870-12007990 8.2e-05 30_[+3]_82 chrX:3869244-3869364 8.2e-05 104_[+3]_8 chr3L:511055-511175 8.2e-05 81_[+3]_31 chr3L:15741956-15742076 8.2e-05 8_[+3]_104 chr3L:18112935-18113055 8.2e-05 82_[+3]_30 chr2L:425684-425804 8.2e-05 66_[+3]_46 chr2R:13470234-13470354 8.2e-05 2_[+3]_110 chr2R:17272608-17272728 8.2e-05 101_[+3]_11 chr3L:9694672-9694792 8.2e-05 68_[+3]_44 chr2L:3397704-3397824 8.2e-05 39_[+3]_73 chrX:8685606-8685726 8.2e-05 68_[+3]_44 chr3R:5208086-5208206 8.2e-05 88_[+3]_24 chr3R:14041243-14041363 8.2e-05 108_[+3]_4 chr2L:19360182-19360302 8.2e-05 73_[+3]_39 chr3L:11004169-11004289 8.2e-05 1_[+3]_111 chr3L:20396152-20396272 8.2e-05 56_[+3]_56 chr2L:7571911-7572031 8.2e-05 75_[+3]_37 chr3R:9918982-9919102 8.2e-05 84_[+3]_28 chr2L:7215831-7215951 8.2e-05 26_[+3]_86 chr3R:28856400-28856520 8.2e-05 58_[+3]_54 chr3L:11510753-11510873 8.2e-05 51_[+3]_61 chr3R:5364402-5364522 8.2e-05 72_[+3]_40 chr3R:5670010-5670130 8.2e-05 65_[+3]_47 chr3L:1546999-1547119 0.00013 18_[+3]_94 chr3L:20494101-20494221 0.00013 10_[+3]_102 chr3L:4461745-4461865 0.00013 103_[+3]_9 chrX:5408977-5409097 0.00013 67_[+3]_45 chr3L:1168580-1168700 0.00013 34_[+3]_78 chr3L:2388011-2388131 0.00013 112_[+3] chr2R:21082650-21082770 0.00018 83_[+3]_29 chr2L:12509602-12509722 0.00018 74_[+3]_38 chr2L:470019-470139 0.00018 102_[+3]_10 chr2L:16714056-16714176 0.00018 41_[+3]_71 chr3R:5287067-5287187 0.00018 79_[+3]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAATATTT width=8 seqs=38 chr2R:17027942-17028062 ( 44) AAATATTT 1 chr2R:22403186-22403306 ( 53) AAATATTT 1 chr3L:7866030-7866150 ( 52) AAATATTT 1 chr2R:12729317-12729437 ( 75) AAATATTT 1 chr2R:12007870-12007990 ( 31) AAATATTT 1 chrX:3869244-3869364 ( 105) AAATATTT 1 chr3L:511055-511175 ( 82) AAATATTT 1 chr3L:15741956-15742076 ( 9) AAATATTT 1 chr3L:18112935-18113055 ( 83) AAATATTT 1 chr2L:425684-425804 ( 67) AAATATTT 1 chr2R:13470234-13470354 ( 3) AAATATTT 1 chr2R:17272608-17272728 ( 102) AAATATTT 1 chr3L:9694672-9694792 ( 69) AAATATTT 1 chr2L:3397704-3397824 ( 40) AAATATTT 1 chrX:8685606-8685726 ( 69) AAATATTT 1 chr3R:5208086-5208206 ( 89) AAATATTT 1 chr3R:14041243-14041363 ( 109) AAATATTT 1 chr2L:19360182-19360302 ( 74) AAATATTT 1 chr3L:11004169-11004289 ( 2) AAATATTT 1 chr3L:20396152-20396272 ( 57) AAATATTT 1 chr2L:7571911-7572031 ( 76) AAATATTT 1 chr3R:9918982-9919102 ( 85) AAATATTT 1 chr2L:7215831-7215951 ( 27) AAATATTT 1 chr3R:28856400-28856520 ( 59) AAATATTT 1 chr3L:11510753-11510873 ( 52) AAATATTT 1 chr3R:5364402-5364522 ( 73) AAATATTT 1 chr3R:5670010-5670130 ( 66) AAATATTT 1 chr3L:1546999-1547119 ( 19) ACATATTT 1 chr3L:20494101-20494221 ( 11) ACATATTT 1 chr3L:4461745-4461865 ( 104) ACATATTT 1 chrX:5408977-5409097 ( 68) ACATATTT 1 chr3L:1168580-1168700 ( 35) ACATATTT 1 chr3L:2388011-2388131 ( 113) ACATATTT 1 chr2R:21082650-21082770 ( 84) AAATATTG 1 chr2L:12509602-12509722 ( 75) AAATATTG 1 chr2L:470019-470139 ( 103) AAATATTG 1 chr2L:16714056-16714176 ( 42) AAATATTG 1 chr3R:5287067-5287187 ( 80) AAATATTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.73116 E= 1.5e-004 168 -1189 -1189 -1189 143 -28 -1189 -1189 168 -1189 -1189 -1189 -1189 -1189 -1189 171 168 -1189 -1189 -1189 -1189 -1189 -1189 171 -1189 -1189 -1189 171 -1189 -1189 -54 151 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 1.5e-004 1.000000 0.000000 0.000000 0.000000 0.842105 0.157895 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.131579 0.868421 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTT MEME-3 regular expression -------------------------------------------------------------------------------- AAATATTT -------------------------------------------------------------------------------- Time 19.83 secs. ******************************************************************************** ******************************************************************************** MOTIF VVGGCAGC MEME-4 width = 8 sites = 25 llr = 228 E-value = 1.0e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif VVGGCAGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 22:1:a:: pos.-specific C 34:2a::a probability G 52a7::a: matrix T :2:::::: bits 2.4 * * ** 2.1 * * ** 1.9 * * ** 1.7 * * ** Relative 1.4 * **** Entropy 1.2 ****** (13.1 bits) 1.0 ****** 0.7 * ****** 0.5 * ****** 0.2 ******** 0.0 -------- Multilevel GCGGCAGC consensus CA C sequence AG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VVGGCAGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:30465940-30466060 93 2.94e-06 TATATTCGAG GCGGCAGC AAAACAAAAT chrX:6600041-6600161 6 2.94e-06 GAACA GCGGCAGC CCATTTTTTT chr2L:6536066-6536186 109 5.89e-06 CAATGCGACG CCGGCAGC GAAG chr3L:511055-511175 51 8.82e-06 CCGCAGTAAA GGGGCAGC CAAAGGGAGG chr2R:14031179-14031299 25 8.82e-06 AACAGCGAGT GGGGCAGC GGTGGAGCTT chr3L:7859902-7860022 110 2.13e-05 aTACCACGTG ACGGCAGC AAC chr2R:16869365-16869485 47 2.13e-05 CTCAGTTGAT CGGGCAGC TCGATAGAGG chr3L:13084441-13084561 46 2.13e-05 TAACTGCGCA ACGGCAGC TGCCACTGTT chr3R:23924295-23924415 82 2.13e-05 TTATCGATTA CGGGCAGC TCCACTTTCC chr4:695264-695384 52 2.43e-05 GAAGCGCGAT GCGCCAGC AGAAAATGAC chr2L:8300876-8300996 77 2.90e-05 GTTTATTCAC GTGGCAGC TGTATCTATG chr3L:15647972-15648092 15 2.90e-05 TCGAGTGACA GTGGCAGC GACAGAATCT chr2L:3422768-3422888 53 2.90e-05 AACGCTGCCC GTGGCAGC CGCGTTGTGC chrX:3869244-3869364 78 3.38e-05 TGGACTTTCC CAGGCAGC CATAAATCTA chrX:362265-362385 97 3.38e-05 GAACAAAGAG CAGGCAGC ATTTATATAC chr2R:21082650-21082770 13 4.91e-05 CTGACACGTA GGGCCAGC TGTAGCGCCT chr3R:17944030-17944150 25 5.69e-05 GCGAGAGCCG AAGGCAGC GTTTTAAGTT chr2L:2964623-2964743 97 5.69e-05 GCAGAATGAG AAGGCAGC TAGATGCGAA chr3L:1576143-1576263 106 5.69e-05 AAGGAAAACC AAGGCAGC AACGTTT chr2L:3397704-3397824 32 6.95e-05 AAGCTGGCAC ACGCCAGC AAATATTTAC chr3R:18928401-18928521 20 8.18e-05 tgtttttgtg gtgccagc tgttgttgct chrX:276200-276320 8 9.33e-05 CGGCAAC GCGGCGGC AGAAAGAGAG chr3L:17896077-17896197 95 9.33e-05 CCGTCGTCCA CAGCCAGC ACCTTTGTTT chr3L:483990-484110 2 9.33e-05 G GCgacagc caggcagaca chr2R:12007870-12007990 103 1.09e-04 ccaaactgaa ccgaCAGC AACAACTCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VVGGCAGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30465940-30466060 2.9e-06 92_[+4]_20 chrX:6600041-6600161 2.9e-06 5_[+4]_107 chr2L:6536066-6536186 5.9e-06 108_[+4]_4 chr3L:511055-511175 8.8e-06 50_[+4]_62 chr2R:14031179-14031299 8.8e-06 24_[+4]_88 chr3L:7859902-7860022 2.1e-05 109_[+4]_3 chr2R:16869365-16869485 2.1e-05 46_[+4]_66 chr3L:13084441-13084561 2.1e-05 45_[+4]_67 chr3R:23924295-23924415 2.1e-05 81_[+4]_31 chr4:695264-695384 2.4e-05 51_[+4]_61 chr2L:8300876-8300996 2.9e-05 76_[+4]_36 chr3L:15647972-15648092 2.9e-05 14_[+4]_98 chr2L:3422768-3422888 2.9e-05 52_[+4]_60 chrX:3869244-3869364 3.4e-05 77_[+4]_35 chrX:362265-362385 3.4e-05 96_[+4]_16 chr2R:21082650-21082770 4.9e-05 12_[+4]_100 chr3R:17944030-17944150 5.7e-05 24_[+4]_88 chr2L:2964623-2964743 5.7e-05 96_[+4]_16 chr3L:1576143-1576263 5.7e-05 105_[+4]_7 chr2L:3397704-3397824 7e-05 31_[+4]_81 chr3R:18928401-18928521 8.2e-05 19_[+4]_93 chrX:276200-276320 9.3e-05 7_[+4]_105 chr3L:17896077-17896197 9.3e-05 94_[+4]_18 chr3L:483990-484110 9.3e-05 1_[+4]_111 chr2R:12007870-12007990 0.00011 102_[+4]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VVGGCAGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF VVGGCAGC width=8 seqs=25 chr3R:30465940-30466060 ( 93) GCGGCAGC 1 chrX:6600041-6600161 ( 6) GCGGCAGC 1 chr2L:6536066-6536186 ( 109) CCGGCAGC 1 chr3L:511055-511175 ( 51) GGGGCAGC 1 chr2R:14031179-14031299 ( 25) GGGGCAGC 1 chr3L:7859902-7860022 ( 110) ACGGCAGC 1 chr2R:16869365-16869485 ( 47) CGGGCAGC 1 chr3L:13084441-13084561 ( 46) ACGGCAGC 1 chr3R:23924295-23924415 ( 82) CGGGCAGC 1 chr4:695264-695384 ( 52) GCGCCAGC 1 chr2L:8300876-8300996 ( 77) GTGGCAGC 1 chr3L:15647972-15648092 ( 15) GTGGCAGC 1 chr2L:3422768-3422888 ( 53) GTGGCAGC 1 chrX:3869244-3869364 ( 78) CAGGCAGC 1 chrX:362265-362385 ( 97) CAGGCAGC 1 chr2R:21082650-21082770 ( 13) GGGCCAGC 1 chr3R:17944030-17944150 ( 25) AAGGCAGC 1 chr2L:2964623-2964743 ( 97) AAGGCAGC 1 chr3L:1576143-1576263 ( 106) AAGGCAGC 1 chr2L:3397704-3397824 ( 32) ACGCCAGC 1 chr3R:18928401-18928521 ( 20) GTGCCAGC 1 chrX:276200-276320 ( 8) GCGGCGGC 1 chr3L:17896077-17896197 ( 95) CAGCCAGC 1 chr3L:483990-484110 ( 2) GCGACAGC 1 chr2R:12007870-12007990 ( 103) CCGACAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VVGGCAGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6312 E= 1.0e+002 -38 55 133 -1129 -38 106 7 -93 -1129 -1129 239 -1129 -196 6 191 -1129 -1129 238 -1129 -1129 162 -1129 -225 -1129 -1129 -1129 239 -1129 -1129 238 -1129 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VVGGCAGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 1.0e+002 0.240000 0.280000 0.480000 0.000000 0.240000 0.400000 0.200000 0.160000 0.000000 0.000000 1.000000 0.000000 0.080000 0.200000 0.720000 0.000000 0.000000 1.000000 0.000000 0.000000 0.960000 0.000000 0.040000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif VVGGCAGC MEME-4 regular expression -------------------------------------------------------------------------------- [GCA][CAG]G[GC]CAGC -------------------------------------------------------------------------------- Time 25.83 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGCCGGG MEME-5 width = 8 sites = 2 llr = 26 E-value = 2.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGCCGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::aa::: probability G :aa::aaa matrix T :::::::: bits 2.4 ******** 2.1 ******** 1.9 ******** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (19.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGGCCGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:7868950-7869070 110 1.80e-06 GTTTCCACCT CGGCCGGG AAA chr3R:21163476-21163596 32 1.80e-06 TCGTGCTTAT CGGCCGGG TATTATGACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7868950-7869070 1.8e-06 109_[+5]_3 chr3R:21163476-21163596 1.8e-06 31_[+5]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGCCGGG width=8 seqs=2 chr3L:7868950-7869070 ( 110) CGGCCGGG 1 chr3R:21163476-21163596 ( 32) CGGCCGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.5e+004 -765 238 -765 -765 -765 -765 238 -765 -765 -765 238 -765 -765 238 -765 -765 -765 238 -765 -765 -765 -765 238 -765 -765 -765 238 -765 -765 -765 238 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.5e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCCGGG MEME-5 regular expression -------------------------------------------------------------------------------- CGGCCGGG -------------------------------------------------------------------------------- Time 31.78 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:19943264-19943384 1.84e-01 120 chrX:17709000-17709120 1.07e-01 120 chr3R:23924295-23924415 8.59e-02 81_[+4(2.13e-05)]_31 chr3L:20405689-20405809 2.83e-01 120 chr2L:2216233-2216353 9.70e-01 120 chr2L:7772020-7772140 9.99e-01 120 chr2R:23633134-23633254 7.63e-01 120 chr3L:10357142-10357262 1.02e-01 68_[+5(6.26e-05)]_44 chr3L:12830638-12830758 6.72e-01 120 chr2L:1735250-1735370 3.03e-02 36_[+1(7.63e-05)]_76 chr3L:13084441-13084561 1.24e-01 45_[+4(2.13e-05)]_67 chr3L:2147908-2148028 3.80e-01 120 chr3R:23876846-23876966 5.32e-01 120 chr2L:14396362-14396482 2.79e-01 66_[+2(8.80e-05)]_46 chrX:13105349-13105469 1.44e-01 89_[+1(9.47e-05)]_23 chrX:9163336-9163456 7.59e-01 120 chr3R:6426784-6426904 3.91e-03 72_[+2(3.40e-05)]_26_[+1(9.47e-05)]_\ 6 chr3L:8314984-8315104 2.97e-01 120 chr3R:23740797-23740917 2.20e-01 120 chrX:11555170-11555290 9.01e-02 93_[+2(8.80e-05)]_19 chr2L:14307621-14307741 6.17e-02 111_[+1(7.63e-05)]_1 chr3L:8932033-8932153 4.20e-01 120 chr3L:483990-484110 3.90e-02 1_[+4(9.33e-05)]_111 chr3L:2469773-2469893 6.11e-01 120 chr3R:5670010-5670130 9.73e-02 65_[+3(8.20e-05)]_47 chr2L:16710226-16710346 3.17e-02 4_[+2(3.40e-05)]_108 chr3R:5364402-5364522 3.90e-03 19_[+2(3.40e-05)]_45_[+3(8.20e-05)]_\ 40 chr3R:9448624-9448744 2.79e-01 120 chr3L:1576143-1576263 9.59e-03 [+1(9.47e-05)]_97_[+4(5.69e-05)]_7 chrX:9158450-9158570 4.99e-01 120 chr3L:7757035-7757155 4.86e-02 [+2(8.80e-05)]_112 chr3R:14481675-14481795 6.00e-03 120 chrX:6600041-6600161 7.44e-03 5_[+4(2.94e-06)]_107 chr3L:15234257-15234377 8.07e-01 120 chr3R:17007489-17007609 2.55e-01 120 chr3L:11510753-11510873 1.98e-02 51_[+3(8.20e-05)]_61 chr2R:9463916-9464036 2.16e-03 7_[+3(8.20e-05)]_105 chr3R:8848645-8848765 1.62e-01 90_[+1(7.63e-05)]_22 chr3R:28856400-28856520 1.90e-01 58_[+3(8.20e-05)]_54 chr2R:9956939-9957059 4.13e-01 120 chr3R:13610295-13610415 7.27e-01 120 chrX:3751487-3751607 1.44e-01 120 chr2R:7952851-7952971 8.39e-01 120 chr2L:4794170-4794290 4.18e-01 120 chr2R:10480984-10481104 2.80e-02 46_[+1(2.94e-05)]_66 chr3R:17965560-17965680 6.88e-02 27_[+1(2.94e-05)]_85 chr2L:14398669-14398789 2.26e-01 120 chr3L:8101145-8101265 8.12e-02 70_[+1(7.63e-05)]_42 chr2R:10079930-10080050 9.22e-02 120 chr3L:2388011-2388131 4.36e-01 120 chr2L:7215831-7215951 2.30e-02 26_[+3(8.20e-05)]_86 chr2R:15897596-15897716 8.52e-01 120 chr4:558715-558835 9.63e-01 120 chrX:3465727-3465847 4.34e-01 120 chr3R:9530097-9530217 3.67e-02 20_[+2(3.40e-05)]_92 chr2L:2964623-2964743 6.85e-02 96_[+4(5.69e-05)]_16 chr2L:19166234-19166354 8.08e-02 120 chr3R:21629563-21629683 4.99e-01 120 chr3R:5287067-5287187 2.56e-01 120 chr2L:12457088-12457208 1.42e-02 41_[+1(2.94e-05)]_52_[+2(8.80e-05)]_\ 11 chr2L:11221606-11221726 6.22e-01 120 chr2R:6190202-6190322 1.80e-01 120 chr3L:17625139-17625259 5.71e-02 67_[+1(7.63e-05)]_45 chr2L:10754749-10754869 2.43e-03 120 chr2L:16714056-16714176 7.05e-02 120 chr3R:9918982-9919102 2.74e-02 84_[+3(8.20e-05)]_28 chr3L:16431203-16431323 4.23e-03 30_[+1(2.94e-05)]_4_[+1(2.94e-05)]_\ [+1(2.94e-05)]_14_[+1(2.94e-05)]_25_[+5(6.26e-05)]_7 chr3L:18632337-18632457 2.47e-01 120 chrX:311492-311612 3.14e-01 120 chr2L:3422768-3422888 1.30e-02 52_[+4(2.90e-05)]_60 chr3R:11968714-11968834 3.68e-01 120 chr2L:3572780-3572900 1.86e-01 120 chrX:15640059-15640179 5.43e-01 120 chr3R:25544040-25544160 1.84e-01 120 chr2L:12506872-12506992 8.83e-02 120 chr2R:11641756-11641876 3.76e-01 120 chr3R:14027464-14027584 1.84e-01 120 chr3L:9767755-9767875 9.47e-04 6_[+3(8.20e-05)]_106 chr3R:19571325-19571445 5.49e-01 120 chr2L:7571911-7572031 1.77e-02 75_[+3(8.20e-05)]_18_[+2(8.80e-05)]_\ 11 chr3L:1168580-1168700 6.70e-03 120 chr2R:10212467-10212587 1.74e-01 120 chr3L:20396152-20396272 1.22e-01 56_[+3(8.20e-05)]_56 chr3L:12718665-12718785 9.29e-01 120 chr3L:11004169-11004289 2.48e-02 1_[+3(8.20e-05)]_111 chr3L:247844-247964 3.21e-02 62_[+1(2.94e-05)]_30_[+1(7.63e-05)]_\ 12 chr2R:16221072-16221192 6.04e-01 120 chr3R:27136535-27136655 1.91e-01 39_[+1(2.94e-05)]_73 chr2L:7038635-7038755 3.34e-01 120 chr2L:2909544-2909664 1.20e-01 120 chr3R:24139196-24139316 2.60e-01 67_[+2(8.80e-05)]_45 chrX:5408977-5409097 9.10e-03 18_[+1(7.63e-05)]_94 chr2L:19360182-19360302 1.21e-03 73_[+3(8.20e-05)]_9_[+2(8.80e-05)]_\ 22 chr3R:21871788-21871908 1.37e-02 57_[+1(2.94e-05)]_55 chr3L:17539065-17539185 9.66e-01 120 chr3L:6517088-6517208 1.21e-01 120 chr3L:15647972-15648092 1.18e-03 14_[+4(2.90e-05)]_60_[+1(7.63e-05)]_\ 30 chr3L:16975005-16975125 1.49e-01 16_[+1(7.63e-05)]_36_[+1(9.47e-05)]_\ 52 chr3L:5992432-5992552 2.79e-01 72_[+2(8.80e-05)]_40 chr2L:16256163-16256283 1.39e-02 39_[+1(7.63e-05)]_73 chr3R:9872140-9872260 5.95e-01 120 chr2R:17714538-17714658 2.63e-01 120 chrX:8115747-8115867 3.99e-01 120 chr3L:14986499-14986619 4.32e-01 120 chr2L:12348549-12348669 7.08e-01 120 chr3L:16543466-16543586 1.30e-02 112_[+1(2.94e-05)] chr2L:9495513-9495633 4.61e-02 120 chr3L:20507673-20507793 2.75e-01 17_[+1(7.63e-05)]_95 chr3R:14041243-14041363 3.65e-01 108_[+3(8.20e-05)]_4 chr2R:23747289-23747409 1.53e-02 105_[+2(3.40e-05)]_7 chr3L:22458740-22458860 4.85e-01 120 chr2L:14616020-14616140 2.63e-02 56_[+2(3.40e-05)]_56 chr3L:4461745-4461865 3.93e-01 120 chr4:276396-276516 1.11e-01 120 chr2R:16159171-16159291 3.33e-01 120 chr3L:20410939-20411059 6.73e-03 108_[+2(8.80e-05)]_4 chr3R:5208086-5208206 9.33e-03 43_[+2(8.80e-05)]_37_[+3(8.20e-05)]_\ 24 chrX:2663539-2663659 9.09e-01 120 chr2R:11045754-11045874 1.36e-02 120 chr3R:13434549-13434669 4.14e-02 23_[+1(7.63e-05)]_89 chr2L:9010481-9010601 7.02e-01 120 chr2L:4031355-4031475 9.98e-02 27_[+1(9.47e-05)]_85 chrX:656442-656562 9.53e-02 120 chr2L:7217143-7217263 7.70e-02 120 chr3R:21589577-21589697 4.49e-01 120 chr2L:8300876-8300996 5.82e-03 76_[+4(2.90e-05)]_18_[+1(2.94e-05)]_\ 10 chr3L:20494101-20494221 3.34e-01 120 chr2L:128453-128573 1.41e-01 120 chr3L:12828734-12828854 6.60e-03 120 chrX:17301760-17301880 2.09e-02 63_[+1(7.63e-05)]_49 chr3R:21636903-21637023 5.37e-01 120 chr2L:20935490-20935610 1.54e-02 120 chr3R:21163476-21163596 7.17e-04 31_[+5(1.80e-06)]_81 chr2R:11426844-11426964 6.84e-01 120 chrX:13645157-13645277 8.58e-02 66_[+2(3.40e-05)]_46 chr3L:14549358-14549478 2.10e-01 120 chr3L:18836807-18836927 4.46e-01 120 chr2L:8111188-8111308 6.06e-01 120 chr2R:16335886-16336006 7.54e-02 54_[+1(7.63e-05)]_58 chr3R:5107065-5107185 2.02e-01 120 chr3L:17008827-17008947 8.94e-02 44_[+1(2.94e-05)]_68 chr2L:18965722-18965842 4.02e-02 120 chr2L:9498927-9499047 7.05e-02 105_[+1(2.94e-05)]_7 chr3L:3930915-3931035 1.02e-01 120 chr3L:1577715-1577835 9.59e-01 120 chr3R:19613077-19613197 3.78e-01 77_[+2(8.80e-05)]_35 chr3L:7868950-7869070 9.86e-03 109_[+5(1.80e-06)]_3 chrX:6720148-6720268 8.03e-01 120 chr2L:20390143-20390263 9.35e-02 79_[+2(3.40e-05)]_[+2(3.40e-05)]_25 chr2L:470019-470139 2.40e-01 120 chrX:8685606-8685726 2.17e-01 68_[+3(8.20e-05)]_44 chr3R:17966138-17966258 7.56e-01 120 chr2R:19394799-19394919 4.05e-01 120 chr3R:21271317-21271437 7.67e-01 120 chr4:70278-70398 6.35e-02 53_[+1(7.63e-05)]_59 chr2L:3397704-3397824 1.74e-04 31_[+4(6.95e-05)]_[+3(8.20e-05)]_13_\ [+1(2.94e-05)]_52 chr2R:21848621-21848741 1.99e-01 120 chr2L:8285322-8285442 2.06e-01 8_[+1(7.63e-05)]_104 chr3R:22631315-22631435 7.60e-01 120 chr3L:2439092-2439212 9.77e-02 120 chrX:13108529-13108649 2.71e-01 120 chr3R:5365154-5365274 6.93e-02 120 chr3R:31405380-31405500 6.67e-01 120 chr3L:14354589-14354709 1.12e-02 60_[+1(7.63e-05)]_29_[+1(2.94e-05)]_\ 15 chr3L:18002237-18002357 6.35e-02 120 chr3R:13441820-13441940 1.76e-01 120 chr3R:9390344-9390464 1.47e-01 120 chr3L:9694672-9694792 3.89e-02 68_[+3(8.20e-05)]_24_[+1(9.47e-05)]_\ 12 chr2L:12509602-12509722 2.36e-01 120 chr2R:17272608-17272728 1.05e-03 101_[+3(8.20e-05)]_11 chr2L:10146849-10146969 2.78e-02 100_[+5(6.26e-05)]_12 chr3R:9048863-9048983 2.01e-02 34_[+1(2.94e-05)]_29_[+2(8.80e-05)]_\ 41 chr2R:13470234-13470354 1.01e-01 2_[+3(8.20e-05)]_110 chr3L:1742026-1742146 6.06e-01 120 chr2L:12498624-12498744 1.85e-02 120 chr3L:14274779-14274899 1.59e-03 37_[+3(8.20e-05)]_24_[+3(8.20e-05)]_\ 9_[+3(8.20e-05)]_26 chr2L:8570613-8570733 2.86e-01 120 chr3R:16455939-16456059 8.81e-01 120 chr2L:5096410-5096530 3.93e-01 120 chr2R:14031179-14031299 3.73e-02 24_[+4(8.82e-06)]_88 chr2L:20464500-20464620 4.43e-01 120 chr3L:12835676-12835796 9.66e-02 99_[+1(7.63e-05)]_13 chrX:13322591-13322711 6.14e-01 120 chr2R:21082650-21082770 9.05e-03 12_[+4(4.91e-05)]_100 chr3R:11173298-11173418 9.99e-01 120 chrX:3372795-3372915 6.08e-01 120 chr3R:10131115-10131235 7.92e-02 120 chrX:13820523-13820643 4.38e-01 120 chr3L:4355155-4355275 4.49e-02 101_[+2(3.40e-05)]_11 chr2L:425684-425804 6.96e-02 66_[+3(8.20e-05)]_46 chr3L:8315191-8315311 3.32e-01 120 chr3R:5571138-5571258 7.27e-01 120 chr4:167740-167860 6.23e-01 120 chr3L:1169735-1169855 1.89e-01 120 chr2L:10265233-10265353 7.86e-01 120 chr3L:18112935-18113055 1.73e-01 82_[+3(8.20e-05)]_30 chr2L:1638029-1638149 5.05e-01 120 chr3L:20710613-20710733 7.82e-01 120 chr2L:4227700-4227820 2.51e-02 120 chr3L:2493777-2493897 4.90e-01 120 chr3L:15741956-15742076 1.64e-02 8_[+3(8.20e-05)]_30_[+2(8.80e-05)]_\ 66 chr3L:17896077-17896197 5.29e-04 69_[+2(3.40e-05)]_17_[+4(9.33e-05)]_\ 18 chr3R:17944030-17944150 2.94e-01 24_[+4(5.69e-05)]_88 chr2L:4334127-4334247 1.78e-03 52_[+1(2.94e-05)]_[+1(2.94e-05)]_52 chr3R:5320750-5320870 6.57e-02 120 chr3L:14988437-14988557 1.07e-01 120 chr2L:7528218-7528338 2.34e-01 120 chr2L:1657224-1657344 5.83e-01 120 chr2L:20311183-20311303 3.91e-01 120 chr3R:28327225-28327345 1.50e-01 120 chrX:276200-276320 2.70e-01 7_[+4(9.33e-05)]_105 chr3R:26876656-26876776 1.46e-01 120 chr3L:11248369-11248489 5.00e-01 120 chr3L:511055-511175 1.17e-03 50_[+4(8.82e-06)]_23_[+3(8.20e-05)]_\ 31 chr3R:31603786-31603906 4.60e-01 120 chr2R:14314465-14314585 4.44e-02 54_[+3(8.20e-05)]_58 chr2L:15324060-15324180 2.24e-02 80_[+2(8.80e-05)]_32 chr2R:18497880-18498000 7.59e-02 120 chrX:362265-362385 1.35e-04 45_[+5(6.26e-05)]_43_[+4(3.38e-05)]_\ 16 chr2L:18314058-18314178 2.49e-02 45_[+2(3.40e-05)]_[+2(3.40e-05)]_59 chrX:3869244-3869364 2.85e-04 35_[+1(2.94e-05)]_34_[+4(3.38e-05)]_\ 19_[+3(8.20e-05)]_8 chr2R:8051388-8051508 5.08e-01 120 chr3L:1546999-1547119 2.37e-01 120 chr3L:20769402-20769522 8.79e-01 120 chrX:15852949-15853069 4.90e-01 120 chr3R:26185380-26185500 3.72e-01 120 chr2R:16869365-16869485 2.67e-03 46_[+4(2.13e-05)]_66 chr3R:11338419-11338539 8.57e-02 120 chr2R:12007870-12007990 5.04e-03 30_[+3(8.20e-05)]_82 chr4:695264-695384 3.09e-02 51_[+4(2.43e-05)]_61 chr2R:12729317-12729437 4.79e-02 74_[+3(8.20e-05)]_38 chr3L:7866030-7866150 4.11e-02 51_[+3(8.20e-05)]_61 chr3R:14748795-14748915 6.36e-02 82_[+2(8.80e-05)]_30 chr3R:14744511-14744631 2.38e-02 43_[+4(9.33e-05)]_69 chr2L:8010660-8010780 4.53e-01 120 chr2L:10497542-10497662 1.29e-02 120 chr3L:18179930-18180050 2.43e-01 120 chr3L:7859902-7860022 7.23e-03 11_[+2(3.40e-05)]_90_[+4(2.13e-05)]_\ 3 chr3L:19496149-19496269 5.01e-02 3_[+2(8.80e-05)]_68_[+2(8.80e-05)]_\ 33 chr3R:16285901-16286021 1.81e-01 59_[+1(2.94e-05)]_53 chr3R:14513532-14513652 2.50e-02 15_[+1(7.63e-05)]_97 chr2L:6536066-6536186 2.05e-02 108_[+4(5.89e-06)]_4 chr3L:3141487-3141607 5.76e-01 120 chr3L:9692383-9692503 2.28e-01 120 chr2L:6792077-6792197 9.70e-01 120 chr3R:30465940-30466060 5.02e-03 92_[+4(2.94e-06)]_20 chr2L:18981695-18981815 4.74e-03 120 chr3R:18928401-18928521 2.19e-03 19_[+4(8.18e-05)]_13_[+1(2.94e-05)]_\ 72 chr2R:22403186-22403306 2.15e-02 52_[+3(8.20e-05)]_60 chr2R:17027942-17028062 3.01e-03 43_[+3(8.20e-05)]_47_[+2(8.80e-05)]_\ 14 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************