******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17385.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:21176415-21176535 1.0000 120 chr3R:18243196-18243316 1.0000 120 chr2R:8951853-8951973 1.0000 120 chr2R:11604553-11604673 1.0000 120 chr2L:12692482-12692602 1.0000 120 chr3R:18199323-18199443 1.0000 120 chr3R:8343482-8343602 1.0000 120 chr3R:21348521-21348641 1.0000 120 chrX:8060624-8060744 1.0000 120 chr3R:5670153-5670273 1.0000 120 chr3L:19085848-19085968 1.0000 120 chr2L:4882673-4882793 1.0000 120 chrX:4930750-4930870 1.0000 120 chr3R:29049475-29049595 1.0000 120 chr3R:6407277-6407397 1.0000 120 chr3L:16100247-16100367 1.0000 120 chr2L:11813279-11813399 1.0000 120 chrX:12028223-12028343 1.0000 120 chr3L:3225926-3226046 1.0000 120 chr3R:7902595-7902715 1.0000 120 chr3R:7186388-7186508 1.0000 120 chr3R:21660342-21660462 1.0000 120 chrX:19788231-19788351 1.0000 120 chr2L:18448649-18448769 1.0000 120 chrX:18410046-18410166 1.0000 120 chr2R:9881937-9882057 1.0000 120 chr3R:21632270-21632390 1.0000 120 chrX:21323565-21323685 1.0000 120 chr2L:6960348-6960468 1.0000 120 chr3R:14663115-14663235 1.0000 120 chr2R:24133260-24133380 1.0000 120 chr3L:2635041-2635161 1.0000 120 chrX:1341633-1341753 1.0000 120 chr3R:14742239-14742359 1.0000 120 chrX:17077106-17077226 1.0000 120 chrX:13222208-13222328 1.0000 120 chr2R:14152433-14152553 1.0000 120 chrX:2269508-2269628 1.0000 120 chrX:2448168-2448288 1.0000 120 chr2R:16867264-16867384 1.0000 120 chrX:11453737-11453857 1.0000 120 chrX:6804029-6804149 1.0000 120 chr2R:21250544-21250664 1.0000 120 chr2L:8403060-8403180 1.0000 120 chrX:19480496-19480616 1.0000 120 chr3L:15514899-15515019 1.0000 120 chr2L:18948835-18948955 1.0000 120 chr3L:17529600-17529720 1.0000 120 chr2R:9399887-9400007 1.0000 120 chr3R:5632257-5632377 1.0000 120 chr2L:8266820-8266940 1.0000 120 chr3L:995794-995914 1.0000 120 chrX:5081630-5081750 1.0000 120 chr3L:1145713-1145833 1.0000 120 chrX:8661019-8661139 1.0000 120 chr3R:10884993-10885113 1.0000 120 chrX:6684349-6684469 1.0000 120 chr3R:26058194-26058314 1.0000 120 chr2R:16240668-16240788 1.0000 120 chr3L:1034626-1034746 1.0000 120 chr2L:4968867-4968987 1.0000 120 chrX:20510143-20510263 1.0000 120 chr3R:17805170-17805290 1.0000 120 chr2R:6629628-6629748 1.0000 120 chr3L:1569767-1569887 1.0000 120 chr3R:9679899-9680019 1.0000 120 chr2R:19142227-19142347 1.0000 120 chr2R:15682670-15682790 1.0000 120 chr3R:31580187-31580307 1.0000 120 chr2R:13822845-13822965 1.0000 120 chr2R:18614944-18615064 1.0000 120 chr2R:12150770-12150890 1.0000 120 chrX:18865100-18865220 1.0000 120 chrX:7944423-7944543 1.0000 120 chr2L:18698650-18698770 1.0000 120 chrX:9355825-9355945 1.0000 120 chr3R:24220999-24221119 1.0000 120 chrX:16792355-16792475 1.0000 120 chr3R:11237725-11237845 1.0000 120 chr2L:19571577-19571697 1.0000 120 chr3L:18905361-18905481 1.0000 120 chrX:2586086-2586206 1.0000 120 chr3R:29138529-29138649 1.0000 120 chr2L:16352161-16352281 1.0000 120 chrX:18836415-18836535 1.0000 120 chr3R:31405702-31405822 1.0000 120 chr3L:20497880-20498000 1.0000 120 chr3L:5616618-5616738 1.0000 120 chr3R:20592616-20592736 1.0000 120 chrX:19221126-19221246 1.0000 120 chr3L:4542483-4542603 1.0000 120 chr3L:5360178-5360298 1.0000 120 chr2R:12184250-12184370 1.0000 120 chrX:11891956-11892076 1.0000 120 chr3L:211348-211468 1.0000 120 chr2R:20640913-20641033 1.0000 120 chr3R:19642427-19642547 1.0000 120 chrX:8176465-8176585 1.0000 120 chr3L:22288151-22288271 1.0000 120 chr2R:16612095-16612215 1.0000 120 chrX:11601385-11601505 1.0000 120 chr3L:347779-347899 1.0000 120 chr3L:16865729-16865849 1.0000 120 chrX:12905491-12905611 1.0000 120 chrX:11792842-11792962 1.0000 120 chr3L:10516322-10516442 1.0000 120 chrX:15328271-15328391 1.0000 120 chrX:16599414-16599534 1.0000 120 chr3L:652808-652928 1.0000 120 chrX:18893597-18893717 1.0000 120 chr2L:2226919-2227039 1.0000 120 chr2R:16196243-16196363 1.0000 120 chr3L:12537245-12537365 1.0000 120 chr2R:21161155-21161275 1.0000 120 chr3R:29726548-29726668 1.0000 120 chr2R:11640338-11640458 1.0000 120 chr3R:21360136-21360256 1.0000 120 chrX:2010650-2010770 1.0000 120 chr3R:10264622-10264742 1.0000 120 chr2R:19142441-19142561 1.0000 120 chr2L:19134006-19134126 1.0000 120 chr2L:6424293-6424413 1.0000 120 chr3L:1302376-1302496 1.0000 120 chr2L:19158804-19158924 1.0000 120 chr2R:11651023-11651143 1.0000 120 chr3R:10682764-10682884 1.0000 120 chrX:8807440-8807560 1.0000 120 chrX:11817419-11817539 1.0000 120 chr2L:19498114-19498234 1.0000 120 chrX:11390196-11390316 1.0000 120 chr3L:19635266-19635386 1.0000 120 chr3L:22743295-22743415 1.0000 120 chrX:8907543-8907663 1.0000 120 chr3R:14736711-14736831 1.0000 120 chr3R:30880351-30880471 1.0000 120 chr3R:24318967-24319087 1.0000 120 chr2R:6631851-6631971 1.0000 120 chr3R:16275994-16276114 1.0000 120 chr3L:639976-640096 1.0000 120 chr2L:3159317-3159437 1.0000 120 chr3L:6925986-6926106 1.0000 120 chr3R:25983363-25983483 1.0000 120 chr3L:20347888-20348008 1.0000 120 chrX:16456688-16456808 1.0000 120 chrX:5340118-5340238 1.0000 120 chr3L:2766181-2766301 1.0000 120 chr3R:4428641-4428761 1.0000 120 chr3R:9630251-9630371 1.0000 120 chr3R:5464071-5464191 1.0000 120 chrX:1874015-1874135 1.0000 120 chrX:21338176-21338296 1.0000 120 chr3L:5365645-5365765 1.0000 120 chr3R:27111925-27112045 1.0000 120 chrX:8121068-8121188 1.0000 120 chrX:11793044-11793164 1.0000 120 chr3R:13684746-13684866 1.0000 120 chrX:6700266-6700386 1.0000 120 chr3L:1569985-1570105 1.0000 120 chr3R:20027965-20028085 1.0000 120 chr2R:17723288-17723408 1.0000 120 chr2R:20278834-20278954 1.0000 120 chrX:10815108-10815228 1.0000 120 chr3L:539601-539721 1.0000 120 chrX:6268000-6268120 1.0000 120 chrX:1893615-1893735 1.0000 120 chrX:9686996-9687116 1.0000 120 chrX:13783998-13784118 1.0000 120 chr2L:18689646-18689766 1.0000 120 chrX:4936935-4937055 1.0000 120 chrX:6352598-6352718 1.0000 120 chrX:13616122-13616242 1.0000 120 chr2L:21033480-21033600 1.0000 120 chrX:6875939-6876059 1.0000 120 chr3R:9418562-9418682 1.0000 120 chr3L:16419220-16419340 1.0000 120 chr2L:15256508-15256628 1.0000 120 chr3L:8545646-8545766 1.0000 120 chr2R:12437743-12437863 1.0000 120 chr3L:8421339-8421459 1.0000 120 chr3L:7156353-7156473 1.0000 120 chr3R:27922103-27922223 1.0000 120 chr2R:25010958-25011078 1.0000 120 chrX:17739052-17739172 1.0000 120 chrX:8518466-8518586 1.0000 120 chr3L:3545147-3545267 1.0000 120 chrX:8058051-8058171 1.0000 120 chr3R:29592058-29592178 1.0000 120 chr2R:17270049-17270169 1.0000 120 chrX:19637506-19637626 1.0000 120 chr2L:1164404-1164524 1.0000 120 chrX:5690255-5690375 1.0000 120 chr3R:9236358-9236478 1.0000 120 chr2R:9145189-9145309 1.0000 120 chrX:17122807-17122927 1.0000 120 chr3R:17680337-17680457 1.0000 120 chr2L:12038467-12038587 1.0000 120 chrX:2292850-2292970 1.0000 120 chrX:6997385-6997505 1.0000 120 chr3R:20057692-20057812 1.0000 120 chr3L:4252265-4252385 1.0000 120 chr3R:6392626-6392746 1.0000 120 chr3L:882980-883100 1.0000 120 chr3R:16071812-16071932 1.0000 120 chr3L:4193882-4194002 1.0000 120 chr3L:18819699-18819819 1.0000 120 chrX:17423612-17423732 1.0000 120 chrX:19479858-19479978 1.0000 120 chrX:14825558-14825678 1.0000 120 chr2L:11066538-11066658 1.0000 120 chr3L:1568277-1568397 1.0000 120 chr3R:10134122-10134242 1.0000 120 chr2L:6561614-6561734 1.0000 120 chr2L:4198001-4198121 1.0000 120 chrX:9609174-9609294 1.0000 120 chrX:19261814-19261934 1.0000 120 chr2L:19158027-19158147 1.0000 120 chr3L:10886036-10886156 1.0000 120 chr3R:29087049-29087169 1.0000 120 chrX:1966484-1966604 1.0000 120 chr2L:5300485-5300605 1.0000 120 chr3L:15512081-15512201 1.0000 120 chr3R:17714498-17714618 1.0000 120 chrX:13625160-13625280 1.0000 120 chr3R:21097298-21097418 1.0000 120 chrX:4104167-4104287 1.0000 120 chr3R:21156945-21157065 1.0000 120 chr2R:10597057-10597177 1.0000 120 chr2L:19034620-19034740 1.0000 120 chr3R:15291373-15291493 1.0000 120 chr3R:5612721-5612841 1.0000 120 chrX:8676620-8676740 1.0000 120 chr2R:11634862-11634982 1.0000 120 chrX:840478-840598 1.0000 120 chrX:18843782-18843902 1.0000 120 chr3L:4627194-4627314 1.0000 120 chr2R:11613202-11613322 1.0000 120 chr2L:4187776-4187896 1.0000 120 chr3R:25662071-25662191 1.0000 120 chr3L:16377793-16377913 1.0000 120 chr2L:19493564-19493684 1.0000 120 chrX:5518465-5518585 1.0000 120 chrX:7710000-7710120 1.0000 120 chrX:4203647-4203767 1.0000 120 chr3R:31771779-31771899 1.0000 120 chr2L:16311097-16311217 1.0000 120 chr2L:4973949-4974069 1.0000 120 chr3L:8451035-8451155 1.0000 120 chr2L:21846839-21846959 1.0000 120 chr2R:6214047-6214167 1.0000 120 chr3R:31722907-31723027 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG17385/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17385.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.272 C 0.221 G 0.227 T 0.281 Background letter frequencies (from file dataset with add-one prior applied): A 0.272 C 0.221 G 0.227 T 0.281 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AGAAGAAG MEME-1 width = 8 sites = 134 llr = 1320 E-value = 1.3e-203 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAAGAAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A a:a9:9a: pos.-specific C :::::1:: probability G :a:1a::a matrix T :::::::: bits 2.2 * * 2.0 * * * 1.7 *** * ** 1.5 *** **** Relative 1.3 ******** Entropy 1.1 ******** (14.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAAGAAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAGAAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:31722907-31723027 67 1.74e-05 GGTCTGTGGG AGAAGAAG AGGAAGCATC chr2L:16311097-16311217 86 1.74e-05 CCCAGGTGGA AGAAGAAG CTGGAGGCGT chr2L:19493564-19493684 30 1.74e-05 GCAGATGGGA AGAAGAAG CAATTAAAAG chr3R:25662071-25662191 60 1.74e-05 GTGCAAGTGA AGAAGAAG CAGAAACTGT chr2L:4187776-4187896 78 1.74e-05 AACGGCGGCA AGAAGAAG AATACGCGCC chr2R:11613202-11613322 45 1.74e-05 agagcgaagt agaagaag cagcggcagc chrX:18843782-18843902 88 1.74e-05 CTGCGCAGGA AGAAGAAG AACGACAACG chrX:8676620-8676740 56 1.74e-05 agcaggagta agaagaag aagaagaaga chr3R:15291373-15291493 52 1.74e-05 GACGTGCTGA AGAAGAAG ATGCGCCAGA chr2L:19034620-19034740 50 1.74e-05 CTAGATAGAA AGAAGAAG CACACTAAAT chrX:13625160-13625280 77 1.74e-05 aagagcaaga agaagaag CGTTGACGCA chrX:1966484-1966604 73 1.74e-05 GAGCCAGCGA AGAAGAAG CAGCACACAC chr3L:4193882-4194002 78 1.74e-05 AATGACAGGA AGAAGAAG CAATCAGCTG chr3R:6392626-6392746 67 1.74e-05 atcagggaga agaagaag cagTGGCAGG chr3L:4252265-4252385 68 1.74e-05 GGACGTGAGA AGAAGAAG CACCAAAGAT chr3R:20057692-20057812 75 1.74e-05 CTAGCCGGGA AGAAGAAG CGCCAGTTGG chrX:6997385-6997505 69 1.74e-05 AGCGCTTCAA AGAAGAAG AGCTGTGTAA chr2L:12038467-12038587 89 1.74e-05 TTATTATGGA AGAAGAAG ATCAGTGAGA chrX:17122807-17122927 83 1.74e-05 gagaagcgaa agaagaag aaaatcgaat chr2R:9145189-9145309 63 1.74e-05 ATAACACAGA AGAAGAAG AAGTCAATCA chr2L:1164404-1164524 58 1.74e-05 CTGGAGCAGA AGAAGAAG AAGATGCATA chrX:19637506-19637626 75 1.74e-05 AACGGGGCAA AGAAGAAG CAGCAACGAC chr3R:29592058-29592178 75 1.74e-05 AAGCGGAGGA AGAAGAAG CAGATCATCA chrX:8058051-8058171 58 1.74e-05 gagttgcgga agaagaag aagcagaGAC chrX:8518466-8518586 66 1.74e-05 ATGGTGACGA AGAAGAAG AGCGCAGACA chrX:17739052-17739172 58 1.74e-05 aagtactaga agaagaag cagcagcagc chr3R:27922103-27922223 36 1.74e-05 AGCCTTTGGA AGAAGAAG ATGCCATTTC chr3L:7156353-7156473 65 1.74e-05 CAGCTGGAGA AGAAGAAG AGCATGAATG chr2R:12437743-12437863 79 1.74e-05 AAGAGCAGCA AGAAGAAG CAGCAACTCC chr3L:8545646-8545766 53 1.74e-05 TTGCTgaaga agaagaag aagaagCGCC chr2L:15256508-15256628 73 1.74e-05 TGCAAAGATA AGAAGAAG AAACGAGAAG chrX:6875939-6876059 90 1.74e-05 gaagatgatg agaagaag aagagtgagg chr2L:18689646-18689766 73 1.74e-05 TGGTAGATAG AGAAGAAG AACAAAAATT chrX:1893615-1893735 46 1.74e-05 TTGTTAGGAA AGAAGAAG ACACGCGCAA chr2R:17723288-17723408 42 1.74e-05 GAGAATATTG AGAAGAAG AAGAGCGTTG chr3L:5365645-5365765 73 1.74e-05 TATGAAGGCA AGAAGAAg agcgtgcgcg chrX:1874015-1874135 94 1.74e-05 AAACGGAAGA AGAAGAAG CCGATTCGAC chr3R:4428641-4428761 57 1.74e-05 GATGGCGGAA agaagaag cagcagtagc chrX:5340118-5340238 75 1.74e-05 gcgGAGAGTA AGAAGAAG CACGCTATAT chrX:16456688-16456808 43 1.74e-05 AAGGGCAAGA AGAAGAAG AAGACTGAGC chr3L:6925986-6926106 70 1.74e-05 CAGCTGAGGA AGAAGAAG CAGCAGCCGC chr2L:3159317-3159437 49 1.74e-05 CTATGGATGA AGAAGAAG CAGCATCACA chr3R:16275994-16276114 50 1.74e-05 AGCCAAACTA AGAAGAAG AGCCATGAGA chr3R:24318967-24319087 70 1.74e-05 TCACACGGGA AGAAGAAG CTGCGAAAAG chrX:11390196-11390316 90 1.74e-05 ATCGAGTTCa agaagaag aagaagagaa chrX:8807440-8807560 60 1.74e-05 TTCGATAGGA AGAAGAAG ATGTTCGACA chr3R:10682764-10682884 68 1.74e-05 GACTTAaaga agaagaag aagaagcagc chr2L:6424293-6424413 62 1.74e-05 gaaaagaaga agaagaag caagTACGTG chr2R:21161155-21161275 33 1.74e-05 CATATCATCA AGAAGAAG ATTCTTACTC chr3L:10516322-10516442 72 1.74e-05 ACAaagaaga agaagaag tggaggaaga chrX:12905491-12905611 42 1.74e-05 GCGGCgaaga agaagaag aggaagaagc chrX:11601385-11601505 69 1.74e-05 CAGCAAAAAA AGAAGAAG AAAAACCGGT chr2R:16612095-16612215 73 1.74e-05 CAACCgaaga agaagaag cagcagcaac chrX:8176465-8176585 28 1.74e-05 AAAGGGGCGA AGAAGAAG CAGCAGCTTA chr2R:20640913-20641033 79 1.74e-05 GTAGAGAGGA AGAAGAAG ACACACAATA chrX:11891956-11892076 69 1.74e-05 TCTGGTGGAA AGAAGAAG CACAGATGCG chr2R:12184250-12184370 66 1.74e-05 TACCagaaca agaagaag aatagcatag chrX:19221126-19221246 77 1.74e-05 gagaaaaaga agaagaag GGGTCTCGTA chr3L:20497880-20498000 72 1.74e-05 gaacatagca agaagaag cagcagcttc chrX:18836415-18836535 58 1.74e-05 aagaagaaga agaagaag aaCAGACTGT chrX:2586086-2586206 100 1.74e-05 AACAACAAGA AGAAGAAG CACGTGTGCG chr3L:18905361-18905481 43 1.74e-05 TAATTTCAGA AGAAGAAG CGCACCACGC chrX:16792355-16792475 73 1.74e-05 cagtggagga agaagaag cagcagcaga chr3R:24220999-24221119 51 1.74e-05 CAAAACAAGA AGAAGAAG GAAAGCCGTA chr2L:18698650-18698770 73 1.74e-05 TATTTTAGAA AGAAGAAG ACAACACGTG chrX:7944423-7944543 49 1.74e-05 gggcaaggca agaagaag agcaacagca chrX:18865100-18865220 78 1.74e-05 gagcagctga agaagaag aacaagaaTC chr2R:18614944-18615064 62 1.74e-05 GGAAAACCAA AGAAGAAG AGCGGCACCG chr2R:19142227-19142347 42 1.74e-05 GGgaagctga agaagaag cagcagcagc chr3R:9679899-9680019 66 1.74e-05 AACGCGGGAA AGAAGAAG CACAATTGAA chr2R:6629628-6629748 39 1.74e-05 ATCGGTCGAA AGAAGAAG AGAACAACAA chr3R:26058194-26058314 56 1.74e-05 CAATTTATGA AGAAGAAG CATTCACCGG chrX:6684349-6684469 60 1.74e-05 AAATTGGCGG AGAAGAAG AGGAAGCAGC chr3R:10884993-10885113 76 1.74e-05 AGAGGTTACA AGAAGAAG AAGCGAAGGA chrX:8661019-8661139 48 1.74e-05 TGAAGACTGA AGAAGAAG AGCGCGCGCA chr3L:15514899-15515019 106 1.74e-05 CGCATCGCGA AGAAGAAG AGCCGCC chrX:19480496-19480616 79 1.74e-05 acgaccaagc agaagaag cagcaggccg chrX:2448168-2448288 80 1.74e-05 TATACAGCGA AGAAGAAG CAAGGactca chrX:13222208-13222328 80 1.74e-05 AAAAGAGCga agaagaag agcgaagcca chr3L:2635041-2635161 75 1.74e-05 TGGAGGAGAA AGAAGAAG CATCAGCAAA chr2L:6960348-6960468 54 1.74e-05 CAGCGAAAAA AGAAGAAG CGGAATACGT chrX:18410046-18410166 71 1.74e-05 GCGGCCTGGA AGAAGAAG ACGTTTTACG chr3R:7186388-7186508 58 1.74e-05 caccagcgga agaagaag cagcagcagc chr3R:7902595-7902715 55 1.74e-05 ATTTTGCGGA AGAAGAAG AGAATAAACA chr3L:3225926-3226046 86 1.74e-05 agaagagcgc agaagaag GCCGAGCAAA chrX:12028223-12028343 34 1.74e-05 CTGAGTAGGA AGAAGAAG AAGCAGCAGC chr3R:6407277-6407397 67 1.74e-05 TGGAGGAGCA AGAAGAAG AGCAGCAGCA chr3R:29049475-29049595 46 1.74e-05 CCGACTAGGA AGAAGAAG CACATCCAAA chrX:4930750-4930870 36 1.74e-05 GCCACGCGAA AGAAGAAG AAAACGAGAG chr2L:4882673-4882793 59 1.74e-05 gaggagatga agaagaag aggagcgggc chr3R:5670153-5670273 48 1.74e-05 CGCAGGCAAG AGAAGAAG CAGAGCCATA chr3R:8343482-8343602 49 1.74e-05 TGGCATTAAA AGAAGAAG AGTGGCACAC chr2R:11604553-11604673 67 1.74e-05 aggaggaaga agaagaag cagcagaaCT chr2R:8951853-8951973 84 1.74e-05 GCGGCTGGGA AGAAGAAG CAGCGGGGTA chr3R:18243196-18243316 74 1.74e-05 aagaagccga agaagaag cagagcgtcg chr3L:21176415-21176535 82 1.74e-05 aagaggaaga agaagaag cagCGCAGCC chr2L:4973949-4974069 64 3.19e-05 CCAAACAGGA AGAGGAAG AGCGCCGTTG chrX:4203647-4203767 48 3.19e-05 GGCGAGGAGA AGAGGAAG AAGGCAGTGC chr2L:5300485-5300605 66 3.19e-05 TTTCGGCCAA AGAGGAAG AGCGCGCGTG chrX:9609174-9609294 83 3.19e-05 gtgctgggaa agaggaag agCACATCTT chr2L:6561614-6561734 31 3.19e-05 TCTATAGAGA AGAGGAAG AGAAATTCAG chr3L:16419220-16419340 79 3.19e-05 AAAAAGTGAA AGAGGAAG AACGCAAATG chrX:13783998-13784118 57 3.19e-05 TAAGGAAGGA AGAGGAAG CAGCAGTGTA chrX:6700266-6700386 42 3.19e-05 acgtcaaaGA AGAGGAAG AAGCAAGATA chr3L:639976-640096 60 3.19e-05 GGAATgcaga agaggaag aagcagcagc chrX:11817419-11817539 31 3.19e-05 CGGCAGCGGC AGAGGAAG ACGAAGAAGA chr3L:12537245-12537365 57 3.19e-05 AAATAAGAGA AGAGGAAG AGCTGTCTTC chr2L:2226919-2227039 43 3.19e-05 AAACGAGGAA AGAGGAAG AAGAGCAGCA chrX:15328271-15328391 81 3.19e-05 CGCTAACGGA AGAGGAAG AGATCGCGAG chr3L:16865729-16865849 81 3.19e-05 GTCGAATTGG AGAGGAAG GGGCaaataa chr3L:5360178-5360298 51 3.19e-05 GCAGCGAAGA AGAGGAAG ACGTTGTGGC chr2R:16240668-16240788 35 3.19e-05 CGCAAAAGCA AGAGGAAG AGAAGGCAAG chr3L:10886036-10886156 70 4.61e-05 ACGGCAATAA AGAAGCAG AGTCACAGCT chr3L:1568277-1568397 43 4.61e-05 CTCCACGGGA AGAAGCAG AAGCGAAACG chr3R:17680337-17680457 52 4.61e-05 CGGGGGAGGA AGAAGCAG CAGAAGCGGT chr3R:9236358-9236478 74 4.61e-05 GGGAGAAGGA AGAAGCAG AGCAGCCAAA chrX:5690255-5690375 72 4.61e-05 GGTGTGGGTA AGAAGCAG AAAAGACAGT chr2L:21033480-21033600 74 4.61e-05 AGTAGGAGGA AGAAGCAG CAGCACGCAC chr3L:539601-539721 73 4.61e-05 GTTAAAAGAA AGAAGCAG AACGGCCTGA chr3L:2766181-2766301 51 4.61e-05 TAAACAAAAA AGAAGCAG AAAAAATAGC chr2L:19134006-19134126 73 4.61e-05 CGGCAAGGAA AGAAGCAG AGAGGCGAAG chr2R:15682670-15682790 61 4.61e-05 AATTCAAGCA AGAAGCAG CACGCGCCGC chrX:14825558-14825678 28 8.66e-05 caaccacaac agcaGAAG GCGTCGCGGT chrX:16599414-16599534 107 8.66e-05 CAGTGTGTGC GGAAGAAG TGGAAG chrX:11793044-11793164 97 1.04e-04 TGTGCGAGCA ACAAGAAG CGGAACCAAA chrX:1341633-1341753 17 1.04e-04 aaaaggaaga acaagaag agaaCTTTGA chrX:17423612-17423732 111 1.46e-04 GCATTACCAC CGAAGAAG AA chr3L:20347888-20348008 111 1.46e-04 TAAGCATAAC AGAAGACG AG chrX:21323565-21323685 31 1.46e-04 TTTTCAAGGG AGAAGGAG GGGTATGGTC chr2L:8266820-8266940 59 1.64e-04 tgcttTGTGA AGATGAAG CAACAGGCGG chrX:11453737-11453857 11 1.82e-04 GTAAAGATGA TGAAGAAG AACGACACAT chr2R:16867264-16867384 2 2.03e-04 C AAAAGAAG CCGAATCAAT chrX:6268000-6268120 109 2.27e-04 TCCCGCAGGA GGAGGAAG AATT chrX:21338176-21338296 105 2.65e-04 caacaccccc agcagcag cagcaACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAGAAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:31722907-31723027 1.7e-05 66_[+1]_46 chr2L:16311097-16311217 1.7e-05 85_[+1]_27 chr2L:19493564-19493684 1.7e-05 29_[+1]_83 chr3R:25662071-25662191 1.7e-05 59_[+1]_53 chr2L:4187776-4187896 1.7e-05 77_[+1]_35 chr2R:11613202-11613322 1.7e-05 44_[+1]_68 chrX:18843782-18843902 1.7e-05 87_[+1]_25 chrX:8676620-8676740 1.7e-05 55_[+1]_57 chr3R:15291373-15291493 1.7e-05 51_[+1]_61 chr2L:19034620-19034740 1.7e-05 49_[+1]_63 chrX:13625160-13625280 1.7e-05 76_[+1]_36 chrX:1966484-1966604 1.7e-05 72_[+1]_40 chr3L:4193882-4194002 1.7e-05 77_[+1]_35 chr3R:6392626-6392746 1.7e-05 66_[+1]_46 chr3L:4252265-4252385 1.7e-05 67_[+1]_45 chr3R:20057692-20057812 1.7e-05 74_[+1]_38 chrX:6997385-6997505 1.7e-05 68_[+1]_44 chr2L:12038467-12038587 1.7e-05 88_[+1]_24 chrX:17122807-17122927 1.7e-05 82_[+1]_30 chr2R:9145189-9145309 1.7e-05 62_[+1]_50 chr2L:1164404-1164524 1.7e-05 57_[+1]_55 chrX:19637506-19637626 1.7e-05 74_[+1]_38 chr3R:29592058-29592178 1.7e-05 74_[+1]_38 chrX:8058051-8058171 1.7e-05 57_[+1]_55 chrX:8518466-8518586 1.7e-05 65_[+1]_47 chrX:17739052-17739172 1.7e-05 57_[+1]_55 chr3R:27922103-27922223 1.7e-05 35_[+1]_77 chr3L:7156353-7156473 1.7e-05 64_[+1]_48 chr2R:12437743-12437863 1.7e-05 78_[+1]_34 chr3L:8545646-8545766 1.7e-05 52_[+1]_60 chr2L:15256508-15256628 1.7e-05 72_[+1]_40 chrX:6875939-6876059 1.7e-05 89_[+1]_23 chr2L:18689646-18689766 1.7e-05 72_[+1]_40 chrX:1893615-1893735 1.7e-05 45_[+1]_67 chr2R:17723288-17723408 1.7e-05 41_[+1]_71 chr3L:5365645-5365765 1.7e-05 72_[+1]_40 chrX:1874015-1874135 1.7e-05 93_[+1]_19 chr3R:4428641-4428761 1.7e-05 56_[+1]_56 chrX:5340118-5340238 1.7e-05 74_[+1]_38 chrX:16456688-16456808 1.7e-05 42_[+1]_70 chr3L:6925986-6926106 1.7e-05 69_[+1]_43 chr2L:3159317-3159437 1.7e-05 48_[+1]_64 chr3R:16275994-16276114 1.7e-05 49_[+1]_63 chr3R:24318967-24319087 1.7e-05 69_[+1]_43 chrX:11390196-11390316 1.7e-05 89_[+1]_23 chrX:8807440-8807560 1.7e-05 59_[+1]_53 chr3R:10682764-10682884 1.7e-05 67_[+1]_45 chr2L:6424293-6424413 1.7e-05 61_[+1]_51 chr2R:21161155-21161275 1.7e-05 32_[+1]_80 chr3L:10516322-10516442 1.7e-05 71_[+1]_41 chrX:12905491-12905611 1.7e-05 41_[+1]_71 chrX:11601385-11601505 1.7e-05 68_[+1]_44 chr2R:16612095-16612215 1.7e-05 72_[+1]_40 chrX:8176465-8176585 1.7e-05 27_[+1]_85 chr2R:20640913-20641033 1.7e-05 78_[+1]_34 chrX:11891956-11892076 1.7e-05 68_[+1]_44 chr2R:12184250-12184370 1.7e-05 65_[+1]_47 chrX:19221126-19221246 1.7e-05 76_[+1]_36 chr3L:20497880-20498000 1.7e-05 71_[+1]_41 chrX:18836415-18836535 1.7e-05 57_[+1]_55 chrX:2586086-2586206 1.7e-05 99_[+1]_13 chr3L:18905361-18905481 1.7e-05 42_[+1]_70 chrX:16792355-16792475 1.7e-05 72_[+1]_40 chr3R:24220999-24221119 1.7e-05 50_[+1]_62 chr2L:18698650-18698770 1.7e-05 72_[+1]_40 chrX:7944423-7944543 1.7e-05 48_[+1]_64 chrX:18865100-18865220 1.7e-05 77_[+1]_35 chr2R:18614944-18615064 1.7e-05 61_[+1]_51 chr2R:19142227-19142347 1.7e-05 41_[+1]_71 chr3R:9679899-9680019 1.7e-05 65_[+1]_47 chr2R:6629628-6629748 1.7e-05 38_[+1]_74 chr3R:26058194-26058314 1.7e-05 55_[+1]_57 chrX:6684349-6684469 1.7e-05 59_[+1]_53 chr3R:10884993-10885113 1.7e-05 75_[+1]_37 chrX:8661019-8661139 1.7e-05 47_[+1]_65 chr3L:15514899-15515019 1.7e-05 105_[+1]_7 chrX:19480496-19480616 1.7e-05 78_[+1]_34 chrX:2448168-2448288 1.7e-05 79_[+1]_33 chrX:13222208-13222328 1.7e-05 79_[+1]_33 chr3L:2635041-2635161 1.7e-05 74_[+1]_38 chr2L:6960348-6960468 1.7e-05 53_[+1]_59 chrX:18410046-18410166 1.7e-05 70_[+1]_42 chr3R:7186388-7186508 1.7e-05 57_[+1]_55 chr3R:7902595-7902715 1.7e-05 54_[+1]_58 chr3L:3225926-3226046 1.7e-05 85_[+1]_27 chrX:12028223-12028343 1.7e-05 33_[+1]_79 chr3R:6407277-6407397 1.7e-05 66_[+1]_46 chr3R:29049475-29049595 1.7e-05 45_[+1]_67 chrX:4930750-4930870 1.7e-05 35_[+1]_77 chr2L:4882673-4882793 1.7e-05 58_[+1]_54 chr3R:5670153-5670273 1.7e-05 47_[+1]_65 chr3R:8343482-8343602 1.7e-05 48_[+1]_64 chr2R:11604553-11604673 1.7e-05 66_[+1]_46 chr2R:8951853-8951973 1.7e-05 83_[+1]_29 chr3R:18243196-18243316 1.7e-05 73_[+1]_39 chr3L:21176415-21176535 1.7e-05 81_[+1]_31 chr2L:4973949-4974069 3.2e-05 63_[+1]_49 chrX:4203647-4203767 3.2e-05 47_[+1]_65 chr2L:5300485-5300605 3.2e-05 65_[+1]_47 chrX:9609174-9609294 3.2e-05 82_[+1]_30 chr2L:6561614-6561734 3.2e-05 30_[+1]_82 chr3L:16419220-16419340 3.2e-05 78_[+1]_34 chrX:13783998-13784118 3.2e-05 56_[+1]_56 chrX:6700266-6700386 3.2e-05 41_[+1]_71 chr3L:639976-640096 3.2e-05 59_[+1]_53 chrX:11817419-11817539 3.2e-05 30_[+1]_82 chr3L:12537245-12537365 3.2e-05 56_[+1]_56 chr2L:2226919-2227039 3.2e-05 42_[+1]_70 chrX:15328271-15328391 3.2e-05 80_[+1]_32 chr3L:16865729-16865849 3.2e-05 80_[+1]_32 chr3L:5360178-5360298 3.2e-05 50_[+1]_62 chr2R:16240668-16240788 3.2e-05 34_[+1]_78 chr3L:10886036-10886156 4.6e-05 69_[+1]_43 chr3L:1568277-1568397 4.6e-05 42_[+1]_70 chr3R:17680337-17680457 4.6e-05 51_[+1]_61 chr3R:9236358-9236478 4.6e-05 73_[+1]_39 chrX:5690255-5690375 4.6e-05 71_[+1]_41 chr2L:21033480-21033600 4.6e-05 73_[+1]_39 chr3L:539601-539721 4.6e-05 72_[+1]_40 chr3L:2766181-2766301 4.6e-05 50_[+1]_62 chr2L:19134006-19134126 4.6e-05 72_[+1]_40 chr2R:15682670-15682790 4.6e-05 60_[+1]_52 chrX:14825558-14825678 8.7e-05 27_[+1]_85 chrX:16599414-16599534 8.7e-05 106_[+1]_6 chrX:11793044-11793164 0.0001 96_[+1]_16 chrX:1341633-1341753 0.0001 16_[+1]_96 chrX:17423612-17423732 0.00015 110_[+1]_2 chr3L:20347888-20348008 0.00015 110_[+1]_2 chrX:21323565-21323685 0.00015 30_[+1]_82 chr2L:8266820-8266940 0.00016 58_[+1]_54 chrX:11453737-11453857 0.00018 10_[+1]_102 chr2R:16867264-16867384 0.0002 1_[+1]_111 chrX:6268000-6268120 0.00023 108_[+1]_4 chrX:21338176-21338296 0.00026 104_[+1]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAGAAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAAGAAG width=8 seqs=134 chr3R:31722907-31723027 ( 67) AGAAGAAG 1 chr2L:16311097-16311217 ( 86) AGAAGAAG 1 chr2L:19493564-19493684 ( 30) AGAAGAAG 1 chr3R:25662071-25662191 ( 60) AGAAGAAG 1 chr2L:4187776-4187896 ( 78) AGAAGAAG 1 chr2R:11613202-11613322 ( 45) AGAAGAAG 1 chrX:18843782-18843902 ( 88) AGAAGAAG 1 chrX:8676620-8676740 ( 56) AGAAGAAG 1 chr3R:15291373-15291493 ( 52) AGAAGAAG 1 chr2L:19034620-19034740 ( 50) AGAAGAAG 1 chrX:13625160-13625280 ( 77) AGAAGAAG 1 chrX:1966484-1966604 ( 73) AGAAGAAG 1 chr3L:4193882-4194002 ( 78) AGAAGAAG 1 chr3R:6392626-6392746 ( 67) AGAAGAAG 1 chr3L:4252265-4252385 ( 68) AGAAGAAG 1 chr3R:20057692-20057812 ( 75) AGAAGAAG 1 chrX:6997385-6997505 ( 69) AGAAGAAG 1 chr2L:12038467-12038587 ( 89) AGAAGAAG 1 chrX:17122807-17122927 ( 83) AGAAGAAG 1 chr2R:9145189-9145309 ( 63) AGAAGAAG 1 chr2L:1164404-1164524 ( 58) AGAAGAAG 1 chrX:19637506-19637626 ( 75) AGAAGAAG 1 chr3R:29592058-29592178 ( 75) AGAAGAAG 1 chrX:8058051-8058171 ( 58) AGAAGAAG 1 chrX:8518466-8518586 ( 66) AGAAGAAG 1 chrX:17739052-17739172 ( 58) AGAAGAAG 1 chr3R:27922103-27922223 ( 36) AGAAGAAG 1 chr3L:7156353-7156473 ( 65) AGAAGAAG 1 chr2R:12437743-12437863 ( 79) AGAAGAAG 1 chr3L:8545646-8545766 ( 53) AGAAGAAG 1 chr2L:15256508-15256628 ( 73) AGAAGAAG 1 chrX:6875939-6876059 ( 90) AGAAGAAG 1 chr2L:18689646-18689766 ( 73) AGAAGAAG 1 chrX:1893615-1893735 ( 46) AGAAGAAG 1 chr2R:17723288-17723408 ( 42) AGAAGAAG 1 chr3L:5365645-5365765 ( 73) AGAAGAAG 1 chrX:1874015-1874135 ( 94) AGAAGAAG 1 chr3R:4428641-4428761 ( 57) AGAAGAAG 1 chrX:5340118-5340238 ( 75) AGAAGAAG 1 chrX:16456688-16456808 ( 43) AGAAGAAG 1 chr3L:6925986-6926106 ( 70) AGAAGAAG 1 chr2L:3159317-3159437 ( 49) AGAAGAAG 1 chr3R:16275994-16276114 ( 50) AGAAGAAG 1 chr3R:24318967-24319087 ( 70) AGAAGAAG 1 chrX:11390196-11390316 ( 90) AGAAGAAG 1 chrX:8807440-8807560 ( 60) AGAAGAAG 1 chr3R:10682764-10682884 ( 68) AGAAGAAG 1 chr2L:6424293-6424413 ( 62) AGAAGAAG 1 chr2R:21161155-21161275 ( 33) AGAAGAAG 1 chr3L:10516322-10516442 ( 72) AGAAGAAG 1 chrX:12905491-12905611 ( 42) AGAAGAAG 1 chrX:11601385-11601505 ( 69) AGAAGAAG 1 chr2R:16612095-16612215 ( 73) AGAAGAAG 1 chrX:8176465-8176585 ( 28) AGAAGAAG 1 chr2R:20640913-20641033 ( 79) AGAAGAAG 1 chrX:11891956-11892076 ( 69) AGAAGAAG 1 chr2R:12184250-12184370 ( 66) AGAAGAAG 1 chrX:19221126-19221246 ( 77) AGAAGAAG 1 chr3L:20497880-20498000 ( 72) AGAAGAAG 1 chrX:18836415-18836535 ( 58) AGAAGAAG 1 chrX:2586086-2586206 ( 100) AGAAGAAG 1 chr3L:18905361-18905481 ( 43) AGAAGAAG 1 chrX:16792355-16792475 ( 73) AGAAGAAG 1 chr3R:24220999-24221119 ( 51) AGAAGAAG 1 chr2L:18698650-18698770 ( 73) AGAAGAAG 1 chrX:7944423-7944543 ( 49) AGAAGAAG 1 chrX:18865100-18865220 ( 78) AGAAGAAG 1 chr2R:18614944-18615064 ( 62) AGAAGAAG 1 chr2R:19142227-19142347 ( 42) AGAAGAAG 1 chr3R:9679899-9680019 ( 66) AGAAGAAG 1 chr2R:6629628-6629748 ( 39) AGAAGAAG 1 chr3R:26058194-26058314 ( 56) AGAAGAAG 1 chrX:6684349-6684469 ( 60) AGAAGAAG 1 chr3R:10884993-10885113 ( 76) AGAAGAAG 1 chrX:8661019-8661139 ( 48) AGAAGAAG 1 chr3L:15514899-15515019 ( 106) AGAAGAAG 1 chrX:19480496-19480616 ( 79) AGAAGAAG 1 chrX:2448168-2448288 ( 80) AGAAGAAG 1 chrX:13222208-13222328 ( 80) AGAAGAAG 1 chr3L:2635041-2635161 ( 75) AGAAGAAG 1 chr2L:6960348-6960468 ( 54) AGAAGAAG 1 chrX:18410046-18410166 ( 71) AGAAGAAG 1 chr3R:7186388-7186508 ( 58) AGAAGAAG 1 chr3R:7902595-7902715 ( 55) AGAAGAAG 1 chr3L:3225926-3226046 ( 86) AGAAGAAG 1 chrX:12028223-12028343 ( 34) AGAAGAAG 1 chr3R:6407277-6407397 ( 67) AGAAGAAG 1 chr3R:29049475-29049595 ( 46) AGAAGAAG 1 chrX:4930750-4930870 ( 36) AGAAGAAG 1 chr2L:4882673-4882793 ( 59) AGAAGAAG 1 chr3R:5670153-5670273 ( 48) AGAAGAAG 1 chr3R:8343482-8343602 ( 49) AGAAGAAG 1 chr2R:11604553-11604673 ( 67) AGAAGAAG 1 chr2R:8951853-8951973 ( 84) AGAAGAAG 1 chr3R:18243196-18243316 ( 74) AGAAGAAG 1 chr3L:21176415-21176535 ( 82) AGAAGAAG 1 chr2L:4973949-4974069 ( 64) AGAGGAAG 1 chrX:4203647-4203767 ( 48) AGAGGAAG 1 chr2L:5300485-5300605 ( 66) AGAGGAAG 1 chrX:9609174-9609294 ( 83) AGAGGAAG 1 chr2L:6561614-6561734 ( 31) AGAGGAAG 1 chr3L:16419220-16419340 ( 79) AGAGGAAG 1 chrX:13783998-13784118 ( 57) AGAGGAAG 1 chrX:6700266-6700386 ( 42) AGAGGAAG 1 chr3L:639976-640096 ( 60) AGAGGAAG 1 chrX:11817419-11817539 ( 31) AGAGGAAG 1 chr3L:12537245-12537365 ( 57) AGAGGAAG 1 chr2L:2226919-2227039 ( 43) AGAGGAAG 1 chrX:15328271-15328391 ( 81) AGAGGAAG 1 chr3L:16865729-16865849 ( 81) AGAGGAAG 1 chr3L:5360178-5360298 ( 51) AGAGGAAG 1 chr2R:16240668-16240788 ( 35) AGAGGAAG 1 chr3L:10886036-10886156 ( 70) AGAAGCAG 1 chr3L:1568277-1568397 ( 43) AGAAGCAG 1 chr3R:17680337-17680457 ( 52) AGAAGCAG 1 chr3R:9236358-9236478 ( 74) AGAAGCAG 1 chrX:5690255-5690375 ( 72) AGAAGCAG 1 chr2L:21033480-21033600 ( 74) AGAAGCAG 1 chr3L:539601-539721 ( 73) AGAAGCAG 1 chr3L:2766181-2766301 ( 51) AGAAGCAG 1 chr2L:19134006-19134126 ( 73) AGAAGCAG 1 chr2R:15682670-15682790 ( 61) AGAAGCAG 1 chrX:14825558-14825678 ( 28) AGCAGAAG 1 chrX:16599414-16599534 ( 107) GGAAGAAG 1 chrX:11793044-11793164 ( 97) ACAAGAAG 1 chrX:1341633-1341753 ( 17) ACAAGAAG 1 chrX:17423612-17423732 ( 111) CGAAGAAG 1 chr3L:20347888-20348008 ( 111) AGAAGACG 1 chrX:21323565-21323685 ( 31) AGAAGGAG 1 chr2L:8266820-8266940 ( 59) AGATGAAG 1 chrX:11453737-11453857 ( 11) TGAAGAAG 1 chr2R:16867264-16867384 ( 2) AAAAGAAG 1 chrX:6268000-6268120 ( 109) GGAGGAAG 1 chrX:21338176-21338296 ( 105) AGCAGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAGAAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 7.76589 E= 1.3e-203 183 -488 -392 -523 -518 -388 211 -1371 186 -388 -1371 -1371 167 -1371 -84 -523 -1371 -1371 214 -1371 174 -143 -492 -1371 187 -488 -1371 -1371 -1371 -1371 214 -1371 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAGAAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 134 E= 1.3e-203 0.970149 0.007463 0.014925 0.007463 0.007463 0.014925 0.977612 0.000000 0.985075 0.014925 0.000000 0.000000 0.865672 0.000000 0.126866 0.007463 0.000000 0.000000 1.000000 0.000000 0.910448 0.082090 0.007463 0.000000 0.992537 0.007463 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAAGAAG MEME-1 regular expression -------------------------------------------------------------------------------- AGAAGAAG -------------------------------------------------------------------------------- Time 7.36 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTCTTCT MEME-2 width = 8 sites = 131 llr = 1278 E-value = 6.6e-193 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTCTTCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::a2:a: probability G ::1::::: matrix T :a9:7a:a bits 2.2 * 2.0 * * * 1.7 ** * *** 1.5 **** *** Relative 1.3 **** *** Entropy 1.1 ******** (14.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTCTTCT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCTTCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6214047-6214167 53 1.89e-05 TTTCTTCGCT CTTCTTCT TTCTCACATA chr2L:21846839-21846959 43 1.89e-05 GCAtcttctg cttcttct tcatcttctt chr3L:8451035-8451155 59 1.89e-05 CGTGcttctt cttcttct tcttcCACTC chr3R:31771779-31771899 41 1.89e-05 TGTGAACCAT CTTCTTCT TCACCCGGCC chrX:7710000-7710120 50 1.89e-05 AACGGCAGct cttcttct tattctctct chrX:5518465-5518585 86 1.89e-05 TGCTTCTTCC CTTCTTCT GATAACTGGT chr3L:16377793-16377913 43 1.89e-05 TCGTCTTTTT CTTCTTCT TGCCTTACCC chrX:840478-840598 100 1.89e-05 tttcgctctc cttcttct tcgccAGTCA chr2R:11634862-11634982 63 1.89e-05 TTAAACCCTT CTTCTTCT TCTTATGGAA chr2R:10597057-10597177 10 1.89e-05 GCCGTCTTG CTTCTTCT ACTTTTACTT chr3R:21156945-21157065 87 1.89e-05 TGCTCCTCTT CTTCTTCT CACCCCTTCC chr3R:17714498-17714618 24 1.89e-05 tattccgctg cttcttct tctttgtctt chr3L:15512081-15512201 78 1.89e-05 tcttcttctt cttcttct tcCAGAGCAC chr3R:29087049-29087169 53 1.89e-05 GCTTCATTTT CTTCTTCT TTCTGGCCTT chr2L:19158027-19158147 40 1.89e-05 gttcgtgctt cttcttct ccgacttcat chr2L:4198001-4198121 45 1.89e-05 CGCGCACGCT CTTCTTCT TCACTGGCGA chr2L:11066538-11066658 51 1.89e-05 cctgctgttg cttcttct tcttGCTAAG chrX:14825558-14825678 51 1.89e-05 GCGGTGCGCT CTTCTTCT TGCTCTCCTT chrX:19479858-19479978 40 1.89e-05 CGGTGGTGCT CTTCTTCT TTTTGCCTCT chr3L:18819699-18819819 71 1.89e-05 GCTGCTGCTT CTTCTTCT ACGTCGCCGT chr3L:882980-883100 44 1.89e-05 AGCAGTTCTT CTTCTTCT TGGGTGGTTG chrX:2292850-2292970 69 1.89e-05 gctggtgctg cttcttct tctgtctgAc chr2R:17270049-17270169 43 1.89e-05 ttttcttcct cttcttct tcatcGCCAG chr3L:3545147-3545267 75 1.89e-05 TTTACCGTCT CTTCTTCT TCCTCGCCAG chr3L:8421339-8421459 51 1.89e-05 GCCTGCtctt cttcttct tcttcctgct chr3R:9418562-9418682 71 1.89e-05 TCCAACTCGT CTTCTTCT TCCCGTCCCT chrX:6352598-6352718 99 1.89e-05 CCATCCTCTT CTTCTTCT TCAACACACG chrX:4936935-4937055 49 1.89e-05 CACTTGCATT CTTCTTCT TTTACGTTAT chrX:10815108-10815228 19 1.89e-05 tttctttatt cttcttct ttcccttcta chr2R:20278834-20278954 57 1.89e-05 TTGAATGCTG CTTCTTCT TCCCTCTGTT chr3L:1569985-1570105 104 1.89e-05 CTTGTTGTTG CTTCTTCT TTGTGCAGC chr3R:13684746-13684866 39 1.89e-05 CCACACGCCT CTTCTTCT TTCCCACAAT chrX:8121068-8121188 53 1.89e-05 CGTGCTGCTT CTTCTTCT TCAAATCAGC chr3R:5464071-5464191 79 1.89e-05 ACGCACTCTT CTTCTTCT GCTACAATCC chr3R:9630251-9630371 44 1.89e-05 AGTGGttttt cttcttct tcctcttctt chr3L:20347888-20348008 35 1.89e-05 TGTTTACTAT CTTCTTCT TTTAAAATGG chr2R:6631851-6631971 91 1.89e-05 ATTTCCTCTT CTTCTTCT ACCCTTTACG chr3L:22743295-22743415 61 1.89e-05 TCTGCTTTTT CTTCTTCT TGCTCCGTTT chr3L:19635266-19635386 58 1.89e-05 gttgctgctt cttcttct tcctctgctg chr2L:19158804-19158924 56 1.89e-05 GCTGCTCATT CTTCTTCT TCCACCGATG chr3L:1302376-1302496 58 1.89e-05 TGCGGGGGTG CTTCTTCT TCAGGCGTTT chr2R:19142441-19142561 67 1.89e-05 CTCCTGCTGC CTTCTTCT TTAACTGCTG chrX:2010650-2010770 46 1.89e-05 CCTATCGCTG CTTCTTCT TTGCTGCGTG chr3R:21360136-21360256 54 1.89e-05 GTACAGTGCT CTTCTTCT TTAAACCGTG chr2R:11640338-11640458 52 1.89e-05 GTTGCTGCTG CTTCTTCT TTTTCCTGGA chr3R:29726548-29726668 47 1.89e-05 CTGTGACGCT CTTCTTCT TCTTGCCGTT chrX:18893597-18893717 35 1.89e-05 TTCTTTAACT CTTCTTCT TCTCTATTTT chrX:11792842-11792962 47 1.89e-05 ACAGTGTGTG CTTCTTCT TGCTGCTCGG chr3L:16865729-16865849 22 1.89e-05 CTTCTTCGCT CTTCTTCT TATTGAAATT chr3L:4542483-4542603 41 1.89e-05 CAGCctgctt cttcttct tcctcttcat chr3R:20592616-20592736 37 1.89e-05 GGTTGTGCTT CTTCTTCT TGCTCTGTTA chr3L:5616618-5616738 95 1.89e-05 gcttcttcct cttcttct gctgctgACG chr3R:31405702-31405822 67 1.89e-05 CGTGTCGCTG CTTCTTCT TGTTCTTTCA chr2L:16352161-16352281 38 1.89e-05 GTTTCGTTCG CTTCTTCT TCCTTTTGTT chr2L:19571577-19571697 42 1.89e-05 GTGGctgctt cttcttct gctcttgcgt chrX:9355825-9355945 58 1.89e-05 tccaccgctg cttcttct tcttctcttc chr2R:12150770-12150890 42 1.89e-05 TACTCGTTCT CTTCTTCT TGTTTTTCTA chr2R:13822845-13822965 30 1.89e-05 CGTTGGCTCt cttcttct cctctccact chr3R:31580187-31580307 71 1.89e-05 TGGCAGCGCT CTTCTTCT TGCCAGCGAT chr3L:1569767-1569887 32 1.89e-05 AAGCTCGAGT CTTCTTCT TTCCCCACTC chrX:20510143-20510263 74 1.89e-05 tcagcttctg cttcttct tcgccatttg chr3L:1034626-1034746 38 1.89e-05 CGTCTTGGCT CTTCTTCT TGCCACTGCT chr3L:1145713-1145833 59 1.89e-05 tcttcttcct cttcttct tcttGCCAAT chrX:5081630-5081750 37 1.89e-05 TCTTCGCCTT CTTCTTCT TCTCATAGAT chr3L:995794-995914 26 1.89e-05 TCCCGCCATT CTTCTTCT TGGTTACCTA chr2L:8266820-8266940 42 1.89e-05 gttacttctt cttcttct gcttTGTGAA chr3R:5632257-5632377 69 1.89e-05 TGGAACTGCG CTTCTTCT TAGATGTCTG chr2L:8403060-8403180 29 1.89e-05 CATCGCAGCT CTTCTTCT TCGCCGAACC chr2R:21250544-21250664 34 1.89e-05 gttgctgctt cttcttct gttgttgctg chrX:6804029-6804149 76 1.89e-05 tcttcctctt cttcttct GCCGGCGCCA chrX:2269508-2269628 37 1.89e-05 actctcactg cttcttcT TCTACAGCTC chr2R:14152433-14152553 36 1.89e-05 AATTGATGTT CTTCTTCT TTTCTACGTC chrX:13222208-13222328 36 1.89e-05 GACGTTTCTT CTTCTTCT TTTGAAACTG chrX:1341633-1341753 47 1.89e-05 TGAGCAGCTT CTTCTTCT TATTATTGAT chr2R:24133260-24133380 44 1.89e-05 TCCACGGGCT CTTCTTCT TGCTTGTTTG chr3R:14663115-14663235 52 1.89e-05 ATTAACTCCT CTTCTTCT TTAGCAGTGT chrX:21323565-21323685 93 1.89e-05 GGCGtctgct cttcttct tctcttttgt chr2R:9881937-9882057 9 1.89e-05 AGTTGCCT CTTCTTCT TGCGCCCTTG chrX:12028223-12028343 89 1.89e-05 GCTTCAGCGT CTTCTTCT TCGTTTGCTC chr2L:11813279-11813399 29 1.89e-05 ACGACTCTAA CTTCTTCT TCTTCTTCCC chrX:4930750-4930870 72 1.89e-05 GCTACTGCTG CTTCTTCT TCGAAGTCCG chr3L:19085848-19085968 46 1.89e-05 cgctggttct cttcttct ttcttGGCCG chr3R:21348521-21348641 40 1.89e-05 GGAGCTGGCT CTTCTTCT TCACCTTGTG chr3R:18199323-18199443 18 1.89e-05 GCTGCTGCTG CTTCTTCT TCCACTAAAA chr2L:12692482-12692602 40 1.89e-05 GCGCGCTCTT CTTCTTCT TCCGCCCAAG chr3L:4627194-4627314 39 3.38e-05 TGATGTCTAT CTTCCTCT TCTGTGTGTT chrX:19261814-19261934 33 3.38e-05 CGAGTATGCT CTTCCTCT TCGATAAACG chr3R:16071812-16071932 67 3.38e-05 CATAGAGGCT CTTCCTCT TCCAGCTAAT chr2R:25010958-25011078 59 3.38e-05 GGCtcttttt cttcctct tcgtcttctC chrX:9686996-9687116 81 3.38e-05 CCGCTCGTCT CTTCCTCT TCTTAACGTT chr3R:20027965-20028085 45 3.38e-05 AATAACTCTG CTTCCTCT TCGCTGTTTG chr3R:27111925-27112045 38 3.38e-05 TACTCCTGCT CTTCCTCT TCTTCCTTTT chrX:21338176-21338296 58 3.38e-05 GTTCACTTGT CTTCCTCT TCCTGCTTCG chr3R:30880351-30880471 59 3.38e-05 TTTTTTCGGG CTTCCTCT TCTGCTTCTT chr3R:14736711-14736831 44 3.38e-05 GCTGGCACCT CTTCCTCT TCCCGCTTGA chrX:8907543-8907663 42 3.38e-05 CGTCTCTCTG CTTCCTCT TCACTGTTCT chr2L:19498114-19498234 65 3.38e-05 CATCGATGTT CTTCCTCT TCATATGGCG chr2R:11651023-11651143 54 3.38e-05 TATTGTTGTT CTTCCTCT ACCTCCTTCT chr2R:16196243-16196363 40 3.38e-05 GTTTTTTGCG CTTCCTCT TATCTGCCTT chr3L:347779-347899 81 3.38e-05 TATTGTTATT CTTCCTCT TGCTCTCTAC chr3L:22288151-22288271 16 3.38e-05 ACACATTACT CTTCCTCT TGTTTTCGCG chr3R:19642427-19642547 55 3.38e-05 CTTTTTCGCT CTTCCTCT TCTGCGGTGC chr3L:211348-211468 74 3.38e-05 TTATTGTATT CTTCCTCT TCGTAGCTTT chr3R:29138529-29138649 44 3.38e-05 ACGAGTTGTG CTTCCTCT TCGCCTTTGC chr2R:9399887-9400007 29 3.38e-05 GGGCTGTCTT CTTCCTCT TCTTCACCAA chr3L:17529600-17529720 38 3.38e-05 ACGCACCTCT CTTCCTCT TCTTCCTGCT chr2L:18948835-18948955 52 3.38e-05 GCCAATGACT CTTCCTCT TTCCTTTTTG chr2R:16867264-16867384 34 3.38e-05 ACTTCCGCTT CTTCCTCT TCCAAGTGGT chrX:17077106-17077226 30 3.38e-05 GCTGCTGCTG CTTCCTCT TCTCGTGGAG chr2L:18448649-18448769 76 3.38e-05 TCCTGCTTTG CTTCCTCT TCCTCGCGCC chr3R:21660342-21660462 76 3.38e-05 CGGGCTGCTG CTTCCTCT TCACTTTAAC chr3R:5612721-5612841 71 4.91e-05 GCTGTTGTCT CTGCTTCT TACTACACTG chr3R:21097298-21097418 71 4.91e-05 gccgctgctg ctgcttct tgctcctTTC chr3L:652808-652928 47 4.91e-05 ACAACAAACT CTGCTTCT TCCTCGCAAT chr2L:4968867-4968987 33 4.91e-05 CGGTGTCCTG CTGCTTCT TCCTATTCAG chrX:11453737-11453857 67 4.91e-05 ACCTTTGCTG CTGCTTCT TCGGCCACTG chr3R:21632270-21632390 72 4.91e-05 TAATGTGCTG CTGCTTCT TACTCGTTTG chrX:19788231-19788351 39 4.91e-05 tcatcgtgct ctgcttct tcctcatcAG chrX:8060624-8060744 41 4.91e-05 ACGAACGTTT CTGCTTCT TGCTCCTCTT chr3R:10134122-10134242 42 6.11e-05 attctgCGCG CTGCCTCT TCTTCCCGTT chr3R:25983363-25983483 51 6.11e-05 ACCTGCTGCT CTGCCTCT TCCTCCCCCA chrX:13616122-13616242 36 7.64e-05 TTTTATTCTT CTTCGTCT TCCACCTCTC chr3L:6925986-6926106 87 7.64e-05 GCAGCAGCCG CTTCGTCT GTTTTCGTAG chr2L:5300485-5300605 9 1.00e-04 TGTTTCGG TTTCTTCT GCCCCAATGC chr2L:3159317-3159437 89 1.00e-04 GCAAACATTT TTTCTTCT CTTTCACACA chr3L:7156353-7156473 113 1.19e-04 CGTCCTGCCG TTTCctct chr2R:16612095-16612215 5 1.19e-04 CGTC TTTCCTCT CTTCGCACTC chr3R:11237725-11237845 65 1.39e-04 TGCCGCTTTT CTTGTTCT TCCGTCCAAA chrX:4104167-4104287 16 1.87e-04 TTATAAAATG CTTCTTTT TGCCGATTTG chr3R:16275994-16276114 17 1.87e-04 ATGGCGTCTG CTTTTTCT CGCCTCTGGC chrX:2448168-2448288 16 1.99e-04 gcgcgcgctg ctgcgtct gtgtgtgcgt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCTTCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6214047-6214167 1.9e-05 52_[+2]_60 chr2L:21846839-21846959 1.9e-05 42_[+2]_70 chr3L:8451035-8451155 1.9e-05 58_[+2]_54 chr3R:31771779-31771899 1.9e-05 40_[+2]_72 chrX:7710000-7710120 1.9e-05 49_[+2]_63 chrX:5518465-5518585 1.9e-05 85_[+2]_27 chr3L:16377793-16377913 1.9e-05 42_[+2]_70 chrX:840478-840598 1.9e-05 99_[+2]_13 chr2R:11634862-11634982 1.9e-05 62_[+2]_50 chr2R:10597057-10597177 1.9e-05 9_[+2]_103 chr3R:21156945-21157065 1.9e-05 86_[+2]_26 chr3R:17714498-17714618 1.9e-05 23_[+2]_89 chr3L:15512081-15512201 1.9e-05 77_[+2]_35 chr3R:29087049-29087169 1.9e-05 52_[+2]_60 chr2L:19158027-19158147 1.9e-05 39_[+2]_73 chr2L:4198001-4198121 1.9e-05 44_[+2]_68 chr2L:11066538-11066658 1.9e-05 50_[+2]_62 chrX:14825558-14825678 1.9e-05 50_[+2]_62 chrX:19479858-19479978 1.9e-05 39_[+2]_73 chr3L:18819699-18819819 1.9e-05 70_[+2]_42 chr3L:882980-883100 1.9e-05 43_[+2]_69 chrX:2292850-2292970 1.9e-05 68_[+2]_44 chr2R:17270049-17270169 1.9e-05 42_[+2]_70 chr3L:3545147-3545267 1.9e-05 74_[+2]_38 chr3L:8421339-8421459 1.9e-05 50_[+2]_62 chr3R:9418562-9418682 1.9e-05 70_[+2]_42 chrX:6352598-6352718 1.9e-05 98_[+2]_14 chrX:4936935-4937055 1.9e-05 48_[+2]_64 chrX:10815108-10815228 1.9e-05 18_[+2]_94 chr2R:20278834-20278954 1.9e-05 56_[+2]_56 chr3L:1569985-1570105 1.9e-05 103_[+2]_9 chr3R:13684746-13684866 1.9e-05 38_[+2]_74 chrX:8121068-8121188 1.9e-05 52_[+2]_60 chr3R:5464071-5464191 1.9e-05 78_[+2]_34 chr3R:9630251-9630371 1.9e-05 43_[+2]_69 chr3L:20347888-20348008 1.9e-05 34_[+2]_78 chr2R:6631851-6631971 1.9e-05 90_[+2]_22 chr3L:22743295-22743415 1.9e-05 60_[+2]_52 chr3L:19635266-19635386 1.9e-05 57_[+2]_55 chr2L:19158804-19158924 1.9e-05 55_[+2]_57 chr3L:1302376-1302496 1.9e-05 57_[+2]_55 chr2R:19142441-19142561 1.9e-05 66_[+2]_46 chrX:2010650-2010770 1.9e-05 45_[+2]_67 chr3R:21360136-21360256 1.9e-05 53_[+2]_59 chr2R:11640338-11640458 1.9e-05 51_[+2]_61 chr3R:29726548-29726668 1.9e-05 46_[+2]_66 chrX:18893597-18893717 1.9e-05 34_[+2]_78 chrX:11792842-11792962 1.9e-05 46_[+2]_66 chr3L:16865729-16865849 1.9e-05 21_[+2]_91 chr3L:4542483-4542603 1.9e-05 40_[+2]_72 chr3R:20592616-20592736 1.9e-05 36_[+2]_76 chr3L:5616618-5616738 1.9e-05 94_[+2]_18 chr3R:31405702-31405822 1.9e-05 66_[+2]_46 chr2L:16352161-16352281 1.9e-05 37_[+2]_75 chr2L:19571577-19571697 1.9e-05 41_[+2]_71 chrX:9355825-9355945 1.9e-05 57_[+2]_55 chr2R:12150770-12150890 1.9e-05 41_[+2]_71 chr2R:13822845-13822965 1.9e-05 29_[+2]_83 chr3R:31580187-31580307 1.9e-05 70_[+2]_42 chr3L:1569767-1569887 1.9e-05 31_[+2]_81 chrX:20510143-20510263 1.9e-05 73_[+2]_39 chr3L:1034626-1034746 1.9e-05 37_[+2]_75 chr3L:1145713-1145833 1.9e-05 58_[+2]_54 chrX:5081630-5081750 1.9e-05 36_[+2]_76 chr3L:995794-995914 1.9e-05 25_[+2]_87 chr2L:8266820-8266940 1.9e-05 41_[+2]_71 chr3R:5632257-5632377 1.9e-05 68_[+2]_44 chr2L:8403060-8403180 1.9e-05 28_[+2]_84 chr2R:21250544-21250664 1.9e-05 33_[+2]_79 chrX:6804029-6804149 1.9e-05 75_[+2]_37 chrX:2269508-2269628 1.9e-05 36_[+2]_76 chr2R:14152433-14152553 1.9e-05 35_[+2]_77 chrX:13222208-13222328 1.9e-05 35_[+2]_77 chrX:1341633-1341753 1.9e-05 46_[+2]_66 chr2R:24133260-24133380 1.9e-05 43_[+2]_69 chr3R:14663115-14663235 1.9e-05 51_[+2]_61 chrX:21323565-21323685 1.9e-05 92_[+2]_20 chr2R:9881937-9882057 1.9e-05 8_[+2]_104 chrX:12028223-12028343 1.9e-05 88_[+2]_24 chr2L:11813279-11813399 1.9e-05 28_[+2]_84 chrX:4930750-4930870 1.9e-05 71_[+2]_41 chr3L:19085848-19085968 1.9e-05 45_[+2]_67 chr3R:21348521-21348641 1.9e-05 39_[+2]_73 chr3R:18199323-18199443 1.9e-05 17_[+2]_95 chr2L:12692482-12692602 1.9e-05 39_[+2]_73 chr3L:4627194-4627314 3.4e-05 38_[+2]_74 chrX:19261814-19261934 3.4e-05 32_[+2]_80 chr3R:16071812-16071932 3.4e-05 66_[+2]_46 chr2R:25010958-25011078 3.4e-05 58_[+2]_54 chrX:9686996-9687116 3.4e-05 80_[+2]_32 chr3R:20027965-20028085 3.4e-05 44_[+2]_68 chr3R:27111925-27112045 3.4e-05 37_[+2]_75 chrX:21338176-21338296 3.4e-05 57_[+2]_55 chr3R:30880351-30880471 3.4e-05 58_[+2]_54 chr3R:14736711-14736831 3.4e-05 43_[+2]_69 chrX:8907543-8907663 3.4e-05 41_[+2]_71 chr2L:19498114-19498234 3.4e-05 64_[+2]_48 chr2R:11651023-11651143 3.4e-05 53_[+2]_59 chr2R:16196243-16196363 3.4e-05 39_[+2]_73 chr3L:347779-347899 3.4e-05 80_[+2]_32 chr3L:22288151-22288271 3.4e-05 15_[+2]_97 chr3R:19642427-19642547 3.4e-05 54_[+2]_58 chr3L:211348-211468 3.4e-05 73_[+2]_39 chr3R:29138529-29138649 3.4e-05 43_[+2]_69 chr2R:9399887-9400007 3.4e-05 28_[+2]_84 chr3L:17529600-17529720 3.4e-05 37_[+2]_75 chr2L:18948835-18948955 3.4e-05 51_[+2]_61 chr2R:16867264-16867384 3.4e-05 33_[+2]_79 chrX:17077106-17077226 3.4e-05 29_[+2]_83 chr2L:18448649-18448769 3.4e-05 75_[+2]_37 chr3R:21660342-21660462 3.4e-05 75_[+2]_37 chr3R:5612721-5612841 4.9e-05 70_[+2]_42 chr3R:21097298-21097418 4.9e-05 70_[+2]_42 chr3L:652808-652928 4.9e-05 46_[+2]_66 chr2L:4968867-4968987 4.9e-05 32_[+2]_80 chrX:11453737-11453857 4.9e-05 66_[+2]_46 chr3R:21632270-21632390 4.9e-05 71_[+2]_41 chrX:19788231-19788351 4.9e-05 38_[+2]_74 chrX:8060624-8060744 4.9e-05 40_[+2]_72 chr3R:10134122-10134242 6.1e-05 41_[+2]_71 chr3R:25983363-25983483 6.1e-05 50_[+2]_62 chrX:13616122-13616242 7.6e-05 35_[+2]_77 chr3L:6925986-6926106 7.6e-05 86_[+2]_26 chr2L:5300485-5300605 0.0001 8_[+2]_104 chr2L:3159317-3159437 0.0001 88_[+2]_24 chr3L:7156353-7156473 0.00012 112_[+2] chr2R:16612095-16612215 0.00012 4_[+2]_108 chr3R:11237725-11237845 0.00014 64_[+2]_48 chrX:4104167-4104287 0.00019 15_[+2]_97 chr3R:16275994-16276114 0.00019 16_[+2]_96 chrX:2448168-2448288 0.0002 15_[+2]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCTTCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTCTTCT width=8 seqs=131 chr2R:6214047-6214167 ( 53) CTTCTTCT 1 chr2L:21846839-21846959 ( 43) CTTCTTCT 1 chr3L:8451035-8451155 ( 59) CTTCTTCT 1 chr3R:31771779-31771899 ( 41) CTTCTTCT 1 chrX:7710000-7710120 ( 50) CTTCTTCT 1 chrX:5518465-5518585 ( 86) CTTCTTCT 1 chr3L:16377793-16377913 ( 43) CTTCTTCT 1 chrX:840478-840598 ( 100) CTTCTTCT 1 chr2R:11634862-11634982 ( 63) CTTCTTCT 1 chr2R:10597057-10597177 ( 10) CTTCTTCT 1 chr3R:21156945-21157065 ( 87) CTTCTTCT 1 chr3R:17714498-17714618 ( 24) CTTCTTCT 1 chr3L:15512081-15512201 ( 78) CTTCTTCT 1 chr3R:29087049-29087169 ( 53) CTTCTTCT 1 chr2L:19158027-19158147 ( 40) CTTCTTCT 1 chr2L:4198001-4198121 ( 45) CTTCTTCT 1 chr2L:11066538-11066658 ( 51) CTTCTTCT 1 chrX:14825558-14825678 ( 51) CTTCTTCT 1 chrX:19479858-19479978 ( 40) CTTCTTCT 1 chr3L:18819699-18819819 ( 71) CTTCTTCT 1 chr3L:882980-883100 ( 44) CTTCTTCT 1 chrX:2292850-2292970 ( 69) CTTCTTCT 1 chr2R:17270049-17270169 ( 43) CTTCTTCT 1 chr3L:3545147-3545267 ( 75) CTTCTTCT 1 chr3L:8421339-8421459 ( 51) CTTCTTCT 1 chr3R:9418562-9418682 ( 71) CTTCTTCT 1 chrX:6352598-6352718 ( 99) CTTCTTCT 1 chrX:4936935-4937055 ( 49) CTTCTTCT 1 chrX:10815108-10815228 ( 19) CTTCTTCT 1 chr2R:20278834-20278954 ( 57) CTTCTTCT 1 chr3L:1569985-1570105 ( 104) CTTCTTCT 1 chr3R:13684746-13684866 ( 39) CTTCTTCT 1 chrX:8121068-8121188 ( 53) CTTCTTCT 1 chr3R:5464071-5464191 ( 79) CTTCTTCT 1 chr3R:9630251-9630371 ( 44) CTTCTTCT 1 chr3L:20347888-20348008 ( 35) CTTCTTCT 1 chr2R:6631851-6631971 ( 91) CTTCTTCT 1 chr3L:22743295-22743415 ( 61) CTTCTTCT 1 chr3L:19635266-19635386 ( 58) CTTCTTCT 1 chr2L:19158804-19158924 ( 56) CTTCTTCT 1 chr3L:1302376-1302496 ( 58) CTTCTTCT 1 chr2R:19142441-19142561 ( 67) CTTCTTCT 1 chrX:2010650-2010770 ( 46) CTTCTTCT 1 chr3R:21360136-21360256 ( 54) CTTCTTCT 1 chr2R:11640338-11640458 ( 52) CTTCTTCT 1 chr3R:29726548-29726668 ( 47) CTTCTTCT 1 chrX:18893597-18893717 ( 35) CTTCTTCT 1 chrX:11792842-11792962 ( 47) CTTCTTCT 1 chr3L:16865729-16865849 ( 22) CTTCTTCT 1 chr3L:4542483-4542603 ( 41) CTTCTTCT 1 chr3R:20592616-20592736 ( 37) CTTCTTCT 1 chr3L:5616618-5616738 ( 95) CTTCTTCT 1 chr3R:31405702-31405822 ( 67) CTTCTTCT 1 chr2L:16352161-16352281 ( 38) CTTCTTCT 1 chr2L:19571577-19571697 ( 42) CTTCTTCT 1 chrX:9355825-9355945 ( 58) CTTCTTCT 1 chr2R:12150770-12150890 ( 42) CTTCTTCT 1 chr2R:13822845-13822965 ( 30) CTTCTTCT 1 chr3R:31580187-31580307 ( 71) CTTCTTCT 1 chr3L:1569767-1569887 ( 32) CTTCTTCT 1 chrX:20510143-20510263 ( 74) CTTCTTCT 1 chr3L:1034626-1034746 ( 38) CTTCTTCT 1 chr3L:1145713-1145833 ( 59) CTTCTTCT 1 chrX:5081630-5081750 ( 37) CTTCTTCT 1 chr3L:995794-995914 ( 26) CTTCTTCT 1 chr2L:8266820-8266940 ( 42) CTTCTTCT 1 chr3R:5632257-5632377 ( 69) CTTCTTCT 1 chr2L:8403060-8403180 ( 29) CTTCTTCT 1 chr2R:21250544-21250664 ( 34) CTTCTTCT 1 chrX:6804029-6804149 ( 76) CTTCTTCT 1 chrX:2269508-2269628 ( 37) CTTCTTCT 1 chr2R:14152433-14152553 ( 36) CTTCTTCT 1 chrX:13222208-13222328 ( 36) CTTCTTCT 1 chrX:1341633-1341753 ( 47) CTTCTTCT 1 chr2R:24133260-24133380 ( 44) CTTCTTCT 1 chr3R:14663115-14663235 ( 52) CTTCTTCT 1 chrX:21323565-21323685 ( 93) CTTCTTCT 1 chr2R:9881937-9882057 ( 9) CTTCTTCT 1 chrX:12028223-12028343 ( 89) CTTCTTCT 1 chr2L:11813279-11813399 ( 29) CTTCTTCT 1 chrX:4930750-4930870 ( 72) CTTCTTCT 1 chr3L:19085848-19085968 ( 46) CTTCTTCT 1 chr3R:21348521-21348641 ( 40) CTTCTTCT 1 chr3R:18199323-18199443 ( 18) CTTCTTCT 1 chr2L:12692482-12692602 ( 40) CTTCTTCT 1 chr3L:4627194-4627314 ( 39) CTTCCTCT 1 chrX:19261814-19261934 ( 33) CTTCCTCT 1 chr3R:16071812-16071932 ( 67) CTTCCTCT 1 chr2R:25010958-25011078 ( 59) CTTCCTCT 1 chrX:9686996-9687116 ( 81) CTTCCTCT 1 chr3R:20027965-20028085 ( 45) CTTCCTCT 1 chr3R:27111925-27112045 ( 38) CTTCCTCT 1 chrX:21338176-21338296 ( 58) CTTCCTCT 1 chr3R:30880351-30880471 ( 59) CTTCCTCT 1 chr3R:14736711-14736831 ( 44) CTTCCTCT 1 chrX:8907543-8907663 ( 42) CTTCCTCT 1 chr2L:19498114-19498234 ( 65) CTTCCTCT 1 chr2R:11651023-11651143 ( 54) CTTCCTCT 1 chr2R:16196243-16196363 ( 40) CTTCCTCT 1 chr3L:347779-347899 ( 81) CTTCCTCT 1 chr3L:22288151-22288271 ( 16) CTTCCTCT 1 chr3R:19642427-19642547 ( 55) CTTCCTCT 1 chr3L:211348-211468 ( 74) CTTCCTCT 1 chr3R:29138529-29138649 ( 44) CTTCCTCT 1 chr2R:9399887-9400007 ( 29) CTTCCTCT 1 chr3L:17529600-17529720 ( 38) CTTCCTCT 1 chr2L:18948835-18948955 ( 52) CTTCCTCT 1 chr2R:16867264-16867384 ( 34) CTTCCTCT 1 chrX:17077106-17077226 ( 30) CTTCCTCT 1 chr2L:18448649-18448769 ( 76) CTTCCTCT 1 chr3R:21660342-21660462 ( 76) CTTCCTCT 1 chr3R:5612721-5612841 ( 71) CTGCTTCT 1 chr3R:21097298-21097418 ( 71) CTGCTTCT 1 chr3L:652808-652928 ( 47) CTGCTTCT 1 chr2L:4968867-4968987 ( 33) CTGCTTCT 1 chrX:11453737-11453857 ( 67) CTGCTTCT 1 chr3R:21632270-21632390 ( 72) CTGCTTCT 1 chrX:19788231-19788351 ( 39) CTGCTTCT 1 chrX:8060624-8060744 ( 41) CTGCTTCT 1 chr3R:10134122-10134242 ( 42) CTGCCTCT 1 chr3R:25983363-25983483 ( 51) CTGCCTCT 1 chrX:13616122-13616242 ( 36) CTTCGTCT 1 chr3L:6925986-6926106 ( 87) CTTCGTCT 1 chr2L:5300485-5300605 ( 9) TTTCTTCT 1 chr2L:3159317-3159437 ( 89) TTTCTTCT 1 chr3L:7156353-7156473 ( 113) TTTCCTCT 1 chr2R:16612095-16612215 ( 5) TTTCCTCT 1 chr3R:11237725-11237845 ( 65) CTTGTTCT 1 chrX:4104167-4104287 ( 16) CTTCTTTT 1 chr3R:16275994-16276114 ( 17) CTTTTTCT 1 chrX:2448168-2448288 ( 16) CTGCGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCTTCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.08844 E= 6.6e-193 -1368 214 -1368 -320 -1368 -1368 -1368 183 -1368 -1368 -143 171 -1368 216 -489 -520 -1368 5 -331 141 -1368 -1368 -1368 183 -1368 217 -1368 -520 -1368 -1368 -1368 183 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCTTCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 131 E= 6.6e-193 0.000000 0.969466 0.000000 0.030534 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.083969 0.916031 0.000000 0.984733 0.007634 0.007634 0.000000 0.229008 0.022901 0.748092 0.000000 0.000000 0.000000 1.000000 0.000000 0.992366 0.000000 0.007634 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTCTTCT MEME-2 regular expression -------------------------------------------------------------------------------- CTTC[TC]TCT -------------------------------------------------------------------------------- Time 13.34 secs. ******************************************************************************** ******************************************************************************** MOTIF YTGYTGYT MEME-3 width = 8 sites = 86 llr = 685 E-value = 2.4e-032 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTGYTGYT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 5::4::6: probability G ::8::9:1 matrix T 5a26a149 bits 2.2 2.0 1.7 * ** 1.5 ** ** * Relative 1.3 ** ** * Entropy 1.1 ******** (11.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGTTGCT consensus T C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGYTGYT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:8451035-8451155 86 1.57e-05 CAGTCAATTG CTGTTGCT GACGTTGTCG chr3L:15512081-15512201 48 1.57e-05 TTTTAGAAAT CTGTTGCT CATACTCCCC chr2R:9145189-9145309 82 1.57e-05 AGTCAATCAG CTGTTGCT GCTTGCATTT chr3L:19635266-19635386 46 1.57e-05 CAgctttgtg ctgttgct gcttcttctt chr3L:1302376-1302496 105 1.57e-05 CGGCGGAGGA CTGTTGCT TGCGTGGG chr3L:16865729-16865849 6 1.57e-05 ACAAA CTGTTGCT TCTTCGCTCT chr3R:9679899-9680019 43 1.57e-05 GTTGGCAACA CTGTTGCT GTGACAACGC chrX:20510143-20510263 93 1.57e-05 cgccatttga ctgttgct ttctttcgtt chrX:17077106-17077226 6 1.57e-05 GACTG CTGTTGCT GGTAGTGCTG chr2L:21846839-21846959 17 3.56e-05 CGGCATTTTG TTGTTGCT GCCGGGCAGC chrX:7710000-7710120 11 3.56e-05 TTTCTTGTTA TTGTTGCT TTTGATAAAT chr3R:25662071-25662191 34 3.56e-05 CGTGTTGTTG TTGTTGCT GTGAATAAGT chr3L:4627194-4627314 58 3.56e-05 CTGTGTGTTT TTGTTGCT TTTTCGTTCG chr3R:21097298-21097418 28 3.56e-05 tagcttgttg ttgttgct gcctcctttt chrX:13625160-13625280 7 3.56e-05 GAATTG TTGTTGCT AAAAATAGCA chrX:19479858-19479978 20 3.56e-05 AGAATTCATG TTGTTGCT TTCGGTGGTG chr2R:17270049-17270169 20 3.56e-05 AGTTGAGCAT TTGTTGCT CGGActtttc chrX:4936935-4937055 27 3.56e-05 CTGCTCTATG TTGTTGCT GTTTCACTTG chr3R:29726548-29726668 64 3.56e-05 TTCTTGCCGT TTGTTGCT TTTGCCATTT chr2L:19571577-19571697 89 3.56e-05 AAGCCAGTTG TTGTTGCT GTAATTTTCA chr2R:21250544-21250664 72 3.56e-05 tgctgttttg ttgttgct tatttcgctg chr2R:16867264-16867384 113 3.56e-05 GATTGATGCC TTGTTGCT chr3L:19085848-19085968 75 3.56e-05 GCAATGGTAT TTGTTGCT GTTACACACA chrX:840478-840598 55 4.80e-05 TTTTGGGctg ctgctgct tcttccccat chr3R:21156945-21157065 73 4.80e-05 CAACAACGTC CTGCTGCT CCTCTTCTTC chr3L:18819699-18819819 62 4.80e-05 TCACGCATTG CTGCTGCT TCTTCTTCTA chrX:2292850-2292970 45 4.80e-05 cttgcacttg ctgctgct ggtactgctg chr3R:25983363-25983483 43 4.80e-05 AAAAATGTAC CTGCTGCT CTGCCTCTTC chr2R:19142441-19142561 79 4.80e-05 TCTTCTTTAA CTGCTGCT TCTTCTTCCT chr3L:5616618-5616738 54 4.80e-05 CTCGgctctg ctgctgct gcttcttctt chr2R:13822845-13822965 51 4.80e-05 ctccacttct ctgctgct gtgcttcttc chr3R:17805170-17805290 45 4.80e-05 TTATTAACAG CTGCTGCT TCATTTTGGG chr3L:1145713-1145833 17 4.80e-05 gctgctgctg ctgctgct tcttcttatt chr3L:17529600-17529720 51 4.80e-05 CCTCTTCTTC CTGCTGCT GCACCGCCGT chr3R:7186388-7186508 75 4.80e-05 gcagcagcag ctgctgcT GGCTGGGCCG chr3R:6407277-6407397 32 4.80e-05 GAAAAAGAGG CTGCTGCT TGAAAAATAA chrX:4930750-4930870 57 4.80e-05 ACGAGAGCCA CTGCTGCT ACTGCTGCTT chr3R:18199323-18199443 9 4.80e-05 CTGTTCGG CTGCTGCT GCTTCTTCTT chr3L:1568277-1568397 1 6.37e-05 . TTGCTGCT TCGAAGTCGT chr3R:10682764-10682884 40 6.37e-05 TCGTGCAGAT TTGCTGCT GTGTGGCCTT chr2L:19158804-19158924 44 6.37e-05 TTGTTTAGTT TTGCTGCT CATTCTTCTT chr2R:11640338-11640458 43 6.37e-05 ctcaGCTGTG TTGCTGCT GCTTCTTCTT chrX:7944423-7944543 24 6.37e-05 TTTTACTTCT TTGCTGCT AATGAaaggg chr2L:21033480-21033600 36 8.36e-05 GTAATTTTTT CTGTTGTT TCTTTTTGCC chrX:6352598-6352718 9 8.36e-05 TGTCGCTT CTGTTGTT AAAACCTTCG chr3L:2766181-2766301 91 8.36e-05 GCGCACgttg ctgttgtt gttgccgtgg chr3L:22743295-22743415 99 8.36e-05 TTATTGTGAG Ctgttgtt gttcttattg chr3L:16100247-16100367 20 8.36e-05 ACTTTGCCGG CTGTTGTT ACGTTGTGTC chr3R:17714498-17714618 69 1.09e-04 GTGCGGCCTT TTGTTGTT ATTGTTTTGC chr2L:5300485-5300605 30 1.09e-04 CCAATGCTTG TTGTTGTT GTGGCTGTTT chrX:14825558-14825678 102 1.09e-04 TTCGTGtttt ttgttgtt ttttgggttt chr3R:20057692-20057812 111 1.09e-04 CTATTGTTAA TTGTTGTT AA chrX:5690255-5690375 51 1.09e-04 GGCTCTATTG TTGTTGTT TCAGGTGTGG chr2R:17723288-17723408 104 1.09e-04 AGCCGAAATT TTGTTGTT TTTCGGTTG chr3L:1569985-1570105 95 1.09e-04 CAGCAGCAAC TTGTTGTT GCTTCTTCTT chr2R:11651023-11651143 107 1.09e-04 ttgtttgttc ttgttgtt tTTGCT chrX:18893597-18893717 70 1.09e-04 ATCTTCGTGT TTGTTGTT ATCGATAGTC chrX:6804029-6804149 19 1.09e-04 CGCGCACCCT ttgttgtt gcatttgtag chr2L:11066538-11066658 42 1.25e-04 tcttctcccc ctgctgtt gcttcttctt chr2R:15682670-15682790 7 1.45e-04 TAAAAT TTGCTGTT TTAGTATTTT chr3R:10134122-10134242 70 1.64e-04 TTTGCCGCCT CTTTTGCT GCACTGCTTC chr2L:16352161-16352281 100 1.64e-04 TTTCACTGTA CTTTTGCT CTGCGTTGGC chr2L:19158027-19158147 8 2.04e-04 TCGGGCt cttctgct gcgcttcgtt chrX:5081630-5081750 72 2.04e-04 TGGGCTTCTT CTTCTGCT TTAGTTATTA chr3L:16419220-16419340 113 2.36e-04 TGGTGATCAG CTGTTTCT chr3L:1034626-1034746 90 2.80e-04 ACTCGCGCTG CTTTTGTT TTTCACACGC chr2L:8266820-8266940 27 2.80e-04 AAGGCAGTtt cttttgtt acttcttctt chrX:21323565-21323685 104 2.80e-04 ttcttcttct cttttgtt gtcttGTAC chrX:8060624-8060744 66 2.80e-04 CTTTCGTTCG CTTTTGTT CCACCACCGA chrX:12028223-12028343 15 3.21e-04 TTTATGCAAT TTGTTGCG GCTGAGTAGG chrX:5518465-5518585 75 3.46e-04 CCTTCTGGCT CTGCTTCT TCCCTTCTTC chrX:9686996-9687116 5 3.46e-04 GTCC CTGCTGCG CCTCGCGTGC chr3R:30880351-30880471 68 3.46e-04 GCTTCCTCTT CTGCTTCT TCAGCTTTTT chr3R:5612721-5612841 2 3.78e-04 C TTTTTGTT AATGTTTCCG chrX:1893615-1893735 6 3.78e-04 TTTAT TTTTTGTT GGGATGGATC chr3L:20347888-20348008 21 3.78e-04 TCCAAATTCA TTTTTGTT TACTATCTTC chr3L:1569767-1569887 93 3.78e-04 GCTGCATATG TTTTTGTT TTTGCCTGAA chrX:13222208-13222328 4 3.78e-04 TTG TTTTTGTT TTTAGAATTT chrX:11817419-11817539 108 4.29e-04 AGTTGAGAAT TTGCTGCG CGTCT chrX:2010650-2010770 54 4.29e-04 TGCTTCTTCT TTGCTGCG TGGCGTTTTC chr2R:9881937-9882057 37 4.29e-04 ATTGGCGATT TTGCTGCG GACTATGAAT chr2L:4973949-4974069 45 4.70e-04 ATACGAACAG CTGTTTTT TCCAAACAGG chrX:13616122-13616242 19 4.70e-04 TTTTCGCTGC CTGTTTTT TTTATTCTTC chr2L:19498114-19498234 94 5.47e-04 GATCAAAAGT TTGTTTTT ACTCTACTGC chr3R:8343482-8343602 95 5.47e-04 ATGAAAGTGG TTGTTTTT ACCTATTTAA chr2L:12692482-12692602 83 5.79e-04 CGGCATCCAA CTGCTTTT TCAATAGGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGYTGYT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:8451035-8451155 1.6e-05 85_[+3]_27 chr3L:15512081-15512201 1.6e-05 47_[+3]_65 chr2R:9145189-9145309 1.6e-05 81_[+3]_31 chr3L:19635266-19635386 1.6e-05 45_[+3]_67 chr3L:1302376-1302496 1.6e-05 104_[+3]_8 chr3L:16865729-16865849 1.6e-05 5_[+3]_107 chr3R:9679899-9680019 1.6e-05 42_[+3]_70 chrX:20510143-20510263 1.6e-05 92_[+3]_20 chrX:17077106-17077226 1.6e-05 5_[+3]_107 chr2L:21846839-21846959 3.6e-05 16_[+3]_96 chrX:7710000-7710120 3.6e-05 10_[+3]_102 chr3R:25662071-25662191 3.6e-05 33_[+3]_79 chr3L:4627194-4627314 3.6e-05 57_[+3]_55 chr3R:21097298-21097418 3.6e-05 27_[+3]_85 chrX:13625160-13625280 3.6e-05 6_[+3]_106 chrX:19479858-19479978 3.6e-05 19_[+3]_93 chr2R:17270049-17270169 3.6e-05 19_[+3]_93 chrX:4936935-4937055 3.6e-05 26_[+3]_86 chr3R:29726548-29726668 3.6e-05 63_[+3]_49 chr2L:19571577-19571697 3.6e-05 88_[+3]_24 chr2R:21250544-21250664 3.6e-05 71_[+3]_41 chr2R:16867264-16867384 3.6e-05 112_[+3] chr3L:19085848-19085968 3.6e-05 74_[+3]_38 chrX:840478-840598 4.8e-05 54_[+3]_58 chr3R:21156945-21157065 4.8e-05 72_[+3]_40 chr3L:18819699-18819819 4.8e-05 61_[+3]_51 chrX:2292850-2292970 4.8e-05 44_[+3]_68 chr3R:25983363-25983483 4.8e-05 42_[+3]_70 chr2R:19142441-19142561 4.8e-05 78_[+3]_34 chr3L:5616618-5616738 4.8e-05 53_[+3]_59 chr2R:13822845-13822965 4.8e-05 50_[+3]_62 chr3R:17805170-17805290 4.8e-05 44_[+3]_68 chr3L:1145713-1145833 4.8e-05 16_[+3]_96 chr3L:17529600-17529720 4.8e-05 50_[+3]_62 chr3R:7186388-7186508 4.8e-05 74_[+3]_38 chr3R:6407277-6407397 4.8e-05 31_[+3]_81 chrX:4930750-4930870 4.8e-05 56_[+3]_56 chr3R:18199323-18199443 4.8e-05 8_[+3]_104 chr3L:1568277-1568397 6.4e-05 [+3]_112 chr3R:10682764-10682884 6.4e-05 39_[+3]_73 chr2L:19158804-19158924 6.4e-05 43_[+3]_69 chr2R:11640338-11640458 6.4e-05 42_[+3]_70 chrX:7944423-7944543 6.4e-05 23_[+3]_89 chr2L:21033480-21033600 8.4e-05 35_[+3]_77 chrX:6352598-6352718 8.4e-05 8_[+3]_104 chr3L:2766181-2766301 8.4e-05 90_[+3]_22 chr3L:22743295-22743415 8.4e-05 98_[+3]_14 chr3L:16100247-16100367 8.4e-05 19_[+3]_93 chr3R:17714498-17714618 0.00011 68_[+3]_44 chr2L:5300485-5300605 0.00011 29_[+3]_83 chrX:14825558-14825678 0.00011 101_[+3]_11 chr3R:20057692-20057812 0.00011 110_[+3]_2 chrX:5690255-5690375 0.00011 50_[+3]_62 chr2R:17723288-17723408 0.00011 103_[+3]_9 chr3L:1569985-1570105 0.00011 94_[+3]_18 chr2R:11651023-11651143 0.00011 106_[+3]_6 chrX:18893597-18893717 0.00011 69_[+3]_43 chrX:6804029-6804149 0.00011 18_[+3]_94 chr2L:11066538-11066658 0.00012 41_[+3]_71 chr2R:15682670-15682790 0.00014 6_[+3]_106 chr3R:10134122-10134242 0.00016 69_[+3]_43 chr2L:16352161-16352281 0.00016 99_[+3]_13 chr2L:19158027-19158147 0.0002 7_[+3]_105 chrX:5081630-5081750 0.0002 71_[+3]_41 chr3L:16419220-16419340 0.00024 112_[+3] chr3L:1034626-1034746 0.00028 89_[+3]_23 chr2L:8266820-8266940 0.00028 26_[+3]_86 chrX:21323565-21323685 0.00028 103_[+3]_9 chrX:8060624-8060744 0.00028 65_[+3]_47 chrX:12028223-12028343 0.00032 14_[+3]_98 chrX:5518465-5518585 0.00035 74_[+3]_38 chrX:9686996-9687116 0.00035 4_[+3]_108 chr3R:30880351-30880471 0.00035 67_[+3]_45 chr3R:5612721-5612841 0.00038 1_[+3]_111 chrX:1893615-1893735 0.00038 5_[+3]_107 chr3L:20347888-20348008 0.00038 20_[+3]_92 chr3L:1569767-1569887 0.00038 92_[+3]_20 chrX:13222208-13222328 0.00038 3_[+3]_109 chrX:11817419-11817539 0.00043 107_[+3]_5 chrX:2010650-2010770 0.00043 53_[+3]_59 chr2R:9881937-9882057 0.00043 36_[+3]_76 chr2L:4973949-4974069 0.00047 44_[+3]_68 chrX:13616122-13616242 0.00047 18_[+3]_94 chr2L:19498114-19498234 0.00055 93_[+3]_19 chr3R:8343482-8343602 0.00055 94_[+3]_18 chr2L:12692482-12692602 0.00058 82_[+3]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGYTGYT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTGYTGYT width=8 seqs=86 chr3L:8451035-8451155 ( 86) CTGTTGCT 1 chr3L:15512081-15512201 ( 48) CTGTTGCT 1 chr2R:9145189-9145309 ( 82) CTGTTGCT 1 chr3L:19635266-19635386 ( 46) CTGTTGCT 1 chr3L:1302376-1302496 ( 105) CTGTTGCT 1 chr3L:16865729-16865849 ( 6) CTGTTGCT 1 chr3R:9679899-9680019 ( 43) CTGTTGCT 1 chrX:20510143-20510263 ( 93) CTGTTGCT 1 chrX:17077106-17077226 ( 6) CTGTTGCT 1 chr2L:21846839-21846959 ( 17) TTGTTGCT 1 chrX:7710000-7710120 ( 11) TTGTTGCT 1 chr3R:25662071-25662191 ( 34) TTGTTGCT 1 chr3L:4627194-4627314 ( 58) TTGTTGCT 1 chr3R:21097298-21097418 ( 28) TTGTTGCT 1 chrX:13625160-13625280 ( 7) TTGTTGCT 1 chrX:19479858-19479978 ( 20) TTGTTGCT 1 chr2R:17270049-17270169 ( 20) TTGTTGCT 1 chrX:4936935-4937055 ( 27) TTGTTGCT 1 chr3R:29726548-29726668 ( 64) TTGTTGCT 1 chr2L:19571577-19571697 ( 89) TTGTTGCT 1 chr2R:21250544-21250664 ( 72) TTGTTGCT 1 chr2R:16867264-16867384 ( 113) TTGTTGCT 1 chr3L:19085848-19085968 ( 75) TTGTTGCT 1 chrX:840478-840598 ( 55) CTGCTGCT 1 chr3R:21156945-21157065 ( 73) CTGCTGCT 1 chr3L:18819699-18819819 ( 62) CTGCTGCT 1 chrX:2292850-2292970 ( 45) CTGCTGCT 1 chr3R:25983363-25983483 ( 43) CTGCTGCT 1 chr2R:19142441-19142561 ( 79) CTGCTGCT 1 chr3L:5616618-5616738 ( 54) CTGCTGCT 1 chr2R:13822845-13822965 ( 51) CTGCTGCT 1 chr3R:17805170-17805290 ( 45) CTGCTGCT 1 chr3L:1145713-1145833 ( 17) CTGCTGCT 1 chr3L:17529600-17529720 ( 51) CTGCTGCT 1 chr3R:7186388-7186508 ( 75) CTGCTGCT 1 chr3R:6407277-6407397 ( 32) CTGCTGCT 1 chrX:4930750-4930870 ( 57) CTGCTGCT 1 chr3R:18199323-18199443 ( 9) CTGCTGCT 1 chr3L:1568277-1568397 ( 1) TTGCTGCT 1 chr3R:10682764-10682884 ( 40) TTGCTGCT 1 chr2L:19158804-19158924 ( 44) TTGCTGCT 1 chr2R:11640338-11640458 ( 43) TTGCTGCT 1 chrX:7944423-7944543 ( 24) TTGCTGCT 1 chr2L:21033480-21033600 ( 36) CTGTTGTT 1 chrX:6352598-6352718 ( 9) CTGTTGTT 1 chr3L:2766181-2766301 ( 91) CTGTTGTT 1 chr3L:22743295-22743415 ( 99) CTGTTGTT 1 chr3L:16100247-16100367 ( 20) CTGTTGTT 1 chr3R:17714498-17714618 ( 69) TTGTTGTT 1 chr2L:5300485-5300605 ( 30) TTGTTGTT 1 chrX:14825558-14825678 ( 102) TTGTTGTT 1 chr3R:20057692-20057812 ( 111) TTGTTGTT 1 chrX:5690255-5690375 ( 51) TTGTTGTT 1 chr2R:17723288-17723408 ( 104) TTGTTGTT 1 chr3L:1569985-1570105 ( 95) TTGTTGTT 1 chr2R:11651023-11651143 ( 107) TTGTTGTT 1 chrX:18893597-18893717 ( 70) TTGTTGTT 1 chrX:6804029-6804149 ( 19) TTGTTGTT 1 chr2L:11066538-11066658 ( 42) CTGCTGTT 1 chr2R:15682670-15682790 ( 7) TTGCTGTT 1 chr3R:10134122-10134242 ( 70) CTTTTGCT 1 chr2L:16352161-16352281 ( 100) CTTTTGCT 1 chr2L:19158027-19158147 ( 8) CTTCTGCT 1 chrX:5081630-5081750 ( 72) CTTCTGCT 1 chr3L:16419220-16419340 ( 113) CTGTTTCT 1 chr3L:1034626-1034746 ( 90) CTTTTGTT 1 chr2L:8266820-8266940 ( 27) CTTTTGTT 1 chrX:21323565-21323685 ( 104) CTTTTGTT 1 chrX:8060624-8060744 ( 66) CTTTTGTT 1 chrX:12028223-12028343 ( 15) TTGTTGCG 1 chrX:5518465-5518585 ( 75) CTGCTTCT 1 chrX:9686996-9687116 ( 5) CTGCTGCG 1 chr3R:30880351-30880471 ( 68) CTGCTTCT 1 chr3R:5612721-5612841 ( 2) TTTTTGTT 1 chrX:1893615-1893735 ( 6) TTTTTGTT 1 chr3L:20347888-20348008 ( 21) TTTTTGTT 1 chr3L:1569767-1569887 ( 93) TTTTTGTT 1 chrX:13222208-13222328 ( 4) TTTTTGTT 1 chrX:11817419-11817539 ( 108) TTGCTGCG 1 chrX:2010650-2010770 ( 54) TTGCTGCG 1 chr2R:9881937-9882057 ( 37) TTGCTGCG 1 chr2L:4973949-4974069 ( 45) CTGTTTTT 1 chrX:13616122-13616242 ( 19) CTGTTTTT 1 chr2L:19498114-19498234 ( 94) TTGTTTTT 1 chr3R:8343482-8343602 ( 95) TTGTTTTT 1 chr2L:12692482-12692602 ( 83) CTGCTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGYTGYT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.87754 E= 2.4e-032 -1307 125 -1307 76 -1307 -1307 -1307 183 -1307 -1307 190 -89 -1307 71 -1307 119 -1307 -1307 -1307 183 -1307 -1307 200 -159 -1307 154 -1307 36 -1307 -1307 -196 175 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGYTGYT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 86 E= 2.4e-032 0.000000 0.523256 0.000000 0.476744 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.848837 0.151163 0.000000 0.360465 0.000000 0.639535 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.906977 0.093023 0.000000 0.639535 0.000000 0.360465 0.000000 0.000000 0.058140 0.941860 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGYTGYT MEME-3 regular expression -------------------------------------------------------------------------------- [CT]TG[TC]TG[CT]T -------------------------------------------------------------------------------- Time 19.15 secs. ******************************************************************************** ******************************************************************************** MOTIF AGMAGMAG MEME-4 width = 8 sites = 56 llr = 459 E-value = 3.2e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGMAGMAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A a:4a2493 pos.-specific C ::6::6:: probability G :a::8:17 matrix T :::::::: bits 2.2 * 2.0 ** * 1.7 ** * 1.5 ** * Relative 1.3 ** ** * Entropy 1.1 ******** (11.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGCAGCAG consensus A A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMAGMAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:11613202-11613322 60 1.15e-05 aagcagcggc agcagcag cCGGAATCAG chr3L:639976-640096 72 1.15e-05 aggaagaagc agcagcag cagaataagc chr3R:10682764-10682884 80 1.15e-05 aagaagaaga agcagcag aagCGGCAGA chr2L:2226919-2227039 54 1.15e-05 GAGGAAGAAG AGCAGCAG CAGAAAAACA chrX:12905491-12905611 57 1.15e-05 aagaggaaga agcagcag CTTGAGGCGG chrX:16792355-16792475 82 1.15e-05 aagaagaagc agcagcag aaaaggagca chr2R:19142227-19142347 51 1.15e-05 aagaagaagc agcagcag cgaagcagac chrX:6684349-6684469 72 1.15e-05 AAGAAGAGGA AGCAGCAG CAAGAGTTAA chrX:8661019-8661139 104 1.15e-05 AAGAAGAAGC AGCAGCAG AATGGCAGC chr3R:7186388-7186508 67 1.15e-05 aagaagaagc agcagcag ctgctgcTGG chrX:12028223-12028343 43 1.15e-05 AAGAAGAAGA AGCAGCAG CGGCGGAATC chr3R:6407277-6407397 78 1.15e-05 GAAGAAGAGC AGCAGCAG CCGTCGCGAG chr2L:4882673-4882793 77 1.15e-05 aggagcgggc agcagcag CGGCAATGCG chrX:8058051-8058171 41 2.56e-05 GACGTAGGga agaagcag agttgcggaa chrX:1874015-1874135 60 2.56e-05 CGGAGCAGCA AGAAGCAG AGGCGGGGGC chr2R:16612095-16612215 94 2.56e-05 cagcaacaga agaagcag aaTTTCGGTC chr2R:11604553-11604673 46 2.56e-05 TTATGgaaga agaagcag cggaggagga chr2L:19493564-19493684 110 3.98e-05 AGAGATTAAA AGCAGAAG CAA chr3L:20497880-20498000 90 3.98e-05 cagcagcttc agcagaag caaagggcaa chr3R:29592058-29592178 59 5.36e-05 cGGAGAGAAG AGCAGCAA GCGGAGGAAG chr3L:1569985-1570105 86 5.36e-05 TATCTCCGCC AGCAGCAA CTTGTTGTTG chr3R:4428641-4428761 72 5.36e-05 aagcagcagt agcagcaa cagcaCATGT chrX:8676620-8676740 65 7.10e-05 aagaagaaga agaagaag aGTGTTTCCC chrX:13625160-13625280 47 7.10e-05 GGCACgaaga agaagaag acgacggcaa chr2R:12184250-12184370 82 7.10e-05 agaatagcat agaagaag aGTATTGAAA chrX:19221126-19221246 56 7.10e-05 TCGTCgaata agaagaag aaagagaaaa chrX:18836415-18836535 49 7.10e-05 CAGCCCACga agaagaag aagaagaaga chrX:13222208-13222328 106 7.10e-05 cagaggagaa agaagaag aGGCAGT chr3L:3225926-3226046 73 7.10e-05 gcgagcggaa agaagaag agcgcagaag chr3L:21176415-21176535 61 7.10e-05 gcaaagtaaa agaagaag agaaagagga chr3R:10884993-10885113 45 8.79e-05 CGAAGAACCG AGAAGCAA ACTTTTGTGC chr2L:19134006-19134126 52 1.19e-04 TGAAAGCATC AGCAGAAA AGGCGGCAAG chrX:7944423-7944543 57 1.19e-04 caagaagaag agcaacag caGGGTGCAC chr2R:12437743-12437863 48 1.66e-04 ATAAGTGCAG AGAAACAG GAGAAGGAGG chr3L:539601-539721 90 1.66e-04 GAACGGCCTG AGAAGAAA GACAAAGCAT chrX:11793044-11793164 55 1.66e-04 AGAGGAGGAA AGAAGAAA AAAGCGGAAA chr3R:24318967-24319087 94 1.66e-04 AAAGAATTTT AGAAGAAA GCAACTGCAA chrX:11817419-11817539 43 1.66e-04 AGGAAGACGA AGAAGAAA CATACAAAAA chr2R:14152433-14152553 75 1.66e-04 TGCGATGGTA AGAAACAG CTGGGAATGC chrX:1341633-1341753 2 1.66e-04 a agaagaaa aggaagaaca chr3L:4252265-4252385 17 1.83e-04 GAGAGACAAC AGCAAAAG GTATTGTAAA chrX:17122807-17122927 104 1.83e-04 atcgaatgaa agcaaaag ctaaaatgc chr3L:2635041-2635161 87 1.83e-04 AAGAAGCATC AGCAAAAG TATCGTGATG chr3L:1568277-1568397 71 1.95e-04 AACGAAGAGG AGAAGCGG AGGGGGCGAG chr3R:17680337-17680457 61 1.95e-04 AAGAAGCAGC AGAAGCGG TGGCGGCAGA chrX:11390196-11390316 113 2.07e-04 gagaagagga agcagagg chrX:1966484-1966604 47 2.23e-04 aacaaaaaac agcaacaa caaacGCAGA chrX:21338176-21338296 84 2.23e-04 CGTCCAGTgc agcaacaa caccaacacc chrX:5340118-5340238 104 2.23e-04 CACGCTGCCG AGCAACAA ATTGAGTCA chrX:6700266-6700386 19 2.56e-04 agcatagcaa agcagcga agtcaacgtc chr3L:5360178-5360298 40 2.56e-04 TCCGCGAGAG AGCAGCGA AGAAGAGGAA chr3L:6925986-6926106 79 2.79e-04 AAGAAGAAGC AGCAGCCG CTTCGTCTGT chrX:16599414-16599534 71 2.79e-04 CAGAGCGTGA AGAAGAGG AACGAAGAAT chrX:19480496-19480616 105 2.79e-04 cgaagagagg agcagccg cagcCTTG chr2L:19158804-19158924 25 3.00e-04 CAAAAGCACC AGAAACAA ATTGTTTAGT chrX:11601385-11601505 60 3.20e-04 GAAAAAGACC AGCAAAAA AAGAAGAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMAGMAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:11613202-11613322 1.1e-05 59_[+4]_53 chr3L:639976-640096 1.1e-05 71_[+4]_41 chr3R:10682764-10682884 1.1e-05 79_[+4]_33 chr2L:2226919-2227039 1.1e-05 53_[+4]_59 chrX:12905491-12905611 1.1e-05 56_[+4]_56 chrX:16792355-16792475 1.1e-05 81_[+4]_31 chr2R:19142227-19142347 1.1e-05 50_[+4]_62 chrX:6684349-6684469 1.1e-05 71_[+4]_41 chrX:8661019-8661139 1.1e-05 103_[+4]_9 chr3R:7186388-7186508 1.1e-05 66_[+4]_46 chrX:12028223-12028343 1.1e-05 42_[+4]_70 chr3R:6407277-6407397 1.1e-05 77_[+4]_35 chr2L:4882673-4882793 1.1e-05 76_[+4]_36 chrX:8058051-8058171 2.6e-05 40_[+4]_72 chrX:1874015-1874135 2.6e-05 59_[+4]_53 chr2R:16612095-16612215 2.6e-05 93_[+4]_19 chr2R:11604553-11604673 2.6e-05 45_[+4]_67 chr2L:19493564-19493684 4e-05 109_[+4]_3 chr3L:20497880-20498000 4e-05 89_[+4]_23 chr3R:29592058-29592178 5.4e-05 58_[+4]_54 chr3L:1569985-1570105 5.4e-05 85_[+4]_27 chr3R:4428641-4428761 5.4e-05 71_[+4]_41 chrX:8676620-8676740 7.1e-05 64_[+4]_48 chrX:13625160-13625280 7.1e-05 46_[+4]_66 chr2R:12184250-12184370 7.1e-05 81_[+4]_31 chrX:19221126-19221246 7.1e-05 55_[+4]_57 chrX:18836415-18836535 7.1e-05 48_[+4]_64 chrX:13222208-13222328 7.1e-05 105_[+4]_7 chr3L:3225926-3226046 7.1e-05 72_[+4]_40 chr3L:21176415-21176535 7.1e-05 60_[+4]_52 chr3R:10884993-10885113 8.8e-05 44_[+4]_68 chr2L:19134006-19134126 0.00012 51_[+4]_61 chrX:7944423-7944543 0.00012 56_[+4]_56 chr2R:12437743-12437863 0.00017 47_[+4]_65 chr3L:539601-539721 0.00017 89_[+4]_23 chrX:11793044-11793164 0.00017 54_[+4]_58 chr3R:24318967-24319087 0.00017 93_[+4]_19 chrX:11817419-11817539 0.00017 42_[+4]_70 chr2R:14152433-14152553 0.00017 74_[+4]_38 chrX:1341633-1341753 0.00017 1_[+4]_111 chr3L:4252265-4252385 0.00018 16_[+4]_96 chrX:17122807-17122927 0.00018 103_[+4]_9 chr3L:2635041-2635161 0.00018 86_[+4]_26 chr3L:1568277-1568397 0.00019 70_[+4]_42 chr3R:17680337-17680457 0.00019 60_[+4]_52 chrX:11390196-11390316 0.00021 112_[+4] chrX:1966484-1966604 0.00022 46_[+4]_66 chrX:21338176-21338296 0.00022 83_[+4]_29 chrX:5340118-5340238 0.00022 103_[+4]_9 chrX:6700266-6700386 0.00026 18_[+4]_94 chr3L:5360178-5360298 0.00026 39_[+4]_73 chr3L:6925986-6926106 0.00028 78_[+4]_34 chrX:16599414-16599534 0.00028 70_[+4]_42 chrX:19480496-19480616 0.00028 104_[+4]_8 chr2L:19158804-19158924 0.0003 24_[+4]_88 chrX:11601385-11601505 0.00032 59_[+4]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMAGMAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGMAGMAG width=8 seqs=56 chr2R:11613202-11613322 ( 60) AGCAGCAG 1 chr3L:639976-640096 ( 72) AGCAGCAG 1 chr3R:10682764-10682884 ( 80) AGCAGCAG 1 chr2L:2226919-2227039 ( 54) AGCAGCAG 1 chrX:12905491-12905611 ( 57) AGCAGCAG 1 chrX:16792355-16792475 ( 82) AGCAGCAG 1 chr2R:19142227-19142347 ( 51) AGCAGCAG 1 chrX:6684349-6684469 ( 72) AGCAGCAG 1 chrX:8661019-8661139 ( 104) AGCAGCAG 1 chr3R:7186388-7186508 ( 67) AGCAGCAG 1 chrX:12028223-12028343 ( 43) AGCAGCAG 1 chr3R:6407277-6407397 ( 78) AGCAGCAG 1 chr2L:4882673-4882793 ( 77) AGCAGCAG 1 chrX:8058051-8058171 ( 41) AGAAGCAG 1 chrX:1874015-1874135 ( 60) AGAAGCAG 1 chr2R:16612095-16612215 ( 94) AGAAGCAG 1 chr2R:11604553-11604673 ( 46) AGAAGCAG 1 chr2L:19493564-19493684 ( 110) AGCAGAAG 1 chr3L:20497880-20498000 ( 90) AGCAGAAG 1 chr3R:29592058-29592178 ( 59) AGCAGCAA 1 chr3L:1569985-1570105 ( 86) AGCAGCAA 1 chr3R:4428641-4428761 ( 72) AGCAGCAA 1 chrX:8676620-8676740 ( 65) AGAAGAAG 1 chrX:13625160-13625280 ( 47) AGAAGAAG 1 chr2R:12184250-12184370 ( 82) AGAAGAAG 1 chrX:19221126-19221246 ( 56) AGAAGAAG 1 chrX:18836415-18836535 ( 49) AGAAGAAG 1 chrX:13222208-13222328 ( 106) AGAAGAAG 1 chr3L:3225926-3226046 ( 73) AGAAGAAG 1 chr3L:21176415-21176535 ( 61) AGAAGAAG 1 chr3R:10884993-10885113 ( 45) AGAAGCAA 1 chr2L:19134006-19134126 ( 52) AGCAGAAA 1 chrX:7944423-7944543 ( 57) AGCAACAG 1 chr2R:12437743-12437863 ( 48) AGAAACAG 1 chr3L:539601-539721 ( 90) AGAAGAAA 1 chrX:11793044-11793164 ( 55) AGAAGAAA 1 chr3R:24318967-24319087 ( 94) AGAAGAAA 1 chrX:11817419-11817539 ( 43) AGAAGAAA 1 chr2R:14152433-14152553 ( 75) AGAAACAG 1 chrX:1341633-1341753 ( 2) AGAAGAAA 1 chr3L:4252265-4252385 ( 17) AGCAAAAG 1 chrX:17122807-17122927 ( 104) AGCAAAAG 1 chr3L:2635041-2635161 ( 87) AGCAAAAG 1 chr3L:1568277-1568397 ( 71) AGAAGCGG 1 chr3R:17680337-17680457 ( 61) AGAAGCGG 1 chrX:11390196-11390316 ( 113) AGCAGAGG 1 chrX:1966484-1966604 ( 47) AGCAACAA 1 chrX:21338176-21338296 ( 84) AGCAACAA 1 chrX:5340118-5340238 ( 104) AGCAACAA 1 chrX:6700266-6700386 ( 19) AGCAGCGA 1 chr3L:5360178-5360298 ( 40) AGCAGCGA 1 chr3L:6925986-6926106 ( 79) AGCAGCCG 1 chrX:16599414-16599534 ( 71) AGAAGAGG 1 chrX:19480496-19480616 ( 105) AGCAGCCG 1 chr2L:19158804-19158924 ( 25) AGAAACAA 1 chrX:11601385-11601505 ( 60) AGCAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMAGMAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1998 E= 3.2e-009 188 -1245 -1245 -1245 -1245 -1245 214 -1245 65 137 -1245 -1245 188 -1245 -1245 -1245 -47 -1245 183 -1245 53 146 -1245 -1245 165 -263 -108 -1245 16 -1245 162 -1245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMAGMAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 3.2e-009 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.428571 0.571429 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.196429 0.000000 0.803571 0.000000 0.392857 0.607143 0.000000 0.000000 0.857143 0.035714 0.107143 0.000000 0.303571 0.000000 0.696429 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMAGMAG MEME-4 regular expression -------------------------------------------------------------------------------- AG[CA]AG[CA]A[GA] -------------------------------------------------------------------------------- Time 24.81 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACA MEME-5 width = 8 sites = 29 llr = 275 E-value = 2.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :919:91a pos.-specific C a19:a:9: probability G :::::1:: matrix T :::1:::: bits 2.2 * * 2.0 * * 1.7 * * ** 1.5 * ****** Relative 1.3 ******** Entropy 1.1 ******** (13.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:8676620-8676740 35 1.31e-05 agccaacgaa cacacaca taaagcagga chr3R:21097298-21097418 94 1.31e-05 ctTTCCTaca cacacaca ggcacactcg chrX:1966484-1966604 84 1.31e-05 GAAGAAGCAG CACACACA AAAAGTAGGT chr3R:9236358-9236478 17 1.31e-05 cgagagagCA CACACACA CACGTAAGAG chr3R:29592058-29592178 29 1.31e-05 cgcactcgca cacacaca accactcgca chr3L:7156353-7156473 10 1.31e-05 CCTGTCTCC CACACACA CACATACACG chrX:13616122-13616242 83 1.31e-05 cgcacgcaca cacacaca cacgcaAAGC chr3R:5464071-5464191 59 1.31e-05 ATAAACATAA CACACACA TAACGCACTC chr3L:6925986-6926106 28 1.31e-05 GGCGCACCTA CACACACA AGCGTAGGCG chr2R:11640338-11640458 21 1.31e-05 aatcagcgtt cacacaca cgcactcaGC chr2L:2226919-2227039 23 1.31e-05 CAAATTGTGC CACACACA CAAAACGAGG chr3L:19085848-19085968 87 1.31e-05 GTTGCTGTTA CACACACA CACACTCCCG chrX:8060624-8060744 10 1.31e-05 ctcactcga cacacaca cgcacacaca chr2R:11604553-11604673 1 1.31e-05 . cacacaca TATATATACT chr3L:16377793-16377913 78 4.00e-05 CAGCTGTCGC cacacgca cacactcgcg chr3R:21156945-21157065 57 4.00e-05 TAAAAAGTGG CAAACACA ACAACGTCCT chr3L:882980-883100 90 4.00e-05 AATTCCATGT CAAACACA CGCTCACATG chrX:17739052-17739172 96 4.00e-05 gcagcGTCAA CAAACACA AATACAAAAT chr3L:2766181-2766301 2 4.00e-05 T CACACGCA CTAAACTCGC chr3R:14742239-14742359 57 4.00e-05 Gcaacaacag caaacaca acaactgcag chrX:12028223-12028343 109 4.00e-05 GTTTGCTCCG CACACGCA GGGG chr3R:4428641-4428761 34 5.06e-05 AACAAACATG CCCACACA ACGACGATGG chr3R:25983363-25983483 65 5.06e-05 CTCTTCCTCC CCCACACA TGCTCACAGC chr3L:20347888-20348008 60 6.41e-05 TGGCAACTGA CACTCACA CCGAACGGCA chrX:8807440-8807560 41 6.41e-05 TCTTCCCTCT CACTCACA CTTCGATAGG chr2L:3159317-3159437 101 8.02e-05 TCTTCTCTTT CACACAAA CGTAATTGCA chr2R:6631851-6631971 110 8.02e-05 CCCTTTACGC CACACAAA TGT chr3R:20592616-20592736 16 1.02e-04 TGGAGGAATT CACACACG TGTGGTTGTG chrX:6684349-6684469 36 1.02e-04 CGCTATCGAT CGCACACA TGAGCAAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8676620-8676740 1.3e-05 34_[+5]_78 chr3R:21097298-21097418 1.3e-05 93_[+5]_19 chrX:1966484-1966604 1.3e-05 83_[+5]_29 chr3R:9236358-9236478 1.3e-05 16_[+5]_96 chr3R:29592058-29592178 1.3e-05 28_[+5]_84 chr3L:7156353-7156473 1.3e-05 9_[+5]_103 chrX:13616122-13616242 1.3e-05 82_[+5]_30 chr3R:5464071-5464191 1.3e-05 58_[+5]_54 chr3L:6925986-6926106 1.3e-05 27_[+5]_85 chr2R:11640338-11640458 1.3e-05 20_[+5]_92 chr2L:2226919-2227039 1.3e-05 22_[+5]_90 chr3L:19085848-19085968 1.3e-05 86_[+5]_26 chrX:8060624-8060744 1.3e-05 9_[+5]_103 chr2R:11604553-11604673 1.3e-05 [+5]_112 chr3L:16377793-16377913 4e-05 77_[+5]_35 chr3R:21156945-21157065 4e-05 56_[+5]_56 chr3L:882980-883100 4e-05 89_[+5]_23 chrX:17739052-17739172 4e-05 95_[+5]_17 chr3L:2766181-2766301 4e-05 1_[+5]_111 chr3R:14742239-14742359 4e-05 56_[+5]_56 chrX:12028223-12028343 4e-05 108_[+5]_4 chr3R:4428641-4428761 5.1e-05 33_[+5]_79 chr3R:25983363-25983483 5.1e-05 64_[+5]_48 chr3L:20347888-20348008 6.4e-05 59_[+5]_53 chrX:8807440-8807560 6.4e-05 40_[+5]_72 chr2L:3159317-3159437 8e-05 100_[+5]_12 chr2R:6631851-6631971 8e-05 109_[+5]_3 chr3R:20592616-20592736 0.0001 15_[+5]_97 chrX:6684349-6684469 0.0001 35_[+5]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACA width=8 seqs=29 chrX:8676620-8676740 ( 35) CACACACA 1 chr3R:21097298-21097418 ( 94) CACACACA 1 chrX:1966484-1966604 ( 84) CACACACA 1 chr3R:9236358-9236478 ( 17) CACACACA 1 chr3R:29592058-29592178 ( 29) CACACACA 1 chr3L:7156353-7156473 ( 10) CACACACA 1 chrX:13616122-13616242 ( 83) CACACACA 1 chr3R:5464071-5464191 ( 59) CACACACA 1 chr3L:6925986-6926106 ( 28) CACACACA 1 chr2R:11640338-11640458 ( 21) CACACACA 1 chr2L:2226919-2227039 ( 23) CACACACA 1 chr3L:19085848-19085968 ( 87) CACACACA 1 chrX:8060624-8060744 ( 10) CACACACA 1 chr2R:11604553-11604673 ( 1) CACACACA 1 chr3L:16377793-16377913 ( 78) CACACGCA 1 chr3R:21156945-21157065 ( 57) CAAACACA 1 chr3L:882980-883100 ( 90) CAAACACA 1 chrX:17739052-17739172 ( 96) CAAACACA 1 chr3L:2766181-2766301 ( 2) CACACGCA 1 chr3R:14742239-14742359 ( 57) CAAACACA 1 chrX:12028223-12028343 ( 109) CACACGCA 1 chr3R:4428641-4428761 ( 34) CCCACACA 1 chr3R:25983363-25983483 ( 65) CCCACACA 1 chr3L:20347888-20348008 ( 60) CACTCACA 1 chrX:8807440-8807560 ( 41) CACTCACA 1 chr2L:3159317-3159437 ( 101) CACACAAA 1 chr2R:6631851-6631971 ( 110) CACACAAA 1 chr3R:20592616-20592736 ( 16) CACACACG 1 chrX:6684349-6684469 ( 36) CGCACACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6156 E= 2.5e-007 -1150 218 -1150 -1150 172 -168 -271 -1150 -98 197 -1150 -1150 177 -1150 -1150 -202 -1150 218 -1150 -1150 172 -1150 -113 -1150 -198 208 -1150 -1150 183 -1150 -271 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 2.5e-007 0.000000 1.000000 0.000000 0.000000 0.896552 0.068966 0.034483 0.000000 0.137931 0.862069 0.000000 0.000000 0.931034 0.000000 0.000000 0.068966 0.000000 1.000000 0.000000 0.000000 0.896552 0.000000 0.103448 0.000000 0.068966 0.931034 0.000000 0.000000 0.965517 0.000000 0.034483 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-5 regular expression -------------------------------------------------------------------------------- CACACACA -------------------------------------------------------------------------------- Time 30.37 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:21176415-21176535 5.90e-05 60_[+1(1.74e-05)]_10_[+1(1.74e-05)]_\ 34 chr3R:18243196-18243316 3.59e-03 58_[+1(3.19e-05)]_7_[+1(1.74e-05)]_\ 39 chr2R:8951853-8951973 5.26e-04 83_[+1(1.74e-05)]_29 chr2R:11604553-11604673 1.57e-06 [+5(1.31e-05)]_34_[+1(1.74e-05)]_13_\ [+1(1.74e-05)]_1_[+4(1.15e-05)]_40 chr2L:12692482-12692602 6.60e-03 36_[+2(1.89e-05)]_76 chr3R:18199323-18199443 5.98e-03 8_[+3(4.80e-05)]_1_[+2(1.89e-05)]_\ 95 chr3R:8343482-8343602 1.58e-04 48_[+1(1.74e-05)]_64 chr3R:21348521-21348641 4.02e-02 39_[+2(1.89e-05)]_18_[+2(1.89e-05)]_\ 47 chrX:8060624-8060744 3.71e-04 9_[+5(1.31e-05)]_2_[+5(1.31e-05)]_\ 13_[+2(4.91e-05)]_72 chr3R:5670153-5670273 1.66e-03 47_[+1(1.74e-05)]_65 chr3L:19085848-19085968 1.48e-05 21_[+2(1.89e-05)]_16_[+2(1.89e-05)]_\ 21_[+3(3.56e-05)]_4_[+5(1.31e-05)]_26 chr2L:4882673-4882793 6.05e-04 34_[+1(3.19e-05)]_16_[+1(1.74e-05)]_\ 10_[+4(1.15e-05)]_36 chrX:4930750-4930870 8.99e-07 35_[+1(1.74e-05)]_13_[+3(4.80e-05)]_\ 7_[+2(1.89e-05)]_41 chr3R:29049475-29049595 2.53e-03 45_[+1(1.74e-05)]_67 chr3R:6407277-6407397 9.95e-06 31_[+3(4.80e-05)]_27_[+1(1.74e-05)]_\ [+4(1.15e-05)]_38 chr3L:16100247-16100367 5.44e-02 19_[+3(8.36e-05)]_93 chr2L:11813279-11813399 9.20e-03 28_[+2(1.89e-05)]_84 chrX:12028223-12028343 2.52e-08 33_[+1(1.74e-05)]_1_[+4(1.15e-05)]_\ 38_[+2(1.89e-05)]_12_[+5(4.00e-05)]_4 chr3L:3225926-3226046 6.12e-03 72_[+1(1.74e-05)]_5_[+1(1.74e-05)]_\ 27 chr3R:7902595-7902715 8.13e-04 54_[+1(1.74e-05)]_58 chr3R:7186388-7186508 1.65e-05 63_[+4(1.15e-05)]_3_[+3(4.80e-05)]_\ 38 chr3R:21660342-21660462 1.74e-03 75_[+2(3.38e-05)]_37 chrX:19788231-19788351 6.93e-02 38_[+2(4.91e-05)]_74 chr2L:18448649-18448769 2.75e-02 75_[+2(3.38e-05)]_37 chrX:18410046-18410166 2.79e-03 70_[+1(1.74e-05)]_42 chr2R:9881937-9882057 8.60e-03 8_[+2(1.89e-05)]_104 chr3R:21632270-21632390 1.82e-02 68_[+3(4.80e-05)]_44 chrX:21323565-21323685 4.06e-04 92_[+2(1.89e-05)]_20 chr2L:6960348-6960468 3.45e-03 53_[+1(1.74e-05)]_59 chr3R:14663115-14663235 6.13e-02 51_[+2(1.89e-05)]_61 chr2R:24133260-24133380 1.39e-03 43_[+2(1.89e-05)]_69 chr3L:2635041-2635161 1.39e-02 74_[+1(1.74e-05)]_38 chrX:1341633-1341753 1.45e-05 43_[+2(1.89e-05)]_69 chr3R:14742239-14742359 6.11e-02 56_[+5(4.00e-05)]_56 chrX:17077106-17077226 1.79e-03 5_[+3(1.57e-05)]_7_[+3(4.80e-05)]_1_\ [+2(3.38e-05)]_83 chrX:13222208-13222328 1.04e-05 32_[+2(1.89e-05)]_39_[+1(1.74e-05)]_\ 18_[+1(1.74e-05)]_7 chr2R:14152433-14152553 8.69e-04 35_[+2(1.89e-05)]_77 chrX:2269508-2269628 1.42e-02 36_[+2(1.89e-05)]_76 chrX:2448168-2448288 1.63e-05 79_[+1(1.74e-05)]_33 chr2R:16867264-16867384 4.97e-05 33_[+2(3.38e-05)]_71_[+3(3.56e-05)] chrX:11453737-11453857 1.16e-04 63_[+3(4.80e-05)]_49 chrX:6804029-6804149 3.78e-03 72_[+2(1.89e-05)]_40 chr2R:21250544-21250664 9.52e-03 21_[+3(3.56e-05)]_1_[+2(1.89e-05)]_\ 4_[+3(3.56e-05)]_7_[+3(6.37e-05)]_6_[+3(3.56e-05)]_41 chr2L:8403060-8403180 2.25e-02 28_[+2(1.89e-05)]_84 chrX:19480496-19480616 3.35e-03 84_[+4(1.15e-05)]_28 chr3L:15514899-15515019 5.72e-03 105_[+1(1.74e-05)]_7 chr2L:18948835-18948955 2.12e-01 51_[+2(3.38e-05)]_61 chr3L:17529600-17529720 7.95e-03 37_[+2(3.38e-05)]_5_[+3(4.80e-05)]_\ 62 chr2R:9399887-9400007 8.12e-03 28_[+2(3.38e-05)]_84 chr3R:5632257-5632377 4.37e-02 68_[+2(1.89e-05)]_44 chr2L:8266820-8266940 5.92e-05 35_[+2(1.89e-05)]_77 chr3L:995794-995914 5.59e-02 25_[+2(1.89e-05)]_87 chrX:5081630-5081750 2.86e-02 21_[+2(3.38e-05)]_4_[+2(1.89e-05)]_\ 24_[+2(1.89e-05)]_47 chr3L:1145713-1145833 3.91e-03 4_[+3(4.80e-05)]_1_[+3(4.80e-05)]_1_\ [+2(1.89e-05)]_16_[+2(1.89e-05)]_4_[+2(1.89e-05)]_54 chrX:8661019-8661139 2.10e-03 3_[+1(8.66e-05)]_36_[+1(1.74e-05)]_\ 36_[+1(1.74e-05)]_1_[+4(1.15e-05)]_12 chr3R:10884993-10885113 1.50e-04 44_[+4(8.79e-05)]_23_[+1(1.74e-05)]_\ 37 chrX:6684349-6684469 4.48e-05 59_[+1(1.74e-05)]_4_[+4(1.15e-05)]_\ 41 chr3R:26058194-26058314 2.37e-03 55_[+1(1.74e-05)]_57 chr2R:16240668-16240788 2.67e-02 34_[+1(3.19e-05)]_78 chr3L:1034626-1034746 1.05e-03 37_[+2(1.89e-05)]_75 chr2L:4968867-4968987 4.28e-03 29_[+3(4.80e-05)]_83 chrX:20510143-20510263 1.54e-03 73_[+2(1.89e-05)]_11_[+3(1.57e-05)]_\ 20 chr3R:17805170-17805290 3.82e-02 44_[+3(4.80e-05)]_24_[+3(8.36e-05)]_\ 36 chr2R:6629628-6629748 6.24e-03 38_[+1(1.74e-05)]_74 chr3L:1569767-1569887 9.39e-03 31_[+2(1.89e-05)]_81 chr3R:9679899-9680019 3.60e-06 42_[+3(1.57e-05)]_15_[+1(1.74e-05)]_\ 47 chr2R:19142227-19142347 1.34e-05 47_[+4(1.15e-05)]_65 chr2R:15682670-15682790 2.27e-04 60_[+4(2.56e-05)]_52 chr3R:31580187-31580307 3.06e-02 70_[+2(1.89e-05)]_42 chr2R:13822845-13822965 5.10e-04 29_[+2(1.89e-05)]_13_[+3(4.80e-05)]_\ 3_[+2(1.89e-05)]_51 chr2R:18614944-18615064 2.31e-03 61_[+1(1.74e-05)]_51 chr2R:12150770-12150890 5.09e-02 41_[+2(1.89e-05)]_71 chrX:18865100-18865220 8.40e-04 36_[+1(3.19e-05)]_33_[+1(1.74e-05)]_\ 35 chrX:7944423-7944543 6.56e-05 23_[+3(6.37e-05)]_17_[+1(1.74e-05)]_\ 64 chr2L:18698650-18698770 5.05e-03 72_[+1(1.74e-05)]_40 chrX:9355825-9355945 4.17e-02 57_[+2(1.89e-05)]_55 chr3R:24220999-24221119 1.11e-02 47_[+1(1.74e-05)]_65 chrX:16792355-16792475 1.07e-03 51_[+4(1.15e-05)]_19_[+4(1.15e-05)]_\ 18_[+1(1.74e-05)]_8 chr3R:11237725-11237845 1.49e-02 120 chr2L:19571577-19571697 1.71e-03 38_[+2(1.89e-05)]_42_[+3(3.56e-05)]_\ 24 chr3L:18905361-18905481 3.23e-03 39_[+1(1.74e-05)]_73 chrX:2586086-2586206 3.84e-04 96_[+1(1.74e-05)]_16 chr3R:29138529-29138649 3.09e-02 43_[+2(3.38e-05)]_69 chr2L:16352161-16352281 2.18e-02 37_[+2(1.89e-05)]_75 chrX:18836415-18836535 1.58e-03 48_[+1(1.74e-05)]_1_[+1(1.74e-05)]_\ 55 chr3R:31405702-31405822 1.78e-03 66_[+2(1.89e-05)]_46 chr3L:20497880-20498000 3.16e-03 5_[+1(1.74e-05)]_64_[+4(1.15e-05)]_\ 4_[+4(3.98e-05)]_23 chr3L:5616618-5616738 1.93e-03 50_[+3(4.80e-05)]_4_[+2(1.89e-05)]_\ 4_[+2(6.11e-05)]_12_[+2(1.89e-05)]_18 chr3R:20592616-20592736 1.66e-03 33_[+2(1.89e-05)]_79 chrX:19221126-19221246 1.14e-02 55_[+1(1.74e-05)]_10_[+1(1.74e-05)]_\ 39 chr3L:4542483-4542603 2.56e-02 37_[+2(1.89e-05)]_1_[+2(3.38e-05)]_\ 66 chr3L:5360178-5360298 9.42e-03 50_[+1(3.19e-05)]_62 chr2R:12184250-12184370 4.90e-04 65_[+1(1.74e-05)]_8_[+1(1.74e-05)]_\ 31 chrX:11891956-11892076 4.31e-03 68_[+1(1.74e-05)]_44 chr3L:211348-211468 1.51e-01 73_[+2(3.38e-05)]_39 chr2R:20640913-20641033 4.62e-04 78_[+1(1.74e-05)]_34 chr3R:19642427-19642547 6.07e-02 54_[+2(3.38e-05)]_58 chrX:8176465-8176585 4.58e-04 33_[+4(1.15e-05)]_79 chr3L:22288151-22288271 3.28e-02 15_[+2(3.38e-05)]_97 chr2R:16612095-16612215 5.10e-05 69_[+1(1.74e-05)]_1_[+4(1.15e-05)]_\ 4_[+1(1.74e-05)]_22 chrX:11601385-11601505 1.15e-03 68_[+1(1.74e-05)]_44 chr3L:347779-347899 2.20e-02 80_[+2(3.38e-05)]_32 chr3L:16865729-16865849 9.02e-06 5_[+3(1.57e-05)]_8_[+2(1.89e-05)]_\ 51_[+1(3.19e-05)]_32 chrX:12905491-12905611 1.02e-04 38_[+1(1.74e-05)]_10_[+4(1.15e-05)]_\ 56 chrX:11792842-11792962 1.07e-02 46_[+2(1.89e-05)]_66 chr3L:10516322-10516442 2.22e-04 65_[+1(1.74e-05)]_10_[+1(8.66e-05)]_\ 29 chrX:15328271-15328391 3.49e-03 80_[+1(3.19e-05)]_32 chrX:16599414-16599534 4.88e-02 106_[+1(8.66e-05)]_6 chr3L:652808-652928 7.23e-03 46_[+2(4.91e-05)]_66 chrX:18893597-18893717 1.52e-02 34_[+2(1.89e-05)]_78 chr2L:2226919-2227039 4.00e-05 22_[+5(1.31e-05)]_12_[+1(3.19e-05)]_\ 3_[+4(1.15e-05)]_59 chr2R:16196243-16196363 3.39e-02 39_[+2(3.38e-05)]_73 chr3L:12537245-12537365 1.15e-03 56_[+1(3.19e-05)]_56 chr2R:21161155-21161275 7.63e-03 32_[+1(1.74e-05)]_80 chr3R:29726548-29726668 4.49e-04 46_[+2(1.89e-05)]_9_[+3(3.56e-05)]_\ 49 chr2R:11640338-11640458 5.84e-05 20_[+5(1.31e-05)]_14_[+3(6.37e-05)]_\ 1_[+2(1.89e-05)]_61 chr3R:21360136-21360256 5.15e-02 53_[+2(1.89e-05)]_59 chrX:2010650-2010770 9.80e-03 45_[+2(1.89e-05)]_67 chr3R:10264622-10264742 9.89e-01 120 chr2R:19142441-19142561 8.58e-04 66_[+2(1.89e-05)]_10_[+2(1.89e-05)]_\ 28 chr2L:19134006-19134126 1.60e-03 72_[+4(2.56e-05)]_40 chr2L:6424293-6424413 2.24e-03 55_[+1(1.74e-05)]_1_[+4(8.79e-05)]_\ 48 chr3L:1302376-1302496 4.49e-03 57_[+2(1.89e-05)]_39_[+3(1.57e-05)]_\ 8 chr2L:19158804-19158924 9.11e-05 43_[+3(6.37e-05)]_4_[+2(1.89e-05)]_\ 57 chr2R:11651023-11651143 5.47e-03 53_[+2(3.38e-05)]_59 chr3R:10682764-10682884 4.43e-05 39_[+3(6.37e-05)]_17_[+1(1.74e-05)]_\ 1_[+1(1.74e-05)]_1_[+4(3.98e-05)]_30 chrX:8807440-8807560 6.26e-05 40_[+5(6.41e-05)]_11_[+1(1.74e-05)]_\ 53 chrX:11817419-11817539 1.30e-04 30_[+1(3.19e-05)]_82 chr2L:19498114-19498234 1.35e-03 64_[+2(3.38e-05)]_48 chrX:11390196-11390316 1.18e-03 89_[+1(1.74e-05)]_9_[+1(3.19e-05)]_\ 6 chr3L:19635266-19635386 9.62e-04 45_[+3(1.57e-05)]_1_[+2(1.89e-05)]_\ 1_[+2(3.38e-05)]_49 chr3L:22743295-22743415 1.58e-02 45_[+2(6.11e-05)]_7_[+2(1.89e-05)]_\ 30_[+3(8.36e-05)]_14 chrX:8907543-8907663 2.05e-02 28_[+2(7.64e-05)]_5_[+2(3.38e-05)]_\ 71 chr3R:14736711-14736831 1.03e-01 43_[+2(3.38e-05)]_69 chr3R:30880351-30880471 3.90e-02 36_[+2(3.38e-05)]_14_[+2(3.38e-05)]_\ 1_[+2(4.91e-05)]_45 chr3R:24318967-24319087 4.90e-03 69_[+1(1.74e-05)]_43 chr2R:6631851-6631971 1.21e-04 87_[+2(1.89e-05)]_14_[+5(8.02e-05)]_\ 3 chr3R:16275994-16276114 1.81e-05 49_[+1(1.74e-05)]_63 chr3L:639976-640096 3.12e-03 68_[+4(1.15e-05)]_44 chr2L:3159317-3159437 7.15e-07 48_[+1(1.74e-05)]_44_[+5(8.02e-05)]_\ 12 chr3L:6925986-6926106 3.26e-07 27_[+5(1.31e-05)]_40_[+4(1.15e-05)]_\ 3_[+2(7.64e-05)]_26 chr3R:25983363-25983483 3.55e-04 42_[+3(4.80e-05)]_[+2(6.11e-05)]_6_\ [+5(5.06e-05)]_48 chr3L:20347888-20348008 5.82e-06 34_[+2(1.89e-05)]_17_[+5(6.41e-05)]_\ 53 chrX:16456688-16456808 2.25e-04 39_[+1(1.74e-05)]_73 chrX:5340118-5340238 1.01e-02 74_[+1(1.74e-05)]_38 chr3L:2766181-2766301 5.38e-06 1_[+5(4.00e-05)]_41_[+4(2.56e-05)]_\ 32_[+3(8.36e-05)]_22 chr3R:4428641-4428761 7.94e-05 33_[+5(5.06e-05)]_21_[+4(1.15e-05)]_\ 1_[+4(5.36e-05)]_41 chr3R:9630251-9630371 3.72e-03 43_[+2(1.89e-05)]_4_[+2(1.89e-05)]_\ 57 chr3R:5464071-5464191 2.64e-04 58_[+5(1.31e-05)]_9_[+2(1.89e-05)]_\ 37 chrX:1874015-1874135 5.03e-03 59_[+4(2.56e-05)]_23_[+1(1.74e-05)]_\ 22 chrX:21338176-21338296 2.94e-05 57_[+2(3.38e-05)]_39_[+4(1.15e-05)]_\ 8 chr3L:5365645-5365765 6.12e-03 72_[+1(1.74e-05)]_40 chr3R:27111925-27112045 6.39e-03 37_[+2(3.38e-05)]_75 chrX:8121068-8121188 1.63e-02 49_[+2(1.89e-05)]_63 chrX:11793044-11793164 3.04e-02 120 chr3R:13684746-13684866 1.25e-02 38_[+2(1.89e-05)]_74 chrX:6700266-6700386 1.14e-02 41_[+1(3.19e-05)]_71 chr3L:1569985-1570105 8.27e-05 85_[+4(5.36e-05)]_10_[+2(1.89e-05)]_\ 9 chr3R:20027965-20028085 2.26e-02 44_[+2(3.38e-05)]_68 chr2R:17723288-17723408 1.73e-04 41_[+1(1.74e-05)]_71 chr2R:20278834-20278954 1.02e-02 56_[+2(1.89e-05)]_56 chrX:10815108-10815228 3.39e-02 18_[+2(1.89e-05)]_94 chr3L:539601-539721 3.70e-04 72_[+4(2.56e-05)]_40 chrX:6268000-6268120 4.42e-02 120 chrX:1893615-1893735 2.48e-04 45_[+1(1.74e-05)]_67 chrX:9686996-9687116 1.33e-02 80_[+2(3.38e-05)]_32 chrX:13783998-13784118 1.76e-03 62_[+4(1.15e-05)]_50 chr2L:18689646-18689766 4.59e-03 72_[+1(1.74e-05)]_40 chrX:4936935-4937055 3.40e-03 26_[+3(3.56e-05)]_14_[+2(1.89e-05)]_\ 64 chrX:6352598-6352718 6.80e-03 8_[+3(8.36e-05)]_79_[+2(1.89e-05)]_\ 17 chrX:13616122-13616242 1.43e-03 35_[+2(7.64e-05)]_35_[+5(1.31e-05)]_\ 2_[+5(4.00e-05)]_24 chr2L:21033480-21033600 3.27e-06 35_[+3(8.36e-05)]_33_[+4(1.15e-05)]_\ 36 chrX:6875939-6876059 1.51e-03 89_[+1(1.74e-05)]_23 chr3R:9418562-9418682 2.88e-03 70_[+2(1.89e-05)]_42 chr3L:16419220-16419340 5.33e-04 78_[+1(3.19e-05)]_34 chr2L:15256508-15256628 1.52e-03 72_[+1(1.74e-05)]_40 chr3L:8545646-8545766 1.91e-03 49_[+1(1.74e-05)]_1_[+1(1.74e-05)]_\ 54 chr2R:12437743-12437863 5.45e-04 78_[+1(1.74e-05)]_34 chr3L:8421339-8421459 6.59e-02 47_[+2(1.89e-05)]_65 chr3L:7156353-7156473 9.99e-07 9_[+5(1.31e-05)]_44_[+1(1.74e-05)]_\ 51 chr3R:27922103-27922223 4.53e-03 35_[+1(1.74e-05)]_77 chr2R:25010958-25011078 7.44e-03 58_[+2(3.38e-05)]_54 chrX:17739052-17739172 6.62e-05 54_[+1(1.74e-05)]_1_[+4(1.15e-05)]_\ 1_[+4(1.15e-05)]_1_[+4(1.15e-05)]_6_[+5(4.00e-05)]_17 chrX:8518466-8518586 1.39e-04 65_[+1(1.74e-05)]_47 chr3L:3545147-3545267 1.14e-02 74_[+2(1.89e-05)]_38 chrX:8058051-8058171 4.63e-03 40_[+4(2.56e-05)]_9_[+1(1.74e-05)]_\ 55 chr3R:29592058-29592178 5.24e-05 26_[+5(1.31e-05)]_24_[+4(5.36e-05)]_\ 8_[+1(1.74e-05)]_38 chr2R:17270049-17270169 9.56e-03 19_[+3(3.56e-05)]_15_[+2(1.89e-05)]_\ 70 chrX:19637506-19637626 1.54e-03 74_[+1(1.74e-05)]_38 chr2L:1164404-1164524 3.63e-03 54_[+1(1.74e-05)]_58 chrX:5690255-5690375 1.17e-05 71_[+4(2.56e-05)]_41 chr3R:9236358-9236478 1.13e-04 14_[+5(1.31e-05)]_51_[+4(2.56e-05)]_\ 39 chr2R:9145189-9145309 3.06e-05 59_[+1(1.74e-05)]_14_[+3(1.57e-05)]_\ 31 chrX:17122807-17122927 1.80e-04 82_[+1(1.74e-05)]_30 chr3R:17680337-17680457 5.26e-03 54_[+4(1.15e-05)]_58 chr2L:12038467-12038587 3.44e-03 88_[+1(1.74e-05)]_24 chrX:2292850-2292970 1.05e-02 44_[+3(4.80e-05)]_16_[+2(1.89e-05)]_\ 44 chrX:6997385-6997505 1.65e-03 68_[+1(1.74e-05)]_44 chr3R:20057692-20057812 1.54e-04 74_[+1(1.74e-05)]_38 chr3L:4252265-4252385 2.19e-03 64_[+1(1.74e-05)]_48 chr3R:6392626-6392746 9.19e-04 63_[+1(1.74e-05)]_49 chr3L:882980-883100 1.23e-03 40_[+2(1.89e-05)]_41_[+5(4.00e-05)]_\ 23 chr3R:16071812-16071932 1.39e-01 66_[+2(3.38e-05)]_46 chr3L:4193882-4194002 5.19e-04 77_[+1(1.74e-05)]_35 chr3L:18819699-18819819 1.07e-02 58_[+3(6.37e-05)]_1_[+2(1.89e-05)]_\ 45 chrX:17423612-17423732 1.95e-01 120 chrX:19479858-19479978 2.72e-03 19_[+3(3.56e-05)]_12_[+2(1.89e-05)]_\ 73 chrX:14825558-14825678 2.15e-06 27_[+4(3.98e-05)]_15_[+2(1.89e-05)]_\ 62 chr2L:11066538-11066658 1.30e-03 29_[+2(1.89e-05)]_7_[+3(1.57e-05)]_\ 68 chr3L:1568277-1568397 1.75e-05 [+3(6.37e-05)]_34_[+4(2.56e-05)]_70 chr3R:10134122-10134242 5.26e-02 41_[+2(6.11e-05)]_71 chr2L:6561614-6561734 1.65e-03 30_[+1(3.19e-05)]_82 chr2L:4198001-4198121 1.05e-02 44_[+2(1.89e-05)]_68 chrX:9609174-9609294 2.90e-02 57_[+1(3.19e-05)]_17_[+1(3.19e-05)]_\ 30 chrX:19261814-19261934 1.29e-01 32_[+2(3.38e-05)]_80 chr2L:19158027-19158147 1.80e-03 36_[+2(1.89e-05)]_76 chr3L:10886036-10886156 3.33e-03 69_[+4(2.56e-05)]_43 chr3R:29087049-29087169 5.75e-02 52_[+2(1.89e-05)]_60 chrX:1966484-1966604 5.18e-05 72_[+1(1.74e-05)]_3_[+5(1.31e-05)]_\ 29 chr2L:5300485-5300605 3.24e-04 65_[+1(3.19e-05)]_47 chr3L:15512081-15512201 1.26e-03 47_[+3(1.57e-05)]_13_[+2(1.89e-05)]_\ 1_[+2(1.89e-05)]_35 chr3R:17714498-17714618 1.76e-02 23_[+2(1.89e-05)]_89 chrX:13625160-13625280 1.15e-04 6_[+3(3.56e-05)]_29_[+1(1.74e-05)]_\ 22_[+1(1.74e-05)]_39 chr3R:21097298-21097418 1.11e-04 27_[+3(3.56e-05)]_29_[+3(4.80e-05)]_\ 19_[+5(1.31e-05)]_21 chrX:4104167-4104287 1.67e-01 120 chr3R:21156945-21157065 1.03e-04 56_[+5(4.00e-05)]_8_[+3(4.80e-05)]_\ 3_[+2(1.89e-05)]_29 chr2R:10597057-10597177 4.54e-02 9_[+2(1.89e-05)]_57_[+2(3.38e-05)]_\ 38 chr2L:19034620-19034740 1.24e-03 49_[+1(1.74e-05)]_63 chr3R:15291373-15291493 5.26e-03 51_[+1(1.74e-05)]_61 chr3R:5612721-5612841 1.51e-02 70_[+2(4.91e-05)]_42 chrX:8676620-8676740 1.14e-04 34_[+5(1.31e-05)]_13_[+1(1.74e-05)]_\ 1_[+1(1.74e-05)]_48 chr2R:11634862-11634982 1.55e-03 59_[+2(1.89e-05)]_53 chrX:840478-840598 1.13e-02 51_[+3(4.80e-05)]_40_[+2(1.89e-05)]_\ 13 chrX:18843782-18843902 1.40e-03 87_[+1(1.74e-05)]_25 chr3L:4627194-4627314 3.56e-03 38_[+2(3.38e-05)]_11_[+3(3.56e-05)]_\ 55 chr2R:11613202-11613322 1.29e-03 44_[+1(1.74e-05)]_7_[+4(1.15e-05)]_\ 53 chr2L:4187776-4187896 6.71e-03 77_[+1(1.74e-05)]_35 chr3R:25662071-25662191 7.11e-05 33_[+3(3.56e-05)]_18_[+1(1.74e-05)]_\ 53 chr3L:16377793-16377913 6.95e-04 42_[+2(1.89e-05)]_27_[+5(4.00e-05)]_\ 17_[+5(5.06e-05)]_10 chr2L:19493564-19493684 2.12e-03 29_[+1(1.74e-05)]_72_[+4(3.98e-05)]_\ 3 chrX:5518465-5518585 4.05e-03 74_[+2(4.91e-05)]_3_[+2(1.89e-05)]_\ 27 chrX:7710000-7710120 1.56e-04 10_[+3(3.56e-05)]_31_[+2(1.89e-05)]_\ 63 chrX:4203647-4203767 5.98e-03 47_[+1(3.19e-05)]_65 chr3R:31771779-31771899 2.61e-02 40_[+2(1.89e-05)]_72 chr2L:16311097-16311217 1.12e-02 85_[+1(1.74e-05)]_27 chr2L:4973949-4974069 2.28e-03 63_[+1(3.19e-05)]_49 chr3L:8451035-8451155 1.07e-03 52_[+2(1.89e-05)]_1_[+2(1.89e-05)]_\ 16_[+3(1.57e-05)]_27 chr2L:21846839-21846959 5.44e-04 16_[+3(3.56e-05)]_18_[+2(1.89e-05)]_\ 70 chr2R:6214047-6214167 2.04e-02 52_[+2(1.89e-05)]_60 chr3R:31722907-31723027 3.01e-03 66_[+1(1.74e-05)]_46 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************