******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG16863.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:18138415-18138535 1.0000 120 chrX:5689474-5689594 1.0000 120 chr2L:7811319-7811439 1.0000 120 chr2L:4883057-4883177 1.0000 120 chrX:1927609-1927729 1.0000 120 chr3L:14776117-14776237 1.0000 120 chr3R:30022351-30022471 1.0000 120 chr3R:16349308-16349428 1.0000 120 chr3L:1940972-1941092 1.0000 120 chrX:5689674-5689794 1.0000 120 chr2R:15934702-15934822 1.0000 120 chrX:1033194-1033314 1.0000 120 chr3R:16349538-16349658 1.0000 120 chr3R:15363806-15363926 1.0000 120 chr2R:10066582-10066702 1.0000 120 chr2L:6338339-6338459 1.0000 120 chr2R:25011484-25011604 1.0000 120 chr3R:24876005-24876125 1.0000 120 chrX:1927815-1927935 1.0000 120 chr3L:1035113-1035233 1.0000 120 chrX:11124737-11124857 1.0000 120 chr3L:20221064-20221184 1.0000 120 chr3L:16090392-16090512 1.0000 120 chr2R:8156623-8156743 1.0000 120 chrX:2447834-2447954 1.0000 120 chrX:3538932-3539052 1.0000 120 chr2L:3100886-3101006 1.0000 120 chr2R:12537581-12537701 1.0000 120 chr2R:10252339-10252459 1.0000 120 chr3R:24026297-24026417 1.0000 120 chrX:6037614-6037734 1.0000 120 chr2L:6794969-6795089 1.0000 120 chr2L:16816069-16816189 1.0000 120 chr2L:18694879-18694999 1.0000 120 chr2R:21910002-21910122 1.0000 120 chrX:5745149-5745269 1.0000 120 chrX:6663287-6663407 1.0000 120 chr3L:6978239-6978359 1.0000 120 chr3L:16544366-16544486 1.0000 120 chrX:8671519-8671639 1.0000 120 chrX:13128011-13128131 1.0000 120 chrX:16781210-16781330 1.0000 120 chr3R:23941707-23941827 1.0000 120 chr2L:3598575-3598695 1.0000 120 chr3R:9344965-9345085 1.0000 120 chr2L:1316548-1316668 1.0000 120 chr3R:29591708-29591828 1.0000 120 chr2R:15931957-15932077 1.0000 120 chr2R:12173432-12173552 1.0000 120 chrX:6615588-6615708 1.0000 120 chr3R:13448546-13448666 1.0000 120 chrX:21323995-21324115 1.0000 120 chr2L:20944491-20944611 1.0000 120 chrX:13630475-13630595 1.0000 120 chrX:3403571-3403691 1.0000 120 chr2L:493438-493558 1.0000 120 chr3R:23387041-23387161 1.0000 120 chr3R:6818678-6818798 1.0000 120 chr2R:17444976-17445096 1.0000 120 chrX:11846474-11846594 1.0000 120 chr2L:14376938-14377058 1.0000 120 chrX:5604325-5604445 1.0000 120 chrX:5889142-5889262 1.0000 120 chr3R:26853754-26853874 1.0000 120 chrX:19494467-19494587 1.0000 120 chr3L:5926058-5926178 1.0000 120 chr3R:21850341-21850461 1.0000 120 chr2R:21527439-21527559 1.0000 120 chr2L:3856530-3856650 1.0000 120 chr2L:8554415-8554535 1.0000 120 chr3R:22526518-22526638 1.0000 120 chr3R:23300770-23300890 1.0000 120 chr3L:16760380-16760500 1.0000 120 chr3R:10648946-10649066 1.0000 120 chr2L:11331799-11331919 1.0000 120 chr2L:18377358-18377478 1.0000 120 chrX:11653159-11653279 1.0000 120 chr2R:7077001-7077121 1.0000 120 chrX:19146425-19146545 1.0000 120 chr2L:8198893-8199013 1.0000 120 chr2R:8650545-8650665 1.0000 120 chr3R:23303363-23303483 1.0000 120 chrX:6091000-6091120 1.0000 120 chr3R:24585520-24585640 1.0000 120 chr3R:13892991-13893111 1.0000 120 chr2L:7155035-7155155 1.0000 120 chrX:13253259-13253379 1.0000 120 chr2L:6819580-6819700 1.0000 120 chr2R:19310998-19311118 1.0000 120 chr2L:488431-488551 1.0000 120 chrX:4498389-4498509 1.0000 120 chr3R:31687907-31688027 1.0000 120 chr3R:16957904-16958024 1.0000 120 chrX:3367421-3367541 1.0000 120 chr3R:26121899-26122019 1.0000 120 chr2L:9779277-9779397 1.0000 120 chr2L:11338419-11338539 1.0000 120 chrX:8491672-8491792 1.0000 120 chrX:5084852-5084972 1.0000 120 chr3R:22878545-22878665 1.0000 120 chr2L:277309-277429 1.0000 120 chr3R:12451497-12451617 1.0000 120 chrX:19505722-19505842 1.0000 120 chr2L:249576-249696 1.0000 120 chr3R:28857418-28857538 1.0000 120 chrX:14602699-14602819 1.0000 120 chr2L:4197750-4197870 1.0000 120 chr2R:12274352-12274472 1.0000 120 chr2L:3776066-3776186 1.0000 120 chr3L:908678-908798 1.0000 120 chrX:14622318-14622438 1.0000 120 chrX:4581903-4582023 1.0000 120 chr3R:11617515-11617635 1.0000 120 chr2R:9686082-9686202 1.0000 120 chr3R:19165008-19165128 1.0000 120 chr3L:295157-295277 1.0000 120 chr2L:20093880-20094000 1.0000 120 chr2R:15835459-15835579 1.0000 120 chr3R:23872977-23873097 1.0000 120 chr2L:8573024-8573144 1.0000 120 chr3L:21049750-21049870 1.0000 120 chrX:19009046-19009166 1.0000 120 chrX:5309045-5309165 1.0000 120 chr3R:10521351-10521471 1.0000 120 chr3L:3875123-3875243 1.0000 120 chrX:3068408-3068528 1.0000 120 chr3R:19113944-19114064 1.0000 120 chr3R:10628414-10628534 1.0000 120 chr3L:5765657-5765777 1.0000 120 chrX:14213614-14213734 1.0000 120 chrX:10067692-10067812 1.0000 120 chr2L:17583121-17583241 1.0000 120 chrX:2166277-2166397 1.0000 120 chrX:5972159-5972279 1.0000 120 chr3R:8784938-8785058 1.0000 120 chr2L:3600964-3601084 1.0000 120 chr3R:16069444-16069564 1.0000 120 chrX:15653656-15653776 1.0000 120 chr2L:6907836-6907956 1.0000 120 chrX:18404906-18405026 1.0000 120 chr2R:23176747-23176867 1.0000 120 chrX:1517616-1517736 1.0000 120 chrX:16278031-16278151 1.0000 120 chr3L:11303942-11304062 1.0000 120 chr2L:1428496-1428616 1.0000 120 chrX:11154017-11154137 1.0000 120 chr2L:8738267-8738387 1.0000 120 chr3L:3380535-3380655 1.0000 120 chrX:1370141-1370261 1.0000 120 chr2R:14576037-14576157 1.0000 120 chrX:18921053-18921173 1.0000 120 chr2L:7957047-7957167 1.0000 120 chr3L:5987805-5987925 1.0000 120 chr3R:14470767-14470887 1.0000 120 chr2R:11792801-11792921 1.0000 120 chrX:10825494-10825614 1.0000 120 chr3R:30022151-30022271 1.0000 120 chr2R:14913178-14913298 1.0000 120 chr3R:6468195-6468315 1.0000 120 chr2R:22688623-22688743 1.0000 120 chr3R:16948859-16948979 1.0000 120 chr3R:14657167-14657287 1.0000 120 chrX:17582810-17582930 1.0000 120 chr2R:11628146-11628266 1.0000 120 chr3L:18784697-18784817 1.0000 120 chr2L:19867029-19867149 1.0000 120 chr3R:31169064-31169184 1.0000 120 chrX:19683490-19683610 1.0000 120 chr2R:12742663-12742783 1.0000 120 chr3L:3305547-3305667 1.0000 120 chr3L:8395721-8395841 1.0000 120 chrX:17125088-17125208 1.0000 120 chr2R:24086524-24086644 1.0000 120 chrX:1859020-1859140 1.0000 120 chr2L:18900029-18900149 1.0000 120 chr2L:15751154-15751274 1.0000 120 chr2L:7043220-7043340 1.0000 120 chrX:9137287-9137407 1.0000 120 chr2L:19508763-19508883 1.0000 120 chr2R:22387697-22387817 1.0000 120 chrX:2318517-2318637 1.0000 120 chrX:16782207-16782327 1.0000 120 chr2R:21134604-21134724 1.0000 120 chr2L:19159257-19159377 1.0000 120 chrX:17887314-17887434 1.0000 120 chr3L:16769940-16770060 1.0000 120 chrX:19852041-19852161 1.0000 120 chr3R:16748689-16748809 1.0000 120 chr2L:1462208-1462328 1.0000 120 chr3R:21187176-21187296 1.0000 120 chr2L:3852242-3852362 1.0000 120 chr3L:12062972-12063092 1.0000 120 chr2R:7987886-7988006 1.0000 120 chrX:22837482-22837602 1.0000 120 chr2R:8615308-8615428 1.0000 120 chr3L:5857040-5857160 1.0000 120 chr3L:745656-745776 1.0000 120 chr3R:8801460-8801580 1.0000 120 chr3R:26888424-26888544 1.0000 120 chr3R:8171614-8171734 1.0000 120 chrX:2136481-2136601 1.0000 120 chr2L:6339621-6339741 1.0000 120 chr3L:20944353-20944473 1.0000 120 chrX:5082980-5083100 1.0000 120 chrX:3690704-3690824 1.0000 120 chrX:17738335-17738455 1.0000 120 chr2L:522874-522994 1.0000 120 chr2R:15240284-15240404 1.0000 120 chr2R:25085529-25085649 1.0000 120 chrX:12454470-12454590 1.0000 120 chr2L:3003551-3003671 1.0000 120 chrX:19770300-19770420 1.0000 120 chr3L:1578655-1578775 1.0000 120 chr3L:21130921-21131041 1.0000 120 chr2R:9440451-9440571 1.0000 120 chr3R:13064202-13064322 1.0000 120 chr3L:5881659-5881779 1.0000 120 chr3L:1463785-1463905 1.0000 120 chr2R:13999376-13999496 1.0000 120 chr2R:20067252-20067372 1.0000 120 chr3R:9055185-9055305 1.0000 120 chr2R:6630652-6630772 1.0000 120 chr3R:8744319-8744439 1.0000 120 chr3R:22862197-22862317 1.0000 120 chr3R:15793627-15793747 1.0000 120 chr2R:11738664-11738784 1.0000 120 chr3L:21954533-21954653 1.0000 120 chr3L:8751436-8751556 1.0000 120 chr3R:5636844-5636964 1.0000 120 chr2L:20950780-20950900 1.0000 120 chr3L:872585-872705 1.0000 120 chrX:9664594-9664714 1.0000 120 chrX:2978151-2978271 1.0000 120 chr2L:277519-277639 1.0000 120 chrX:6621724-6621844 1.0000 120 chr3R:30413982-30414102 1.0000 120 chrX:12004078-12004198 1.0000 120 chr2L:858307-858427 1.0000 120 chr2L:7532826-7532946 1.0000 120 chrX:17176727-17176847 1.0000 120 chr3R:21270052-21270172 1.0000 120 chr3R:31395375-31395495 1.0000 120 chr3R:5998446-5998566 1.0000 120 chr3R:8819613-8819733 1.0000 120 chr3R:30191644-30191764 1.0000 120 chr2R:15835660-15835780 1.0000 120 chr3L:3853022-3853142 1.0000 120 chr3L:12803811-12803931 1.0000 120 chr2R:14362956-14363076 1.0000 120 chr2L:8982786-8982906 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG16863/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG16863.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.317 C 0.188 G 0.179 T 0.316 Background letter frequencies (from file dataset with add-one prior applied): A 0.317 C 0.188 G 0.179 T 0.316 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCRGSWGC MEME-1 width = 8 sites = 25 llr = 237 E-value = 5.2e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCRGSWGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::4::4:: pos.-specific C :a::41:a probability G a:486:a: matrix T ::22:6:: bits 2.5 ** ** 2.2 ** ** 2.0 ** ** 1.7 ** ** Relative 1.5 ** ** ** Entropy 1.2 ** ** ** (13.7 bits) 1.0 ** ** ** 0.7 ** ** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCAGGTGC consensus GTCA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGSWGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6091000-6091120 67 2.05e-06 GTATTTCTAA GCGGGTGC CTACTGTGGG chr3R:26853754-26853874 58 4.21e-06 AGAAGCAGTG GCGGCTGC CCTACACTTT chr2L:6907836-6907956 16 9.90e-06 TGGCATCCCC GCAGGTGC TACAAGAAAT chr3R:21850341-21850461 104 9.90e-06 GGTTCACTGT GCGGGAGC GGCCCTTGT chr2L:6338339-6338459 70 9.90e-06 ATATCGATAC GCAGGTGC TGACTGAGTA chr3L:14776117-14776237 39 9.90e-06 ACTAAAAATG GCAGGTGC GTAGGGGGTA chrX:2978151-2978271 27 1.59e-05 TAGTTAAAAA GCAGCTGC CTGCGAATGC chr3L:20944353-20944473 37 1.59e-05 AAACAAATGA GCGGCAGC AGGCAGAATA chr3L:5926058-5926178 15 1.59e-05 TCTTTTAGGT GCAGCTGC ATATTCAAAT chr2L:18694879-18694999 104 1.59e-05 GCGACCTGTA GCAGCTGC TTGGGAAAT chr2R:25011484-25011604 70 1.59e-05 CACGACGGCC GCGGCAGC GCTTTCTGAA chrX:19494467-19494587 71 1.95e-05 GATGCGGGAT GCAGGAGC TCAGCTCCAA chr2R:22688623-22688743 74 2.34e-05 TGATGGAAGG GCAGCAGC TCCGTGTTGG chr2R:12274352-12274472 27 2.34e-05 gcaagaagca gcagcagC ATCCACCAGT chr3L:872585-872705 110 2.82e-05 CTCATCTCTA GCGGGCGC CGT chr2L:20950780-20950900 47 3.69e-05 TTTTGTGCTA GCGTGTGC TTCAGCCGTG chr2R:24086524-24086644 70 3.69e-05 atcgataCCC GCGTGTGC GTTCGCATTT chr2R:11628146-11628266 86 3.69e-05 CGCCAGGGGC GCTGCTGC ACACAAAATA chrX:1517616-1517736 14 3.69e-05 AGTCTGTTCT GCTGCTGC TTAGAGATGG chrX:5972159-5972279 11 3.69e-05 GGAGCCATAG GCGTGTGC CAGGGGGTTA chr2L:18377358-18377478 113 3.69e-05 TCTGTTGCTT GCGTGTGC chr3R:24876005-24876125 106 4.27e-05 tcgcactctc gctggagc acacacg chr2R:22387697-22387817 101 7.96e-05 TTGTTTGTCT GCATGAGC ATAAATTTAG chr3L:16544366-16544486 28 7.96e-05 AATTCCACAT GCATGAGC ACAGTGAGTA chr3R:31169064-31169184 23 9.94e-05 CCACTCATCA GCTGCCGC TGGAAAACTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGSWGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6091000-6091120 2.1e-06 66_[+1]_46 chr3R:26853754-26853874 4.2e-06 57_[+1]_55 chr2L:6907836-6907956 9.9e-06 15_[+1]_97 chr3R:21850341-21850461 9.9e-06 103_[+1]_9 chr2L:6338339-6338459 9.9e-06 69_[+1]_43 chr3L:14776117-14776237 9.9e-06 38_[+1]_74 chrX:2978151-2978271 1.6e-05 26_[+1]_86 chr3L:20944353-20944473 1.6e-05 36_[+1]_76 chr3L:5926058-5926178 1.6e-05 14_[+1]_98 chr2L:18694879-18694999 1.6e-05 103_[+1]_9 chr2R:25011484-25011604 1.6e-05 69_[+1]_43 chrX:19494467-19494587 2e-05 70_[+1]_42 chr2R:22688623-22688743 2.3e-05 73_[+1]_39 chr2R:12274352-12274472 2.3e-05 26_[+1]_86 chr3L:872585-872705 2.8e-05 109_[+1]_3 chr2L:20950780-20950900 3.7e-05 46_[+1]_66 chr2R:24086524-24086644 3.7e-05 69_[+1]_43 chr2R:11628146-11628266 3.7e-05 85_[+1]_27 chrX:1517616-1517736 3.7e-05 13_[+1]_99 chrX:5972159-5972279 3.7e-05 10_[+1]_102 chr2L:18377358-18377478 3.7e-05 112_[+1] chr3R:24876005-24876125 4.3e-05 105_[+1]_7 chr2R:22387697-22387817 8e-05 100_[+1]_12 chr3L:16544366-16544486 8e-05 27_[+1]_85 chr3R:31169064-31169184 9.9e-05 22_[+1]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGSWGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCRGSWGC width=8 seqs=25 chrX:6091000-6091120 ( 67) GCGGGTGC 1 chr3R:26853754-26853874 ( 58) GCGGCTGC 1 chr2L:6907836-6907956 ( 16) GCAGGTGC 1 chr3R:21850341-21850461 ( 104) GCGGGAGC 1 chr2L:6338339-6338459 ( 70) GCAGGTGC 1 chr3L:14776117-14776237 ( 39) GCAGGTGC 1 chrX:2978151-2978271 ( 27) GCAGCTGC 1 chr3L:20944353-20944473 ( 37) GCGGCAGC 1 chr3L:5926058-5926178 ( 15) GCAGCTGC 1 chr2L:18694879-18694999 ( 104) GCAGCTGC 1 chr2R:25011484-25011604 ( 70) GCGGCAGC 1 chrX:19494467-19494587 ( 71) GCAGGAGC 1 chr2R:22688623-22688743 ( 74) GCAGCAGC 1 chr2R:12274352-12274472 ( 27) GCAGCAGC 1 chr3L:872585-872705 ( 110) GCGGGCGC 1 chr2L:20950780-20950900 ( 47) GCGTGTGC 1 chr2R:24086524-24086644 ( 70) GCGTGTGC 1 chr2R:11628146-11628266 ( 86) GCTGCTGC 1 chrX:1517616-1517736 ( 14) GCTGCTGC 1 chrX:5972159-5972279 ( 11) GCGTGTGC 1 chr2L:18377358-18377478 ( 113) GCGTGTGC 1 chr3R:24876005-24876125 ( 106) GCTGGAGC 1 chr2R:22387697-22387817 ( 101) GCATGAGC 1 chr3L:16544366-16544486 ( 28) GCATGAGC 1 chr3R:31169064-31169184 ( 23) GCTGCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGSWGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 5.2e-003 -1129 -1129 248 -1129 -1129 241 -1129 -1129 47 -1129 116 -98 -1129 -1129 209 -40 -1129 122 165 -1129 18 -123 -1129 83 -1129 -1129 248 -1129 -1129 241 -1129 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGSWGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 5.2e-003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.440000 0.000000 0.400000 0.160000 0.000000 0.000000 0.760000 0.240000 0.000000 0.440000 0.560000 0.000000 0.360000 0.080000 0.000000 0.560000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGSWGC MEME-1 regular expression -------------------------------------------------------------------------------- GC[AG][GT][GC][TA]GC -------------------------------------------------------------------------------- Time 7.48 secs. ******************************************************************************** ******************************************************************************** MOTIF SYATCGAT MEME-2 width = 8 sites = 25 llr = 243 E-value = 3.0e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif SYATCGAT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a:::a: pos.-specific C 44::a::: probability G 6::::a:: matrix T :6:a:::a bits 2.5 ** 2.2 ** 2.0 ** 1.7 ****** Relative 1.5 * ****** Entropy 1.2 * ****** (14.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTATCGAT consensus CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYATCGAT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14362956-14363076 30 1.14e-05 GTTCAGCAAA GCATCGAT ATCAACAAAA chr3R:8801460-8801580 66 1.14e-05 CTGGCTGCAA GCATCGAT TAAATACAAA chrX:19852041-19852161 45 1.14e-05 CGTTCGATAA GCATCGAT TTTCCGATTG chrX:21323995-21324115 13 1.14e-05 CACTTTCGCA GCATCGAT GAGTTTTCCG chrX:2447834-2447954 107 1.14e-05 CGACACTACG GCATCGAT ACCAAC chr3L:1035113-1035233 22 1.14e-05 ACGATAACAG GCATCGAT TGTACTACTA chr2R:25011484-25011604 39 1.14e-05 ACATATCGAT GCATCGAT ATGTCGTAGT chr2R:15934702-15934822 4 1.14e-05 TAA GCATCGAT GTTTTTCGAT chr3L:1940972-1941092 57 1.14e-05 AGCTGCATAG GCATCGAT AATATTTGTA chr3L:14776117-14776237 69 1.14e-05 CCATTCATTG GCATCGAT ACTTTTTAGA chr3R:5998446-5998566 18 4.24e-05 TGCCACGAAA GTATCGAT CTCGGCGTAT chr2R:8156623-8156743 55 4.24e-05 ATCGATGCCG CCATCGAT GCTGACAATC chrX:1927609-1927729 20 4.24e-05 AGTACGGATG GTATCGAT TAAATTCCCA chr2L:4883057-4883177 14 4.24e-05 ACAACAAAAA GTATCGAT TACTGGCATC chrX:18138415-18138535 22 4.24e-05 TAACATCGAT GTATCGAT GCCATATCGA chr2R:24086524-24086644 58 6.25e-05 atctgtgtct ctatcgat aCCCGCGTGT chrX:19505722-19505842 109 6.25e-05 GAGCACCAAA CTATCGAT AACG chr2L:9779277-9779397 2 6.25e-05 t ctatcgat attccagaaa chr2R:15931957-15932077 27 6.25e-05 ATCGATGCTA CTATCGAT AGTATCGAAC chr3R:29591708-29591828 79 6.25e-05 CCTTCGGTTG CTATCGAT AGCCAATAGC chr2R:10252339-10252459 107 6.25e-05 CTTATCGATA CTATCGAT GTTTCC chrX:11124737-11124857 21 6.25e-05 GGTACTCGAA CTATCGAT AGTTGCGTCT chr2R:10066582-10066702 10 6.25e-05 TTTTTTGGG CTATCGAT GTTTTTATTG chrX:1033194-1033314 31 6.25e-05 GGCGCCGATA CTATCGAT ACAAGCCCAG chr2L:7811319-7811439 53 6.25e-05 CTTTCGACGA CTATCGAT CCTCTGTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYATCGAT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14362956-14363076 1.1e-05 29_[+2]_83 chr3R:8801460-8801580 1.1e-05 65_[+2]_47 chrX:19852041-19852161 1.1e-05 44_[+2]_68 chrX:21323995-21324115 1.1e-05 12_[+2]_100 chrX:2447834-2447954 1.1e-05 106_[+2]_6 chr3L:1035113-1035233 1.1e-05 21_[+2]_91 chr2R:25011484-25011604 1.1e-05 38_[+2]_74 chr2R:15934702-15934822 1.1e-05 3_[+2]_109 chr3L:1940972-1941092 1.1e-05 56_[+2]_56 chr3L:14776117-14776237 1.1e-05 68_[+2]_44 chr3R:5998446-5998566 4.2e-05 17_[+2]_95 chr2R:8156623-8156743 4.2e-05 54_[+2]_58 chrX:1927609-1927729 4.2e-05 19_[+2]_93 chr2L:4883057-4883177 4.2e-05 13_[+2]_99 chrX:18138415-18138535 4.2e-05 21_[+2]_91 chr2R:24086524-24086644 6.2e-05 57_[+2]_55 chrX:19505722-19505842 6.2e-05 108_[+2]_4 chr2L:9779277-9779397 6.2e-05 1_[+2]_111 chr2R:15931957-15932077 6.2e-05 26_[+2]_86 chr3R:29591708-29591828 6.2e-05 78_[+2]_34 chr2R:10252339-10252459 6.2e-05 106_[+2]_6 chrX:11124737-11124857 6.2e-05 20_[+2]_92 chr2R:10066582-10066702 6.2e-05 9_[+2]_103 chrX:1033194-1033314 6.2e-05 30_[+2]_82 chr2L:7811319-7811439 6.2e-05 52_[+2]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYATCGAT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SYATCGAT width=8 seqs=25 chr2R:14362956-14363076 ( 30) GCATCGAT 1 chr3R:8801460-8801580 ( 66) GCATCGAT 1 chrX:19852041-19852161 ( 45) GCATCGAT 1 chrX:21323995-21324115 ( 13) GCATCGAT 1 chrX:2447834-2447954 ( 107) GCATCGAT 1 chr3L:1035113-1035233 ( 22) GCATCGAT 1 chr2R:25011484-25011604 ( 39) GCATCGAT 1 chr2R:15934702-15934822 ( 4) GCATCGAT 1 chr3L:1940972-1941092 ( 57) GCATCGAT 1 chr3L:14776117-14776237 ( 69) GCATCGAT 1 chr3R:5998446-5998566 ( 18) GTATCGAT 1 chr2R:8156623-8156743 ( 55) CCATCGAT 1 chrX:1927609-1927729 ( 20) GTATCGAT 1 chr2L:4883057-4883177 ( 14) GTATCGAT 1 chrX:18138415-18138535 ( 22) GTATCGAT 1 chr2R:24086524-24086644 ( 58) CTATCGAT 1 chrX:19505722-19505842 ( 109) CTATCGAT 1 chr2L:9779277-9779397 ( 2) CTATCGAT 1 chr2R:15931957-15932077 ( 27) CTATCGAT 1 chr3R:29591708-29591828 ( 79) CTATCGAT 1 chr2R:10252339-10252459 ( 107) CTATCGAT 1 chrX:11124737-11124857 ( 21) CTATCGAT 1 chr2R:10066582-10066702 ( 10) CTATCGAT 1 chrX:1033194-1033314 ( 31) CTATCGAT 1 chr2L:7811319-7811439 ( 53) CTATCGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYATCGAT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2744 E= 3.0e-004 -1129 122 165 -1129 -1129 122 -1129 83 166 -1129 -1129 -1129 -1129 -1129 -1129 166 -1129 241 -1129 -1129 -1129 -1129 248 -1129 166 -1129 -1129 -1129 -1129 -1129 -1129 166 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYATCGAT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 3.0e-004 0.000000 0.440000 0.560000 0.000000 0.000000 0.440000 0.000000 0.560000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYATCGAT MEME-2 regular expression -------------------------------------------------------------------------------- [GC][TC]ATCGAT -------------------------------------------------------------------------------- Time 13.78 secs. ******************************************************************************** ******************************************************************************** MOTIF GCKYGCTG MEME-3 width = 8 sites = 8 llr = 90 E-value = 5.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCKYGCTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:6:a:: probability G a:5:a::a matrix T ::54::a: bits 2.5 ** ** * 2.2 ** ** * 2.0 ** ** * 1.7 ** **** Relative 1.5 ** **** Entropy 1.2 ** ***** (16.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCGCTG consensus TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKYGCTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21270052-21270172 93 2.16e-06 TGGCAGACCC GCGCGCTG TATTACGAAG chr3R:9055185-9055305 103 2.16e-06 CTCAAACGTG GCGCGCTG GGTATCTTTT chrX:17738335-17738455 43 2.16e-06 TAACATCGCT GCGCGCTG CGCAAATGTT chr2R:23176747-23176867 43 5.96e-06 AGTGCCTGCC GCTCGCTG CCTCAATTTC chr3L:1035113-1035233 63 5.96e-06 GCTAGCATAA GCTCGCTG ATACAACACT chr3R:26853754-26853874 4 9.58e-06 CTC GCGTGCTG CCAGCCACAA chr3L:3380535-3380655 81 1.60e-05 CAGATGAAAG GCTTGCTG AGATAGATAG chr2L:3100886-3101006 66 1.60e-05 ATTATCTTCT GCTTGCTG AATATATCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKYGCTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21270052-21270172 2.2e-06 92_[+3]_20 chr3R:9055185-9055305 2.2e-06 102_[+3]_10 chrX:17738335-17738455 2.2e-06 42_[+3]_70 chr2R:23176747-23176867 6e-06 42_[+3]_70 chr3L:1035113-1035233 6e-06 62_[+3]_50 chr3R:26853754-26853874 9.6e-06 3_[+3]_109 chr3L:3380535-3380655 1.6e-05 80_[+3]_32 chr2L:3100886-3101006 1.6e-05 65_[+3]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKYGCTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCKYGCTG width=8 seqs=8 chr3R:21270052-21270172 ( 93) GCGCGCTG 1 chr3R:9055185-9055305 ( 103) GCGCGCTG 1 chrX:17738335-17738455 ( 43) GCGCGCTG 1 chr2R:23176747-23176867 ( 43) GCTCGCTG 1 chr3L:1035113-1035233 ( 63) GCTCGCTG 1 chr3R:26853754-26853874 ( 4) GCGTGCTG 1 chr3L:3380535-3380655 ( 81) GCTTGCTG 1 chr2L:3100886-3101006 ( 66) GCTTGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKYGCTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 5.0e+003 -965 -965 248 -965 -965 241 -965 -965 -965 -965 148 66 -965 173 -965 25 -965 -965 248 -965 -965 241 -965 -965 -965 -965 -965 166 -965 -965 248 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKYGCTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 5.0e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.625000 0.000000 0.375000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKYGCTG MEME-3 regular expression -------------------------------------------------------------------------------- GC[GT][CT]GCTG -------------------------------------------------------------------------------- Time 20.02 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGCGTG MEME-4 width = 8 sites = 2 llr = 26 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGCGTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::a::: probability G aaaa:a:a matrix T ::::::a: bits 2.5 ****** * 2.2 ****** * 2.0 ****** * 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (19.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGCGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:1428496-1428616 109 1.95e-06 TATCCCCTGT GGGGCGTG CCCA chrX:1517616-1517736 31 1.95e-06 CTTAGAGATG GGGGCGTG CACATTTGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1428496-1428616 2e-06 108_[+4]_4 chrX:1517616-1517736 2e-06 30_[+4]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGCGTG width=8 seqs=2 chr2L:1428496-1428616 ( 109) GGGGCGTG 1 chrX:1517616-1517736 ( 31) GGGGCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.1e+004 -765 -765 248 -765 -765 -765 248 -765 -765 -765 248 -765 -765 -765 248 -765 -765 240 -765 -765 -765 -765 248 -765 -765 -765 -765 166 -765 -765 248 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.1e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGTG MEME-4 regular expression -------------------------------------------------------------------------------- GGGGCGTG -------------------------------------------------------------------------------- Time 26.21 secs. ******************************************************************************** ******************************************************************************** MOTIF SSGCCACC MEME-5 width = 8 sites = 15 llr = 147 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSGCCACC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::9:: pos.-specific C 43:97:7a probability G 67a1:13: matrix T ::::3::: bits 2.5 * * 2.2 * * 2.0 ** * 1.7 ** * Relative 1.5 ***** ** Entropy 1.2 ******** (14.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGCCACC consensus CC T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGCCACC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:18784697-18784817 67 4.66e-06 ttcatacggg cggccacc ccttttcttt chr3R:16349308-16349428 100 4.66e-06 CCCATATCTA CGGCCACC TAACGCTAAC chr3R:15793627-15793747 60 7.04e-06 ACAGTGGGCC GCGCCACC GCCATAGGCG chr2R:12274352-12274472 84 7.04e-06 TAAGGTCAGC GCGCCACC TGGCGACGGC chr2L:16816069-16816189 67 7.04e-06 TCAGTCGATT GCGCCACC TTGTGCGCGA chr2R:17444976-17445096 52 9.20e-06 TGCCAGTGGT GGGCCAGC ATTGTTGACT chr2L:19159257-19159377 9 1.53e-05 CACAGTCA CGGCCAGC AGTTGGTGTA chr2L:277309-277429 23 1.53e-05 AATAAGCCAG CGGCCAGC ATTGCCATAT chr3R:21270052-21270172 8 1.91e-05 GGGACCA GGGCTACC ACTACTGTTC chrX:19683490-19683610 67 1.91e-05 GATATCACTG GGGCTACC TGTCGACGAA chrX:2318517-2318637 30 2.67e-05 GATTTGTCAA CGGCTACC TGGATACCAA chr3L:5987805-5987925 110 2.81e-05 CATTGCGGTC GCGCCGCC ACT chr2R:11628146-11628266 72 4.07e-05 GTAACGAAAA CCGCCGCC AGGGGCGCTG chr3R:13448546-13448666 44 4.07e-05 TTTTATTTAT GGGCTAGC AAGACTGACA chr3R:24876005-24876125 58 4.29e-05 AAAGTTTTTG GGGGCACC GAAATGTACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGCCACC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18784697-18784817 4.7e-06 66_[+5]_46 chr3R:16349308-16349428 4.7e-06 99_[+5]_13 chr3R:15793627-15793747 7e-06 59_[+5]_53 chr2R:12274352-12274472 7e-06 83_[+5]_29 chr2L:16816069-16816189 7e-06 66_[+5]_46 chr2R:17444976-17445096 9.2e-06 51_[+5]_61 chr2L:19159257-19159377 1.5e-05 8_[+5]_104 chr2L:277309-277429 1.5e-05 22_[+5]_90 chr3R:21270052-21270172 1.9e-05 7_[+5]_105 chrX:19683490-19683610 1.9e-05 66_[+5]_46 chrX:2318517-2318637 2.7e-05 29_[+5]_83 chr3L:5987805-5987925 2.8e-05 109_[+5]_3 chr2R:11628146-11628266 4.1e-05 71_[+5]_41 chr3R:13448546-13448666 4.1e-05 43_[+5]_69 chr3R:24876005-24876125 4.3e-05 57_[+5]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGCCACC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSGCCACC width=8 seqs=15 chr3L:18784697-18784817 ( 67) CGGCCACC 1 chr3R:16349308-16349428 ( 100) CGGCCACC 1 chr3R:15793627-15793747 ( 60) GCGCCACC 1 chr2R:12274352-12274472 ( 84) GCGCCACC 1 chr2L:16816069-16816189 ( 67) GCGCCACC 1 chr2R:17444976-17445096 ( 52) GGGCCAGC 1 chr2L:19159257-19159377 ( 9) CGGCCAGC 1 chr2L:277309-277429 ( 23) CGGCCAGC 1 chr3R:21270052-21270172 ( 8) GGGCTACC 1 chrX:19683490-19683610 ( 67) GGGCTACC 1 chrX:2318517-2318637 ( 30) CGGCTACC 1 chr3L:5987805-5987925 ( 110) GCGCCGCC 1 chr2R:11628146-11628266 ( 72) CCGCCGCC 1 chr3R:13448546-13448666 ( 44) GGGCTAGC 1 chr3R:24876005-24876125 ( 58) GGGGCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGCCACC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 1.1e+004 -1055 109 175 -1055 -1055 82 190 -1055 -1055 -1055 248 -1055 -1055 231 -142 -1055 -1055 196 -1055 -24 145 -1055 -42 -1055 -1055 196 58 -1055 -1055 241 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGCCACC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.1e+004 0.000000 0.400000 0.600000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.933333 0.066667 0.000000 0.000000 0.733333 0.000000 0.266667 0.866667 0.000000 0.133333 0.000000 0.000000 0.733333 0.266667 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSGCCACC MEME-5 regular expression -------------------------------------------------------------------------------- [GC][GC]GC[CT]A[CG]C -------------------------------------------------------------------------------- Time 32.43 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:18138415-18138535 4.59e-02 21_[+2(4.24e-05)]_91 chrX:5689474-5689594 3.61e-01 120 chr2L:7811319-7811439 2.21e-01 52_[+2(6.25e-05)]_60 chr2L:4883057-4883177 1.52e-01 13_[+2(4.24e-05)]_99 chrX:1927609-1927729 8.65e-02 19_[+2(4.24e-05)]_93 chr3L:14776117-14776237 4.40e-05 38_[+1(9.90e-06)]_22_[+2(1.14e-05)]_\ 44 chr3R:30022351-30022471 1.80e-01 120 chr3R:16349308-16349428 8.35e-04 33_[+5(7.19e-05)]_58_[+5(4.66e-06)]_\ 13 chr3L:1940972-1941092 6.90e-03 56_[+2(1.14e-05)]_16_[+2(4.24e-05)]_\ 32 chrX:5689674-5689794 9.25e-01 120 chr2R:15934702-15934822 2.46e-02 3_[+2(1.14e-05)]_109 chrX:1033194-1033314 2.96e-02 30_[+2(6.25e-05)]_82 chr3R:16349538-16349658 8.09e-02 120 chr3R:15363806-15363926 7.11e-01 120 chr2R:10066582-10066702 8.24e-02 9_[+2(6.25e-05)]_103 chr2L:6338339-6338459 3.25e-04 69_[+1(9.90e-06)]_31_[+2(9.24e-05)]_\ 4 chr2R:25011484-25011604 3.82e-06 38_[+2(1.14e-05)]_23_[+1(1.59e-05)]_\ 43 chr3R:24876005-24876125 1.72e-04 57_[+5(4.29e-05)]_40_[+1(4.27e-05)]_\ 7 chrX:1927815-1927935 3.13e-01 120 chr3L:1035113-1035233 8.34e-05 21_[+2(1.14e-05)]_7_[+2(6.25e-05)]_\ 18_[+3(5.96e-06)]_50 chrX:11124737-11124857 3.38e-02 20_[+2(6.25e-05)]_92 chr3L:20221064-20221184 9.99e-01 120 chr3L:16090392-16090512 2.92e-01 120 chr2R:8156623-8156743 1.72e-03 54_[+2(4.24e-05)]_58 chrX:2447834-2447954 1.18e-01 106_[+2(1.14e-05)]_6 chrX:3538932-3539052 9.95e-01 120 chr2L:3100886-3101006 7.38e-02 65_[+3(1.60e-05)]_47 chr2R:12537581-12537701 3.88e-01 120 chr2R:10252339-10252459 3.42e-02 106_[+2(6.25e-05)]_6 chr3R:24026297-24026417 8.19e-01 120 chrX:6037614-6037734 8.58e-02 120 chr2L:6794969-6795089 2.32e-02 120 chr2L:16816069-16816189 8.49e-04 66_[+5(7.04e-06)]_46 chr2L:18694879-18694999 2.18e-02 103_[+1(1.59e-05)]_9 chr2R:21910002-21910122 5.75e-01 120 chrX:5745149-5745269 6.96e-02 120 chrX:6663287-6663407 8.85e-01 120 chr3L:6978239-6978359 9.98e-01 120 chr3L:16544366-16544486 2.20e-01 27_[+1(7.96e-05)]_85 chrX:8671519-8671639 9.97e-01 120 chrX:13128011-13128131 9.90e-01 120 chrX:16781210-16781330 6.69e-01 120 chr3R:23941707-23941827 7.51e-01 120 chr2L:3598575-3598695 2.57e-01 120 chr3R:9344965-9345085 9.33e-01 120 chr2L:1316548-1316668 9.87e-01 120 chr3R:29591708-29591828 4.28e-02 78_[+2(6.25e-05)]_34 chr2R:15931957-15932077 1.16e-01 26_[+2(6.25e-05)]_86 chr2R:12173432-12173552 7.80e-01 120 chrX:6615588-6615708 9.37e-01 120 chr3R:13448546-13448666 7.62e-02 43_[+5(4.07e-05)]_69 chrX:21323995-21324115 2.48e-03 12_[+2(1.14e-05)]_13_[+2(6.25e-05)]_\ 79 chr2L:20944491-20944611 9.68e-01 120 chrX:13630475-13630595 7.91e-01 120 chrX:3403571-3403691 9.47e-01 120 chr2L:493438-493558 9.98e-01 120 chr3R:23387041-23387161 9.90e-01 120 chr3R:6818678-6818798 3.87e-01 120 chr2R:17444976-17445096 7.53e-03 51_[+5(9.20e-06)]_61 chrX:11846474-11846594 7.59e-01 120 chr2L:14376938-14377058 9.64e-01 120 chrX:5604325-5604445 4.01e-01 120 chrX:5889142-5889262 9.80e-01 120 chr3R:26853754-26853874 1.24e-06 3_[+3(9.58e-06)]_46_[+1(4.21e-06)]_\ 55 chrX:19494467-19494587 1.44e-02 70_[+1(1.95e-05)]_42 chr3L:5926058-5926178 5.05e-02 14_[+1(1.59e-05)]_98 chr3R:21850341-21850461 1.61e-03 103_[+1(9.90e-06)]_9 chr2R:21527439-21527559 9.95e-01 120 chr2L:3856530-3856650 6.75e-01 120 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chr3R:31395375-31395495 1.83e-01 120 chr3R:5998446-5998566 1.03e-01 17_[+2(4.24e-05)]_95 chr3R:8819613-8819733 5.54e-02 120 chr3R:30191644-30191764 6.92e-01 120 chr2R:15835660-15835780 2.05e-01 120 chr3L:3853022-3853142 3.83e-01 91_[+3(8.89e-05)]_21 chr3L:12803811-12803931 9.95e-01 120 chr2R:14362956-14363076 1.03e-02 29_[+2(1.14e-05)]_83 chr2L:8982786-8982906 9.60e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************