******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17181.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:2906535-2906655 1.0000 120 chr3L:5666926-5667046 1.0000 120 chr3L:3178011-3178131 1.0000 120 chr2R:20231652-20231772 1.0000 120 chr3R:22750178-22750298 1.0000 120 chr3L:6331421-6331541 1.0000 120 chr2R:8861165-8861285 1.0000 120 chrX:13602591-13602711 1.0000 120 chrX:2035498-2035618 1.0000 120 chr3L:15143247-15143367 1.0000 120 chrX:7617520-7617640 1.0000 120 chr3R:16737415-16737535 1.0000 120 chr3L:586720-586840 1.0000 120 chr2L:1646146-1646266 1.0000 120 chr3L:592351-592471 1.0000 120 chr2R:6735193-6735313 1.0000 120 chr3R:30527415-30527535 1.0000 120 chr2R:10315815-10315935 1.0000 120 chr2R:10281424-10281544 1.0000 120 chr2L:3655358-3655478 1.0000 120 chr2R:9579825-9579945 1.0000 120 chr3L:22404299-22404419 1.0000 120 chr3L:2458920-2459040 1.0000 120 chr2L:11875087-11875207 1.0000 120 chr3L:8814064-8814184 1.0000 120 chr3L:6698124-6698244 1.0000 120 chr2L:9551083-9551203 1.0000 120 chr2R:14970511-14970631 1.0000 120 chr2L:16798850-16798970 1.0000 120 chr2R:8121567-8121687 1.0000 120 chr3L:19913447-19913567 1.0000 120 chr2L:17227309-17227429 1.0000 120 chr2R:21047424-21047544 1.0000 120 chr3R:26992336-26992456 1.0000 120 chr3R:21273164-21273284 1.0000 120 chr2R:20939071-20939191 1.0000 120 chr2L:14305753-14305873 1.0000 120 chr3L:17856541-17856661 1.0000 120 chr3R:15282455-15282575 1.0000 120 chr3L:16974218-16974338 1.0000 120 chr3R:8715489-8715609 1.0000 120 chrX:6738583-6738703 1.0000 120 chrX:6871932-6872052 1.0000 120 chr3R:9602251-9602371 1.0000 120 chr3L:12398883-12399003 1.0000 120 chr3L:12892565-12892685 1.0000 120 chr2L:6701939-6702059 1.0000 120 chr3R:15310857-15310977 1.0000 120 chr3R:29146874-29146994 1.0000 120 chr2R:18664330-18664450 1.0000 120 chr2R:17087840-17087960 1.0000 120 chrX:635385-635505 1.0000 120 chr2R:9207778-9207898 1.0000 120 chrX:6709423-6709543 1.0000 120 chr2R:21367036-21367156 1.0000 120 chr2L:10222971-10223091 1.0000 120 chr2R:19169977-19170097 1.0000 120 chr2L:7711143-7711263 1.0000 120 chr2L:7193067-7193187 1.0000 120 chr3L:586920-587040 1.0000 120 chr2R:22544154-22544274 1.0000 120 chr3R:23730667-23730787 1.0000 120 chr3R:26862345-26862465 1.0000 120 chr2L:12528396-12528516 1.0000 120 chr3L:2256913-2257033 1.0000 120 chrX:8576820-8576940 1.0000 120 chr3R:9130306-9130426 1.0000 120 chr3R:15268986-15269106 1.0000 120 chrX:2332788-2332908 1.0000 120 chr2L:4418176-4418296 1.0000 120 chr2R:15247099-15247219 1.0000 120 chr3L:12205606-12205726 1.0000 120 chr3L:1735724-1735844 1.0000 120 chr2L:16234968-16235088 1.0000 120 chr2R:21634221-21634341 1.0000 120 chr2R:21182739-21182859 1.0000 120 chr3R:9628178-9628298 1.0000 120 chr3R:30545077-30545197 1.0000 120 chr2R:15989802-15989922 1.0000 120 chr4:458723-458843 1.0000 120 chr3R:5523516-5523636 1.0000 120 chrX:20916576-20916696 1.0000 120 chr3R:6481872-6481992 1.0000 120 chr2R:20063751-20063871 1.0000 120 chr3L:8128504-8128624 1.0000 120 chr3R:6683780-6683900 1.0000 120 chr3L:587936-588056 1.0000 120 chr3R:24813149-24813269 1.0000 120 chrX:6600833-6600953 1.0000 120 chr2L:16198309-16198429 1.0000 120 chr3L:14664492-14664612 1.0000 120 chr2R:22654623-22654743 1.0000 120 chr3R:23298534-23298654 1.0000 120 chr2R:15050489-15050609 1.0000 120 chr2R:16583385-16583505 1.0000 120 chr3R:27926727-27926847 1.0000 120 chr3R:25056774-25056894 1.0000 120 chr3R:16042700-16042820 1.0000 120 chr3L:3805849-3805969 1.0000 120 chr2R:15675339-15675459 1.0000 120 chr2R:17728676-17728796 1.0000 120 chr2R:24074253-24074373 1.0000 120 chr3L:20932510-20932630 1.0000 120 chrX:8558416-8558536 1.0000 120 chrX:2949233-2949353 1.0000 120 chr3R:29834497-29834617 1.0000 120 chr2L:2576613-2576733 1.0000 120 chr3L:1303093-1303213 1.0000 120 chrX:19765887-19766007 1.0000 120 chr3L:16910290-16910410 1.0000 120 chr2L:1143409-1143529 1.0000 120 chrX:4707610-4707730 1.0000 120 chr3L:6978756-6978876 1.0000 120 chr3R:25056981-25057101 1.0000 120 chrX:4280875-4280995 1.0000 120 chr2L:273059-273179 1.0000 120 chrX:19243723-19243843 1.0000 120 chr3R:14108246-14108366 1.0000 120 chr2L:5560088-5560208 1.0000 120 chr3L:3961157-3961277 1.0000 120 chr2R:9937417-9937537 1.0000 120 chr2R:16339101-16339221 1.0000 120 chrX:7959022-7959142 1.0000 120 chrX:21389092-21389212 1.0000 120 chr2R:7564845-7564965 1.0000 120 chr3L:8747512-8747632 1.0000 120 chrX:18208258-18208378 1.0000 120 chr2L:9558126-9558246 1.0000 120 chr2R:11367762-11367882 1.0000 120 chr3L:2114861-2114981 1.0000 120 chr3R:15486312-15486432 1.0000 120 chr2R:7620978-7621098 1.0000 120 chr2L:7577796-7577916 1.0000 120 chr3L:12519004-12519124 1.0000 120 chr3R:21775966-21776086 1.0000 120 chr2L:10211152-10211272 1.0000 120 chr3R:24812565-24812685 1.0000 120 chrX:21031942-21032062 1.0000 120 chr3L:15073867-15073987 1.0000 120 chr3L:4278102-4278222 1.0000 120 chr2L:308329-308449 1.0000 120 chr3L:8849660-8849780 1.0000 120 chr3L:13519836-13519956 1.0000 120 chrX:9208669-9208789 1.0000 120 chr2R:14352500-14352620 1.0000 120 chr2R:21696903-21697023 1.0000 120 chr3L:16854222-16854342 1.0000 120 chr2R:21674486-21674606 1.0000 120 chr3R:9756432-9756552 1.0000 120 chr2R:13245286-13245406 1.0000 120 chr2R:17726432-17726552 1.0000 120 chr2L:8239397-8239517 1.0000 120 chr2R:17728356-17728476 1.0000 120 chrX:2096455-2096575 1.0000 120 chrX:16422197-16422317 1.0000 120 chr2L:20075011-20075131 1.0000 120 chr3R:29510811-29510931 1.0000 120 chr2L:3507888-3508008 1.0000 120 chr3R:30059995-30060115 1.0000 120 chr2L:839384-839504 1.0000 120 chr3R:31610539-31610659 1.0000 120 chr3R:19486140-19486260 1.0000 120 chrX:10803346-10803466 1.0000 120 chrX:13112032-13112152 1.0000 120 chr3R:29215710-29215830 1.0000 120 chr3R:28628301-28628421 1.0000 120 chr3R:13401395-13401515 1.0000 120 chr3L:6731196-6731316 1.0000 120 chr3R:19002538-19002658 1.0000 120 chr3L:17843516-17843636 1.0000 120 chr2L:9167268-9167388 1.0000 120 chr3L:15329716-15329836 1.0000 120 chr2R:14962179-14962299 1.0000 120 chr3L:16475645-16475765 1.0000 120 chr3L:19202260-19202380 1.0000 120 chr3L:15726752-15726872 1.0000 120 chr2R:9283297-9283417 1.0000 120 chr3R:22233276-22233396 1.0000 120 chrX:3136528-3136648 1.0000 120 chr2L:2733131-2733251 1.0000 120 chrX:1754302-1754422 1.0000 120 chr3L:2765157-2765277 1.0000 120 chr2R:16143073-16143193 1.0000 120 chr3L:349811-349931 1.0000 120 chr2R:22927386-22927506 1.0000 120 chr3L:8411428-8411548 1.0000 120 chr3L:8553271-8553391 1.0000 120 chr3R:12007333-12007453 1.0000 120 chrX:16571000-16571120 1.0000 120 chr3L:9503672-9503792 1.0000 120 chr3R:9393158-9393278 1.0000 120 chr2L:7993389-7993509 1.0000 120 chr3L:3165507-3165627 1.0000 120 chr2L:5490026-5490146 1.0000 120 chr3L:10290546-10290666 1.0000 120 chr2R:14001823-14001943 1.0000 120 chrX:16793306-16793426 1.0000 120 chr2L:6941855-6941975 1.0000 120 chr3R:31987953-31988073 1.0000 120 chr3R:15290243-15290363 1.0000 120 chr2R:9388322-9388442 1.0000 120 chr3R:11449543-11449663 1.0000 120 chr3R:13780899-13781019 1.0000 120 chr3R:31462780-31462900 1.0000 120 chr2L:3000789-3000909 1.0000 120 chr2L:16299491-16299611 1.0000 120 chr2L:11191753-11191873 1.0000 120 chr3L:13863219-13863339 1.0000 120 chr3R:26919844-26919964 1.0000 120 chr3L:2152860-2152980 1.0000 120 chr3L:5754970-5755090 1.0000 120 chrX:16104503-16104623 1.0000 120 chr3R:20542802-20542922 1.0000 120 chr3L:2761800-2761920 1.0000 120 chrX:13189147-13189267 1.0000 120 chrX:2037251-2037371 1.0000 120 chr2R:17730954-17731074 1.0000 120 chr2L:1461015-1461135 1.0000 120 chr2L:16231394-16231514 1.0000 120 chr3L:9501578-9501698 1.0000 120 chr3L:13520040-13520160 1.0000 120 chrX:6678775-6678895 1.0000 120 chr2R:15891533-15891653 1.0000 120 chr3R:25472046-25472166 1.0000 120 chr2R:7053828-7053948 1.0000 120 chr3L:16178627-16178747 1.0000 120 chr3R:9516979-9517099 1.0000 120 chr3R:9886578-9886698 1.0000 120 chr3R:16218806-16218926 1.0000 120 chr3L:478747-478867 1.0000 120 chr3R:14599236-14599356 1.0000 120 chr3L:8576014-8576134 1.0000 120 chr3R:17777097-17777217 1.0000 120 chr3R:16277668-16277788 1.0000 120 chr4:572493-572613 1.0000 120 chr2L:20098334-20098454 1.0000 120 chr2R:7421835-7421955 1.0000 120 chr3R:7995980-7996100 1.0000 120 chr2L:12505170-12505290 1.0000 120 chr2R:13805900-13806020 1.0000 120 chr3R:5321684-5321804 1.0000 120 chr3R:24877171-24877291 1.0000 120 chr3L:9433390-9433510 1.0000 120 chr2R:17697640-17697760 1.0000 120 chr2L:3524543-3524663 1.0000 120 chr2L:12025598-12025718 1.0000 120 chr2L:4955562-4955682 1.0000 120 chr2R:13560480-13560600 1.0000 120 chr3R:12441546-12441666 1.0000 120 chr2R:10124789-10124909 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG17181/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG17181.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.26 C 0.239 G 0.238 T 0.263 Background letter frequencies (from file dataset with add-one prior applied): A 0.26 C 0.239 G 0.238 T 0.263 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CMACHTGT MEME-1 width = 8 sites = 185 llr = 1335 E-value = 3.7e-114 ******************************************************************************** -------------------------------------------------------------------------------- Motif CMACHTGT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 25a:41:: pos.-specific C 75:a3::1 probability G :::::2a: matrix T ::::26:9 bits 2.1 * 1.9 ** * 1.7 ** * 1.4 ** ** Relative 1.2 ** ** Entropy 1.0 **** ** (10.4 bits) 0.8 **** ** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCACATGT consensus AA CG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACHTGT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17730954-17731074 72 1.52e-05 CGGCAATGTC CCACATGT GTGCGATGTG chr3R:29510811-29510931 38 1.52e-05 CACCACTTGG CCACATGT TGCAGTCGCC chr2R:16583385-16583505 74 1.52e-05 AGCTCGATAA CCACATGT TGCTGTCGCG chr3L:16974218-16974338 75 1.52e-05 AATGAAGTTG CCACATGT GGCAACCGTA chr2L:14305753-14305873 61 1.52e-05 CTGGACATGG CCACATGT TGATTCGCAG chr3R:12007333-12007453 59 2.92e-05 TGCGCCATTG CCACCTGT TGCTCCGAAT chr3R:22233276-22233396 51 2.92e-05 GAAAATGAAA CCACCTGT AATCTGTCAA chr3L:6731196-6731316 36 2.92e-05 tgttgggcgg ccacctgt tgatgttgct chr2L:8239397-8239517 50 2.92e-05 CTCTTGTCAA CCACCTGT GGCTGAGttt chr2R:13245286-13245406 48 2.92e-05 CGGCTCGGCT CCACCTGT TCGGCGTCGA chr2R:14352500-14352620 57 2.92e-05 GTCCTATCAA CCACCTGT TTTGATATCA chr3L:3961157-3961277 63 2.92e-05 ATTGTCGCAG CCACCTGT TCACATTGTT chrX:4280875-4280995 41 2.92e-05 caTGGGACAA CCACCTGT CAGGATGGGC chr3R:29834497-29834617 29 2.92e-05 GGAGCCGGTG CCACCTGT TGACACCGCG chr3R:23298534-23298654 16 2.92e-05 CCCACCTTGC CCACCTGT TCTGCTCTTT chr3R:6683780-6683900 61 2.92e-05 AAATTTAGCA CCACCTGT TGGTCAGCAA chr3L:1735724-1735844 61 2.92e-05 GCACCTGCTG CCACCTGT TGCTATCGAA chr2L:4418176-4418296 49 2.92e-05 TATGCGGGGG CCACCTGT TGTTGTAGTT chr2R:22544154-22544274 48 2.92e-05 CTCCCAAGCA CCACCTGT TGCTTCCCAA chr2L:7193067-7193187 44 2.92e-05 TGGATATCCA CCACCTGT TGGCTCTTCT chr2L:7711143-7711263 89 2.92e-05 GCCCACATAG CCACCTGT TCACCCACTT chr3L:15143247-15143367 19 2.92e-05 TCAAAAGCGA CCACCTGT TGAATGCATT chr2L:1461015-1461135 26 4.57e-05 GTGCCAGCTG CAACATGT TGCCAGCGGG chrX:13189147-13189267 77 4.57e-05 CGAATGCCTG CAACATGT GGCATGCGGC chr3L:5754970-5755090 64 4.57e-05 TTGGACCATC CAACATGT GTTTGAACGC chrX:16793306-16793426 30 4.57e-05 TATCATTAAT CAACATGT GCGTACAGGC chr3L:9503672-9503792 33 4.57e-05 CCCACGCAAT CAACATGT TGCACCCACG chr3L:12519004-12519124 100 4.57e-05 ACTTCATTTG CAACATGT TTGTTTACAT chr2R:8861165-8861285 66 4.57e-05 ATGTCAGCGG CAACATGT TGCACATATA chr3R:25472046-25472166 21 6.09e-05 ATCTAAACAG CAACCTGT GCAGCGTGCC chr2L:3000789-3000909 108 6.09e-05 TGGCGCCGAA CAACCTGT TACAT chr2L:5490026-5490146 83 6.09e-05 TGCCGTAAAT CAACCTGT tgctgctgtt chr2L:7993389-7993509 81 6.09e-05 GTCACTTCCG CAACCTGT TGACAATGTT chr3L:349811-349931 69 6.09e-05 TCTCTTTCGC CAACCTGT TGATAACCCA chr3R:31610539-31610659 31 6.09e-05 TTTCTAGAAA CAACCTGT CACACAAACG chrX:16422197-16422317 63 6.09e-05 GGCGGGACAA CAACCTGT TGTTACTTTG chr2R:20063751-20063871 66 6.09e-05 CCCCCAAGAA CAACCTGT TGCTGTTGCA chrX:6871932-6872052 82 6.09e-05 gtgCTGGCCA CAACCTGT TGATGTTGCT chr2R:6735193-6735313 72 6.09e-05 AGTCTGCGTG CAACCTGT TGCAATGTGC chr3L:586720-586840 52 6.09e-05 ACGAATTCGG CAACCTGT TGCGCCCGCT chr3R:12441546-12441666 80 7.62e-05 TTCCACCTGG CCACTTGT TGAGTCATTG chr3R:9516979-9517099 73 7.62e-05 ACTTGTGCTG CCACTTGT TGCCCCTGTT chrX:6678775-6678895 111 7.62e-05 ACCACTGCGA CCACTTGT GG chr3L:2152860-2152980 81 7.62e-05 CACTTGAGGA CCACTTGT TAAATGTTTG chr2L:11191753-11191873 102 7.62e-05 GATCCCAGAG CCACTTGT TACCATCGCA chr3R:13401395-13401515 49 7.62e-05 TCTCGAAATG CCACTTGT TGCTGCCACG chrX:13112032-13112152 32 7.62e-05 ACATCTTCGC CCACTTGT TGCTGTTGCT chrX:9208669-9208789 65 7.62e-05 CCACTTGCCG CCACTTGT TGCGCCTGGA chr2R:7620978-7621098 62 7.62e-05 GTTCAGCCAG CCACTTGT TGCTGTTCCA chr3L:6978756-6978876 60 7.62e-05 CCGATTCGAT CCACTTGT TGCATCGATC chr3L:3805849-3805969 5 7.62e-05 CCGA CCACttgt tgctcatttt chr2L:16198309-16198429 74 7.62e-05 AAACCGGCAA CCACTTGT TGATTTTGTA chr3R:5523516-5523636 82 7.62e-05 TGCATGCCAA CCACTTGT GGCTGTCTGC chr3L:12205606-12205726 21 7.62e-05 TTGACTTCTG CCACTTGT TGCTCTTCGT chr3L:2256913-2257033 98 7.62e-05 TGTAGAAAAA CCACTTGT TGGATATTAT chrX:6709423-6709543 61 7.62e-05 CGAGAGAGTG CCACTTGT TGCCGGTCGT chr2L:9551083-9551203 62 7.62e-05 CTTCCAATGG CCACTTGT GGAGCGTTTA chr2L:3655358-3655478 39 7.62e-05 TTCTTCGTTT CCACTTGT TGATTTGTGA chr3R:7995980-7996100 38 9.00e-05 CGGTCGCTAG CCACAGGT TCTGAGCAAC chr2R:14962179-14962299 64 9.00e-05 GAACTGCATG CCACAGGT AGTTGTTGTT chr3L:15329716-15329836 68 9.00e-05 AGCAAACTCA CCACAGGT AACAGCTGTC chrX:7959022-7959142 62 9.00e-05 GGCAGTACCG CCACAGGT GGCCTGTTTT chr2R:15675339-15675459 103 9.00e-05 TTGTTGGATG CCACAGGT TGTTGGTAAA chrX:2037251-2037371 70 1.07e-04 AAGACGACAA CAACTTGT TGGCCCCTAC chr3L:13519836-13519956 31 1.07e-04 TAGAAAAATC CAACTTGT TGCCGGCCAT chr2R:15989802-15989922 64 1.07e-04 CAAGTAGCGA CAACTTGT TGCCTTGTAC chr3L:6698124-6698244 54 1.07e-04 CAGCAGCTTG CAACTTGT TGCCTCCTCA chr2R:7421835-7421955 69 1.34e-04 GGCTGGCCCA CAACAGGT TGCATGGCAC chr3R:9886578-9886698 59 1.34e-04 GCAGCTGCAG CAACAGGT GATCCTTTGC chr3R:20542802-20542922 62 1.34e-04 GCGAACCGAA CAACAGGT GTGAAAATTA chr3L:2765157-2765277 54 1.34e-04 CGGCACATAG CAACAGGT AGCGGGTACA chr2R:9283297-9283417 66 1.34e-04 CACCGGTGCG CAACAGGT GTGTCAGCAA chr3L:15726752-15726872 45 1.34e-04 GGATTGGGAT CAACAGGT TTCGAGCAGA chr2R:21674486-21674606 26 1.34e-04 ACAGACATAC CAACAGGT GTCACAGCCA chr2R:21696903-21697023 31 1.34e-04 TAAGAAGAGC CAACAGGT GGTTGAAAAT chr3L:15073867-15073987 70 1.34e-04 GAATTATGCC CAACAGGT GCCCCATGCG chr3R:21775966-21776086 45 1.34e-04 AAACATCCTG CAACAGGT GGTCCCATCA chr2R:7564845-7564965 27 1.34e-04 AAGGTAAGTG CAACAGGT GGTTACTCGT chr2R:16339101-16339221 67 1.34e-04 CTCGAGCGTG CAACAGGT TGTCTCTGCC chr3L:1303093-1303213 89 1.34e-04 TCTGAAAAAT CAACAGGT AGCTTCAATG chr3R:16042700-16042820 29 1.34e-04 CAGAAGTAGT CAACAGGT GAACAACTTC chr3R:25056774-25056894 28 1.34e-04 ATCACCATGG CAACAGGT GTCTGTCTGT chr3R:27926727-27926847 28 1.34e-04 TTCGAGCGCA CAACAGGT GGTTGCTCCA chr3R:24813149-24813269 11 1.34e-04 CTTTGATTAA CAACAGGT GTCCGTCCGT chr2R:21182739-21182859 53 1.34e-04 CCCCCAACAC CAACAGGT TGTTGGTTCC chr2R:21634221-21634341 1 1.34e-04 . CAACAGGT GTTTTCAGTT chr3R:15268986-15269106 89 1.34e-04 CTTACGCATG CAACAGGT GCGCGAACAA chr2L:10222971-10223091 83 1.34e-04 ATAGATTAAG CAACAGGT GTTGTTTTAT chr2R:9207778-9207898 67 1.34e-04 TGTGGGGAGC CAACAGGT GGGTGAGCGC chrX:635385-635505 78 1.34e-04 CTAGATGAAT CAACAGGT TTGATCCGGC chr3R:29146874-29146994 42 1.34e-04 TAAACAAATG CAACAGGT GGTTATCGAT chr2R:21047424-21047544 39 1.34e-04 TCTTCCCCAT CAACAGGT AGTAAAACGC chr2L:16798850-16798970 43 1.34e-04 AACACTCGCT CAACAGGT TGCTTGAGCA chr2L:11875087-11875207 52 1.34e-04 GGGGCGCCTT CAACAGGT TGCCACCCAC chrX:2035498-2035618 38 1.34e-04 CAACCTGCCA CAACAGGT GGTTCCCGCT chr3R:9602251-9602371 12 1.51e-04 TCGATTGATA ACACATGT CGATGTTTTT chr2R:13805900-13806020 80 2.09e-04 AGGTAAACAA ACACCTGT AGCACTCGCG chr3R:16277668-16277788 48 2.09e-04 ATATTTTGCT CCACAAGT GAGTGAGTGG chr2R:15891533-15891653 76 2.09e-04 ATCCCTCGAA ACACCTGT CGGATTGAGC chr3L:3165507-3165627 67 2.09e-04 CAACACACAC ACACCTGT AAACCCGTTG chrX:16571000-16571120 108 2.09e-04 GTAACCACAA ACACCTGT TGCGA chrX:10803346-10803466 57 2.09e-04 ATGACACATT CCACAAGT TGCTGCTTGT chrX:2096455-2096575 40 2.09e-04 GCACCCACAC ACACCTGT Tgctcacgca chr2L:308329-308449 19 2.09e-04 GGCAGATAAA ACACCTGT AAATCCCCAC chrX:21031942-21032062 33 2.09e-04 CCAGAGGGCG ACACCTGT TGCGCTGCCG chrX:4707610-4707730 41 2.09e-04 TTTCTAACGG ACACCTGT AGCAACGCGC chrX:2949233-2949353 28 2.09e-04 ATTTAATCTC ACACCTGT TGATATTGTC chr3L:20932510-20932630 49 2.09e-04 GGTGGTTCTG CCACAAGT AGCAAATAAA chr2L:12528396-12528516 53 2.09e-04 TCACATGGAA ACACCTGT TCAGCATTTC chr3L:12892565-12892685 72 2.09e-04 ATAAATAAAA ACACCTGT TCACCAAACA chr2R:10281424-10281544 56 2.09e-04 tcgcgagaGC ACACCTGT TAACGCCAAC chr2R:10315815-10315935 53 2.09e-04 CATTTCGGAA ACACCTGT GCTCCCATTC chr3R:22750178-22750298 22 2.09e-04 CTGCCGGGTG ACACCTGT TGACTTGTAG chr3L:10290546-10290666 43 2.54e-04 GCAACAACAA CCACCAGT TGATTCACCA chr2R:10124789-10124909 35 3.15e-04 GAACGTCGag caacaagt gcagcagcag chr2L:12025598-12025718 27 3.15e-04 GATGGAGCCG CAACAAGT TGTCGCTCTC chr3R:24877171-24877291 86 3.15e-04 CAGCTGACGG CAACAAGT GGTTCGGTCC chr2L:20098334-20098454 102 3.15e-04 CTTTTTCGAA CCACCTGC CTTTGGAAAA chr3L:2761800-2761920 45 3.15e-04 CGCGACACAA CCACCTGC TGTCAGGAAT chr3R:26919844-26919964 41 3.15e-04 ATAGCAACAA CCACCTGC AGCCCACAGG chr3R:31462780-31462900 25 3.15e-04 AATTTGGGGG CAACTGGT GGTTGCCGCA chr2R:16143073-16143193 52 3.15e-04 TGCAGCGCTG CCACCTGC CGACAACCAG chr2L:9167268-9167388 73 3.15e-04 GTGCCGTTGG CAACAAGT GGAATATATA chr2R:17728356-17728476 29 3.15e-04 ACTGGCTGGC CAACAAGT GGTTAGATGT chr3L:16854222-16854342 46 3.15e-04 AGTAGCAAAA CCACCTGC ATTGGTTATA chr2L:1143409-1143529 91 3.15e-04 TGCAGCAGTG CAACAAGT GGGTGGGCTG chrX:8558416-8558536 57 3.15e-04 CCCGTCGAAG CAACTGGT GTCCCAGTGG chr3L:8128504-8128624 112 3.15e-04 acccaaccac ccaCCTGC T chr3R:9628178-9628298 108 3.15e-04 CGGGATTCTT CAACAAGT CGGCC chr3R:26862345-26862465 63 3.15e-04 GACCAAAAGG CAACAAGT GCGCAGTGAA chr2R:18664330-18664450 45 3.15e-04 GAGGCAAGAA CAACAAGT GGCTGCTATA chrX:6738583-6738703 41 3.15e-04 TTTCCGTCAG CAACAAGT GCCGTCTTAA chr3R:26992336-26992456 32 3.15e-04 CACTTGAATG CAACAAGT GGCAAGTCAA chr3L:8814064-8814184 11 3.15e-04 ATAGTACCGC CCACCTGC AGCGATGCCC chrX:7617520-7617640 36 3.15e-04 TCTCCGTCTC CAACAAGT GGCAGTTGAA chrX:13602591-13602711 69 3.15e-04 GCCGATGTGG CAACAAGT GGGTGGTGGT chr2R:20231652-20231772 59 3.15e-04 GCGGTGGCAT CAACAAGT TGCTCCAATT chr3R:9393158-9393278 8 3.47e-04 GTGGCAA ACACTTGT TGCATGACAA chr2L:2733131-2733251 105 3.47e-04 CGGAACAAAA ACACTTGT AGATCGGA chr3R:30059995-30060115 2 3.47e-04 A ACACTTGT TGCTATCTTG chr3R:25056981-25057101 60 3.47e-04 CACTCCGGTG ACACTTGT TGGATTCCGA chr2R:24074253-24074373 6 3.47e-04 TTGAA ACACTTGT GGCTGGCCAC chr2R:17087840-17087960 91 3.47e-04 CCTTTGTGCG ACACTTGT TGCTTCGCTT chr3L:12398883-12399003 52 3.47e-04 TTCTTTTGGG ACACTTGT TGGAATCTGA chr3L:17856541-17856661 41 3.47e-04 CTAATTTTAG ACACTTGT TGCATGCGTG chr3R:21273164-21273284 44 3.47e-04 AAACACAGGC ACACTTGT TGCTCGCCAA chr2R:9579825-9579945 20 3.62e-04 ATGTAAGCCT CAACCAGT CGCAGGCATA chr3R:14108246-14108366 57 4.06e-04 AATTCGACAG CAACCTGC TGCCGCCGCT chr2L:4955562-4955682 25 4.38e-04 CGCAGCATGT CCACTTGC AGTTCATCCG chr3L:13863219-13863339 59 4.38e-04 GCTTACACTT CCACTTGC TCTTCTCTTT chr3R:6481872-6481992 64 4.38e-04 AAATAGACAG AAACTTGT TCATTTTGCT chr3L:8576014-8576134 55 4.97e-04 ACTGCGGAAT CAACTAGT AGCGCTCAAA chr2R:14001823-14001943 54 4.97e-04 GACCAAGGGA AAACAGGT TGCCAAGAAG chr3R:29215710-29215830 38 4.97e-04 GCAAAGGGAC AAACAGGT GGTGATCTTT chr3L:5666926-5667046 69 4.97e-04 AAGAAACAAC AAACAGGT GTCCGTGTGT chr3R:17777097-17777217 5 5.27e-04 ACTA CAACTTGC TGCCAATGTA chr3L:6331421-6331541 4 5.54e-04 gca ccaccggc agcggTTGCA chr2R:17726432-17726552 17 6.13e-04 ATTTGCTGCG CAACAGGC TGTTGTTTTG chr2L:9558126-9558246 86 6.13e-04 GGGATTGCAG CAACAGGC GGAGTGTGTT chr3R:16737415-16737535 8 6.13e-04 CGGCTCG GCACCTGT TAGATGGTGC chrX:18208258-18208378 35 6.44e-04 TGCGCACACA GAACATGT GAATGCAGAG chr2L:2576613-2576733 111 6.44e-04 ACCTGCACGC ACACATGC GC chr2L:12505170-12505290 47 7.61e-04 AGCATAAATA ACACCTGC TTCTGTTTTG chr3R:14599236-14599356 78 7.61e-04 AAGACACTTG ACACCTGC TGCACAATTA chr2R:9388322-9388442 48 7.61e-04 AATAACAGAG ACACCTGC ATCGCACTCG chr3L:4278102-4278222 105 7.61e-04 TCCTGCACGG ACACCTGC TGGCTGGC chr3R:15310857-15310977 91 7.61e-04 CTGCAGACAG ACACCTGC CTGTCACACA chr3L:9433390-9433510 74 7.93e-04 CAGCGCCCAC GCACTTGT TGTTCTGCTT chrX:6600833-6600953 65 7.93e-04 TCAAGCGCAC GCACTTGT TGATTTCGGC chrX:20916576-20916696 62 7.93e-04 AGGGGAACAG GCACTTGT TGAAAATTAA chr2L:16234968-16235088 30 7.93e-04 GCGCGCGCAG GCACTTGT TGATTTCTCA chr3L:22404299-22404419 65 7.93e-04 AAAATTATTG AAACATGC CCATGCCAAG chr3L:3178011-3178131 79 8.22e-04 TCTAGCGCTC CCACCAGC CAGACAGCTA chr3L:9501578-9501698 89 9.09e-04 TAAGTGAAAA CCACGTGT TTCGCCTTCG chrX:1754302-1754422 100 9.09e-04 TCAGCAGCAG CCACGTGT TGCTGCCGCG chr2R:15247099-15247219 91 9.41e-04 GTCCAAAAAA ACACTTGC TATGCGGCGT chr2R:22927386-22927506 56 1.04e-03 GACGCGCCAC GAACAGGT GGGACCAGAG chrX:21389092-21389212 86 1.04e-03 AGACGAAAGC GAACAGGT GGCCGAGGAG chr2R:14970511-14970631 43 1.04e-03 GGCTCCAATC GAACAGGT GGCCGCCCCG chr2L:7577796-7577916 69 1.10e-03 GTTGCATGCC CCACATTT TTGGGGTTAC chr3R:24812565-24812685 57 1.25e-03 ATTACACGCC CAACATTT CTATAAATAG chr4:458723-458843 18 1.25e-03 ccgatctaag caacattt gaggggattg chr2R:19169977-19170097 92 1.41e-03 CACATCTCTG ACACCAGC TACAGGCGCC chr3R:5321684-5321804 110 1.49e-03 TAAAAAACAT AAACAAGC GCA chr3L:19202260-19202380 15 1.49e-03 CACGAAAACT AAACTGGC GTCATTTAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACHTGT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17730954-17731074 1.5e-05 71_[+1]_41 chr3R:29510811-29510931 1.5e-05 37_[+1]_75 chr2R:16583385-16583505 1.5e-05 73_[+1]_39 chr3L:16974218-16974338 1.5e-05 74_[+1]_38 chr2L:14305753-14305873 1.5e-05 60_[+1]_52 chr3R:12007333-12007453 2.9e-05 58_[+1]_54 chr3R:22233276-22233396 2.9e-05 50_[+1]_62 chr3L:6731196-6731316 2.9e-05 35_[+1]_77 chr2L:8239397-8239517 2.9e-05 49_[+1]_63 chr2R:13245286-13245406 2.9e-05 47_[+1]_65 chr2R:14352500-14352620 2.9e-05 56_[+1]_56 chr3L:3961157-3961277 2.9e-05 62_[+1]_50 chrX:4280875-4280995 2.9e-05 40_[+1]_72 chr3R:29834497-29834617 2.9e-05 28_[+1]_84 chr3R:23298534-23298654 2.9e-05 15_[+1]_97 chr3R:6683780-6683900 2.9e-05 60_[+1]_52 chr3L:1735724-1735844 2.9e-05 60_[+1]_52 chr2L:4418176-4418296 2.9e-05 48_[+1]_64 chr2R:22544154-22544274 2.9e-05 47_[+1]_65 chr2L:7193067-7193187 2.9e-05 43_[+1]_69 chr2L:7711143-7711263 2.9e-05 88_[+1]_24 chr3L:15143247-15143367 2.9e-05 18_[+1]_94 chr2L:1461015-1461135 4.6e-05 25_[+1]_87 chrX:13189147-13189267 4.6e-05 76_[+1]_36 chr3L:5754970-5755090 4.6e-05 63_[+1]_49 chrX:16793306-16793426 4.6e-05 29_[+1]_83 chr3L:9503672-9503792 4.6e-05 32_[+1]_80 chr3L:12519004-12519124 4.6e-05 99_[+1]_13 chr2R:8861165-8861285 4.6e-05 65_[+1]_47 chr3R:25472046-25472166 6.1e-05 20_[+1]_92 chr2L:3000789-3000909 6.1e-05 107_[+1]_5 chr2L:5490026-5490146 6.1e-05 82_[+1]_30 chr2L:7993389-7993509 6.1e-05 80_[+1]_32 chr3L:349811-349931 6.1e-05 68_[+1]_44 chr3R:31610539-31610659 6.1e-05 30_[+1]_82 chrX:16422197-16422317 6.1e-05 62_[+1]_50 chr2R:20063751-20063871 6.1e-05 65_[+1]_47 chrX:6871932-6872052 6.1e-05 81_[+1]_31 chr2R:6735193-6735313 6.1e-05 71_[+1]_41 chr3L:586720-586840 6.1e-05 51_[+1]_61 chr3R:12441546-12441666 7.6e-05 79_[+1]_33 chr3R:9516979-9517099 7.6e-05 72_[+1]_40 chrX:6678775-6678895 7.6e-05 110_[+1]_2 chr3L:2152860-2152980 7.6e-05 80_[+1]_32 chr2L:11191753-11191873 7.6e-05 101_[+1]_11 chr3R:13401395-13401515 7.6e-05 48_[+1]_64 chrX:13112032-13112152 7.6e-05 31_[+1]_81 chrX:9208669-9208789 7.6e-05 64_[+1]_48 chr2R:7620978-7621098 7.6e-05 61_[+1]_51 chr3L:6978756-6978876 7.6e-05 59_[+1]_53 chr3L:3805849-3805969 7.6e-05 4_[+1]_108 chr2L:16198309-16198429 7.6e-05 73_[+1]_39 chr3R:5523516-5523636 7.6e-05 81_[+1]_31 chr3L:12205606-12205726 7.6e-05 20_[+1]_92 chr3L:2256913-2257033 7.6e-05 97_[+1]_15 chrX:6709423-6709543 7.6e-05 60_[+1]_52 chr2L:9551083-9551203 7.6e-05 61_[+1]_51 chr2L:3655358-3655478 7.6e-05 38_[+1]_74 chr3R:7995980-7996100 9e-05 37_[+1]_75 chr2R:14962179-14962299 9e-05 63_[+1]_49 chr3L:15329716-15329836 9e-05 67_[+1]_45 chrX:7959022-7959142 9e-05 61_[+1]_51 chr2R:15675339-15675459 9e-05 102_[+1]_10 chrX:2037251-2037371 0.00011 69_[+1]_43 chr3L:13519836-13519956 0.00011 30_[+1]_82 chr2R:15989802-15989922 0.00011 63_[+1]_49 chr3L:6698124-6698244 0.00011 53_[+1]_59 chr2R:7421835-7421955 0.00013 68_[+1]_44 chr3R:9886578-9886698 0.00013 58_[+1]_54 chr3R:20542802-20542922 0.00013 61_[+1]_51 chr3L:2765157-2765277 0.00013 53_[+1]_59 chr2R:9283297-9283417 0.00013 65_[+1]_47 chr3L:15726752-15726872 0.00013 44_[+1]_68 chr2R:21674486-21674606 0.00013 25_[+1]_87 chr2R:21696903-21697023 0.00013 30_[+1]_82 chr3L:15073867-15073987 0.00013 69_[+1]_43 chr3R:21775966-21776086 0.00013 44_[+1]_68 chr2R:7564845-7564965 0.00013 26_[+1]_86 chr2R:16339101-16339221 0.00013 66_[+1]_46 chr3L:1303093-1303213 0.00013 88_[+1]_24 chr3R:16042700-16042820 0.00013 28_[+1]_84 chr3R:25056774-25056894 0.00013 27_[+1]_85 chr3R:27926727-27926847 0.00013 27_[+1]_85 chr3R:24813149-24813269 0.00013 10_[+1]_102 chr2R:21182739-21182859 0.00013 52_[+1]_60 chr2R:21634221-21634341 0.00013 [+1]_112 chr3R:15268986-15269106 0.00013 88_[+1]_24 chr2L:10222971-10223091 0.00013 82_[+1]_30 chr2R:9207778-9207898 0.00013 66_[+1]_46 chrX:635385-635505 0.00013 77_[+1]_35 chr3R:29146874-29146994 0.00013 41_[+1]_71 chr2R:21047424-21047544 0.00013 38_[+1]_74 chr2L:16798850-16798970 0.00013 42_[+1]_70 chr2L:11875087-11875207 0.00013 51_[+1]_61 chrX:2035498-2035618 0.00013 37_[+1]_75 chr3R:9602251-9602371 0.00015 11_[+1]_101 chr2R:13805900-13806020 0.00021 79_[+1]_33 chr3R:16277668-16277788 0.00021 47_[+1]_65 chr2R:15891533-15891653 0.00021 75_[+1]_37 chr3L:3165507-3165627 0.00021 66_[+1]_46 chrX:16571000-16571120 0.00021 107_[+1]_5 chrX:10803346-10803466 0.00021 56_[+1]_56 chrX:2096455-2096575 0.00021 39_[+1]_73 chr2L:308329-308449 0.00021 18_[+1]_94 chrX:21031942-21032062 0.00021 32_[+1]_80 chrX:4707610-4707730 0.00021 40_[+1]_72 chrX:2949233-2949353 0.00021 27_[+1]_85 chr3L:20932510-20932630 0.00021 48_[+1]_64 chr2L:12528396-12528516 0.00021 52_[+1]_60 chr3L:12892565-12892685 0.00021 71_[+1]_41 chr2R:10281424-10281544 0.00021 55_[+1]_57 chr2R:10315815-10315935 0.00021 52_[+1]_60 chr3R:22750178-22750298 0.00021 21_[+1]_91 chr3L:10290546-10290666 0.00025 42_[+1]_70 chr2R:10124789-10124909 0.00031 34_[+1]_78 chr2L:12025598-12025718 0.00031 26_[+1]_86 chr3R:24877171-24877291 0.00031 85_[+1]_27 chr2L:20098334-20098454 0.00031 101_[+1]_11 chr3L:2761800-2761920 0.00031 44_[+1]_68 chr3R:26919844-26919964 0.00031 40_[+1]_72 chr3R:31462780-31462900 0.00031 24_[+1]_88 chr2R:16143073-16143193 0.00031 51_[+1]_61 chr2L:9167268-9167388 0.00031 72_[+1]_40 chr2R:17728356-17728476 0.00031 28_[+1]_84 chr3L:16854222-16854342 0.00031 45_[+1]_67 chr2L:1143409-1143529 0.00031 90_[+1]_22 chrX:8558416-8558536 0.00031 56_[+1]_56 chr3L:8128504-8128624 0.00031 111_[+1]_1 chr3R:9628178-9628298 0.00031 107_[+1]_5 chr3R:26862345-26862465 0.00031 62_[+1]_50 chr2R:18664330-18664450 0.00031 44_[+1]_68 chrX:6738583-6738703 0.00031 40_[+1]_72 chr3R:26992336-26992456 0.00031 31_[+1]_81 chr3L:8814064-8814184 0.00031 10_[+1]_102 chrX:7617520-7617640 0.00031 35_[+1]_77 chrX:13602591-13602711 0.00031 68_[+1]_44 chr2R:20231652-20231772 0.00031 58_[+1]_54 chr3R:9393158-9393278 0.00035 7_[+1]_105 chr2L:2733131-2733251 0.00035 104_[+1]_8 chr3R:30059995-30060115 0.00035 1_[+1]_111 chr3R:25056981-25057101 0.00035 59_[+1]_53 chr2R:24074253-24074373 0.00035 5_[+1]_107 chr2R:17087840-17087960 0.00035 90_[+1]_22 chr3L:12398883-12399003 0.00035 51_[+1]_61 chr3L:17856541-17856661 0.00035 40_[+1]_72 chr3R:21273164-21273284 0.00035 43_[+1]_69 chr2R:9579825-9579945 0.00036 19_[+1]_93 chr3R:14108246-14108366 0.00041 56_[+1]_56 chr2L:4955562-4955682 0.00044 24_[+1]_88 chr3L:13863219-13863339 0.00044 58_[+1]_54 chr3R:6481872-6481992 0.00044 63_[+1]_49 chr3L:8576014-8576134 0.0005 54_[+1]_58 chr2R:14001823-14001943 0.0005 53_[+1]_59 chr3R:29215710-29215830 0.0005 37_[+1]_75 chr3L:5666926-5667046 0.0005 68_[+1]_44 chr3R:17777097-17777217 0.00053 4_[+1]_108 chr3L:6331421-6331541 0.00055 3_[+1]_109 chr2R:17726432-17726552 0.00061 16_[+1]_96 chr2L:9558126-9558246 0.00061 85_[+1]_27 chr3R:16737415-16737535 0.00061 7_[+1]_105 chrX:18208258-18208378 0.00064 34_[+1]_78 chr2L:2576613-2576733 0.00064 110_[+1]_2 chr2L:12505170-12505290 0.00076 46_[+1]_66 chr3R:14599236-14599356 0.00076 77_[+1]_35 chr2R:9388322-9388442 0.00076 47_[+1]_65 chr3L:4278102-4278222 0.00076 104_[+1]_8 chr3R:15310857-15310977 0.00076 90_[+1]_22 chr3L:9433390-9433510 0.00079 73_[+1]_39 chrX:6600833-6600953 0.00079 64_[+1]_48 chrX:20916576-20916696 0.00079 61_[+1]_51 chr2L:16234968-16235088 0.00079 29_[+1]_83 chr3L:22404299-22404419 0.00079 64_[+1]_48 chr3L:3178011-3178131 0.00082 78_[+1]_34 chr3L:9501578-9501698 0.00091 88_[+1]_24 chrX:1754302-1754422 0.00091 99_[+1]_13 chr2R:15247099-15247219 0.00094 90_[+1]_22 chr2R:22927386-22927506 0.001 55_[+1]_57 chrX:21389092-21389212 0.001 85_[+1]_27 chr2R:14970511-14970631 0.001 42_[+1]_70 chr2L:7577796-7577916 0.0011 68_[+1]_44 chr3R:24812565-24812685 0.0012 56_[+1]_56 chr4:458723-458843 0.0012 17_[+1]_95 chr2R:19169977-19170097 0.0014 91_[+1]_21 chr3R:5321684-5321804 0.0015 109_[+1]_3 chr3L:19202260-19202380 0.0015 14_[+1]_98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACHTGT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CMACHTGT width=8 seqs=185 chr2R:17730954-17731074 ( 72) CCACATGT 1 chr3R:29510811-29510931 ( 38) CCACATGT 1 chr2R:16583385-16583505 ( 74) CCACATGT 1 chr3L:16974218-16974338 ( 75) CCACATGT 1 chr2L:14305753-14305873 ( 61) CCACATGT 1 chr3R:12007333-12007453 ( 59) CCACCTGT 1 chr3R:22233276-22233396 ( 51) CCACCTGT 1 chr3L:6731196-6731316 ( 36) CCACCTGT 1 chr2L:8239397-8239517 ( 50) CCACCTGT 1 chr2R:13245286-13245406 ( 48) CCACCTGT 1 chr2R:14352500-14352620 ( 57) CCACCTGT 1 chr3L:3961157-3961277 ( 63) CCACCTGT 1 chrX:4280875-4280995 ( 41) CCACCTGT 1 chr3R:29834497-29834617 ( 29) CCACCTGT 1 chr3R:23298534-23298654 ( 16) CCACCTGT 1 chr3R:6683780-6683900 ( 61) CCACCTGT 1 chr3L:1735724-1735844 ( 61) CCACCTGT 1 chr2L:4418176-4418296 ( 49) CCACCTGT 1 chr2R:22544154-22544274 ( 48) CCACCTGT 1 chr2L:7193067-7193187 ( 44) CCACCTGT 1 chr2L:7711143-7711263 ( 89) CCACCTGT 1 chr3L:15143247-15143367 ( 19) CCACCTGT 1 chr2L:1461015-1461135 ( 26) CAACATGT 1 chrX:13189147-13189267 ( 77) CAACATGT 1 chr3L:5754970-5755090 ( 64) CAACATGT 1 chrX:16793306-16793426 ( 30) CAACATGT 1 chr3L:9503672-9503792 ( 33) CAACATGT 1 chr3L:12519004-12519124 ( 100) CAACATGT 1 chr2R:8861165-8861285 ( 66) CAACATGT 1 chr3R:25472046-25472166 ( 21) CAACCTGT 1 chr2L:3000789-3000909 ( 108) CAACCTGT 1 chr2L:5490026-5490146 ( 83) CAACCTGT 1 chr2L:7993389-7993509 ( 81) CAACCTGT 1 chr3L:349811-349931 ( 69) CAACCTGT 1 chr3R:31610539-31610659 ( 31) CAACCTGT 1 chrX:16422197-16422317 ( 63) CAACCTGT 1 chr2R:20063751-20063871 ( 66) CAACCTGT 1 chrX:6871932-6872052 ( 82) CAACCTGT 1 chr2R:6735193-6735313 ( 72) CAACCTGT 1 chr3L:586720-586840 ( 52) CAACCTGT 1 chr3R:12441546-12441666 ( 80) CCACTTGT 1 chr3R:9516979-9517099 ( 73) CCACTTGT 1 chrX:6678775-6678895 ( 111) CCACTTGT 1 chr3L:2152860-2152980 ( 81) CCACTTGT 1 chr2L:11191753-11191873 ( 102) CCACTTGT 1 chr3R:13401395-13401515 ( 49) CCACTTGT 1 chrX:13112032-13112152 ( 32) CCACTTGT 1 chrX:9208669-9208789 ( 65) CCACTTGT 1 chr2R:7620978-7621098 ( 62) CCACTTGT 1 chr3L:6978756-6978876 ( 60) CCACTTGT 1 chr3L:3805849-3805969 ( 5) CCACTTGT 1 chr2L:16198309-16198429 ( 74) CCACTTGT 1 chr3R:5523516-5523636 ( 82) CCACTTGT 1 chr3L:12205606-12205726 ( 21) CCACTTGT 1 chr3L:2256913-2257033 ( 98) CCACTTGT 1 chrX:6709423-6709543 ( 61) CCACTTGT 1 chr2L:9551083-9551203 ( 62) CCACTTGT 1 chr2L:3655358-3655478 ( 39) CCACTTGT 1 chr3R:7995980-7996100 ( 38) CCACAGGT 1 chr2R:14962179-14962299 ( 64) CCACAGGT 1 chr3L:15329716-15329836 ( 68) CCACAGGT 1 chrX:7959022-7959142 ( 62) CCACAGGT 1 chr2R:15675339-15675459 ( 103) CCACAGGT 1 chrX:2037251-2037371 ( 70) CAACTTGT 1 chr3L:13519836-13519956 ( 31) CAACTTGT 1 chr2R:15989802-15989922 ( 64) CAACTTGT 1 chr3L:6698124-6698244 ( 54) CAACTTGT 1 chr2R:7421835-7421955 ( 69) CAACAGGT 1 chr3R:9886578-9886698 ( 59) CAACAGGT 1 chr3R:20542802-20542922 ( 62) CAACAGGT 1 chr3L:2765157-2765277 ( 54) CAACAGGT 1 chr2R:9283297-9283417 ( 66) CAACAGGT 1 chr3L:15726752-15726872 ( 45) CAACAGGT 1 chr2R:21674486-21674606 ( 26) CAACAGGT 1 chr2R:21696903-21697023 ( 31) CAACAGGT 1 chr3L:15073867-15073987 ( 70) CAACAGGT 1 chr3R:21775966-21776086 ( 45) CAACAGGT 1 chr2R:7564845-7564965 ( 27) CAACAGGT 1 chr2R:16339101-16339221 ( 67) CAACAGGT 1 chr3L:1303093-1303213 ( 89) CAACAGGT 1 chr3R:16042700-16042820 ( 29) CAACAGGT 1 chr3R:25056774-25056894 ( 28) CAACAGGT 1 chr3R:27926727-27926847 ( 28) CAACAGGT 1 chr3R:24813149-24813269 ( 11) CAACAGGT 1 chr2R:21182739-21182859 ( 53) CAACAGGT 1 chr2R:21634221-21634341 ( 1) CAACAGGT 1 chr3R:15268986-15269106 ( 89) CAACAGGT 1 chr2L:10222971-10223091 ( 83) CAACAGGT 1 chr2R:9207778-9207898 ( 67) CAACAGGT 1 chrX:635385-635505 ( 78) CAACAGGT 1 chr3R:29146874-29146994 ( 42) CAACAGGT 1 chr2R:21047424-21047544 ( 39) CAACAGGT 1 chr2L:16798850-16798970 ( 43) CAACAGGT 1 chr2L:11875087-11875207 ( 52) CAACAGGT 1 chrX:2035498-2035618 ( 38) CAACAGGT 1 chr3R:9602251-9602371 ( 12) ACACATGT 1 chr2R:13805900-13806020 ( 80) ACACCTGT 1 chr3R:16277668-16277788 ( 48) CCACAAGT 1 chr2R:15891533-15891653 ( 76) ACACCTGT 1 chr3L:3165507-3165627 ( 67) ACACCTGT 1 chrX:16571000-16571120 ( 108) ACACCTGT 1 chrX:10803346-10803466 ( 57) CCACAAGT 1 chrX:2096455-2096575 ( 40) ACACCTGT 1 chr2L:308329-308449 ( 19) ACACCTGT 1 chrX:21031942-21032062 ( 33) ACACCTGT 1 chrX:4707610-4707730 ( 41) ACACCTGT 1 chrX:2949233-2949353 ( 28) ACACCTGT 1 chr3L:20932510-20932630 ( 49) CCACAAGT 1 chr2L:12528396-12528516 ( 53) ACACCTGT 1 chr3L:12892565-12892685 ( 72) ACACCTGT 1 chr2R:10281424-10281544 ( 56) ACACCTGT 1 chr2R:10315815-10315935 ( 53) ACACCTGT 1 chr3R:22750178-22750298 ( 22) ACACCTGT 1 chr3L:10290546-10290666 ( 43) CCACCAGT 1 chr2R:10124789-10124909 ( 35) CAACAAGT 1 chr2L:12025598-12025718 ( 27) CAACAAGT 1 chr3R:24877171-24877291 ( 86) CAACAAGT 1 chr2L:20098334-20098454 ( 102) CCACCTGC 1 chr3L:2761800-2761920 ( 45) CCACCTGC 1 chr3R:26919844-26919964 ( 41) CCACCTGC 1 chr3R:31462780-31462900 ( 25) CAACTGGT 1 chr2R:16143073-16143193 ( 52) CCACCTGC 1 chr2L:9167268-9167388 ( 73) CAACAAGT 1 chr2R:17728356-17728476 ( 29) CAACAAGT 1 chr3L:16854222-16854342 ( 46) CCACCTGC 1 chr2L:1143409-1143529 ( 91) CAACAAGT 1 chrX:8558416-8558536 ( 57) CAACTGGT 1 chr3L:8128504-8128624 ( 112) CCACCTGC 1 chr3R:9628178-9628298 ( 108) CAACAAGT 1 chr3R:26862345-26862465 ( 63) CAACAAGT 1 chr2R:18664330-18664450 ( 45) CAACAAGT 1 chrX:6738583-6738703 ( 41) CAACAAGT 1 chr3R:26992336-26992456 ( 32) CAACAAGT 1 chr3L:8814064-8814184 ( 11) CCACCTGC 1 chrX:7617520-7617640 ( 36) CAACAAGT 1 chrX:13602591-13602711 ( 69) CAACAAGT 1 chr2R:20231652-20231772 ( 59) CAACAAGT 1 chr3R:9393158-9393278 ( 8) ACACTTGT 1 chr2L:2733131-2733251 ( 105) ACACTTGT 1 chr3R:30059995-30060115 ( 2) ACACTTGT 1 chr3R:25056981-25057101 ( 60) ACACTTGT 1 chr2R:24074253-24074373 ( 6) ACACTTGT 1 chr2R:17087840-17087960 ( 91) ACACTTGT 1 chr3L:12398883-12399003 ( 52) ACACTTGT 1 chr3L:17856541-17856661 ( 41) ACACTTGT 1 chr3R:21273164-21273284 ( 44) ACACTTGT 1 chr2R:9579825-9579945 ( 20) CAACCAGT 1 chr3R:14108246-14108366 ( 57) CAACCTGC 1 chr2L:4955562-4955682 ( 25) CCACTTGC 1 chr3L:13863219-13863339 ( 59) CCACTTGC 1 chr3R:6481872-6481992 ( 64) AAACTTGT 1 chr3L:8576014-8576134 ( 55) CAACTAGT 1 chr2R:14001823-14001943 ( 54) AAACAGGT 1 chr3R:29215710-29215830 ( 38) AAACAGGT 1 chr3L:5666926-5667046 ( 69) AAACAGGT 1 chr3R:17777097-17777217 ( 5) CAACTTGC 1 chr3L:6331421-6331541 ( 4) CCACCGGC 1 chr2R:17726432-17726552 ( 17) CAACAGGC 1 chr2L:9558126-9558246 ( 86) CAACAGGC 1 chr3R:16737415-16737535 ( 8) GCACCTGT 1 chrX:18208258-18208378 ( 35) GAACATGT 1 chr2L:2576613-2576733 ( 111) ACACATGC 1 chr2L:12505170-12505290 ( 47) ACACCTGC 1 chr3R:14599236-14599356 ( 78) ACACCTGC 1 chr2R:9388322-9388442 ( 48) ACACCTGC 1 chr3L:4278102-4278222 ( 105) ACACCTGC 1 chr3R:15310857-15310977 ( 91) ACACCTGC 1 chr3L:9433390-9433510 ( 74) GCACTTGT 1 chrX:6600833-6600953 ( 65) GCACTTGT 1 chrX:20916576-20916696 ( 62) GCACTTGT 1 chr2L:16234968-16235088 ( 30) GCACTTGT 1 chr3L:22404299-22404419 ( 65) AAACATGC 1 chr3L:3178011-3178131 ( 79) CCACCAGC 1 chr3L:9501578-9501698 ( 89) CCACGTGT 1 chrX:1754302-1754422 ( 100) CCACGTGT 1 chr2R:15247099-15247219 ( 91) ACACTTGC 1 chr2R:22927386-22927506 ( 56) GAACAGGT 1 chrX:21389092-21389212 ( 86) GAACAGGT 1 chr2R:14970511-14970631 ( 43) GAACAGGT 1 chr2L:7577796-7577916 ( 69) CCACATTT 1 chr3R:24812565-24812685 ( 57) CAACATTT 1 chr4:458723-458843 ( 18) CAACATTT 1 chr2R:19169977-19170097 ( 92) ACACCAGC 1 chr3R:5321684-5321804 ( 110) AAACAAGC 1 chr3L:19202260-19202380 ( 15) AAACTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACHTGT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.81467 E= 3.7e-114 -30 163 -229 -1418 82 118 -1418 -1418 194 -1418 -1418 -1418 -1418 207 -1418 -1418 70 47 -446 -14 -106 -1418 3 127 -1418 -1418 204 -402 -1418 -76 -1418 171 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACHTGT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 185 E= 3.7e-114 0.210811 0.740541 0.048649 0.000000 0.459459 0.540541 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.421622 0.329730 0.010811 0.237838 0.124324 0.000000 0.243243 0.632432 0.000000 0.000000 0.983784 0.016216 0.000000 0.140541 0.000000 0.859459 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMACHTGT MEME-1 regular expression -------------------------------------------------------------------------------- [CA][CA]AC[ACT][TG]GT -------------------------------------------------------------------------------- Time 8.85 secs. ******************************************************************************** ******************************************************************************** MOTIF CARGTGGY MEME-2 width = 8 sites = 21 llr = 203 E-value = 1.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CARGTGGY MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a4::::: pos.-specific C a::::::3 probability G ::6a:aa: matrix T ::::a::7 bits 2.1 * * * 1.9 ** **** 1.7 ** **** 1.4 ** **** Relative 1.2 ** **** Entropy 1.0 ******** (14.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGGTGGT consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARGTGGY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:478747-478867 68 1.38e-05 AAAGTGCAGG CAGGTGGT TAAAAGGGGA chr2L:16299491-16299611 86 1.38e-05 GTGGAGAGCT CAGGTGGT CGGGGTCCCG chr3R:31462780-31462900 88 1.38e-05 CTCCCAACAC CAGGTGGT ACTGGTGGCT chr3R:12007333-12007453 103 1.38e-05 GCACTTTGAG CAGGTGGT GCAAATCGAA chrX:3136528-3136648 11 1.38e-05 GCTTTTCGGA CAGGTGGT CGTTTTTTTT chr3L:6331421-6331541 71 1.38e-05 TGCTCCTCCT CAGGTGGT TGTTGTTTAT chr3L:2906535-2906655 49 1.38e-05 TTCCATTTAT CAGGTGGT TTCCCAAAGG chr4:572493-572613 86 2.63e-05 CGTAATCTGT CAGGTGGC GGTAGTCAAC chr3R:28628301-28628421 59 2.63e-05 GCTTCGTTAG CAGGTGGC TGTCAAATTT chr3L:12519004-12519124 51 2.63e-05 GCAGACGCAA CAGGTGGC GGCAGTTTGT chr2R:17728676-17728796 85 2.63e-05 CGGTTTGCTG CAGGTGGC AGCTCCGCCC chr3R:9602251-9602371 37 2.63e-05 TTTTGGAAAA CAGGTGGC TGCGatgtat chr2R:13560480-13560600 3 4.14e-05 AT CAAGTGGT TGGTTGACCC chr3R:16218806-16218926 113 4.14e-05 CCGCGAGTAA CAAGTGGT chr3L:13863219-13863339 30 4.14e-05 CGACAATCTA CAAGTGGT CGCTATGACA chr2R:9283297-9283417 26 4.14e-05 TGATGACCCA CAAGTGGT TTCCGTCAGC chr2R:15675339-15675459 5 4.14e-05 ACAA CAAGTGGT TCTCAATCGG chr3L:14664492-14664612 58 4.14e-05 TTTCGGGCGT CAAGTGGT TCTGCCCCCA chr2L:839384-839504 81 5.51e-05 gtggcagctg caagtggc aaaaacaaag chr3R:26992336-26992456 47 5.51e-05 AGTGGCAAGT CAAGTGGC GCATCCCCGG chr3L:19913447-19913567 31 7.03e-05 GCACTTCTAA CAGGTGTT TCTGGGTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARGTGGY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:478747-478867 1.4e-05 67_[+2]_45 chr2L:16299491-16299611 1.4e-05 85_[+2]_27 chr3R:31462780-31462900 1.4e-05 87_[+2]_25 chr3R:12007333-12007453 1.4e-05 102_[+2]_10 chrX:3136528-3136648 1.4e-05 10_[+2]_102 chr3L:6331421-6331541 1.4e-05 70_[+2]_42 chr3L:2906535-2906655 1.4e-05 48_[+2]_64 chr4:572493-572613 2.6e-05 85_[+2]_27 chr3R:28628301-28628421 2.6e-05 58_[+2]_54 chr3L:12519004-12519124 2.6e-05 50_[+2]_62 chr2R:17728676-17728796 2.6e-05 84_[+2]_28 chr3R:9602251-9602371 2.6e-05 36_[+2]_76 chr2R:13560480-13560600 4.1e-05 2_[+2]_110 chr3R:16218806-16218926 4.1e-05 112_[+2] chr3L:13863219-13863339 4.1e-05 29_[+2]_83 chr2R:9283297-9283417 4.1e-05 25_[+2]_87 chr2R:15675339-15675459 4.1e-05 4_[+2]_108 chr3L:14664492-14664612 4.1e-05 57_[+2]_55 chr2L:839384-839504 5.5e-05 80_[+2]_32 chr3R:26992336-26992456 5.5e-05 46_[+2]_66 chr3L:19913447-19913567 7e-05 30_[+2]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARGTGGY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CARGTGGY width=8 seqs=21 chr3L:478747-478867 ( 68) CAGGTGGT 1 chr2L:16299491-16299611 ( 86) CAGGTGGT 1 chr3R:31462780-31462900 ( 88) CAGGTGGT 1 chr3R:12007333-12007453 ( 103) CAGGTGGT 1 chrX:3136528-3136648 ( 11) CAGGTGGT 1 chr3L:6331421-6331541 ( 71) CAGGTGGT 1 chr3L:2906535-2906655 ( 49) CAGGTGGT 1 chr4:572493-572613 ( 86) CAGGTGGC 1 chr3R:28628301-28628421 ( 59) CAGGTGGC 1 chr3L:12519004-12519124 ( 51) CAGGTGGC 1 chr2R:17728676-17728796 ( 85) CAGGTGGC 1 chr3R:9602251-9602371 ( 37) CAGGTGGC 1 chr2R:13560480-13560600 ( 3) CAAGTGGT 1 chr3R:16218806-16218926 ( 113) CAAGTGGT 1 chr3L:13863219-13863339 ( 30) CAAGTGGT 1 chr2R:9283297-9283417 ( 26) CAAGTGGT 1 chr2R:15675339-15675459 ( 5) CAAGTGGT 1 chr3L:14664492-14664612 ( 58) CAAGTGGT 1 chr2L:839384-839504 ( 81) CAAGTGGC 1 chr3R:26992336-26992456 ( 47) CAAGTGGC 1 chr3L:19913447-19913567 ( 31) CAGGTGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARGTGGY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.8872 E= 1.3e+000 -1104 207 -1104 -1104 194 -1104 -1104 -1104 55 -1104 138 -1104 -1104 -1104 207 -1104 -1104 -1104 -1104 193 -1104 -1104 207 -1104 -1104 -1104 200 -246 -1104 48 -1104 134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARGTGGY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.3e+000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.380952 0.000000 0.619048 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.952381 0.047619 0.000000 0.333333 0.000000 0.666667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARGTGGY MEME-2 regular expression -------------------------------------------------------------------------------- CA[GA]GTGG[TC] -------------------------------------------------------------------------------- Time 14.85 secs. ******************************************************************************** ******************************************************************************** MOTIF WAWAMAWA MEME-3 width = 8 sites = 72 llr = 545 E-value = 1.7e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif WAWAMAWA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3a6a4a6a pos.-specific C 1:::4::: probability G :::::::: matrix T 6:4:1:4: bits 2.1 1.9 * * * * 1.7 * * * * 1.4 * * * * Relative 1.2 * * * * Entropy 1.0 *** *** (10.9 bits) 0.8 *** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAAAAAAA consensus A T C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAWAMAWA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:20542802-20542922 8 1.94e-05 GAGAAAG TAAACAAA AAAACGAACC chrX:9208669-9208789 17 1.94e-05 CCGTTAAAAA TAAACAAA ATTGTTTATG chr2L:9558126-9558246 38 1.94e-05 GGAATTGTTC TAAACAAA ACCGATACGG chr2R:9937417-9937537 105 1.94e-05 AAGTTAAATT TAAACAAA AACCAAAA chr3R:14108246-14108366 8 1.94e-05 AATGATA TAAACAAA TTTTCAATTA chr3R:29146874-29146994 32 1.94e-05 ATACAAAACG TAAACAAA TGCAACAGGT chr3L:2458920-2459040 29 1.94e-05 ATAGGCCTGA TAAACAAA ACAAATATCG chr3L:5666926-5667046 110 1.94e-05 TCAACTGATG TAAACAAA AGT chrX:16571000-16571120 65 4.05e-05 ACTGAAATCA TAAAAAAA AAATCTGCTT chr3R:19002538-19002658 12 4.05e-05 ACTCCAAAAA TAAAAAAA GGTGCCAAGG chr3L:16854222-16854342 78 4.05e-05 TATATGCGGT TAAAAAAA TAACAAATTG chrX:7617520-7617640 113 4.05e-05 CCACCAAGCA Taaaaaaa chr3L:15726752-15726872 14 6.02e-05 GTAAAGTGCC TAAACATA TGATTTATTT chr3R:17777097-17777217 21 8.16e-05 GCTGCCAATG TAAAAATA GTATGCTGCA chr3L:3961157-3961277 30 8.16e-05 GCCTGGCTAC TAAAAATA AATACGAGCA chr3R:9130306-9130426 12 8.16e-05 TCTTCCAAAT TAAAAATA AATTTTTACC chr2L:6701939-6702059 89 8.16e-05 TATTTACGTT TAAAAATA AAACGCATTG chr2L:17227309-17227429 29 8.16e-05 CTCAAATCTA TAAAAATA AGCTCCGATT chr3R:16737415-16737535 75 8.16e-05 AAATAATATT TAAAAATA CATTAGTTCT chr3L:3178011-3178131 53 8.16e-05 TGCGAGTGGC TAAAAATA GACCCATTTC chr2L:9167268-9167388 87 1.01e-04 AAGTGGAATA TATACAAA CGAAATTCAT chr2R:15989802-15989922 27 1.01e-04 GCAATTGCAA TATACAAA ATTGCACTCA chrX:635385-635505 111 1.01e-04 CGATCGGGAA TATACAAA AA chr3R:5321684-5321804 98 1.23e-04 TTGAGCTATT TATAAAAA ACATAAACAA chr2L:10211152-10211272 75 1.23e-04 CTGAAACTTT TATAAAAA ATTCTCCGGG chr2L:12505170-12505290 1 1.42e-04 . TATACATA AATATAGAAT chr3L:9501578-9501698 23 1.42e-04 TCCCGACTAA Tatacata catagataca chrX:6600833-6600953 18 1.42e-04 tataagtaca tatacata cataTGTTTC chr4:572493-572613 105 1.83e-04 GTAGTCAACA TATAAATA TTGTTGAT chr3L:13520040-13520160 14 1.83e-04 GATCAGGGTG AAAACAAA TTGCTTTCGT chr3R:31987953-31988073 21 1.83e-04 tGTGGAGATT TATAAATA GATTGTACAA chrX:10803346-10803466 80 1.83e-04 CTTGTCGGGA AAAACAAA CACACACATT chr2L:839384-839504 90 1.83e-04 gcaagtggca aaaacaaa gaccgtggca chr3R:24812565-24812685 66 1.83e-04 CCAACATTTC TATAAATA GTAGCTCGAG chr2R:16339101-16339221 105 1.83e-04 TTGTAAGCAT TATAAATA CGCCGTGA chr3L:587936-588056 64 1.83e-04 GCCAGGCGTC TATAAATA CCTGATGCCT chr3R:26862345-26862465 79 1.83e-04 GTGCGCAGTG AAAACAAA CAAACACCCC chr3L:12892565-12892685 61 1.83e-04 GAACTGAGAA TATAAATA AAAACACCTG chr2R:20939071-20939191 73 1.83e-04 GGGGCAGCTC TATAAATA GGATTTGTCA chr2L:11875087-11875207 107 1.83e-04 CTCGGGAGTC AAAACAAA ATGAAT chr2R:9579825-9579945 66 1.83e-04 GTGCACGATC TATAAATA CCCAGCCGCA chr3L:2906535-2906655 69 1.83e-04 CCCAAAGGCC TATAAATA GCGATTGTTT chr3R:16218806-16218926 84 2.04e-04 CGACAGCGCG AAAAAAAA TATCGAGACC chr2R:15891533-15891653 50 2.04e-04 TTTCAATGAA AAAAAAAA AGAAAACCAT chr3R:29215710-29215830 60 2.04e-04 ATCTTTGAAA AAAAAAAA GAGACGCAAG chr3R:29510811-29510931 109 2.04e-04 TACGCCCCAA AAAAAAAA AAAG chr2R:22544154-22544274 67 2.04e-04 GCTTCCCAAA AAAAAAAA ATGCAGCCAC chrX:4280875-4280995 59 2.24e-04 CAGGATGGGC AAAACATA AACAAGCGAC chr2L:3524543-3524663 100 2.45e-04 TGACAGCTga aaaaaata gagaaagaaa chr3R:9393158-9393278 113 2.45e-04 TTCTTTTTAC AAAAAATA chr3R:6683780-6683900 80 2.45e-04 GGTCAGCAAG AAAAAATA TTCTTGCATA chr2R:10124789-10124909 99 2.64e-04 catcaacaac aataCAAA GCCCTTTCAA chr3L:10290546-10290666 107 2.64e-04 gaaaaaagaa aatacaaa caagaa chr3L:19913447-19913567 4 2.64e-04 TGA AATACAAA TAAGGATGTG chr3L:2765157-2765277 113 2.85e-04 AGATaaaata aataaaaa chr2R:16143073-16143193 16 3.26e-04 CAAGCCATTC AATACATA GCCAGTGTGG chr2L:5560088-5560208 46 3.26e-04 ATTTTTGCAG TAAATAAA GCGTCCGGTG chr2R:6735193-6735313 106 3.26e-04 TGGTAAAGGA AATACATA TGTACAT chr2R:8861165-8861285 101 3.69e-04 ATACACCGGC TAAATATA AGTGCGACGA chr2L:20098334-20098454 46 4.08e-04 TTGGGGTGGG CAAACAAA AGCTGGTGGC chr3R:11449543-11449663 64 4.08e-04 ATAaacagca caaacaaa aagaacaaca chr3L:2256913-2257033 62 4.08e-04 AGCACACATG CAAACAAA CTTTCGGGCT chr2R:18664330-18664450 26 4.08e-04 TGGACCAGAA CAAACAAA CGAGGCAAGA chr3R:26919844-26919964 76 4.28e-04 TAATTTGACA CAAAAAAA CAACAGAAAT chr2R:22927386-22927506 84 4.67e-04 AACTCGAGTG TATATATA GATCGCTCAA chr3L:8747512-8747632 32 4.67e-04 GCTATGCAGC TATATATA GATCGACTTC chr3L:14664492-14664612 98 4.67e-04 CCCTGATCTA TATATATA GATATATGAT chrX:8576820-8576940 2 4.67e-04 a tatatata tTCGGCGCCG chr3R:19486140-19486260 100 5.08e-04 AGAAGCCCCA AAAATAAA CACGACTGAC chr3L:16910290-16910410 91 5.08e-04 CAAGAATGCG AAAATAAA TTCCATATAT chr3R:21273164-21273284 21 5.85e-04 TATGTACATG CATACATA TATCAAAACA chr3L:20932510-20932630 59 6.67e-04 CCACAAGTAG CAAATAAA TGAAATTGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAWAMAWA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:20542802-20542922 1.9e-05 7_[+3]_105 chrX:9208669-9208789 1.9e-05 16_[+3]_96 chr2L:9558126-9558246 1.9e-05 37_[+3]_75 chr2R:9937417-9937537 1.9e-05 104_[+3]_8 chr3R:14108246-14108366 1.9e-05 7_[+3]_105 chr3R:29146874-29146994 1.9e-05 31_[+3]_81 chr3L:2458920-2459040 1.9e-05 28_[+3]_84 chr3L:5666926-5667046 1.9e-05 109_[+3]_3 chrX:16571000-16571120 4.1e-05 64_[+3]_48 chr3R:19002538-19002658 4.1e-05 11_[+3]_101 chr3L:16854222-16854342 4.1e-05 77_[+3]_35 chrX:7617520-7617640 4.1e-05 112_[+3] chr3L:15726752-15726872 6e-05 13_[+3]_99 chr3R:17777097-17777217 8.2e-05 20_[+3]_92 chr3L:3961157-3961277 8.2e-05 29_[+3]_83 chr3R:9130306-9130426 8.2e-05 11_[+3]_101 chr2L:6701939-6702059 8.2e-05 88_[+3]_24 chr2L:17227309-17227429 8.2e-05 28_[+3]_84 chr3R:16737415-16737535 8.2e-05 74_[+3]_38 chr3L:3178011-3178131 8.2e-05 52_[+3]_60 chr2L:9167268-9167388 0.0001 86_[+3]_26 chr2R:15989802-15989922 0.0001 26_[+3]_86 chrX:635385-635505 0.0001 110_[+3]_2 chr3R:5321684-5321804 0.00012 97_[+3]_15 chr2L:10211152-10211272 0.00012 74_[+3]_38 chr2L:12505170-12505290 0.00014 [+3]_112 chr3L:9501578-9501698 0.00014 22_[+3]_90 chrX:6600833-6600953 0.00014 17_[+3]_95 chr4:572493-572613 0.00018 104_[+3]_8 chr3L:13520040-13520160 0.00018 13_[+3]_99 chr3R:31987953-31988073 0.00018 20_[+3]_92 chrX:10803346-10803466 0.00018 79_[+3]_33 chr2L:839384-839504 0.00018 89_[+3]_23 chr3R:24812565-24812685 0.00018 65_[+3]_47 chr2R:16339101-16339221 0.00018 104_[+3]_8 chr3L:587936-588056 0.00018 63_[+3]_49 chr3R:26862345-26862465 0.00018 78_[+3]_34 chr3L:12892565-12892685 0.00018 60_[+3]_52 chr2R:20939071-20939191 0.00018 72_[+3]_40 chr2L:11875087-11875207 0.00018 106_[+3]_6 chr2R:9579825-9579945 0.00018 65_[+3]_47 chr3L:2906535-2906655 0.00018 68_[+3]_44 chr3R:16218806-16218926 0.0002 83_[+3]_29 chr2R:15891533-15891653 0.0002 49_[+3]_63 chr3R:29215710-29215830 0.0002 59_[+3]_53 chr3R:29510811-29510931 0.0002 108_[+3]_4 chr2R:22544154-22544274 0.0002 66_[+3]_46 chrX:4280875-4280995 0.00022 58_[+3]_54 chr2L:3524543-3524663 0.00024 99_[+3]_13 chr3R:9393158-9393278 0.00024 112_[+3] chr3R:6683780-6683900 0.00024 79_[+3]_33 chr2R:10124789-10124909 0.00026 98_[+3]_14 chr3L:10290546-10290666 0.00026 106_[+3]_6 chr3L:19913447-19913567 0.00026 3_[+3]_109 chr3L:2765157-2765277 0.00029 112_[+3] chr2R:16143073-16143193 0.00033 15_[+3]_97 chr2L:5560088-5560208 0.00033 45_[+3]_67 chr2R:6735193-6735313 0.00033 105_[+3]_7 chr2R:8861165-8861285 0.00037 100_[+3]_12 chr2L:20098334-20098454 0.00041 45_[+3]_67 chr3R:11449543-11449663 0.00041 63_[+3]_49 chr3L:2256913-2257033 0.00041 61_[+3]_51 chr2R:18664330-18664450 0.00041 25_[+3]_87 chr3R:26919844-26919964 0.00043 75_[+3]_37 chr2R:22927386-22927506 0.00047 83_[+3]_29 chr3L:8747512-8747632 0.00047 31_[+3]_81 chr3L:14664492-14664612 0.00047 97_[+3]_15 chrX:8576820-8576940 0.00047 1_[+3]_111 chr3R:19486140-19486260 0.00051 99_[+3]_13 chr3L:16910290-16910410 0.00051 90_[+3]_22 chr3R:21273164-21273284 0.00058 20_[+3]_92 chr3L:20932510-20932630 0.00067 58_[+3]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAWAMAWA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WAWAMAWA width=8 seqs=72 chr3R:20542802-20542922 ( 8) TAAACAAA 1 chrX:9208669-9208789 ( 17) TAAACAAA 1 chr2L:9558126-9558246 ( 38) TAAACAAA 1 chr2R:9937417-9937537 ( 105) TAAACAAA 1 chr3R:14108246-14108366 ( 8) TAAACAAA 1 chr3R:29146874-29146994 ( 32) TAAACAAA 1 chr3L:2458920-2459040 ( 29) TAAACAAA 1 chr3L:5666926-5667046 ( 110) TAAACAAA 1 chrX:16571000-16571120 ( 65) TAAAAAAA 1 chr3R:19002538-19002658 ( 12) TAAAAAAA 1 chr3L:16854222-16854342 ( 78) TAAAAAAA 1 chrX:7617520-7617640 ( 113) TAAAAAAA 1 chr3L:15726752-15726872 ( 14) TAAACATA 1 chr3R:17777097-17777217 ( 21) TAAAAATA 1 chr3L:3961157-3961277 ( 30) TAAAAATA 1 chr3R:9130306-9130426 ( 12) TAAAAATA 1 chr2L:6701939-6702059 ( 89) TAAAAATA 1 chr2L:17227309-17227429 ( 29) TAAAAATA 1 chr3R:16737415-16737535 ( 75) TAAAAATA 1 chr3L:3178011-3178131 ( 53) TAAAAATA 1 chr2L:9167268-9167388 ( 87) TATACAAA 1 chr2R:15989802-15989922 ( 27) TATACAAA 1 chrX:635385-635505 ( 111) TATACAAA 1 chr3R:5321684-5321804 ( 98) TATAAAAA 1 chr2L:10211152-10211272 ( 75) TATAAAAA 1 chr2L:12505170-12505290 ( 1) TATACATA 1 chr3L:9501578-9501698 ( 23) TATACATA 1 chrX:6600833-6600953 ( 18) TATACATA 1 chr4:572493-572613 ( 105) TATAAATA 1 chr3L:13520040-13520160 ( 14) AAAACAAA 1 chr3R:31987953-31988073 ( 21) TATAAATA 1 chrX:10803346-10803466 ( 80) AAAACAAA 1 chr2L:839384-839504 ( 90) AAAACAAA 1 chr3R:24812565-24812685 ( 66) TATAAATA 1 chr2R:16339101-16339221 ( 105) TATAAATA 1 chr3L:587936-588056 ( 64) TATAAATA 1 chr3R:26862345-26862465 ( 79) AAAACAAA 1 chr3L:12892565-12892685 ( 61) TATAAATA 1 chr2R:20939071-20939191 ( 73) TATAAATA 1 chr2L:11875087-11875207 ( 107) AAAACAAA 1 chr2R:9579825-9579945 ( 66) TATAAATA 1 chr3L:2906535-2906655 ( 69) TATAAATA 1 chr3R:16218806-16218926 ( 84) AAAAAAAA 1 chr2R:15891533-15891653 ( 50) AAAAAAAA 1 chr3R:29215710-29215830 ( 60) AAAAAAAA 1 chr3R:29510811-29510931 ( 109) AAAAAAAA 1 chr2R:22544154-22544274 ( 67) AAAAAAAA 1 chrX:4280875-4280995 ( 59) AAAACATA 1 chr2L:3524543-3524663 ( 100) AAAAAATA 1 chr3R:9393158-9393278 ( 113) AAAAAATA 1 chr3R:6683780-6683900 ( 80) AAAAAATA 1 chr2R:10124789-10124909 ( 99) AATACAAA 1 chr3L:10290546-10290666 ( 107) AATACAAA 1 chr3L:19913447-19913567 ( 4) AATACAAA 1 chr3L:2765157-2765277 ( 113) AATAAAAA 1 chr2R:16143073-16143193 ( 16) AATACATA 1 chr2L:5560088-5560208 ( 46) TAAATAAA 1 chr2R:6735193-6735313 ( 106) AATACATA 1 chr2R:8861165-8861285 ( 101) TAAATATA 1 chr2L:20098334-20098454 ( 46) CAAACAAA 1 chr3R:11449543-11449663 ( 64) CAAACAAA 1 chr3L:2256913-2257033 ( 62) CAAACAAA 1 chr2R:18664330-18664450 ( 26) CAAACAAA 1 chr3R:26919844-26919964 ( 76) CAAAAAAA 1 chr2R:22927386-22927506 ( 84) TATATATA 1 chr3L:8747512-8747632 ( 32) TATATATA 1 chr3L:14664492-14664612 ( 98) TATATATA 1 chrX:8576820-8576940 ( 2) TATATATA 1 chr3R:19486140-19486260 ( 100) AAAATAAA 1 chr3L:16910290-16910410 ( 91) AAAATAAA 1 chr3R:21273164-21273284 ( 21) CATACATA 1 chr3L:20932510-20932630 ( 59) CAAATAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAWAMAWA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.46199 E= 1.7e-005 23 -130 -1281 118 194 -1281 -1281 -1281 123 -1281 -1281 56 194 -1281 -1281 -1281 77 85 -1281 -107 194 -1281 -1281 -1281 110 -1281 -1281 76 194 -1281 -1281 -1281 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAWAMAWA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 1.7e-005 0.305556 0.097222 0.000000 0.597222 1.000000 0.000000 0.000000 0.000000 0.611111 0.000000 0.000000 0.388889 1.000000 0.000000 0.000000 0.000000 0.444444 0.430556 0.000000 0.125000 1.000000 0.000000 0.000000 0.000000 0.555556 0.000000 0.000000 0.444444 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WAWAMAWA MEME-3 regular expression -------------------------------------------------------------------------------- [TA]A[AT]A[AC]A[AT]A -------------------------------------------------------------------------------- Time 20.73 secs. ******************************************************************************** ******************************************************************************** MOTIF TTKTTTTT MEME-4 width = 8 sites = 83 llr = 597 E-value = 2.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTKTTTTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::1:::2: pos.-specific C ::::1::1 probability G ::6::3:1 matrix T aa3a9787 bits 2.1 1.9 ** 1.7 ** * 1.4 ** * Relative 1.2 ** ** * Entropy 1.0 ** **** (10.4 bits) 0.8 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTGTTTTT consensus T GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTTTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5321684-5321804 58 2.07e-05 TAATTATACC TTGTTTTT GCCTGCTCAT chr3R:9886578-9886698 94 2.07e-05 tattattatt ttgttttt tttttGTCGG chr3L:13520040-13520160 102 2.07e-05 CAGCAACCCC TTGTTTTT TATAGCTCTC chr3R:9393158-9393278 97 2.07e-05 ACGAGCACTT TTGTTTTT CTTTTTACAA chr3L:349811-349931 24 2.07e-05 ATCCAATTGT TTGTTTTT AATAATATTC chr2L:8239397-8239517 102 2.07e-05 gtatctgtgt ttgttttt TACTTTTGCG chr3R:9756432-9756552 77 2.07e-05 TTTCTTGGAT TTGTTTTT GTTGTGCTTG chrX:7959022-7959142 79 2.07e-05 TGGCCTGTTT TTGTTTTT TTATCACAGG chr3R:16277668-16277788 28 6.23e-05 TCGCTTCGTT TTTTTTTT ATATATTTTG chr2L:5490026-5490146 2 6.23e-05 a tttttttt CCTTTAGCTG chrX:3136528-3136648 21 6.23e-05 CAGGTGGTCG TTTTTTTT TCctctctct chr3R:22233276-22233396 23 6.23e-05 CGGGGATTCC TTTTTTTT ATGGTAGGGG chr2R:14962179-14962299 74 6.23e-05 CCACAGGTAG TTGTTGTT GCTTGCGCTG chrX:10803346-10803466 31 6.23e-05 ATGTGAGTAG TTGTTGTT CTATTTTCAT chrX:19765887-19766007 10 6.23e-05 TTTTTTTCC TTTTTTTT CGAGCCCGGA chr3L:3805849-3805969 39 6.23e-05 gttgcggctg ttgttgtt gttgttCGCC chr2R:21367036-21367156 63 6.23e-05 ACCTACAACT TTGTTGTT CATATTAAAT chr2L:11875087-11875207 28 6.23e-05 TTTGGTTTTT TTGTTGTT TACAGAGGGG chr3R:31987953-31988073 85 8.31e-05 AACTAGAATA TTTTTGTT GTGCACACAT chr2L:6941855-6941975 38 8.31e-05 TTGCGCATGT TTTTTGTT CTTTTGGCGA chr2L:5560088-5560208 106 8.31e-05 ATCGACGCGT TTTTTGTT TGCGTTG chr2R:15675339-15675459 90 8.31e-05 gctctTTTGA TTTTTGTT GGATGCCACA chrX:6600833-6600953 85 8.31e-05 ATTTCGGCAC TTTTTGTT GCACTTTGCC chr2L:17227309-17227429 4 8.31e-05 GAT TTTTTGTT GTCTGCCCTC chr3L:6698124-6698244 76 8.31e-05 TCCTCATGCA TTTTTGTT TACATCACTT chr2L:2733131-2733251 18 1.04e-04 ACGATTTGTT TTGTTTAT GCAAGACCAA chrX:9208669-9208789 26 1.04e-04 ATAAACAAAA TTGTTTAT GGCCATGCTT chr2L:6701939-6702059 74 1.04e-04 CAGTCGGTGG TTGTTTAT TTACGTTTAA chr3L:8814064-8814184 89 1.04e-04 GCCCATTAGT TTGTTTAT CCATTAATTT chr2R:10315815-10315935 75 1.04e-04 CCATTCCGGG TTGTTTAT TCAGATTGCC chr3L:6331421-6331541 81 1.04e-04 CAGGTGGTTG TTGTTTAT GTTGCTGCTG chr3R:24877171-24877291 1 1.26e-04 . TTATTTTT TAGCAAATAA chr3L:15726752-15726872 26 1.26e-04 AACATATGAT TTATTTTT GGGATTGGGA chr3R:30059995-30060115 74 1.26e-04 TGAATGCGAT TTATTTTT AGACGAGTGC chr3L:2114861-2114981 8 1.26e-04 TAGCTTC TTATTTTT CACGGGGCTA chr2L:16798850-16798970 89 1.26e-04 GCGAATAATT TTATTTTT AGAGGCCTCC chr3L:478747-478867 4 1.64e-04 AAA TTGTTTTC TGTGTTTATG chrX:16793306-16793426 110 1.64e-04 GCTTTCGTCA TTGTTTTC GGC chr3L:3165507-3165627 95 1.64e-04 CCTGTTGCTC TTGTTTTG CCACGCCCCC chr3R:12007333-12007453 12 1.64e-04 CAAATTGATT TTGTTTTG GTTTGGTTTC chr2R:17726432-17726552 27 1.64e-04 CAACAGGCTG TTGTTTTG GTATTTTCCG chr3R:27926727-27926847 8 1.64e-04 TTATGTT TTGTTTTG GTTTCGAGCG chr3R:5523516-5523636 104 1.64e-04 GTCTGCCGCG TTGTTTTC GCATTTCCC chr3L:2906535-2906655 81 1.64e-04 TAAATAGCGA TTGTTTTC AATGAGATTC chr4:572493-572613 113 2.05e-04 CATATAAATA TTGTTGAT chr2R:15891533-15891653 32 2.05e-04 TTAGCTCGTC TTTTTTAT TTTCAATGAA chr3R:13401395-13401515 92 2.05e-04 TTTTATGGAT TTTTTTAT TTTGCATTTT chr3R:31610539-31610659 64 2.05e-04 TCAACGGCAA TTTTTTAT GAATGAATTT chr2R:14001823-14001943 29 3.20e-04 GAAATTGCTT TTGTTGTG TACACAAGAC chr3L:8411428-8411548 10 3.20e-04 CTGATCTCA TTGTCTTT GCTATTGGGA chr3L:8849660-8849780 79 3.20e-04 GATGCGTTAT TTGTCTTT CGACACGGCG chr3R:21775966-21776086 79 3.20e-04 ACTCCGGCAA TTGTTGTG CCCGTTGCCA chr2R:9937417-9937537 61 3.20e-04 TGGCGACCTG TTGTTGTC TCTGATCGGC chr3L:3961157-3961277 76 3.20e-04 CCTGTTCACA TTGTTGTG ACGCAACTTT chr3L:20932510-20932630 32 3.20e-04 ATAATTGGGA TTGTTGTG GTGGTTCTGC chr3L:12398883-12399003 109 3.20e-04 TTGCTCCTCG TTTTTTTC CGTA chr3L:16178627-16178747 109 3.59e-04 gtgtttgcgt ttgtgttt gtgC chr3L:5754970-5755090 48 3.59e-04 GCAATGCGGT TTGTGTTT GGACCATCCA chr3L:9433390-9433510 100 4.76e-04 TTCCCTCGGC TTTTCTTT ATAGTTTCTG chr2R:9388322-9388442 90 4.76e-04 CCTTAGTCTG TTATTTAT ACGCTGTTGC chr3R:28628301-28628421 29 4.76e-04 CCCCATGGAA TTTTCTTT CTGGCAGAAC chr2R:14352500-14352620 75 4.76e-04 TTTGATATCA TTTTTGTG CGCGCAACGC chr3R:24812565-24812685 101 4.76e-04 ctttcacttg ttgctttt gcttatgttg chr2L:10211152-10211272 47 4.76e-04 CGCACGCCTG TTGCTTTT CTTCTTTCGT chr3R:14108246-14108366 36 4.76e-04 ATTTCAGCGA TTTTCTTT TCCAATTCGA chr3L:586920-587040 85 4.76e-04 TGCGGCCCAT TTATTTAT GTGCCCCACC chr2R:9207778-9207898 53 4.76e-04 AACGCCCGTC TTTTTGTG GGGAGCCAAC chr2R:8121567-8121687 30 4.76e-04 CATTGTACTA TTTTTGTG GAATCGTGGA chr2L:9551083-9551203 29 4.76e-04 CCGAGAGGAT TTATTTAT TGCCATGTCG chr2R:20231652-20231772 21 4.76e-04 GTTCTAGTGT TTATTTAT AATTTACACC chrX:1754302-1754422 43 5.13e-04 AGCAGCCGGC TTGTTTAC GTTTTTAGCC chr3L:12519004-12519124 108 5.13e-04 TGCAACATGT TTGTTTAC ATGTG chr2L:10222971-10223091 42 5.13e-04 AGATGTACCA TTGTTTAC AGGAGGAACC chr2R:6735193-6735313 42 5.13e-04 TTTACACAAT TTGTTTAC AACATCCCTA chr3R:30545077-30545197 48 5.54e-04 AATTTGGCAT TTATTTTC ATTTTTCGGC chr3R:6481872-6481992 108 5.91e-04 TGCTTGTGCA TTTTGTTT ACTCG chr3R:14599236-14599356 12 6.68e-04 AATTTTAATA TTTTCGTT GAAAAATTAC chr3L:6731196-6731316 49 6.68e-04 cctgttgatg ttgctgtt gctgctgctg chr3L:2256913-2257033 19 6.68e-04 TTCCACGAGC TTTTCGTT GGAAGCTCAG chr3R:26992336-26992456 9 6.68e-04 TATGGCTT TTGCTGTT CGTGGCACTT chrX:16104503-16104623 56 7.80e-04 CGAACCACCA CTGTTTTT ATGTTTCTCT chr2R:20939071-20939191 11 7.80e-04 GGGTTCGCTG CTGTTTTT GGAGCAGACC chr3L:16475645-16475765 101 8.91e-04 TTCGTGGGTT TTTTGGTT CCCATGAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTTTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5321684-5321804 2.1e-05 57_[+4]_55 chr3R:9886578-9886698 2.1e-05 93_[+4]_19 chr3L:13520040-13520160 2.1e-05 101_[+4]_11 chr3R:9393158-9393278 2.1e-05 96_[+4]_16 chr3L:349811-349931 2.1e-05 23_[+4]_89 chr2L:8239397-8239517 2.1e-05 101_[+4]_11 chr3R:9756432-9756552 2.1e-05 76_[+4]_36 chrX:7959022-7959142 2.1e-05 78_[+4]_34 chr3R:16277668-16277788 6.2e-05 27_[+4]_85 chr2L:5490026-5490146 6.2e-05 1_[+4]_111 chrX:3136528-3136648 6.2e-05 20_[+4]_92 chr3R:22233276-22233396 6.2e-05 22_[+4]_90 chr2R:14962179-14962299 6.2e-05 73_[+4]_39 chrX:10803346-10803466 6.2e-05 30_[+4]_82 chrX:19765887-19766007 6.2e-05 9_[+4]_103 chr3L:3805849-3805969 6.2e-05 38_[+4]_74 chr2R:21367036-21367156 6.2e-05 62_[+4]_50 chr2L:11875087-11875207 6.2e-05 27_[+4]_85 chr3R:31987953-31988073 8.3e-05 84_[+4]_28 chr2L:6941855-6941975 8.3e-05 37_[+4]_75 chr2L:5560088-5560208 8.3e-05 105_[+4]_7 chr2R:15675339-15675459 8.3e-05 89_[+4]_23 chrX:6600833-6600953 8.3e-05 84_[+4]_28 chr2L:17227309-17227429 8.3e-05 3_[+4]_109 chr3L:6698124-6698244 8.3e-05 75_[+4]_37 chr2L:2733131-2733251 0.0001 17_[+4]_95 chrX:9208669-9208789 0.0001 25_[+4]_87 chr2L:6701939-6702059 0.0001 73_[+4]_39 chr3L:8814064-8814184 0.0001 88_[+4]_24 chr2R:10315815-10315935 0.0001 74_[+4]_38 chr3L:6331421-6331541 0.0001 80_[+4]_32 chr3R:24877171-24877291 0.00013 [+4]_112 chr3L:15726752-15726872 0.00013 25_[+4]_87 chr3R:30059995-30060115 0.00013 73_[+4]_39 chr3L:2114861-2114981 0.00013 7_[+4]_105 chr2L:16798850-16798970 0.00013 88_[+4]_24 chr3L:478747-478867 0.00016 3_[+4]_109 chrX:16793306-16793426 0.00016 109_[+4]_3 chr3L:3165507-3165627 0.00016 94_[+4]_18 chr3R:12007333-12007453 0.00016 11_[+4]_101 chr2R:17726432-17726552 0.00016 26_[+4]_86 chr3R:27926727-27926847 0.00016 7_[+4]_105 chr3R:5523516-5523636 0.00016 103_[+4]_9 chr3L:2906535-2906655 0.00016 80_[+4]_32 chr4:572493-572613 0.0002 112_[+4] chr2R:15891533-15891653 0.0002 31_[+4]_81 chr3R:13401395-13401515 0.0002 91_[+4]_21 chr3R:31610539-31610659 0.0002 63_[+4]_49 chr2R:14001823-14001943 0.00032 28_[+4]_84 chr3L:8411428-8411548 0.00032 9_[+4]_103 chr3L:8849660-8849780 0.00032 78_[+4]_34 chr3R:21775966-21776086 0.00032 78_[+4]_34 chr2R:9937417-9937537 0.00032 60_[+4]_52 chr3L:3961157-3961277 0.00032 75_[+4]_37 chr3L:20932510-20932630 0.00032 31_[+4]_81 chr3L:12398883-12399003 0.00032 108_[+4]_4 chr3L:16178627-16178747 0.00036 108_[+4]_4 chr3L:5754970-5755090 0.00036 47_[+4]_65 chr3L:9433390-9433510 0.00048 99_[+4]_13 chr2R:9388322-9388442 0.00048 89_[+4]_23 chr3R:28628301-28628421 0.00048 28_[+4]_84 chr2R:14352500-14352620 0.00048 74_[+4]_38 chr3R:24812565-24812685 0.00048 100_[+4]_12 chr2L:10211152-10211272 0.00048 46_[+4]_66 chr3R:14108246-14108366 0.00048 35_[+4]_77 chr3L:586920-587040 0.00048 84_[+4]_28 chr2R:9207778-9207898 0.00048 52_[+4]_60 chr2R:8121567-8121687 0.00048 29_[+4]_83 chr2L:9551083-9551203 0.00048 28_[+4]_84 chr2R:20231652-20231772 0.00048 20_[+4]_92 chrX:1754302-1754422 0.00051 42_[+4]_70 chr3L:12519004-12519124 0.00051 107_[+4]_5 chr2L:10222971-10223091 0.00051 41_[+4]_71 chr2R:6735193-6735313 0.00051 41_[+4]_71 chr3R:30545077-30545197 0.00055 47_[+4]_65 chr3R:6481872-6481992 0.00059 107_[+4]_5 chr3R:14599236-14599356 0.00067 11_[+4]_101 chr3L:6731196-6731316 0.00067 48_[+4]_64 chr3L:2256913-2257033 0.00067 18_[+4]_94 chr3R:26992336-26992456 0.00067 8_[+4]_104 chrX:16104503-16104623 0.00078 55_[+4]_57 chr2R:20939071-20939191 0.00078 10_[+4]_102 chr3L:16475645-16475765 0.00089 100_[+4]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTTTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTKTTTTT width=8 seqs=83 chr3R:5321684-5321804 ( 58) TTGTTTTT 1 chr3R:9886578-9886698 ( 94) TTGTTTTT 1 chr3L:13520040-13520160 ( 102) TTGTTTTT 1 chr3R:9393158-9393278 ( 97) TTGTTTTT 1 chr3L:349811-349931 ( 24) TTGTTTTT 1 chr2L:8239397-8239517 ( 102) TTGTTTTT 1 chr3R:9756432-9756552 ( 77) TTGTTTTT 1 chrX:7959022-7959142 ( 79) TTGTTTTT 1 chr3R:16277668-16277788 ( 28) TTTTTTTT 1 chr2L:5490026-5490146 ( 2) TTTTTTTT 1 chrX:3136528-3136648 ( 21) TTTTTTTT 1 chr3R:22233276-22233396 ( 23) TTTTTTTT 1 chr2R:14962179-14962299 ( 74) TTGTTGTT 1 chrX:10803346-10803466 ( 31) TTGTTGTT 1 chrX:19765887-19766007 ( 10) TTTTTTTT 1 chr3L:3805849-3805969 ( 39) TTGTTGTT 1 chr2R:21367036-21367156 ( 63) TTGTTGTT 1 chr2L:11875087-11875207 ( 28) TTGTTGTT 1 chr3R:31987953-31988073 ( 85) TTTTTGTT 1 chr2L:6941855-6941975 ( 38) TTTTTGTT 1 chr2L:5560088-5560208 ( 106) TTTTTGTT 1 chr2R:15675339-15675459 ( 90) TTTTTGTT 1 chrX:6600833-6600953 ( 85) TTTTTGTT 1 chr2L:17227309-17227429 ( 4) TTTTTGTT 1 chr3L:6698124-6698244 ( 76) TTTTTGTT 1 chr2L:2733131-2733251 ( 18) TTGTTTAT 1 chrX:9208669-9208789 ( 26) TTGTTTAT 1 chr2L:6701939-6702059 ( 74) TTGTTTAT 1 chr3L:8814064-8814184 ( 89) TTGTTTAT 1 chr2R:10315815-10315935 ( 75) TTGTTTAT 1 chr3L:6331421-6331541 ( 81) TTGTTTAT 1 chr3R:24877171-24877291 ( 1) TTATTTTT 1 chr3L:15726752-15726872 ( 26) TTATTTTT 1 chr3R:30059995-30060115 ( 74) TTATTTTT 1 chr3L:2114861-2114981 ( 8) TTATTTTT 1 chr2L:16798850-16798970 ( 89) TTATTTTT 1 chr3L:478747-478867 ( 4) TTGTTTTC 1 chrX:16793306-16793426 ( 110) TTGTTTTC 1 chr3L:3165507-3165627 ( 95) TTGTTTTG 1 chr3R:12007333-12007453 ( 12) TTGTTTTG 1 chr2R:17726432-17726552 ( 27) TTGTTTTG 1 chr3R:27926727-27926847 ( 8) TTGTTTTG 1 chr3R:5523516-5523636 ( 104) TTGTTTTC 1 chr3L:2906535-2906655 ( 81) TTGTTTTC 1 chr4:572493-572613 ( 113) TTGTTGAT 1 chr2R:15891533-15891653 ( 32) TTTTTTAT 1 chr3R:13401395-13401515 ( 92) TTTTTTAT 1 chr3R:31610539-31610659 ( 64) TTTTTTAT 1 chr2R:14001823-14001943 ( 29) TTGTTGTG 1 chr3L:8411428-8411548 ( 10) TTGTCTTT 1 chr3L:8849660-8849780 ( 79) TTGTCTTT 1 chr3R:21775966-21776086 ( 79) TTGTTGTG 1 chr2R:9937417-9937537 ( 61) TTGTTGTC 1 chr3L:3961157-3961277 ( 76) TTGTTGTG 1 chr3L:20932510-20932630 ( 32) TTGTTGTG 1 chr3L:12398883-12399003 ( 109) TTTTTTTC 1 chr3L:16178627-16178747 ( 109) TTGTGTTT 1 chr3L:5754970-5755090 ( 48) TTGTGTTT 1 chr3L:9433390-9433510 ( 100) TTTTCTTT 1 chr2R:9388322-9388442 ( 90) TTATTTAT 1 chr3R:28628301-28628421 ( 29) TTTTCTTT 1 chr2R:14352500-14352620 ( 75) TTTTTGTG 1 chr3R:24812565-24812685 ( 101) TTGCTTTT 1 chr2L:10211152-10211272 ( 47) TTGCTTTT 1 chr3R:14108246-14108366 ( 36) TTTTCTTT 1 chr3L:586920-587040 ( 85) TTATTTAT 1 chr2R:9207778-9207898 ( 53) TTTTTGTG 1 chr2R:8121567-8121687 ( 30) TTTTTGTG 1 chr2L:9551083-9551203 ( 29) TTATTTAT 1 chr2R:20231652-20231772 ( 21) TTATTTAT 1 chrX:1754302-1754422 ( 43) TTGTTTAC 1 chr3L:12519004-12519124 ( 108) TTGTTTAC 1 chr2L:10222971-10223091 ( 42) TTGTTTAC 1 chr2R:6735193-6735313 ( 42) TTGTTTAC 1 chr3R:30545077-30545197 ( 48) TTATTTTC 1 chr3R:6481872-6481992 ( 108) TTTTGTTT 1 chr3R:14599236-14599356 ( 12) TTTTCGTT 1 chr3L:6731196-6731316 ( 49) TTGCTGTT 1 chr3L:2256913-2257033 ( 19) TTTTCGTT 1 chr3R:26992336-26992456 ( 9) TTGCTGTT 1 chrX:16104503-16104623 ( 56) CTGTTTTT 1 chr2R:20939071-20939191 ( 11) CTGTTTTT 1 chr3L:16475645-16475765 ( 101) TTTTGGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTTTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.38464 E= 2.0e+000 -1302 -331 -1302 189 -1302 -1302 -1302 193 -111 -1302 125 25 -1302 -231 -1302 186 -1302 -150 -231 172 -1302 -1302 39 138 -26 -1302 -1302 157 -1302 -85 -85 148 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTTTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 2.0e+000 0.000000 0.024096 0.000000 0.975904 0.000000 0.000000 0.000000 1.000000 0.120482 0.000000 0.566265 0.313253 0.000000 0.048193 0.000000 0.951807 0.000000 0.084337 0.048193 0.867470 0.000000 0.000000 0.313253 0.686747 0.216867 0.000000 0.000000 0.783133 0.000000 0.132530 0.132530 0.734940 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKTTTTT MEME-4 regular expression -------------------------------------------------------------------------------- TT[GT]TT[TG][TA]T -------------------------------------------------------------------------------- Time 26.46 secs. ******************************************************************************** ******************************************************************************** MOTIF CARCMGCA MEME-5 width = 8 sites = 29 llr = 256 E-value = 3.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CARCMGCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a4:72:a pos.-specific C a::83:a: probability G ::62:8:: matrix T :::::::: bits 2.1 * * 1.9 ** ** 1.7 ** ** 1.4 ** ** Relative 1.2 ** * *** Entropy 1.0 ******** (12.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCAGCA consensus AGCA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCMGCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10124789-10124909 50 1.36e-05 agtgcagcag cagcagca gtagcagcga chr3L:9501578-9501698 5 1.36e-05 TATT CAGCAGCA TCCCGACTAA chrX:1754302-1754422 91 1.36e-05 CGTGGTCGGT CAGCAGCA GCCACGTGTT chr2L:308329-308449 71 1.36e-05 ACAACAATGC CAGCAGCA CCACCCACTC chrX:19243723-19243843 41 1.36e-05 CGGCAAGCTG CAGCAGCA GTTCCTCTGT chr2R:20063751-20063871 82 1.36e-05 GTTGCTGTTG CAGCAGCA ACATCAGGCG chr2R:21047424-21047544 21 1.36e-05 GAGACCTTGG CAGCAGCA TCTTCCCCAT chr2L:1646146-1646266 62 1.36e-05 TGGTTGCACA CAGCAGCA GACATATCGC chr3L:16178627-16178747 28 4.09e-05 CCGacaacaa cagccgca acaacaacaa chr2L:3000789-3000909 13 4.09e-05 gttgcaatag caacagca acaaccacgc chr3R:11449543-11449663 77 4.09e-05 acaaaaagaa caacagca acaacaGCGT chr2L:5490026-5490146 20 4.09e-05 CCTTTAGCTG CAGCCGCA TTTAACTCGT chrX:7959022-7959142 110 4.09e-05 GACAAAACAA CAACAGCA CAA chr2R:16339101-16339221 15 4.09e-05 ATGACTTCTT CAGCCGCA GCCAAAGTCA chr2R:9579825-9579945 76 4.09e-05 TATAAATACC CAGCCGCA AAGTGGTCCC chrX:2035498-2035618 16 4.09e-05 TGAGGAGAGA CAACAGCA GCGACAACCT chr3R:30545077-30545197 65 6.81e-05 CATTTTTCGG CAGGAGCA GCAGGTGTGT chr3R:22750178-22750298 73 6.81e-05 ATTTGCGTGG CAGGAGCA GTCGCTGTCC chrX:2096455-2096575 77 1.10e-04 cgcacatcca caggcgca ggcacacgca chr2R:21182739-21182859 112 1.10e-04 TGAAATGCAG CAAGAGCA T chr3L:12892565-12892685 42 1.10e-04 aTGTAAGATA CAAGAGCA CGAACTGAGA chr3L:592351-592471 6 1.10e-04 CTTTC CAAGAGCA AGTGGAGCGA chr3R:25472046-25472166 69 1.40e-04 ACCGGTATCG CAACAACA ATTGAACCGC chr2L:1461015-1461135 46 1.40e-04 CCAGCGGGAG CAGCCACA TGCAACACGC chr3L:10290546-10290666 34 1.40e-04 AACAGCGGGG CAACAACA ACCACCAGTT chr2L:273059-273179 17 1.40e-04 TCTGGCGTAA CAGCCACA TCAGGTGGTG chr2R:22544154-22544274 78 1.40e-04 AAAAAAAATG CAGCCACA ACAAGCCACA chrX:6600833-6600953 56 1.54e-04 CCACTTTTAT CAAGCGCA CGCACTTGTT chr2R:10315815-10315935 28 1.83e-04 GGCCTGTCGG CAACCACA AGAAAGGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCMGCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10124789-10124909 1.4e-05 49_[+5]_63 chr3L:9501578-9501698 1.4e-05 4_[+5]_108 chrX:1754302-1754422 1.4e-05 90_[+5]_22 chr2L:308329-308449 1.4e-05 70_[+5]_42 chrX:19243723-19243843 1.4e-05 40_[+5]_72 chr2R:20063751-20063871 1.4e-05 81_[+5]_31 chr2R:21047424-21047544 1.4e-05 20_[+5]_92 chr2L:1646146-1646266 1.4e-05 61_[+5]_51 chr3L:16178627-16178747 4.1e-05 27_[+5]_85 chr2L:3000789-3000909 4.1e-05 12_[+5]_100 chr3R:11449543-11449663 4.1e-05 76_[+5]_36 chr2L:5490026-5490146 4.1e-05 19_[+5]_93 chrX:7959022-7959142 4.1e-05 109_[+5]_3 chr2R:16339101-16339221 4.1e-05 14_[+5]_98 chr2R:9579825-9579945 4.1e-05 75_[+5]_37 chrX:2035498-2035618 4.1e-05 15_[+5]_97 chr3R:30545077-30545197 6.8e-05 64_[+5]_48 chr3R:22750178-22750298 6.8e-05 72_[+5]_40 chrX:2096455-2096575 0.00011 76_[+5]_36 chr2R:21182739-21182859 0.00011 111_[+5]_1 chr3L:12892565-12892685 0.00011 41_[+5]_71 chr3L:592351-592471 0.00011 5_[+5]_107 chr3R:25472046-25472166 0.00014 68_[+5]_44 chr2L:1461015-1461135 0.00014 45_[+5]_67 chr3L:10290546-10290666 0.00014 33_[+5]_79 chr2L:273059-273179 0.00014 16_[+5]_96 chr2R:22544154-22544274 0.00014 77_[+5]_35 chrX:6600833-6600953 0.00015 55_[+5]_57 chr2R:10315815-10315935 0.00018 27_[+5]_85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCMGCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CARCMGCA width=8 seqs=29 chr2R:10124789-10124909 ( 50) CAGCAGCA 1 chr3L:9501578-9501698 ( 5) CAGCAGCA 1 chrX:1754302-1754422 ( 91) CAGCAGCA 1 chr2L:308329-308449 ( 71) CAGCAGCA 1 chrX:19243723-19243843 ( 41) CAGCAGCA 1 chr2R:20063751-20063871 ( 82) CAGCAGCA 1 chr2R:21047424-21047544 ( 21) CAGCAGCA 1 chr2L:1646146-1646266 ( 62) CAGCAGCA 1 chr3L:16178627-16178747 ( 28) CAGCCGCA 1 chr2L:3000789-3000909 ( 13) CAACAGCA 1 chr3R:11449543-11449663 ( 77) CAACAGCA 1 chr2L:5490026-5490146 ( 20) CAGCCGCA 1 chrX:7959022-7959142 ( 110) CAACAGCA 1 chr2R:16339101-16339221 ( 15) CAGCCGCA 1 chr2R:9579825-9579945 ( 76) CAGCCGCA 1 chrX:2035498-2035618 ( 16) CAACAGCA 1 chr3R:30545077-30545197 ( 65) CAGGAGCA 1 chr3R:22750178-22750298 ( 73) CAGGAGCA 1 chrX:2096455-2096575 ( 77) CAGGCGCA 1 chr2R:21182739-21182859 ( 112) CAAGAGCA 1 chr3L:12892565-12892685 ( 42) CAAGAGCA 1 chr3L:592351-592471 ( 6) CAAGAGCA 1 chr3R:25472046-25472166 ( 69) CAACAACA 1 chr2L:1461015-1461135 ( 46) CAGCCACA 1 chr3L:10290546-10290666 ( 34) CAACAACA 1 chr2L:273059-273179 ( 17) CAGCCACA 1 chr2R:22544154-22544274 ( 78) CAGCCACA 1 chrX:6600833-6600953 ( 56) CAAGCGCA 1 chr2R:10315815-10315935 ( 28) CAACCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCMGCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6156 E= 3.1e+002 -1150 207 -1150 -1150 194 -1150 -1150 -1150 55 -1150 138 -1150 -1150 167 2 -1150 133 53 -1150 -1150 -33 -1150 173 -1150 -1150 207 -1150 -1150 194 -1150 -1150 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCMGCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 3.1e+002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.379310 0.000000 0.620690 0.000000 0.000000 0.758621 0.241379 0.000000 0.655172 0.344828 0.000000 0.000000 0.206897 0.000000 0.793103 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCMGCA MEME-5 regular expression -------------------------------------------------------------------------------- CA[GA][CG][AC][GA]CA -------------------------------------------------------------------------------- Time 32.22 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:2906535-2906655 9.75e-04 48_[+2(1.38e-05)]_64 chr3L:5666926-5667046 5.81e-04 71_[+2(8.42e-05)]_30_[+3(1.94e-05)]_\ 3 chr3L:3178011-3178131 1.87e-02 52_[+3(8.16e-05)]_60 chr2R:20231652-20231772 1.20e-02 120 chr3R:22750178-22750298 2.15e-02 72_[+5(6.81e-05)]_40 chr3L:6331421-6331541 7.14e-04 70_[+2(1.38e-05)]_42 chr2R:8861165-8861285 4.51e-03 65_[+1(4.57e-05)]_47 chrX:13602591-13602711 1.11e-01 120 chrX:2035498-2035618 3.39e-04 15_[+5(4.09e-05)]_17_[+2(1.38e-05)]_\ 72 chr3L:15143247-15143367 1.26e-02 18_[+1(2.92e-05)]_94 chrX:7617520-7617640 7.51e-04 38_[+2(5.51e-05)]_66_[+3(4.05e-05)] chr3R:16737415-16737535 5.77e-02 74_[+3(8.16e-05)]_38 chr3L:586720-586840 1.77e-01 51_[+1(6.09e-05)]_61 chr2L:1646146-1646266 7.73e-02 61_[+5(1.36e-05)]_51 chr3L:592351-592471 2.25e-02 120 chr2R:6735193-6735313 4.32e-03 71_[+1(6.09e-05)]_41 chr3R:30527415-30527535 2.97e-01 120 chr2R:10315815-10315935 3.27e-03 120 chr2R:10281424-10281544 2.26e-01 120 chr2L:3655358-3655478 2.61e-02 38_[+1(7.62e-05)]_74 chr2R:9579825-9579945 1.01e-03 75_[+5(4.09e-05)]_37 chr3L:22404299-22404419 3.24e-02 120 chr3L:2458920-2459040 2.11e-02 28_[+3(1.94e-05)]_84 chr2L:11875087-11875207 1.68e-04 27_[+4(6.23e-05)]_85 chr3L:8814064-8814184 1.23e-02 120 chr3L:6698124-6698244 2.18e-03 75_[+4(8.31e-05)]_37 chr2L:9551083-9551203 4.51e-02 61_[+1(7.62e-05)]_51 chr2R:14970511-14970631 2.23e-02 45_[+2(2.63e-05)]_67 chr2L:16798850-16798970 4.35e-03 120 chr2R:8121567-8121687 3.94e-01 120 chr3L:19913447-19913567 1.27e-02 30_[+2(7.03e-05)]_82 chr2L:17227309-17227429 5.00e-03 3_[+4(8.31e-05)]_17_[+3(8.16e-05)]_\ 84 chr2R:21047424-21047544 3.72e-04 20_[+5(1.36e-05)]_92 chr3R:26992336-26992456 1.30e-02 34_[+2(5.51e-05)]_4_[+2(5.51e-05)]_\ 66 chr3R:21273164-21273284 1.88e-02 120 chr2R:20939071-20939191 2.40e-03 120 chr2L:14305753-14305873 6.16e-03 60_[+1(1.52e-05)]_52 chr3L:17856541-17856661 5.44e-01 120 chr3R:15282455-15282575 6.52e-01 120 chr3L:16974218-16974338 3.33e-04 74_[+1(1.52e-05)]_38 chr3R:8715489-8715609 6.10e-01 120 chrX:6738583-6738703 9.99e-03 37_[+5(8.30e-05)]_75 chrX:6871932-6872052 9.80e-02 81_[+1(6.09e-05)]_31 chr3R:9602251-9602371 3.48e-03 36_[+2(2.63e-05)]_76 chr3L:12398883-12399003 7.34e-02 120 chr3L:12892565-12892685 4.87e-03 120 chr2L:6701939-6702059 8.27e-03 88_[+3(8.16e-05)]_24 chr3R:15310857-15310977 3.59e-01 120 chr3R:29146874-29146994 2.69e-05 31_[+3(1.94e-05)]_5_[+2(1.38e-05)]_\ 68 chr2R:18664330-18664450 1.40e-05 1_[+4(6.23e-05)]_38_[+2(5.51e-05)]_\ 65 chr2R:17087840-17087960 1.61e-01 120 chrX:635385-635505 3.15e-02 120 chr2R:9207778-9207898 7.16e-03 120 chrX:6709423-6709543 1.34e-01 60_[+1(7.62e-05)]_52 chr2R:21367036-21367156 1.39e-02 30_[+2(8.42e-05)]_24_[+4(6.23e-05)]_\ 50 chr2L:10222971-10223091 8.67e-04 85_[+2(7.03e-05)]_27 chr2R:19169977-19170097 4.98e-02 120 chr2L:7711143-7711263 9.67e-02 88_[+1(2.92e-05)]_24 chr2L:7193067-7193187 4.08e-02 43_[+1(2.92e-05)]_69 chr3L:586920-587040 5.17e-01 120 chr2R:22544154-22544274 1.69e-03 47_[+1(2.92e-05)]_65 chr3R:23730667-23730787 8.69e-01 120 chr3R:26862345-26862465 6.47e-02 120 chr2L:12528396-12528516 1.76e-02 120 chr3L:2256913-2257033 8.75e-03 97_[+1(7.62e-05)]_15 chrX:8576820-8576940 2.43e-01 120 chr3R:9130306-9130426 4.35e-02 11_[+3(8.16e-05)]_101 chr3R:15268986-15269106 1.49e-01 120 chrX:2332788-2332908 6.44e-01 120 chr2L:4418176-4418296 2.69e-02 48_[+1(2.92e-05)]_64 chr2R:15247099-15247219 4.14e-02 120 chr3L:12205606-12205726 6.26e-02 20_[+1(7.62e-05)]_92 chr3L:1735724-1735844 3.17e-03 36_[+2(5.51e-05)]_16_[+1(2.92e-05)]_\ 52 chr2L:16234968-16235088 2.55e-02 120 chr2R:21634221-21634341 8.75e-03 3_[+2(7.03e-05)]_109 chr2R:21182739-21182859 3.85e-03 120 chr3R:9628178-9628298 6.75e-02 120 chr3R:30545077-30545197 1.90e-02 64_[+5(6.81e-05)]_48 chr2R:15989802-15989922 3.46e-03 120 chr4:458723-458843 3.59e-02 120 chr3R:5523516-5523636 7.86e-03 81_[+1(7.62e-05)]_31 chrX:20916576-20916696 2.80e-01 120 chr3R:6481872-6481992 1.42e-02 120 chr2R:20063751-20063871 1.94e-04 65_[+1(6.09e-05)]_8_[+5(1.36e-05)]_\ 31 chr3L:8128504-8128624 1.87e-02 120 chr3R:6683780-6683900 5.66e-03 60_[+1(2.92e-05)]_52 chr3L:587936-588056 4.06e-02 120 chr3R:24813149-24813269 3.36e-03 13_[+2(8.42e-05)]_99 chrX:6600833-6600953 1.23e-04 84_[+4(8.31e-05)]_28 chr2L:16198309-16198429 1.27e-02 73_[+1(7.62e-05)]_39 chr3L:14664492-14664612 2.88e-02 57_[+2(4.14e-05)]_55 chr2R:22654623-22654743 2.58e-01 120 chr3R:23298534-23298654 1.65e-02 15_[+1(2.92e-05)]_97 chr2R:15050489-15050609 2.30e-01 120 chr2R:16583385-16583505 1.84e-02 73_[+1(1.52e-05)]_39 chr3R:27926727-27926847 2.15e-04 30_[+2(1.38e-05)]_82 chr3R:25056774-25056894 1.04e-02 30_[+2(8.42e-05)]_82 chr3R:16042700-16042820 1.23e-01 120 chr3L:3805849-3805969 2.52e-02 4_[+1(7.62e-05)]_26_[+4(6.23e-05)]_\ 74 chr2R:15675339-15675459 8.35e-04 4_[+2(4.14e-05)]_77_[+4(8.31e-05)]_\ 5_[+1(9.00e-05)]_10 chr2R:17728676-17728796 2.04e-01 84_[+2(2.63e-05)]_28 chr2R:24074253-24074373 3.22e-01 120 chr3L:20932510-20932630 3.22e-03 120 chrX:8558416-8558536 4.14e-02 120 chrX:2949233-2949353 1.44e-01 120 chr3R:29834497-29834617 2.60e-02 28_[+1(2.92e-05)]_84 chr2L:2576613-2576733 2.44e-01 120 chr3L:1303093-1303213 4.95e-02 120 chrX:19765887-19766007 2.15e-01 9_[+4(6.23e-05)]_103 chr3L:16910290-16910410 2.69e-01 120 chr2L:1143409-1143529 1.54e-01 120 chrX:4707610-4707730 1.93e-01 120 chr3L:6978756-6978876 1.22e-01 59_[+1(7.62e-05)]_53 chr3R:25056981-25057101 9.10e-02 120 chrX:4280875-4280995 1.48e-02 40_[+1(2.92e-05)]_72 chr2L:273059-273179 9.83e-03 25_[+2(1.38e-05)]_10_[+2(1.38e-05)]_\ 28_[+2(2.63e-05)]_33 chrX:19243723-19243843 7.81e-02 40_[+5(1.36e-05)]_72 chr3R:14108246-14108366 5.87e-04 7_[+3(1.94e-05)]_105 chr2L:5560088-5560208 4.96e-03 105_[+4(8.31e-05)]_7 chr3L:3961157-3961277 6.92e-05 29_[+3(8.16e-05)]_25_[+1(2.92e-05)]_\ 50 chr2R:9937417-9937537 1.06e-02 104_[+3(1.94e-05)]_8 chr2R:16339101-16339221 1.91e-04 14_[+5(4.09e-05)]_98 chrX:7959022-7959142 1.54e-06 64_[+2(2.63e-05)]_6_[+4(2.07e-05)]_\ 23_[+5(4.09e-05)]_3 chrX:21389092-21389212 2.85e-02 88_[+2(2.63e-05)]_24 chr2R:7564845-7564965 8.31e-03 29_[+2(1.38e-05)]_83 chr3L:8747512-8747632 2.53e-01 120 chrX:18208258-18208378 3.77e-01 120 chr2L:9558126-9558246 3.44e-04 37_[+3(1.94e-05)]_37_[+5(8.30e-05)]_\ 30 chr2R:11367762-11367882 4.89e-01 120 chr3L:2114861-2114981 8.09e-02 120 chr3R:15486312-15486432 8.31e-01 120 chr2R:7620978-7621098 2.42e-02 61_[+1(7.62e-05)]_51 chr2L:7577796-7577916 1.26e-01 120 chr3L:12519004-12519124 2.42e-04 50_[+2(2.63e-05)]_41_[+1(4.57e-05)]_\ 13 chr3R:21775966-21776086 1.46e-04 47_[+2(1.38e-05)]_65 chr2L:10211152-10211272 6.17e-02 120 chr3R:24812565-24812685 4.29e-02 120 chrX:21031942-21032062 4.30e-02 120 chr3L:15073867-15073987 1.37e-01 120 chr3L:4278102-4278222 1.55e-01 120 chr2L:308329-308449 1.30e-02 70_[+5(1.36e-05)]_42 chr3L:8849660-8849780 1.33e-01 120 chr3L:13519836-13519956 5.68e-02 120 chrX:9208669-9208789 2.86e-04 16_[+3(1.94e-05)]_40_[+1(7.62e-05)]_\ 48 chr2R:14352500-14352620 9.51e-03 56_[+1(2.92e-05)]_56 chr2R:21696903-21697023 6.92e-03 33_[+2(1.38e-05)]_79 chr3L:16854222-16854342 4.14e-03 77_[+3(4.05e-05)]_35 chr2R:21674486-21674606 1.60e-02 28_[+2(8.42e-05)]_84 chr3R:9756432-9756552 4.19e-02 61_[+4(2.07e-05)]_7_[+4(2.07e-05)]_\ 36 chr2R:13245286-13245406 4.67e-02 47_[+1(2.92e-05)]_65 chr2R:17726432-17726552 4.66e-02 120 chr2L:8239397-8239517 2.05e-03 49_[+1(2.92e-05)]_44_[+4(2.07e-05)]_\ 11 chr2R:17728356-17728476 4.12e-02 31_[+2(4.14e-05)]_81 chrX:2096455-2096575 6.26e-02 120 chrX:16422197-16422317 5.66e-02 62_[+1(6.09e-05)]_50 chr2L:20075011-20075131 9.08e-01 120 chr3R:29510811-29510931 1.08e-02 37_[+1(1.52e-05)]_75 chr2L:3507888-3508008 2.12e-01 120 chr3R:30059995-30060115 9.52e-02 120 chr2L:839384-839504 1.06e-03 80_[+2(5.51e-05)]_32 chr3R:31610539-31610659 5.31e-03 30_[+1(6.09e-05)]_82 chr3R:19486140-19486260 5.50e-01 120 chrX:10803346-10803466 4.19e-04 30_[+4(6.23e-05)]_82 chrX:13112032-13112152 7.37e-02 31_[+1(7.62e-05)]_81 chr3R:29215710-29215830 1.28e-03 40_[+2(1.38e-05)]_72 chr3R:28628301-28628421 1.02e-02 58_[+2(2.63e-05)]_54 chr3R:13401395-13401515 4.15e-02 48_[+1(7.62e-05)]_64 chr3L:6731196-6731316 3.94e-02 35_[+1(2.92e-05)]_61_[+1(2.92e-05)]_\ 8 chr3R:19002538-19002658 8.05e-02 11_[+3(4.05e-05)]_22_[+3(8.16e-05)]_\ 71 chr3L:17843516-17843636 2.97e-01 120 chr2L:9167268-9167388 3.90e-03 120 chr3L:15329716-15329836 1.18e-02 67_[+1(9.00e-05)]_45 chr2R:14962179-14962299 1.33e-03 63_[+1(9.00e-05)]_2_[+4(6.23e-05)]_\ 39 chr3L:16475645-16475765 9.27e-03 120 chr3L:19202260-19202380 3.31e-01 120 chr3L:15726752-15726872 5.90e-04 13_[+3(6.02e-05)]_99 chr2R:9283297-9283417 1.06e-02 25_[+2(4.14e-05)]_87 chr3R:22233276-22233396 8.44e-03 22_[+4(6.23e-05)]_20_[+1(2.92e-05)]_\ 62 chrX:3136528-3136648 9.37e-03 10_[+2(1.38e-05)]_2_[+4(6.23e-05)]_\ 92 chr2L:2733131-2733251 1.40e-02 120 chrX:1754302-1754422 5.28e-04 90_[+5(1.36e-05)]_22 chr3L:2765157-2765277 4.37e-03 120 chr2R:16143073-16143193 1.81e-02 120 chr3L:349811-349931 1.02e-04 23_[+4(2.07e-05)]_37_[+1(6.09e-05)]_\ 44 chr2R:22927386-22927506 1.04e-02 120 chr3L:8411428-8411548 2.20e-01 120 chr3L:8553271-8553391 8.46e-01 120 chr3R:12007333-12007453 1.69e-04 58_[+1(2.92e-05)]_36_[+2(1.38e-05)]_\ 10 chrX:16571000-16571120 2.95e-03 64_[+3(4.05e-05)]_48 chr3L:9503672-9503792 5.96e-02 32_[+1(4.57e-05)]_80 chr3R:9393158-9393278 6.37e-04 96_[+4(2.07e-05)]_16 chr2L:7993389-7993509 4.41e-02 80_[+1(6.09e-05)]_32 chr3L:3165507-3165627 2.12e-02 120 chr2L:5490026-5490146 3.02e-04 1_[+4(6.23e-05)]_10_[+5(4.09e-05)]_\ 55_[+1(6.09e-05)]_30 chr3L:10290546-10290666 6.60e-03 120 chr2R:14001823-14001943 1.97e-02 120 chrX:16793306-16793426 3.92e-03 29_[+1(4.57e-05)]_83 chr2L:6941855-6941975 1.53e-01 37_[+4(8.31e-05)]_75 chr3R:31987953-31988073 3.80e-03 84_[+4(8.31e-05)]_28 chr3R:15290243-15290363 3.59e-01 120 chr2R:9388322-9388442 1.69e-01 120 chr3R:11449543-11449663 4.30e-02 76_[+5(4.09e-05)]_36 chr3R:13780899-13781019 2.49e-01 120 chr3R:31462780-31462900 1.76e-03 87_[+2(1.38e-05)]_25 chr2L:3000789-3000909 1.45e-02 12_[+5(4.09e-05)]_87_[+1(6.09e-05)]_\ 5 chr2L:16299491-16299611 3.17e-02 85_[+2(1.38e-05)]_27 chr2L:11191753-11191873 4.98e-02 101_[+1(7.62e-05)]_11 chr3L:13863219-13863339 1.02e-02 29_[+2(4.14e-05)]_83 chr3R:26919844-26919964 3.54e-02 120 chr3L:2152860-2152980 1.93e-01 80_[+1(7.62e-05)]_32 chr3L:5754970-5755090 1.28e-02 63_[+1(4.57e-05)]_49 chrX:16104503-16104623 3.91e-01 120 chr3R:20542802-20542922 2.24e-03 7_[+3(1.94e-05)]_105 chr3L:2761800-2761920 3.33e-01 120 chrX:13189147-13189267 2.42e-03 76_[+1(4.57e-05)]_36 chrX:2037251-2037371 2.01e-01 120 chr2R:17730954-17731074 1.54e-01 71_[+1(1.52e-05)]_41 chr2L:1461015-1461135 9.35e-03 25_[+1(4.57e-05)]_87 chr2L:16231394-16231514 6.77e-01 120 chr3L:9501578-9501698 2.33e-04 4_[+5(1.36e-05)]_108 chr3L:13520040-13520160 3.07e-03 101_[+4(2.07e-05)]_11 chrX:6678775-6678895 4.80e-02 110_[+1(7.62e-05)]_2 chr2R:15891533-15891653 6.01e-03 120 chr3R:25472046-25472166 1.07e-02 20_[+1(6.09e-05)]_92 chr2R:7053828-7053948 1.81e-01 120 chr3L:16178627-16178747 1.47e-02 27_[+5(4.09e-05)]_85 chr3R:9516979-9517099 3.77e-02 72_[+1(7.62e-05)]_40 chr3R:9886578-9886698 5.98e-05 55_[+5(8.30e-05)]_30_[+4(2.07e-05)]_\ 19 chr3R:16218806-16218926 1.10e-02 112_[+2(4.14e-05)] chr3L:478747-478867 1.07e-02 67_[+2(1.38e-05)]_45 chr3R:14599236-14599356 1.68e-01 120 chr3L:8576014-8576134 1.80e-01 120 chr3R:17777097-17777217 4.98e-02 20_[+3(8.16e-05)]_92 chr3R:16277668-16277788 2.34e-02 25_[+4(6.23e-05)]_87 chr4:572493-572613 1.35e-03 85_[+2(2.63e-05)]_27 chr2L:20098334-20098454 9.19e-03 120 chr2R:7421835-7421955 9.38e-02 120 chr3R:7995980-7996100 7.09e-03 37_[+1(9.00e-05)]_75 chr2L:12505170-12505290 2.83e-02 120 chr2R:13805900-13806020 3.50e-03 72_[+3(1.94e-05)]_40 chr3R:5321684-5321804 7.72e-05 57_[+4(2.07e-05)]_55 chr3R:24877171-24877291 3.23e-04 88_[+2(4.14e-05)]_24 chr3L:9433390-9433510 9.49e-02 77_[+4(6.23e-05)]_35 chr2R:17697640-17697760 9.06e-01 120 chr2L:3524543-3524663 1.11e-02 31_[+4(6.23e-05)]_[+4(6.23e-05)]_73 chr2L:12025598-12025718 2.26e-02 120 chr2L:4955562-4955682 1.61e-01 120 chr2R:13560480-13560600 1.26e-01 2_[+2(4.14e-05)]_110 chr3R:12441546-12441666 7.40e-02 79_[+1(7.62e-05)]_33 chr2R:10124789-10124909 1.61e-03 43_[+5(1.36e-05)]_19_[+5(1.36e-05)]_\ 42 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************