******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17359.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:17871542-17871662 1.0000 120 chrX:19190076-19190196 1.0000 120 chrX:2225147-2225267 1.0000 120 chr2L:7223137-7223257 1.0000 120 chr4:610565-610685 1.0000 120 chr3R:11230543-11230663 1.0000 120 chr2L:20065692-20065812 1.0000 120 chrX:17907640-17907760 1.0000 120 chr3R:28544863-28544983 1.0000 120 chr3R:9144479-9144599 1.0000 120 chr3R:30005467-30005587 1.0000 120 chr3R:8707314-8707434 1.0000 120 chrX:18517526-18517646 1.0000 120 chr3L:12119968-12120088 1.0000 120 chr2R:17476146-17476266 1.0000 120 chr2L:5542360-5542480 1.0000 120 chrX:5086361-5086481 1.0000 120 chrX:10815094-10815214 1.0000 120 chr3L:4534071-4534191 1.0000 120 chr2R:12587587-12587707 1.0000 120 chr3L:9364227-9364347 1.0000 120 chrX:15320671-15320791 1.0000 120 chr3L:16429596-16429716 1.0000 120 chr3L:7979538-7979658 1.0000 120 chr2L:12493721-12493841 1.0000 120 chr2R:21522178-21522298 1.0000 120 chr3R:11412437-11412557 1.0000 120 chrX:3349706-3349826 1.0000 120 chr3R:28545080-28545200 1.0000 120 chr2R:9092999-9093119 1.0000 120 chrX:8206040-8206160 1.0000 120 chr3R:8964099-8964219 1.0000 120 chr3L:16697219-16697339 1.0000 120 chr3R:22220932-22221052 1.0000 120 chrX:9608782-9608902 1.0000 120 chrX:19308087-19308207 1.0000 120 chr2L:16716918-16717038 1.0000 120 chr3R:8920225-8920345 1.0000 120 chr3L:705252-705372 1.0000 120 chr3L:2485855-2485975 1.0000 120 chrX:15860541-15860661 1.0000 120 chr3R:26026739-26026859 1.0000 120 chr2R:6749130-6749250 1.0000 120 chr2L:12530059-12530179 1.0000 120 chr3R:19182991-19183111 1.0000 120 chr3L:19650747-19650867 1.0000 120 chr2L:1916563-1916683 1.0000 120 chr3R:14436549-14436669 1.0000 120 chr2R:17533762-17533882 1.0000 120 chr2R:18994174-18994294 1.0000 120 chr2R:18710737-18710857 1.0000 120 chr2R:9061954-9062074 1.0000 120 chr3R:16829883-16830003 1.0000 120 chrX:15760553-15760673 1.0000 120 chr2L:7851756-7851876 1.0000 120 chr3R:21837199-21837319 1.0000 120 chrX:2624770-2624890 1.0000 120 chr2L:5338756-5338876 1.0000 120 chr2R:7139398-7139518 1.0000 120 chr3L:3050323-3050443 1.0000 120 chrX:3096468-3096588 1.0000 120 chrX:21334642-21334762 1.0000 120 chr3R:28904337-28904457 1.0000 120 chr2L:6797533-6797653 1.0000 120 chr2R:14456431-14456551 1.0000 120 chr3R:29005020-29005140 1.0000 120 chrX:7550857-7550977 1.0000 120 chr3R:15117845-15117965 1.0000 120 chrX:17174183-17174303 1.0000 120 chr3L:15597144-15597264 1.0000 120 chr3L:815352-815472 1.0000 120 chr2R:21514487-21514607 1.0000 120 chrX:11848727-11848847 1.0000 120 chr3R:15425780-15425900 1.0000 120 chrX:11888302-11888422 1.0000 120 chrX:13764527-13764647 1.0000 120 chr3R:28118252-28118372 1.0000 120 chr3L:7811051-7811171 1.0000 120 chrX:17501678-17501798 1.0000 120 chrX:8837320-8837440 1.0000 120 chr3L:517382-517502 1.0000 120 chr3L:4720632-4720752 1.0000 120 chr3R:14002164-14002284 1.0000 120 chr3L:4286880-4287000 1.0000 120 chr3L:775096-775216 1.0000 120 chr2R:13531996-13532116 1.0000 120 chr2R:13507397-13507517 1.0000 120 chr3L:11214537-11214657 1.0000 120 chr2L:7492068-7492188 1.0000 120 chr3R:22719704-22719824 1.0000 120 chr3L:18892175-18892295 1.0000 120 chr3R:11872842-11872962 1.0000 120 chr2R:17436391-17436511 1.0000 120 chr2R:19924035-19924155 1.0000 120 chr2R:19874627-19874747 1.0000 120 chr3R:16769544-16769664 1.0000 120 chrX:20506079-20506199 1.0000 120 chr3R:18785973-18786093 1.0000 120 chr3L:6807647-6807767 1.0000 120 chr2L:18563406-18563526 1.0000 120 chr3L:13994550-13994670 1.0000 120 chr3L:7361382-7361502 1.0000 120 chr2R:18141300-18141420 1.0000 120 chr3L:8445113-8445233 1.0000 120 chr3R:19014926-19015046 1.0000 120 chr3L:2845337-2845457 1.0000 120 chr3R:6007887-6008007 1.0000 120 chr3L:1868944-1869064 1.0000 120 chr3R:21420059-21420179 1.0000 120 chr3L:16486587-16486707 1.0000 120 chr3R:9083529-9083649 1.0000 120 chr3R:7591345-7591465 1.0000 120 chrX:2742267-2742387 1.0000 120 chr3L:8751382-8751502 1.0000 120 chr3R:26900124-26900244 1.0000 120 chrX:4918363-4918483 1.0000 120 chr4:407006-407126 1.0000 120 chr3R:29978768-29978888 1.0000 120 chr3L:917360-917480 1.0000 120 chrX:3019728-3019848 1.0000 120 chr3L:8925816-8925936 1.0000 120 chr3R:23181098-23181218 1.0000 120 chrX:17293477-17293597 1.0000 120 chrX:6067646-6067766 1.0000 120 chrX:5989495-5989615 1.0000 120 chr3R:26105990-26106110 1.0000 120 chr2R:23739501-23739621 1.0000 120 chr3L:5926079-5926199 1.0000 120 chr2R:14986959-14987079 1.0000 120 chr2R:19860409-19860529 1.0000 120 chr3L:8029473-8029593 1.0000 120 chr2R:22387706-22387826 1.0000 120 chrX:3357853-3357973 1.0000 120 chrX:15944831-15944951 1.0000 120 chr3R:26333420-26333540 1.0000 120 chr3R:9344978-9345098 1.0000 120 chr2R:6220007-6220127 1.0000 120 chr3R:14095565-14095685 1.0000 120 chrX:13645202-13645322 1.0000 120 chr2L:3100950-3101070 1.0000 120 chr2R:12727659-12727779 1.0000 120 chrX:12937984-12938104 1.0000 120 chr3R:26444242-26444362 1.0000 120 chr3L:6482987-6483107 1.0000 120 chr3L:7634935-7635055 1.0000 120 chr3R:14659582-14659702 1.0000 120 chr3L:10206322-10206442 1.0000 120 chrX:10573658-10573778 1.0000 120 chr3R:13549712-13549832 1.0000 120 chr2R:12547607-12547727 1.0000 120 chrX:2166248-2166368 1.0000 120 chrX:13112297-13112417 1.0000 120 chr3R:24206863-24206983 1.0000 120 chr3L:19338435-19338555 1.0000 120 chr3R:6352091-6352211 1.0000 120 chr3R:13892992-13893112 1.0000 120 chr3R:8863158-8863278 1.0000 120 chr2L:7926485-7926605 1.0000 120 chr3L:15977725-15977845 1.0000 120 chr3R:23872883-23873003 1.0000 120 chr3R:23969601-23969721 1.0000 120 chr2L:14534028-14534148 1.0000 120 chr3L:3382005-3382125 1.0000 120 chr3R:17056947-17057067 1.0000 120 chrX:13226635-13226755 1.0000 120 chr2L:4838615-4838735 1.0000 120 chr3L:8411747-8411867 1.0000 120 chrX:9120969-9121089 1.0000 120 chrX:14634833-14634953 1.0000 120 chr3R:8354547-8354667 1.0000 120 chr2R:20195206-20195326 1.0000 120 chr3L:629910-630030 1.0000 120 chr2R:16270671-16270791 1.0000 120 chrX:12454511-12454631 1.0000 120 chr3L:2159034-2159154 1.0000 120 chr2R:6464950-6465070 1.0000 120 chrX:13109836-13109956 1.0000 120 chr2L:4133204-4133324 1.0000 120 chr2L:10986327-10986447 1.0000 120 chr3R:23922839-23922959 1.0000 120 chr3R:11663640-11663760 1.0000 120 chr3L:797058-797178 1.0000 120 chr2R:15848603-15848723 1.0000 120 chr2L:16544613-16544733 1.0000 120 chr2L:19059065-19059185 1.0000 120 chr2L:8610965-8611085 1.0000 120 chr2R:17869031-17869151 1.0000 120 chr3R:8954995-8955115 1.0000 120 chr2L:19930235-19930355 1.0000 120 chrX:3358068-3358188 1.0000 120 chr3R:8694244-8694364 1.0000 120 chr3L:19216500-19216620 1.0000 120 chr3R:26280494-26280614 1.0000 120 chr3L:19073969-19074089 1.0000 120 chr3R:10648910-10649030 1.0000 120 chr2L:9493433-9493553 1.0000 120 chr3R:23387054-23387174 1.0000 120 chr2L:3003498-3003618 1.0000 120 chr3L:10428213-10428333 1.0000 120 chr3R:15983707-15983827 1.0000 120 chr2R:23578574-23578694 1.0000 120 chr2L:7635280-7635400 1.0000 120 chr2R:8734639-8734759 1.0000 120 chrX:15886758-15886878 1.0000 120 chr2R:21476577-21476697 1.0000 120 chr2R:22657077-22657197 1.0000 120 chr3R:16837941-16838061 1.0000 120 chr3L:6157702-6157822 1.0000 120 chr3R:26436678-26436798 1.0000 120 chrX:14679316-14679436 1.0000 120 chr2R:18421231-18421351 1.0000 120 chr2R:14490754-14490874 1.0000 120 chr3L:3786942-3787062 1.0000 120 chr2L:3851417-3851537 1.0000 120 chr2R:12593420-12593540 1.0000 120 chr2L:22144285-22144405 1.0000 120 chr2L:2374032-2374152 1.0000 120 chr3L:9461718-9461838 1.0000 120 chr2R:12274355-12274475 1.0000 120 chr2R:19127978-19128098 1.0000 120 chr3R:29690557-29690677 1.0000 120 chrX:9664574-9664694 1.0000 120 chr2L:8982760-8982880 1.0000 120 chrX:11660604-11660724 1.0000 120 chr3R:6818717-6818837 1.0000 120 chr2R:18398324-18398444 1.0000 120 chr3R:11852081-11852201 1.0000 120 chr2L:18328883-18329003 1.0000 120 chr2L:9206525-9206645 1.0000 120 chrX:9652130-9652250 1.0000 120 chrX:2947758-2947878 1.0000 120 chr3L:3515648-3515768 1.0000 120 chr2R:11738652-11738772 1.0000 120 chrX:22837505-22837625 1.0000 120 chr3R:14729367-14729487 1.0000 120 chr2R:19146135-19146255 1.0000 120 chrX:9137282-9137402 1.0000 120 chr2L:18982265-18982385 1.0000 120 chr3R:13644805-13644925 1.0000 120 chr2R:22540012-22540132 1.0000 120 chr2R:21018415-21018535 1.0000 120 chr3L:18782211-18782331 1.0000 120 chr2L:20811359-20811479 1.0000 120 chr3R:8960512-8960632 1.0000 120 chr3R:13713620-13713740 1.0000 120 chr2L:10760752-10760872 1.0000 120 chr3R:21854081-21854201 1.0000 120 chr2R:11435208-11435328 1.0000 120 chrX:10600670-10600790 1.0000 120 chr3L:1216624-1216744 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG17359/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17359.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.338 C 0.158 G 0.157 T 0.346 Background letter frequencies (from file dataset with add-one prior applied): A 0.338 C 0.158 G 0.157 T 0.346 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCRSYRSM MEME-1 width = 8 sites = 42 llr = 356 E-value = 1.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCRSYRSM MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::4::3:4 pos.-specific C 2a165:66 probability G 8:54274: matrix T ::::3::: bits 2.7 2.4 * 2.1 * 1.9 ** Relative 1.6 ** * * Entropy 1.3 ** * *** (12.2 bits) 1.1 ** * *** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGCCGCC consensus C AGTAGA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSYRSM MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3515648-3515768 78 3.81e-07 TTTCTCAGCT GCGCCGCC TGATTTTTTG chrX:19308087-19308207 82 3.81e-07 ATTTGTTGTT GCGCCGCC TTGCCGCGTT chr3R:23922839-23922959 77 2.71e-06 TGCGTTTGCG GCGGCGGC GAGTGCGCAC chrX:13112297-13112417 54 2.71e-06 GCGGCAAAAT GCGGCGGC AAGAGTGGCG chr2R:12274355-12274475 81 7.52e-06 TAAGGTCAGC GCGCCACC TGGCGACGGC chr3L:629910-630030 6 7.52e-06 AATGT GCAGCGCC CTTGTGTGCA chr2L:6797533-6797653 41 7.52e-06 CAACTTTTTA GCGCCACC TGGCTGAATA chrX:9608782-9608902 85 7.52e-06 TACACGACCA GCGCTGCC AGATGGGCAT chr3R:8694244-8694364 90 1.31e-05 TGGTGTGCTT GCGGCACC ACCCCTAACA chr2R:17476146-17476266 16 1.31e-05 TAGGGGATGT GCCGCGCC AAGGAAATTA chr2L:18563406-18563526 8 1.80e-05 TCCCTTT GCGCTGGC ATTCGCATTC chr3L:16429596-16429716 5 2.00e-05 TTTT GCCCGGCC AAATGACGTG chr3L:7979538-7979658 106 2.12e-05 cgaaaaaCTG CCACCGCC GCTGCTC chr3R:8707314-8707434 20 2.12e-05 CGCTCACCTC CCACCGCC CAACGCCCAC chrX:22837505-22837625 2 2.49e-05 G GCACCGCA ATATAAAAAT chrX:18517526-18517646 101 2.49e-05 GCGCCCTCTG GCGGCGGA CGCGTCAGCT chrX:17907640-17907760 22 2.49e-05 CATTGCAGCT GCACCGCA ATCTAAGGCC chr3R:30005467-30005587 96 3.13e-05 TTTCCGGCCG GCGGGGCA GGGACCGGTT chrX:2624770-2624890 27 3.74e-05 CACTTCGCAG CCAGCGCC ACATTTGCTA chr2R:17871542-17871662 87 3.74e-05 ATTTTCGATG CCGCCACC GTTTGGTTTT chr2L:20065692-20065812 45 4.55e-05 AGAGATAATC GCGCGAGC TGGATACTCT chrX:17174183-17174303 20 5.33e-05 CCATATGGAG GCCCCACC TCCAACACAT chr3R:9144479-9144599 66 6.52e-05 CTGAGAGAAC GCGGGGGA GTTTCCCCCT chr2R:17436391-17436511 4 7.32e-05 CGA GCGGGAGC AGGCGAGGTG chrX:5086361-5086481 85 7.32e-05 ATCCAACAAA GCGGTGCA AAATAATAAG chr2L:1916563-1916683 42 8.84e-05 TGGCAGTTGA GCGCTGGA TGGCATTTGG chr2R:14986959-14987079 81 9.97e-05 GAAATGTTTA GCAGCAGC GGACACGATA chr2R:15848603-15848723 78 1.14e-04 agcggaaaaG CCACCACC AGAGCGTGGA chr3R:13713620-13713740 4 1.29e-04 AAT GCACTGCA AGAAAATGCA chr2L:18982265-18982385 38 1.29e-04 CAATCTAATA GCACTGCA ATGTGGTGTG chr3L:775096-775216 45 1.29e-04 AACATAACAA GCACTGCA TAACACATGC chrX:15760553-15760673 65 1.29e-04 TATTCTAAAT GCACCACA ATATATATAT chr3R:17056947-17057067 10 1.49e-04 TGCCTGCCA CCAGGGGC GTAGTCTGGA chr3R:13644805-13644925 7 1.60e-04 CAAAAC GCAGGGGA GCAAACAAGA chr3R:16829883-16830003 82 1.60e-04 ACCGCTTTAC GCGCGAGA AGAGAAGCGA chr2R:9092999-9093119 35 1.60e-04 CGACTATTCA CCCCTGCC ATTCACTGGG chrX:8837320-8837440 70 1.80e-04 AAACTATATT GCAGTGCA TACATATTTA chr2R:22540012-22540132 26 2.07e-04 ACTATTATCT CCCGCGCA CTCTCTAGTA chr2R:6749130-6749250 111 2.07e-04 GACCTGCGCT GGGCGGCC GA chr3R:28545080-28545200 71 2.07e-04 TTTACACATT CCGGGAGC TGTCATCCTA chrX:19190076-19190196 92 2.21e-04 AATGCAATTC GCACTAGC TGGCAGCTTC chrX:15886758-15886878 36 2.49e-04 TATAAGTCTG CCGCTAGC GAGTGCACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSYRSM MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3515648-3515768 3.8e-07 77_[+1]_35 chrX:19308087-19308207 3.8e-07 81_[+1]_31 chr3R:23922839-23922959 2.7e-06 76_[+1]_36 chrX:13112297-13112417 2.7e-06 53_[+1]_59 chr2R:12274355-12274475 7.5e-06 80_[+1]_32 chr3L:629910-630030 7.5e-06 5_[+1]_107 chr2L:6797533-6797653 7.5e-06 40_[+1]_72 chrX:9608782-9608902 7.5e-06 84_[+1]_28 chr3R:8694244-8694364 1.3e-05 89_[+1]_23 chr2R:17476146-17476266 1.3e-05 15_[+1]_97 chr2L:18563406-18563526 1.8e-05 7_[+1]_105 chr3L:16429596-16429716 2e-05 4_[+1]_108 chr3L:7979538-7979658 2.1e-05 105_[+1]_7 chr3R:8707314-8707434 2.1e-05 19_[+1]_93 chrX:22837505-22837625 2.5e-05 1_[+1]_111 chrX:18517526-18517646 2.5e-05 100_[+1]_12 chrX:17907640-17907760 2.5e-05 21_[+1]_91 chr3R:30005467-30005587 3.1e-05 95_[+1]_17 chrX:2624770-2624890 3.7e-05 26_[+1]_86 chr2R:17871542-17871662 3.7e-05 86_[+1]_26 chr2L:20065692-20065812 4.5e-05 44_[+1]_68 chrX:17174183-17174303 5.3e-05 19_[+1]_93 chr3R:9144479-9144599 6.5e-05 65_[+1]_47 chr2R:17436391-17436511 7.3e-05 3_[+1]_109 chrX:5086361-5086481 7.3e-05 84_[+1]_28 chr2L:1916563-1916683 8.8e-05 41_[+1]_71 chr2R:14986959-14987079 0.0001 80_[+1]_32 chr2R:15848603-15848723 0.00011 77_[+1]_35 chr3R:13713620-13713740 0.00013 3_[+1]_109 chr2L:18982265-18982385 0.00013 37_[+1]_75 chr3L:775096-775216 0.00013 44_[+1]_68 chrX:15760553-15760673 0.00013 64_[+1]_48 chr3R:17056947-17057067 0.00015 9_[+1]_103 chr3R:13644805-13644925 0.00016 6_[+1]_106 chr3R:16829883-16830003 0.00016 81_[+1]_31 chr2R:9092999-9093119 0.00016 34_[+1]_78 chrX:8837320-8837440 0.00018 69_[+1]_43 chr2R:22540012-22540132 0.00021 25_[+1]_87 chr2R:6749130-6749250 0.00021 110_[+1]_2 chr3R:28545080-28545200 0.00021 70_[+1]_42 chrX:19190076-19190196 0.00022 91_[+1]_21 chrX:15886758-15886878 0.00025 35_[+1]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSYRSM MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCRSYRSM width=8 seqs=42 chr3L:3515648-3515768 ( 78) GCGCCGCC 1 chrX:19308087-19308207 ( 82) GCGCCGCC 1 chr3R:23922839-23922959 ( 77) GCGGCGGC 1 chrX:13112297-13112417 ( 54) GCGGCGGC 1 chr2R:12274355-12274475 ( 81) GCGCCACC 1 chr3L:629910-630030 ( 6) GCAGCGCC 1 chr2L:6797533-6797653 ( 41) GCGCCACC 1 chrX:9608782-9608902 ( 85) GCGCTGCC 1 chr3R:8694244-8694364 ( 90) GCGGCACC 1 chr2R:17476146-17476266 ( 16) GCCGCGCC 1 chr2L:18563406-18563526 ( 8) GCGCTGGC 1 chr3L:16429596-16429716 ( 5) GCCCGGCC 1 chr3L:7979538-7979658 ( 106) CCACCGCC 1 chr3R:8707314-8707434 ( 20) CCACCGCC 1 chrX:22837505-22837625 ( 2) GCACCGCA 1 chrX:18517526-18517646 ( 101) GCGGCGGA 1 chrX:17907640-17907760 ( 22) GCACCGCA 1 chr3R:30005467-30005587 ( 96) GCGGGGCA 1 chrX:2624770-2624890 ( 27) CCAGCGCC 1 chr2R:17871542-17871662 ( 87) CCGCCACC 1 chr2L:20065692-20065812 ( 45) GCGCGAGC 1 chrX:17174183-17174303 ( 20) GCCCCACC 1 chr3R:9144479-9144599 ( 66) GCGGGGGA 1 chr2R:17436391-17436511 ( 4) GCGGGAGC 1 chrX:5086361-5086481 ( 85) GCGGTGCA 1 chr2L:1916563-1916683 ( 42) GCGCTGGA 1 chr2R:14986959-14987079 ( 81) GCAGCAGC 1 chr2R:15848603-15848723 ( 78) CCACCACC 1 chr3R:13713620-13713740 ( 4) GCACTGCA 1 chr2L:18982265-18982385 ( 38) GCACTGCA 1 chr3L:775096-775216 ( 45) GCACTGCA 1 chrX:15760553-15760673 ( 65) GCACCACA 1 chr3R:17056947-17057067 ( 10) CCAGGGGC 1 chr3R:13644805-13644925 ( 7) GCAGGGGA 1 chr3R:16829883-16830003 ( 82) GCGCGAGA 1 chr2R:9092999-9093119 ( 35) CCCCTGCC 1 chrX:8837320-8837440 ( 70) GCAGTGCA 1 chr2R:22540012-22540132 ( 26) CCCGCGCA 1 chr2R:6749130-6749250 ( 111) GGGCGGCC 1 chr3R:28545080-28545200 ( 71) CCGGGAGC 1 chrX:19190076-19190196 ( 92) GCACTAGC 1 chrX:15886758-15886878 ( 36) CCGCTAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSYRSM MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8977 E= 1.1e-003 -1204 59 228 -1204 -1204 263 -272 -1204 17 -41 167 -1204 -1204 191 136 -1204 -1204 166 60 -40 -2 -1204 208 -1204 -1204 202 118 -1204 8 202 -1204 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSYRSM MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 1.1e-003 0.000000 0.238095 0.761905 0.000000 0.000000 0.976190 0.023810 0.000000 0.380952 0.119048 0.500000 0.000000 0.000000 0.595238 0.404762 0.000000 0.000000 0.500000 0.238095 0.261905 0.333333 0.000000 0.666667 0.000000 0.000000 0.642857 0.357143 0.000000 0.357143 0.642857 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRSYRSM MEME-1 regular expression -------------------------------------------------------------------------------- [GC]C[GA][CG][CTG][GA][CG][CA] -------------------------------------------------------------------------------- Time 7.83 secs. ******************************************************************************** ******************************************************************************** MOTIF RGAGGGRG MEME-2 width = 8 sites = 12 llr = 127 E-value = 1.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGAGGGRG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 5:8:::4: pos.-specific C :::::11: probability G 3a3aa95a matrix T 2::::::: bits 2.7 * ** * 2.4 * ** * 2.1 * *** * 1.9 * *** * Relative 1.6 * *** * Entropy 1.3 * *** * (15.3 bits) 1.1 ***** * 0.8 ******* 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AGAGGGGG consensus G G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGGGRG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16829883-16830003 19 7.95e-07 GTCTGTCTAC GGAGGGGG ttttccttta chrX:10815094-10815214 92 7.95e-07 ATAAGGGAAG GGAGGGGG TTTTTTTCTC chr2L:14534028-14534148 44 2.87e-06 TTGTGGGCTG AGAGGGGG GGAATTTCCA chr3R:23872883-23873003 4 2.87e-06 CAT AGAGGGGG ATTACACTGC chrX:3349706-3349826 32 2.87e-06 ttGGGAGGGT GGGGGGGG AGTAACCTGA chr2R:12274355-12274475 4 9.86e-06 agc agagggag aagcaagaag chr2R:14490754-14490874 76 9.86e-06 AAGAAGTGGA AGAGGGAG ATGTAGAGGG chr2R:22657077-22657197 35 9.86e-06 TTTGGGCTGA GGGGGGAG TTAGACAAAC chr4:407006-407126 28 1.70e-05 CATTTCCCAC AGAGGGCG CCTGTAGTGG chr2R:17533762-17533882 39 2.16e-05 ATTAGGTTGC TGAGGGAG TAATAATTAG chr3R:10648910-10649030 27 2.62e-05 TGGGTCAAAA AGAGGCGG GATTTCAGTA chr2L:19059065-19059185 14 2.62e-05 CCATTATTCA TGGGGGAG TACATTTAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGGGRG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16829883-16830003 7.9e-07 18_[+2]_94 chrX:10815094-10815214 7.9e-07 91_[+2]_21 chr2L:14534028-14534148 2.9e-06 43_[+2]_69 chr3R:23872883-23873003 2.9e-06 3_[+2]_109 chrX:3349706-3349826 2.9e-06 31_[+2]_81 chr2R:12274355-12274475 9.9e-06 3_[+2]_109 chr2R:14490754-14490874 9.9e-06 75_[+2]_37 chr2R:22657077-22657197 9.9e-06 34_[+2]_78 chr4:407006-407126 1.7e-05 27_[+2]_85 chr2R:17533762-17533882 2.2e-05 38_[+2]_74 chr3R:10648910-10649030 2.6e-05 26_[+2]_86 chr2L:19059065-19059185 2.6e-05 13_[+2]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGGGRG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGAGGGRG width=8 seqs=12 chr3R:16829883-16830003 ( 19) GGAGGGGG 1 chrX:10815094-10815214 ( 92) GGAGGGGG 1 chr2L:14534028-14534148 ( 44) AGAGGGGG 1 chr3R:23872883-23873003 ( 4) AGAGGGGG 1 chrX:3349706-3349826 ( 32) GGGGGGGG 1 chr2R:12274355-12274475 ( 4) AGAGGGAG 1 chr2R:14490754-14490874 ( 76) AGAGGGAG 1 chr2R:22657077-22657197 ( 35) GGGGGGAG 1 chr4:407006-407126 ( 28) AGAGGGCG 1 chr2R:17533762-17533882 ( 39) TGAGGGAG 1 chr3R:10648910-10649030 ( 27) AGAGGCGG 1 chr2L:19059065-19059185 ( 14) TGGGGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGGGRG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 1.3e+002 56 -1023 108 -105 -1023 -1023 267 -1023 115 -1023 67 -1023 -1023 -1023 267 -1023 -1023 -1023 267 -1023 -1023 -92 254 -1023 30 -92 167 -1023 -1023 -1023 267 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGGGRG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.3e+002 0.500000 0.000000 0.333333 0.166667 0.000000 0.000000 1.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.416667 0.083333 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGAGGGRG MEME-2 regular expression -------------------------------------------------------------------------------- [AG]G[AG]GGG[GA]G -------------------------------------------------------------------------------- Time 14.29 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCGCTC MEME-3 width = 8 sites = 9 llr = 100 E-value = 4.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCGCTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :92a19:9 probability G a:7:9:31 matrix T :11::17: bits 2.7 * * 2.4 * * 2.1 ** *** * 1.9 ** *** * Relative 1.6 ** *** * Entropy 1.3 ****** * (16.0 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGCGCTC consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:30005467-30005587 27 3.79e-07 AATTGTGTAT GCGCGCGC CGGTTGGTGT chr2R:17871542-17871662 9 1.21e-06 caacacac gcgcgctc gcacacgctc chrX:17907640-17907760 42 1.59e-06 CTAAGGCCCA GCCCGCGC TGTGGTCACA chr2R:12587587-12587707 81 2.43e-06 ttttGATTCA GCCCGCTC TATTACGTGC chrX:2624770-2624890 51 4.86e-06 GCTAGCCAAT GCGCGCTG GTCACACTGG chrX:18517526-18517646 91 4.86e-06 GTTCCAGACG GCGCCCTC TGGCGGCGGA chrX:19308087-19308207 6 7.53e-06 ctCCT GCTCGCTC CGCCTCATCT chrX:15860541-15860661 86 9.19e-06 CGCGGTTGCT GCGCGTGC GAATGGGACA chr2R:17436391-17436511 105 1.28e-05 TTGAGTGTGA GTGCGCTC CAAGTCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30005467-30005587 3.8e-07 26_[+3]_86 chr2R:17871542-17871662 1.2e-06 8_[+3]_104 chrX:17907640-17907760 1.6e-06 41_[+3]_71 chr2R:12587587-12587707 2.4e-06 80_[+3]_32 chrX:2624770-2624890 4.9e-06 50_[+3]_62 chrX:18517526-18517646 4.9e-06 90_[+3]_22 chrX:19308087-19308207 7.5e-06 5_[+3]_107 chrX:15860541-15860661 9.2e-06 85_[+3]_27 chr2R:17436391-17436511 1.3e-05 104_[+3]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCGCTC width=8 seqs=9 chr3R:30005467-30005587 ( 27) GCGCGCGC 1 chr2R:17871542-17871662 ( 9) GCGCGCTC 1 chrX:17907640-17907760 ( 42) GCCCGCGC 1 chr2R:12587587-12587707 ( 81) GCCCGCTC 1 chrX:2624770-2624890 ( 51) GCGCGCTG 1 chrX:18517526-18517646 ( 91) GCGCCCTC 1 chrX:19308087-19308207 ( 6) GCTCGCTC 1 chrX:15860541-15860661 ( 86) GCGCGTGC 1 chr2R:17436391-17436511 ( 105) GTGCGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.0203 E= 4.2e+002 -982 -982 267 -982 -982 249 -982 -164 -982 49 208 -164 -982 266 -982 -982 -982 -51 250 -982 -982 249 -982 -164 -982 -982 108 94 -982 249 -50 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.2e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.222222 0.666667 0.111111 0.000000 1.000000 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 0.000000 0.333333 0.666667 0.000000 0.888889 0.111111 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCTC MEME-3 regular expression -------------------------------------------------------------------------------- GC[GC]CGC[TG]C -------------------------------------------------------------------------------- Time 20.72 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCYGCCA MEME-4 width = 8 sites = 5 llr = 63 E-value = 3.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCYGCCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C :8a6:aa: probability G a2::a::: matrix T :::4:::: bits 2.7 * * *** 2.4 * * *** 2.1 * * *** 1.9 *** *** Relative 1.6 *** **** Entropy 1.3 ******** (18.1 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCCGCCA consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCYGCCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:9461718-9461838 26 8.20e-07 GAAATCTCCT GCCCGCCA GGGTTGCCAA chr2R:9092999-9093119 109 8.20e-07 CACAGAAAGT GCCCGCCA ATCC chr3R:17056947-17057067 2 2.62e-06 T GCCTGCCA CCAGGGGCGT chr3R:11230543-11230663 26 2.62e-06 TGGCACGCGG GCCTGCCA ACTTGTCATG chrX:18517526-18517646 40 3.43e-06 GCGTTCAATT GGCCGCCA GTGGCGCTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCYGCCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9461718-9461838 8.2e-07 25_[+4]_87 chr2R:9092999-9093119 8.2e-07 108_[+4]_4 chr3R:17056947-17057067 2.6e-06 1_[+4]_111 chr3R:11230543-11230663 2.6e-06 25_[+4]_87 chrX:18517526-18517646 3.4e-06 39_[+4]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCYGCCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCYGCCA width=8 seqs=5 chr3L:9461718-9461838 ( 26) GCCCGCCA 1 chr2R:9092999-9093119 ( 109) GCCCGCCA 1 chr3R:17056947-17057067 ( 2) GCCTGCCA 1 chr3R:11230543-11230663 ( 26) GCCTGCCA 1 chrX:18517526-18517646 ( 40) GGCCGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCYGCCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 3.4e+003 -897 -897 267 -897 -897 234 35 -897 -897 266 -897 -897 -897 192 -897 21 -897 -897 267 -897 -897 266 -897 -897 -897 266 -897 -897 156 -897 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCYGCCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 3.4e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCYGCCA MEME-4 regular expression -------------------------------------------------------------------------------- G[CG]C[CT]GCCA -------------------------------------------------------------------------------- Time 27.13 secs. ******************************************************************************** ******************************************************************************** MOTIF TCWCASTG MEME-5 width = 8 sites = 17 llr = 166 E-value = 2.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCWCASTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::4:9::: pos.-specific C :a:a15:: probability G 1::::5:a matrix T 9:6:::a: bits 2.7 * * * 2.4 * * * 2.1 * * * 1.9 * * * Relative 1.6 * * *** Entropy 1.3 * * *** (14.1 bits) 1.1 ** ***** 0.8 ** ***** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TCTCAGTG consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCWCASTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:7634935-7635055 99 8.62e-06 TATGTTTTTT TCTCAGTG CAGAACTAGA chr2R:23739501-23739621 74 8.62e-06 GCCTATTTGT TCTCAGTG TAGCTCCAAC chr3R:29978768-29978888 99 8.62e-06 ATGCACTTTT TCTCAGTG CATATCTAGA chr2R:19924035-19924155 112 8.62e-06 ACTTCACTTC TCTCAGTG A chr3R:28118252-28118372 113 8.62e-06 AAAACAATTC TCTCAGTG chrX:10815094-10815214 106 8.62e-06 GGGGTTTTTT TCTCAGTG GAGATGA chr3R:23872883-23873003 56 1.73e-05 TAAAATCAGT TCTCACTG GCCGCTTAAA chr3L:19338435-19338555 101 1.73e-05 AACTTTTAAC TCTCACTG TAACTGACTT chr3L:19216500-19216620 10 2.57e-05 AACGCTGAT TCACAGTG AAAAATAATA chr3L:815352-815472 64 3.42e-05 TCTAAGACTT TCACACTG AATTTACTTA chr3L:3050323-3050443 31 3.42e-05 TTTCAGCCGG TCACACTG GTCGAAAAAA chrX:2624770-2624890 60 3.42e-05 TGCGCGCTGG TCACACTG GCGAAAGTAA chrX:17907640-17907760 55 3.42e-05 CGCGCTGTGG TCACACTG ACAAATAAAA chrX:13764527-13764647 102 4.21e-05 CTCTTACTTT TCTCCGTG TGCATACCCT chr3L:7361382-7361502 89 5.01e-05 TTGCACACAC GCTCACTG ACCAATCGGC chrX:15944831-15944951 73 5.78e-05 ATGTAGATTA GCACAGTG CAGGCGCAGA chr3R:15983707-15983827 83 6.56e-05 ACACCTAATT TCACCCTG ACCAATTGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCWCASTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7634935-7635055 8.6e-06 98_[+5]_14 chr2R:23739501-23739621 8.6e-06 73_[+5]_39 chr3R:29978768-29978888 8.6e-06 98_[+5]_14 chr2R:19924035-19924155 8.6e-06 111_[+5]_1 chr3R:28118252-28118372 8.6e-06 112_[+5] chrX:10815094-10815214 8.6e-06 105_[+5]_7 chr3R:23872883-23873003 1.7e-05 55_[+5]_57 chr3L:19338435-19338555 1.7e-05 100_[+5]_12 chr3L:19216500-19216620 2.6e-05 9_[+5]_103 chr3L:815352-815472 3.4e-05 63_[+5]_49 chr3L:3050323-3050443 3.4e-05 30_[+5]_82 chrX:2624770-2624890 3.4e-05 59_[+5]_53 chrX:17907640-17907760 3.4e-05 54_[+5]_58 chrX:13764527-13764647 4.2e-05 101_[+5]_11 chr3L:7361382-7361502 5e-05 88_[+5]_24 chrX:15944831-15944951 5.8e-05 72_[+5]_40 chr3R:15983707-15983827 6.6e-05 82_[+5]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCWCASTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCWCASTG width=8 seqs=17 chr3L:7634935-7635055 ( 99) TCTCAGTG 1 chr2R:23739501-23739621 ( 74) TCTCAGTG 1 chr3R:29978768-29978888 ( 99) TCTCAGTG 1 chr2R:19924035-19924155 ( 112) TCTCAGTG 1 chr3R:28118252-28118372 ( 113) TCTCAGTG 1 chrX:10815094-10815214 ( 106) TCTCAGTG 1 chr3R:23872883-23873003 ( 56) TCTCACTG 1 chr3L:19338435-19338555 ( 101) TCTCACTG 1 chr3L:19216500-19216620 ( 10) TCACAGTG 1 chr3L:815352-815472 ( 64) TCACACTG 1 chr3L:3050323-3050443 ( 31) TCACACTG 1 chrX:2624770-2624890 ( 60) TCACACTG 1 chrX:17907640-17907760 ( 55) TCACACTG 1 chrX:13764527-13764647 ( 102) TCTCCGTG 1 chr3L:7361382-7361502 ( 89) GCTCACTG 1 chrX:15944831-15944951 ( 73) GCACAGTG 1 chr3R:15983707-15983827 ( 83) TCACCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCWCASTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 2.7e+003 -1073 -1073 -42 135 -1073 266 -1073 -1073 28 -1073 -1073 76 -1073 266 -1073 -1073 138 -43 -1073 -1073 -1073 157 175 -1073 -1073 -1073 -1073 153 -1073 -1073 267 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCWCASTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 2.7e+003 0.000000 0.000000 0.117647 0.882353 0.000000 1.000000 0.000000 0.000000 0.411765 0.000000 0.000000 0.588235 0.000000 1.000000 0.000000 0.000000 0.882353 0.117647 0.000000 0.000000 0.000000 0.470588 0.529412 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCWCASTG MEME-5 regular expression -------------------------------------------------------------------------------- TC[TA]CA[GC]TG -------------------------------------------------------------------------------- Time 33.52 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17871542-17871662 1.60e-06 8_[+3(1.21e-06)]_70_[+1(3.74e-05)]_\ 26 chrX:19190076-19190196 3.11e-02 120 chrX:2225147-2225267 5.63e-02 120 chr2L:7223137-7223257 9.99e-01 120 chr4:610565-610685 9.09e-01 120 chr3R:11230543-11230663 4.64e-04 25_[+4(2.62e-06)]_87 chr2L:20065692-20065812 1.47e-02 44_[+1(4.55e-05)]_68 chrX:17907640-17907760 4.64e-07 21_[+1(2.49e-05)]_12_[+3(1.59e-06)]_\ 5_[+5(3.42e-05)]_58 chr3R:28544863-28544983 9.89e-01 120 chr3R:9144479-9144599 2.98e-04 65_[+1(6.52e-05)]_47 chr3R:30005467-30005587 3.12e-06 26_[+3(3.79e-07)]_61_[+1(3.13e-05)]_\ 17 chr3R:8707314-8707434 1.11e-03 19_[+1(2.12e-05)]_93 chrX:18517526-18517646 3.37e-08 39_[+4(3.43e-06)]_43_[+3(4.86e-06)]_\ 2_[+1(2.49e-05)]_12 chr3L:12119968-12120088 2.03e-01 120 chr2R:17476146-17476266 1.04e-03 15_[+1(1.31e-05)]_66_[+1(3.13e-05)]_\ 3_[+2(9.61e-05)]_12 chr2L:5542360-5542480 7.10e-01 120 chrX:5086361-5086481 1.24e-01 84_[+1(7.32e-05)]_28 chrX:10815094-10815214 6.65e-05 91_[+2(7.95e-07)]_6_[+5(8.62e-06)]_\ 7 chr3L:4534071-4534191 2.54e-01 120 chr2R:12587587-12587707 8.27e-04 80_[+3(2.43e-06)]_32 chr3L:9364227-9364347 1.44e-01 45_[+4(3.48e-05)]_67 chrX:15320671-15320791 2.91e-01 120 chr3L:16429596-16429716 2.40e-03 4_[+1(2.00e-05)]_79_[+1(9.97e-05)]_\ 21 chr3L:7979538-7979658 9.84e-04 6_[+1(8.03e-05)]_91_[+1(2.12e-05)]_\ 7 chr2L:12493721-12493841 1.82e-01 120 chr2R:21522178-21522298 4.15e-02 48_[+4(9.82e-05)]_64 chr3R:11412437-11412557 9.77e-01 120 chrX:3349706-3349826 5.76e-03 31_[+2(2.87e-06)]_81 chr3R:28545080-28545200 6.68e-02 120 chr2R:9092999-9093119 9.75e-08 12_[+2(3.59e-05)]_15_[+4(9.82e-05)]_\ 65_[+4(8.20e-07)]_4 chrX:8206040-8206160 9.28e-01 120 chr3R:8964099-8964219 9.67e-02 120 chr3L:16697219-16697339 8.24e-01 120 chr3R:22220932-22221052 4.51e-01 120 chrX:9608782-9608902 1.37e-03 48_[+1(4.55e-05)]_28_[+1(7.52e-06)]_\ 28 chrX:19308087-19308207 1.31e-05 5_[+3(7.53e-06)]_68_[+1(3.81e-07)]_\ 31 chr2L:16716918-16717038 5.99e-01 120 chr3R:8920225-8920345 1.75e-01 120 chr3L:705252-705372 9.99e-01 120 chr3L:2485855-2485975 2.13e-01 120 chrX:15860541-15860661 9.00e-03 85_[+3(9.19e-06)]_27 chr3R:26026739-26026859 1.75e-02 120 chr2R:6749130-6749250 6.87e-03 120 chr2L:12530059-12530179 9.83e-01 120 chr3R:19182991-19183111 9.44e-01 120 chr3L:19650747-19650867 7.58e-03 120 chr2L:1916563-1916683 9.80e-03 41_[+1(8.84e-05)]_71 chr3R:14436549-14436669 1.48e-01 120 chr2R:17533762-17533882 1.79e-01 38_[+2(2.16e-05)]_74 chr2R:18994174-18994294 7.59e-01 120 chr2R:18710737-18710857 7.77e-01 120 chr2R:9061954-9062074 4.09e-01 120 chr3R:16829883-16830003 2.61e-04 18_[+2(7.95e-07)]_94 chrX:15760553-15760673 3.12e-01 120 chr2L:7851756-7851876 9.11e-01 120 chr3R:21837199-21837319 9.01e-01 120 chrX:2624770-2624890 2.65e-06 26_[+1(3.74e-05)]_16_[+3(4.86e-06)]_\ 1_[+5(3.42e-05)]_53 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******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c23n07.farnam.hpc.yale.internal ********************************************************************************