******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG16815.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:7953115-7953235 1.0000 120 chrX:7166485-7166605 1.0000 120 chr3R:14586542-14586662 1.0000 120 chr3L:17949757-17949877 1.0000 120 chr3L:20447531-20447651 1.0000 120 chr2R:20126704-20126824 1.0000 120 chr3R:31689919-31690039 1.0000 120 chr2R:20027214-20027334 1.0000 120 chr3R:31704656-31704776 1.0000 120 chr3L:19179545-19179665 1.0000 120 chr3L:15199363-15199483 1.0000 120 chr3L:5017654-5017774 1.0000 120 chr3R:30734703-30734823 1.0000 120 chr3L:18225062-18225182 1.0000 120 chr2L:7293643-7293763 1.0000 120 chr3L:14971976-14972096 1.0000 120 chrX:5604301-5604421 1.0000 120 chr3L:905150-905270 1.0000 120 chr3L:15794464-15794584 1.0000 120 chr3R:10626164-10626284 1.0000 120 chr2R:1345288-1345408 1.0000 120 chr3R:27826295-27826415 1.0000 120 chr3R:29541545-29541665 1.0000 120 chrX:9615613-9615733 1.0000 120 chr3R:10354084-10354204 1.0000 120 chr3R:20829572-20829692 1.0000 120 chr3R:8072771-8072891 1.0000 120 chr2L:6540187-6540307 1.0000 120 chr3L:13403118-13403238 1.0000 120 chr2L:18505670-18505790 1.0000 120 chr3L:15321077-15321197 1.0000 120 chr3R:10651061-10651181 1.0000 120 chr3R:19935360-19935480 1.0000 120 chrX:19323225-19323345 1.0000 120 chr2L:9996708-9996828 1.0000 120 chr3R:8197272-8197392 1.0000 120 chrX:5564086-5564206 1.0000 120 chr3L:22665184-22665304 1.0000 120 chr3R:8336332-8336452 1.0000 120 chr3L:15253700-15253820 1.0000 120 chrX:14583385-14583505 1.0000 120 chrX:457991-458111 1.0000 120 chr3R:23300715-23300835 1.0000 120 chr3L:19674441-19674561 1.0000 120 chr3R:28805280-28805400 1.0000 120 chr3R:22878555-22878675 1.0000 120 chr2R:16096964-16097084 1.0000 120 chrX:17471779-17471899 1.0000 120 chr3R:31696846-31696966 1.0000 120 chrX:19785015-19785135 1.0000 120 chr3R:22260401-22260521 1.0000 120 chrX:3073740-3073860 1.0000 120 chr3R:24544433-24544553 1.0000 120 chr3R:13469350-13469470 1.0000 120 chr3L:12673024-12673144 1.0000 120 chr2L:6819517-6819637 1.0000 120 chr3L:3978064-3978184 1.0000 120 chr3R:17049134-17049254 1.0000 120 chr3R:14386276-14386396 1.0000 120 chrX:8671771-8671891 1.0000 120 chr2L:3776077-3776197 1.0000 120 chr2L:19219576-19219696 1.0000 120 chr3L:14166390-14166510 1.0000 120 chr3L:18225262-18225382 1.0000 120 chr2L:11980159-11980279 1.0000 120 chrX:8671560-8671680 1.0000 120 chr3R:4400108-4400228 1.0000 120 chr2R:20091313-20091433 1.0000 120 chr3L:15672948-15673068 1.0000 120 chr2R:20326977-20327097 1.0000 120 chrX:18208642-18208762 1.0000 120 chr2L:21035800-21035920 1.0000 120 chr3L:627848-627968 1.0000 120 chr3R:15580855-15580975 1.0000 120 chr3L:10847916-10848036 1.0000 120 chr3L:11306276-11306396 1.0000 120 chr3L:11306483-11306603 1.0000 120 chr3R:31706309-31706429 1.0000 120 chr2L:1145099-1145219 1.0000 120 chr2L:18150731-18150851 1.0000 120 chr3L:21463002-21463122 1.0000 120 chrX:20644220-20644340 1.0000 120 chr2L:11338376-11338496 1.0000 120 chr3L:11278783-11278903 1.0000 120 chr2R:8242199-8242319 1.0000 120 chr3L:14613839-14613959 1.0000 120 chr3R:8784924-8785044 1.0000 120 chr3L:11414633-11414753 1.0000 120 chr3R:19339386-19339506 1.0000 120 chr3R:23297642-23297762 1.0000 120 chr3L:15847731-15847851 1.0000 120 chr3R:29265279-29265399 1.0000 120 chr3L:6059217-6059337 1.0000 120 chr2R:22886242-22886362 1.0000 120 chr2L:18871898-18872018 1.0000 120 chrX:10825536-10825656 1.0000 120 chr3R:13405005-13405125 1.0000 120 chr2R:14971269-14971389 1.0000 120 chr3R:16907924-16908044 1.0000 120 chr3R:15650514-15650634 1.0000 120 chr2R:21364837-21364957 1.0000 120 chr2L:3600969-3601089 1.0000 120 chr3R:21612970-21613090 1.0000 120 chr3L:14613014-14613134 1.0000 120 chr3R:11758797-11758917 1.0000 120 chr3R:9494346-9494466 1.0000 120 chrX:3367418-3367538 1.0000 120 chr2L:1427930-1428050 1.0000 120 chr3L:6981923-6982043 1.0000 120 chr2L:11189211-11189331 1.0000 120 chr2R:10077777-10077897 1.0000 120 chr2R:5128360-5128480 1.0000 120 chr3R:29581569-29581689 1.0000 120 chr3L:15670589-15670709 1.0000 120 chrX:17780421-17780541 1.0000 120 chr3R:6353006-6353126 1.0000 120 chr3L:3449863-3449983 1.0000 120 chr3L:18349446-18349566 1.0000 120 chr2L:7616923-7617043 1.0000 120 chr2R:21706460-21706580 1.0000 120 chrX:13320800-13320920 1.0000 120 chr3R:9675120-9675240 1.0000 120 chr3R:11617467-11617587 1.0000 120 chr2L:7295111-7295231 1.0000 120 chr3L:13068435-13068555 1.0000 120 chr2L:18484822-18484942 1.0000 120 chr2L:19141054-19141174 1.0000 120 chr2L:9448873-9448993 1.0000 120 chr2R:15835547-15835667 1.0000 120 chr3R:21887658-21887778 1.0000 120 chr3R:21993078-21993198 1.0000 120 chrX:3396933-3397053 1.0000 120 chr3R:24318563-24318683 1.0000 120 chr2R:5122274-5122394 1.0000 120 chr3R:8849430-8849550 1.0000 120 chrX:17510680-17510800 1.0000 120 chrX:15591971-15592091 1.0000 120 chr3L:16768413-16768533 1.0000 120 chr2L:18566744-18566864 1.0000 120 chr2L:1473621-1473741 1.0000 120 chr3L:5857058-5857178 1.0000 120 chr2R:16091932-16092052 1.0000 120 chr3R:30263839-30263959 1.0000 120 chr2L:1462198-1462318 1.0000 120 chr3R:19274246-19274366 1.0000 120 chr3L:13403329-13403449 1.0000 120 chr3L:11336553-11336673 1.0000 120 chr2R:23578553-23578673 1.0000 120 chr3R:23303349-23303469 1.0000 120 chrX:17782140-17782260 1.0000 120 chr2L:3587377-3587497 1.0000 120 chr2R:11094476-11094596 1.0000 120 chr3L:19899063-19899183 1.0000 120 chr3L:3873263-3873383 1.0000 120 chr2L:18930881-18931001 1.0000 120 chr3R:23345109-23345229 1.0000 120 chr3R:17540157-17540277 1.0000 120 chr3L:18250855-18250975 1.0000 120 chr2L:5278668-5278788 1.0000 120 chrX:15120206-15120326 1.0000 120 chr2L:7270392-7270512 1.0000 120 chr3R:15652723-15652843 1.0000 120 chr3L:19636962-19637082 1.0000 120 chr3L:1414147-1414267 1.0000 120 chrX:7901633-7901753 1.0000 120 chr3L:6969298-6969418 1.0000 120 chr3R:6791235-6791355 1.0000 120 chr3R:16704359-16704479 1.0000 120 chr2R:11809516-11809636 1.0000 120 chr3R:29772407-29772527 1.0000 120 chr3R:8349418-8349538 1.0000 120 chr3L:16544350-16544470 1.0000 120 chrX:18552481-18552601 1.0000 120 chrX:3068453-3068573 1.0000 120 chr3R:5861509-5861629 1.0000 120 chrX:16386009-16386129 1.0000 120 chr2L:7532779-7532899 1.0000 120 chr3R:15547879-15547999 1.0000 120 chr3L:745673-745793 1.0000 120 chr2L:9594969-9595089 1.0000 120 chr3R:21187182-21187302 1.0000 120 chr2L:19377524-19377644 1.0000 120 chrX:7571333-7571453 1.0000 120 chr3L:1568771-1568891 1.0000 120 chr3L:14978125-14978245 1.0000 120 chr4:1181896-1182016 1.0000 120 chr3R:28599612-28599732 1.0000 120 chr3L:3855326-3855446 1.0000 120 chr3L:6220295-6220415 1.0000 120 chr3R:10641368-10641488 1.0000 120 chr2L:8415462-8415582 1.0000 120 chr3L:20630729-20630849 1.0000 120 chr2R:18202751-18202871 1.0000 120 chr3R:8744299-8744419 1.0000 120 chr3L:907790-907910 1.0000 120 chr3R:15644933-15645053 1.0000 120 chr2R:14645105-14645225 1.0000 120 chr3R:13799621-13799741 1.0000 120 chr3R:5660258-5660378 1.0000 120 chr2L:11066169-11066289 1.0000 120 chr3R:10628440-10628560 1.0000 120 chrX:3690651-3690771 1.0000 120 chr2L:1629703-1629823 1.0000 120 chr3L:8399219-8399339 1.0000 120 chr2L:3477392-3477512 1.0000 120 chr3L:18297475-18297595 1.0000 120 chr3R:18311165-18311285 1.0000 120 chr2L:11044769-11044889 1.0000 120 chr2L:838146-838266 1.0000 120 chr2L:7313582-7313702 1.0000 120 chr2L:11417602-11417722 1.0000 120 chr2L:12351079-12351199 1.0000 120 chrX:2136484-2136604 1.0000 120 chr3R:25184076-25184196 1.0000 120 chr2L:14441029-14441149 1.0000 120 chrX:6109997-6110117 1.0000 120 chr3R:14470790-14470910 1.0000 120 chrX:16967541-16967661 1.0000 120 chr2R:6524213-6524333 1.0000 120 chr2L:3882285-3882405 1.0000 120 chr2R:20319511-20319631 1.0000 120 chr2R:18209859-18209979 1.0000 120 chr2L:12542128-12542248 1.0000 120 chr2L:18305194-18305314 1.0000 120 chr3R:19165080-19165200 1.0000 120 chr3R:6760974-6761094 1.0000 120 chr2L:5238304-5238424 1.0000 120 chr3L:3875161-3875281 1.0000 120 chr2L:3598587-3598707 1.0000 120 chr3R:27440683-27440803 1.0000 120 chr3L:9028178-9028298 1.0000 120 chr3R:16209075-16209195 1.0000 120 chr2L:14376911-14377031 1.0000 120 chr3L:15235253-15235373 1.0000 120 chr2L:8471823-8471943 1.0000 120 chr3R:23293518-23293638 1.0000 120 chr3R:27988720-27988840 1.0000 120 chr2L:1207623-1207743 1.0000 120 chr3L:22277393-22277513 1.0000 120 chr2R:9935966-9936086 1.0000 120 chrX:14743888-14744008 1.0000 120 chr3R:21850272-21850392 1.0000 120 chr2L:19376327-19376447 1.0000 120 chr2R:15034853-15034973 1.0000 120 chrX:15890324-15890444 1.0000 120 chr2R:8045164-8045284 1.0000 120 chr2L:3861474-3861594 1.0000 120 chr3R:4846932-4847052 1.0000 120 chrX:5329448-5329568 1.0000 120 chr3R:31064757-31064877 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG16815/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG16815.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.349 C 0.159 G 0.151 T 0.34 Background letter frequencies (from file dataset with add-one prior applied): A 0.349 C 0.159 G 0.151 T 0.34 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF KYWCASTG MEME-1 width = 8 sites = 42 llr = 353 E-value = 1.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif KYWCASTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::3:a::: pos.-specific C 24:a:5:: probability G 3:2::5:a matrix T 565:::a: bits 2.7 * * 2.5 * * 2.2 * * 1.9 * * Relative 1.6 ***** Entropy 1.4 ***** (12.1 bits) 1.1 * ***** 0.8 * ***** 0.5 ** ***** 0.3 ******** 0.0 -------- Multilevel TTTCACTG consensus GCA G sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYWCASTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:13799621-13799741 53 1.04e-05 TGTTGCCCTC GCTCACTG AGAGAAATGG chr2R:14645105-14645225 35 1.04e-05 AAGCACACAG GCGCACTG TGGCGTTTTA chr3L:22277393-22277513 85 3.39e-05 GGAAGTGTTC TCGCAGTG TATCACTCTA chrX:2136484-2136604 31 3.39e-05 CTTTTCTTTT TCTCAGTG TAACGACTAA chr2L:12351079-12351199 95 3.39e-05 TCTTAGTTGT TCTCAGTG TACTTGCATC chr3R:15644933-15645053 55 3.39e-05 CCACTATTTC TCTCAGTG CACAGATGGA chr3L:3873263-3873383 102 3.39e-05 AAAATATTTT TCTCAGTG CCCGTGCTGA chr3L:18349446-18349566 92 3.39e-05 TAAGTTTTTA TCTCAGTG TGTGTCAATG chr3R:19339386-19339506 82 3.39e-05 ATAGAATTTT TCGCAGTG CACTAGCTTA chr3R:29541545-29541665 102 3.39e-05 AAATATTTTC TCTCAGTG CACATAACAG chr2L:9594969-9595089 10 5.61e-05 TGCTAGAGT GTGCACTG AAGAAAAATa chr3L:6969298-6969418 33 5.61e-05 CATTAAATTA GTTCAGTG AGAATTTAAA chr3L:3449863-3449983 98 5.61e-05 TAATTCGATT GTTCAGTG CCTTTTTTAA chr3R:13469350-13469470 17 5.61e-05 GTGTACCAAA GTGCACTG TAAAAAATAT chr3R:10626164-10626284 104 5.61e-05 GTGTTTCAAA GTGCACTG AATCTGGTC chr3L:14971976-14972096 102 5.61e-05 TCGAGCGAAT GTTCACTG TACTCGAAAG chr2L:14376911-14377031 51 7.45e-05 GAAAGAAAGT CCTCAGtg tccgtagtgt chr2R:20319511-20319631 33 7.45e-05 ATTTTATTGT GCACACTG AAAGAATAAC chr3L:6220295-6220415 49 7.45e-05 TTACTGACTT GCACAGTG AGGCAAGTCC chr3L:16544350-16544470 50 7.45e-05 ACATGCATGA GCACAGTG AGTAATTAAT chr2L:18566744-18566864 77 7.45e-05 AATACAATAG CCTCAGTG GTTGTATAAT chr3L:905150-905270 104 7.45e-05 CATAGCCAGT CCTCACTG TCGACCCCT chr2R:18209859-18209979 77 1.25e-04 TTGTGATTTT TTTCAGTG CACTCACGCA chr3R:28599612-28599732 100 1.25e-04 CCACATAGAT TTTCAGTG GAAACAAGTG chrX:7901633-7901753 1 1.25e-04 . TTGCACTG ATTCATCAAA chr2R:11094476-11094596 82 1.25e-04 CAACACTTTC TTTCAGTG TACTACAGTG chr3L:19674441-19674561 22 1.25e-04 ATAGTTTACA TTTCACTG ATTAACTTAT chr3R:8197272-8197392 112 1.25e-04 CACCTATTTC TTTCAGTG C chr3R:30734703-30734823 7 1.25e-04 CATATC TTTCAGTG CACCTGAAGA chr2L:3598587-3598707 4 1.41e-04 GGA TCACACTG CACGAAAAGA chr3R:14470790-14470910 97 1.41e-04 CTTCTATTTT TCACAGTG TAAGATTGGA chr2L:11066169-11066289 72 1.81e-04 TCTTTCGAGG CTTCACTG TGCCCACGCG chrX:18552481-18552601 2 1.81e-04 G CTGCACTG GAAACAATTT chr2L:18930881-18931001 7 1.81e-04 CATTAA CTGCACTG GAAAAAACAC chr2L:18150731-18150851 37 1.81e-04 AGCAGCGCAA GTACAGTG AAGCCTAAGC chr3L:13403118-13403238 17 1.81e-04 TTGATATGCG GTACACTG AGAGAAATAC chr3R:25184076-25184196 15 2.24e-04 GCACACAGTC TTACACTG GAAAAAATCT chr3R:23303349-23303469 6 2.24e-04 CACTA TTACACTG AACACAATAT chrX:8671771-8671891 33 2.24e-04 ATGGTATGGG TTACACTG TAAGAATATA chr2L:18505670-18505790 75 2.24e-04 TCAAAATAAT TTACACTG TTTGATTTGG chr2L:19377524-19377644 42 2.41e-04 TCCGCTGCAA CTACACTG AGAGAAATTT chr3L:22665184-22665304 22 2.41e-04 AGCCACAGTC CTACACTG AAAGTCAACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYWCASTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:13799621-13799741 1e-05 52_[+1]_60 chr2R:14645105-14645225 1e-05 34_[+1]_78 chr3L:22277393-22277513 3.4e-05 84_[+1]_28 chrX:2136484-2136604 3.4e-05 30_[+1]_82 chr2L:12351079-12351199 3.4e-05 94_[+1]_18 chr3R:15644933-15645053 3.4e-05 54_[+1]_58 chr3L:3873263-3873383 3.4e-05 101_[+1]_11 chr3L:18349446-18349566 3.4e-05 91_[+1]_21 chr3R:19339386-19339506 3.4e-05 81_[+1]_31 chr3R:29541545-29541665 3.4e-05 101_[+1]_11 chr2L:9594969-9595089 5.6e-05 9_[+1]_103 chr3L:6969298-6969418 5.6e-05 32_[+1]_80 chr3L:3449863-3449983 5.6e-05 97_[+1]_15 chr3R:13469350-13469470 5.6e-05 16_[+1]_96 chr3R:10626164-10626284 5.6e-05 103_[+1]_9 chr3L:14971976-14972096 5.6e-05 101_[+1]_11 chr2L:14376911-14377031 7.4e-05 50_[+1]_62 chr2R:20319511-20319631 7.4e-05 32_[+1]_80 chr3L:6220295-6220415 7.4e-05 48_[+1]_64 chr3L:16544350-16544470 7.4e-05 49_[+1]_63 chr2L:18566744-18566864 7.4e-05 76_[+1]_36 chr3L:905150-905270 7.4e-05 103_[+1]_9 chr2R:18209859-18209979 0.00012 76_[+1]_36 chr3R:28599612-28599732 0.00012 99_[+1]_13 chrX:7901633-7901753 0.00012 [+1]_112 chr2R:11094476-11094596 0.00012 81_[+1]_31 chr3L:19674441-19674561 0.00012 21_[+1]_91 chr3R:8197272-8197392 0.00012 111_[+1]_1 chr3R:30734703-30734823 0.00012 6_[+1]_106 chr2L:3598587-3598707 0.00014 3_[+1]_109 chr3R:14470790-14470910 0.00014 96_[+1]_16 chr2L:11066169-11066289 0.00018 71_[+1]_41 chrX:18552481-18552601 0.00018 1_[+1]_111 chr2L:18930881-18931001 0.00018 6_[+1]_106 chr2L:18150731-18150851 0.00018 36_[+1]_76 chr3L:13403118-13403238 0.00018 16_[+1]_96 chr3R:25184076-25184196 0.00022 14_[+1]_98 chr3R:23303349-23303469 0.00022 5_[+1]_107 chrX:8671771-8671891 0.00022 32_[+1]_80 chr2L:18505670-18505790 0.00022 74_[+1]_38 chr2L:19377524-19377644 0.00024 41_[+1]_71 chr3L:22665184-22665304 0.00024 21_[+1]_91 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYWCASTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KYWCASTG width=8 seqs=42 chr3R:13799621-13799741 ( 53) GCTCACTG 1 chr2R:14645105-14645225 ( 35) GCGCACTG 1 chr3L:22277393-22277513 ( 85) TCGCAGTG 1 chrX:2136484-2136604 ( 31) TCTCAGTG 1 chr2L:12351079-12351199 ( 95) TCTCAGTG 1 chr3R:15644933-15645053 ( 55) TCTCAGTG 1 chr3L:3873263-3873383 ( 102) TCTCAGTG 1 chr3L:18349446-18349566 ( 92) TCTCAGTG 1 chr3R:19339386-19339506 ( 82) TCGCAGTG 1 chr3R:29541545-29541665 ( 102) TCTCAGTG 1 chr2L:9594969-9595089 ( 10) GTGCACTG 1 chr3L:6969298-6969418 ( 33) GTTCAGTG 1 chr3L:3449863-3449983 ( 98) GTTCAGTG 1 chr3R:13469350-13469470 ( 17) GTGCACTG 1 chr3R:10626164-10626284 ( 104) GTGCACTG 1 chr3L:14971976-14972096 ( 102) GTTCACTG 1 chr2L:14376911-14377031 ( 51) CCTCAGTG 1 chr2R:20319511-20319631 ( 33) GCACACTG 1 chr3L:6220295-6220415 ( 49) GCACAGTG 1 chr3L:16544350-16544470 ( 50) GCACAGTG 1 chr2L:18566744-18566864 ( 77) CCTCAGTG 1 chr3L:905150-905270 ( 104) CCTCACTG 1 chr2R:18209859-18209979 ( 77) TTTCAGTG 1 chr3R:28599612-28599732 ( 100) TTTCAGTG 1 chrX:7901633-7901753 ( 1) TTGCACTG 1 chr2R:11094476-11094596 ( 82) TTTCAGTG 1 chr3L:19674441-19674561 ( 22) TTTCACTG 1 chr3R:8197272-8197392 ( 112) TTTCAGTG 1 chr3R:30734703-30734823 ( 7) TTTCAGTG 1 chr2L:3598587-3598707 ( 4) TCACACTG 1 chr3R:14470790-14470910 ( 97) TCACAGTG 1 chr2L:11066169-11066289 ( 72) CTTCACTG 1 chrX:18552481-18552601 ( 2) CTGCACTG 1 chr2L:18930881-18931001 ( 7) CTGCACTG 1 chr2L:18150731-18150851 ( 37) GTACAGTG 1 chr3L:13403118-13403238 ( 17) GTACACTG 1 chr3R:25184076-25184196 ( 15) TTACACTG 1 chr3R:23303349-23303469 ( 6) TTACACTG 1 chrX:8671771-8671891 ( 33) TTACACTG 1 chr2L:18505670-18505790 ( 75) TTACACTG 1 chr2L:19377524-19377644 ( 42) CTACACTG 1 chr3L:22665184-22665304 ( 22) CTACACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYWCASTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3789 E= 1.7e-001 -1204 26 103 55 -1204 143 -1204 75 -18 -1204 50 48 -1204 265 -1204 -1204 152 -1204 -1204 -1204 -1204 165 173 -1204 -1204 -1204 -1204 155 -1204 -1204 273 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYWCASTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 1.7e-001 0.000000 0.190476 0.309524 0.500000 0.000000 0.428571 0.000000 0.571429 0.309524 0.000000 0.214286 0.476190 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYWCASTG MEME-1 regular expression -------------------------------------------------------------------------------- [TG][TC][TAG]CA[CG]TG -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF GGKGGCGC MEME-2 width = 8 sites = 2 llr = 28 E-value = 5.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGKGGCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::a:a probability G aa5aa:a: matrix T ::5::::: bits 2.7 ** ***** 2.5 ** ***** 2.2 ** ***** 1.9 ** ***** Relative 1.6 ** ***** Entropy 1.4 ** ***** (20.1 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGGGCGC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16967541-16967661 91 3.00e-07 GCACTCGGCA GGGGGCGC CACAACGACG chrX:6109997-6110117 105 9.74e-07 GCGGACGCCA GGTGGCGC CACACATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16967541-16967661 3e-07 90_[+2]_22 chrX:6109997-6110117 9.7e-07 104_[+2]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGKGGCGC width=8 seqs=2 chrX:16967541-16967661 ( 91) GGGGGCGC 1 chrX:6109997-6110117 ( 105) GGTGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 5.4e+003 -765 -765 272 -765 -765 -765 272 -765 -765 -765 172 55 -765 -765 272 -765 -765 -765 272 -765 -765 265 -765 -765 -765 -765 272 -765 -765 265 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.4e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGCGC MEME-2 regular expression -------------------------------------------------------------------------------- GG[GT]GGCGC -------------------------------------------------------------------------------- Time 13.63 secs. ******************************************************************************** ******************************************************************************** MOTIF TCGGCGGS MEME-3 width = 8 sites = 4 llr = 52 E-value = 1.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGGCGGS MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :8::a::5 probability G :3aa:aa5 matrix T a::::::: bits 2.7 ***** 2.5 ***** 2.2 ***** 1.9 ****** Relative 1.6 ******** Entropy 1.4 ******** (18.7 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TCGGCGGC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCGGS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:22277393-22277513 113 1.39e-06 AGGAAAACTA TCGGCGGG chrX:6109997-6110117 47 1.39e-06 TACTTGTTTA TCGGCGGC GTCTCTCGCG chr2L:3587377-3587497 13 1.39e-06 TGTTCGGCGT TCGGCGGC TTTTTACCGC chr2R:15034853-15034973 69 2.70e-06 TAGTCGAAGC TGGGCGGG AATTATCTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCGGS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:22277393-22277513 1.4e-06 112_[+3] chrX:6109997-6110117 1.4e-06 46_[+3]_66 chr2L:3587377-3587497 1.4e-06 12_[+3]_100 chr2R:15034853-15034973 2.7e-06 68_[+3]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCGGS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGGCGGS width=8 seqs=4 chr3L:22277393-22277513 ( 113) TCGGCGGG 1 chrX:6109997-6110117 ( 47) TCGGCGGC 1 chr2L:3587377-3587497 ( 13) TCGGCGGC 1 chr2R:15034853-15034973 ( 69) TGGGCGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCGGS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.5228 E= 1.0e+003 -865 -865 -865 155 -865 224 72 -865 -865 -865 272 -865 -865 -865 272 -865 -865 265 -865 -865 -865 -865 272 -865 -865 -865 272 -865 -865 165 172 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCGGS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.0e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGCGGS MEME-3 regular expression -------------------------------------------------------------------------------- T[CG]GGCGG[CG] -------------------------------------------------------------------------------- Time 19.74 secs. ******************************************************************************** ******************************************************************************** MOTIF YCTGGCGC MEME-4 width = 8 sites = 8 llr = 89 E-value = 3.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCTGGCGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1::::::: pos.-specific C 49::3a:8 probability G :1:a8:a3 matrix T 5:a::::: bits 2.7 * ** 2.5 * ** 2.2 * * ** 1.9 * ***** Relative 1.6 ******* Entropy 1.4 ******* (16.1 bits) 1.1 ******* 0.8 ******* 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TCTGGCGC consensus C C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTGGCGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16967541-16967661 44 7.48e-07 AGTGTGCCCG CCTGGCGC TTGAGGCGCC chr3L:8399219-8399339 76 2.35e-06 TGCATATCTC TCTGGCGC TTCACCATCT chr2L:11417602-11417722 3 3.85e-06 GA CCTGCCGC AAATACACTG chr2L:21035800-21035920 61 3.85e-06 TATTGTTCAG CCTGCCGC ACGAAAGGAT chr3L:907790-907910 76 5.37e-06 ATTATAGCAT TCTGGCGG AGTTAATACA chr3R:31696846-31696966 106 5.37e-06 CTAATGACAC TCTGGCGG TAGTGGA chr3L:14166390-14166510 5 9.40e-06 ATTG ACTGGCGC GACTATCAGA chrX:7166485-7166605 112 1.17e-05 GTGCGCCTAC TGTGGCGC A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTGGCGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16967541-16967661 7.5e-07 43_[+4]_69 chr3L:8399219-8399339 2.3e-06 75_[+4]_37 chr2L:11417602-11417722 3.8e-06 2_[+4]_110 chr2L:21035800-21035920 3.8e-06 60_[+4]_52 chr3L:907790-907910 5.4e-06 75_[+4]_37 chr3R:31696846-31696966 5.4e-06 105_[+4]_7 chr3L:14166390-14166510 9.4e-06 4_[+4]_108 chrX:7166485-7166605 1.2e-05 111_[+4]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTGGCGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCTGGCGC width=8 seqs=8 chrX:16967541-16967661 ( 44) CCTGGCGC 1 chr3L:8399219-8399339 ( 76) TCTGGCGC 1 chr2L:11417602-11417722 ( 3) CCTGCCGC 1 chr2L:21035800-21035920 ( 61) CCTGCCGC 1 chr3L:907790-907910 ( 76) TCTGGCGG 1 chr3R:31696846-31696966 ( 106) TCTGGCGG 1 chr3L:14166390-14166510 ( 5) ACTGGCGC 1 chrX:7166485-7166605 ( 112) TGTGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTGGCGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 3.0e+003 -148 124 -965 55 -965 246 -27 -965 -965 -965 -965 155 -965 -965 272 -965 -965 65 231 -965 -965 265 -965 -965 -965 -965 272 -965 -965 224 72 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTGGCGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 3.0e+003 0.125000 0.375000 0.000000 0.500000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTGGCGC MEME-4 regular expression -------------------------------------------------------------------------------- [TC]CTG[GC]CG[CG] -------------------------------------------------------------------------------- Time 25.90 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGSASGC MEME-5 width = 8 sites = 3 llr = 39 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGSASGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C :a:3:7:a probability G a:a7:3a: matrix T :::::::: bits 2.7 *** ** 2.5 *** ** 2.2 *** ** 1.9 **** ** Relative 1.6 ******** Entropy 1.4 ******** (18.5 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGGACGC consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGSASGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6109997-6110117 95 7.29e-07 GCTTCAGCCA GCGGACGC CAGGTGGCGC chr3R:5660258-5660378 24 1.42e-06 TGTGTAACTA GCGGAGGC AAAGTACATT chr2R:18202751-18202871 88 2.19e-06 AACTGTGAAT GCGCACGC TCCGCGTTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGSASGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6109997-6110117 7.3e-07 94_[+5]_18 chr3R:5660258-5660378 1.4e-06 23_[+5]_89 chr2R:18202751-18202871 2.2e-06 87_[+5]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGSASGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGSASGC width=8 seqs=3 chrX:6109997-6110117 ( 95) GCGGACGC 1 chr3R:5660258-5660378 ( 24) GCGGAGGC 1 chr2R:18202751-18202871 ( 88) GCGCACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGSASGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 1.2e+004 -823 -823 272 -823 -823 265 -823 -823 -823 -823 272 -823 -823 107 214 -823 151 -823 -823 -823 -823 207 114 -823 -823 -823 272 -823 -823 265 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGSASGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.2e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGSASGC MEME-5 regular expression -------------------------------------------------------------------------------- GCG[GC]A[CG]GC -------------------------------------------------------------------------------- Time 32.03 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7953115-7953235 1.00e+00 120 chrX:7166485-7166605 2.17e-04 111_[+4(1.17e-05)]_1 chr3R:14586542-14586662 1.00e+00 120 chr3L:17949757-17949877 7.17e-01 120 chr3L:20447531-20447651 8.89e-01 120 chr2R:20126704-20126824 7.15e-01 120 chr3R:31689919-31690039 5.21e-01 120 chr2R:20027214-20027334 5.85e-01 120 chr3R:31704656-31704776 9.97e-01 120 chr3L:19179545-19179665 9.99e-01 120 chr3L:15199363-15199483 8.18e-01 120 chr3L:5017654-5017774 9.21e-01 120 chr3R:30734703-30734823 3.09e-01 120 chr3L:18225062-18225182 9.89e-01 120 chr2L:7293643-7293763 3.34e-01 120 chr3L:14971976-14972096 1.32e-02 101_[+1(5.61e-05)]_11 chrX:5604301-5604421 1.26e-01 120 chr3L:905150-905270 5.05e-02 103_[+1(7.45e-05)]_9 chr3L:15794464-15794584 7.52e-01 120 chr3R:10626164-10626284 2.49e-01 103_[+1(5.61e-05)]_9 chr2R:1345288-1345408 2.34e-01 120 chr3R:27826295-27826415 3.02e-01 120 chr3R:29541545-29541665 3.96e-02 101_[+1(3.39e-05)]_11 chrX:9615613-9615733 9.72e-01 120 chr3R:10354084-10354204 9.14e-01 120 chr3R:20829572-20829692 1.00e+00 120 chr3R:8072771-8072891 1.55e-01 120 chr2L:6540187-6540307 9.11e-01 120 chr3L:13403118-13403238 1.82e-01 120 chr2L:18505670-18505790 6.80e-03 120 chr3L:15321077-15321197 9.98e-01 120 chr3R:10651061-10651181 3.70e-01 120 chr3R:19935360-19935480 4.02e-01 120 chrX:19323225-19323345 1.31e-01 120 chr2L:9996708-9996828 7.10e-01 120 chr3R:8197272-8197392 5.44e-02 120 chrX:5564086-5564206 1.67e-01 120 chr3L:22665184-22665304 2.32e-02 120 chr3R:8336332-8336452 2.97e-01 120 chr3L:15253700-15253820 7.68e-01 120 chrX:14583385-14583505 2.96e-01 120 chrX:457991-458111 6.77e-01 120 chr3R:23300715-23300835 1.00e+00 120 chr3L:19674441-19674561 3.38e-01 120 chr3R:28805280-28805400 1.86e-01 120 chr3R:22878555-22878675 4.77e-01 120 chr2R:16096964-16097084 8.62e-01 120 chrX:17471779-17471899 1.69e-02 98_[+5(7.44e-06)]_14 chr3R:31696846-31696966 1.63e-03 105_[+4(5.37e-06)]_7 chrX:19785015-19785135 2.11e-01 120 chr3R:22260401-22260521 5.81e-02 120 chrX:3073740-3073860 3.88e-01 120 chr3R:24544433-24544553 7.52e-01 120 chr3R:13469350-13469470 1.46e-01 16_[+1(5.61e-05)]_96 chr3L:12673024-12673144 8.77e-01 120 chr2L:6819517-6819637 9.29e-01 120 chr3L:3978064-3978184 1.00e+00 120 chr3R:17049134-17049254 3.17e-01 120 chr3R:14386276-14386396 5.90e-01 120 chrX:8671771-8671891 2.14e-01 120 chr2L:3776077-3776197 7.09e-01 120 chr2L:19219576-19219696 5.25e-01 120 chr3L:14166390-14166510 1.59e-03 4_[+4(9.40e-06)]_108 chr3L:18225262-18225382 1.52e-01 120 chr2L:11980159-11980279 9.99e-01 120 chrX:8671560-8671680 4.34e-01 120 chr3R:4400108-4400228 7.80e-01 120 chr2R:20091313-20091433 3.15e-01 120 chr3L:15672948-15673068 2.93e-02 120 chr2R:20326977-20327097 9.95e-01 120 chrX:18208642-18208762 1.00e+00 120 chr2L:21035800-21035920 3.12e-03 60_[+4(3.85e-06)]_52 chr3L:627848-627968 4.29e-01 120 chr3R:15580855-15580975 7.50e-01 120 chr3L:10847916-10848036 9.99e-01 120 chr3L:11306276-11306396 6.48e-01 120 chr3L:11306483-11306603 9.51e-01 120 chr3R:31706309-31706429 1.34e-01 120 chr2L:1145099-1145219 4.55e-01 120 chr2L:18150731-18150851 2.30e-04 120 chr3L:21463002-21463122 1.00e+00 120 chrX:20644220-20644340 3.18e-01 120 chr2L:11338376-11338496 9.58e-01 120 chr3L:11278783-11278903 7.98e-02 120 chr2R:8242199-8242319 5.13e-01 120 chr3L:14613839-14613959 1.29e-02 42_[+4(8.26e-05)]_70 chr3R:8784924-8785044 9.98e-01 120 chr3L:11414633-11414753 6.10e-01 120 chr3R:19339386-19339506 7.35e-02 81_[+1(3.39e-05)]_31 chr3R:23297642-23297762 9.40e-01 120 chr3L:15847731-15847851 1.61e-01 120 chr3R:29265279-29265399 5.65e-01 120 chr3L:6059217-6059337 8.99e-02 120 chr2R:22886242-22886362 6.67e-01 120 chr2L:18871898-18872018 8.53e-01 120 chrX:10825536-10825656 6.18e-02 120 chr3R:13405005-13405125 9.03e-01 120 chr2R:14971269-14971389 8.06e-01 120 chr3R:16907924-16908044 8.57e-01 120 chr3R:15650514-15650634 6.08e-01 120 chr2R:21364837-21364957 9.43e-01 120 chr2L:3600969-3601089 7.90e-01 120 chr3R:21612970-21613090 9.72e-01 120 chr3L:14613014-14613134 9.86e-01 120 chr3R:11758797-11758917 1.00e+00 120 chr3R:9494346-9494466 9.17e-01 120 chrX:3367418-3367538 6.31e-01 120 chr2L:1427930-1428050 1.00e+00 120 chr3L:6981923-6982043 3.87e-01 120 chr2L:11189211-11189331 8.98e-01 120 chr2R:10077777-10077897 9.98e-01 120 chr2R:5128360-5128480 5.53e-01 120 chr3R:29581569-29581689 5.91e-01 120 chr3L:15670589-15670709 9.73e-01 120 chrX:17780421-17780541 3.65e-01 120 chr3R:6353006-6353126 4.87e-01 120 chr3L:3449863-3449983 6.32e-03 97_[+1(5.61e-05)]_15 chr3L:18349446-18349566 2.85e-02 91_[+1(3.39e-05)]_21 chr2L:7616923-7617043 3.33e-01 120 chr2R:21706460-21706580 1.90e-01 120 chrX:13320800-13320920 1.00e+00 120 chr3R:9675120-9675240 1.00e+00 120 chr3R:11617467-11617587 8.87e-01 120 chr2L:7295111-7295231 3.61e-01 120 chr3L:13068435-13068555 9.61e-01 120 chr2L:18484822-18484942 6.63e-01 120 chr2L:19141054-19141174 1.77e-01 120 chr2L:9448873-9448993 7.56e-01 120 chr2R:15835547-15835667 4.06e-01 120 chr3R:21887658-21887778 1.76e-01 120 chr3R:21993078-21993198 2.95e-01 120 chrX:3396933-3397053 1.95e-02 120 chr3R:24318563-24318683 4.17e-01 120 chr2R:5122274-5122394 3.89e-02 12_[+3(5.84e-05)]_100 chr3R:8849430-8849550 1.41e-01 120 chrX:17510680-17510800 8.06e-01 120 chrX:15591971-15592091 2.07e-01 120 chr3L:16768413-16768533 5.65e-01 120 chr2L:18566744-18566864 4.27e-03 76_[+1(7.45e-05)]_36 chr2L:1473621-1473741 6.68e-01 120 chr3L:5857058-5857178 8.80e-01 120 chr2R:16091932-16092052 8.09e-01 120 chr3R:30263839-30263959 6.79e-01 120 chr2L:1462198-1462318 3.64e-01 120 chr3R:19274246-19274366 5.86e-01 120 chr3L:13403329-13403449 1.00e+00 120 chr3L:11336553-11336673 5.76e-01 120 chr2R:23578553-23578673 9.49e-01 120 chr3R:23303349-23303469 6.85e-01 120 chrX:17782140-17782260 7.90e-01 120 chr2L:3587377-3587497 4.60e-05 12_[+3(1.39e-06)]_100 chr2R:11094476-11094596 4.86e-03 120 chr3L:19899063-19899183 9.92e-01 120 chr3L:3873263-3873383 3.04e-02 101_[+1(3.39e-05)]_11 chr2L:18930881-18931001 2.17e-01 120 chr3R:23345109-23345229 9.95e-01 120 chr3R:17540157-17540277 8.50e-01 120 chr3L:18250855-18250975 9.97e-01 120 chr2L:5278668-5278788 9.73e-01 120 chrX:15120206-15120326 2.45e-01 120 chr2L:7270392-7270512 8.70e-01 120 chr3R:15652723-15652843 6.16e-01 120 chr3L:19636962-19637082 1.00e+00 120 chr3L:1414147-1414267 2.96e-01 120 chrX:7901633-7901753 3.79e-01 120 chr3L:6969298-6969418 1.99e-01 32_[+1(5.61e-05)]_80 chr3R:6791235-6791355 9.99e-01 120 chr3R:16704359-16704479 5.46e-02 120 chr2R:11809516-11809636 8.71e-01 120 chr3R:29772407-29772527 7.54e-01 120 chr3R:8349418-8349538 1.16e-01 120 chr3L:16544350-16544470 2.97e-01 49_[+1(7.45e-05)]_63 chrX:18552481-18552601 7.28e-03 120 chrX:3068453-3068573 1.24e-02 120 chr3R:5861509-5861629 2.18e-01 120 chrX:16386009-16386129 2.44e-01 120 chr2L:7532779-7532899 9.99e-01 120 chr3R:15547879-15547999 1.23e-02 120 chr3L:745673-745793 9.94e-01 120 chr2L:9594969-9595089 1.88e-01 9_[+1(5.61e-05)]_103 chr3R:21187182-21187302 9.87e-01 120 chr2L:19377524-19377644 4.25e-02 120 chrX:7571333-7571453 9.99e-01 120 chr3L:1568771-1568891 2.73e-01 120 chr3L:14978125-14978245 9.86e-01 120 chr4:1181896-1182016 9.52e-01 120 chr3R:28599612-28599732 1.06e-01 120 chr3L:3855326-3855446 8.66e-01 120 chr3L:6220295-6220415 1.33e-01 48_[+1(7.45e-05)]_64 chr3R:10641368-10641488 3.17e-01 120 chr2L:8415462-8415582 9.48e-01 120 chr3L:20630729-20630849 1.21e-01 120 chr2R:18202751-18202871 2.45e-03 87_[+5(2.19e-06)]_25 chr3R:8744299-8744419 4.32e-01 120 chr3L:907790-907910 1.42e-04 75_[+4(5.37e-06)]_37 chr3R:15644933-15645053 3.93e-04 54_[+1(3.39e-05)]_58 chr2R:14645105-14645225 1.65e-04 34_[+1(1.04e-05)]_78 chr3R:13799621-13799741 7.08e-05 52_[+1(1.04e-05)]_60 chr3R:5660258-5660378 5.69e-05 23_[+5(1.42e-06)]_89 chr2L:11066169-11066289 2.12e-04 80_[+5(8.14e-05)]_[+2(8.70e-05)]_24 chr3R:10628440-10628560 1.00e+00 120 chrX:3690651-3690771 4.45e-02 120 chr2L:1629703-1629823 2.30e-01 120 chr3L:8399219-8399339 1.55e-04 75_[+4(2.35e-06)]_37 chr2L:3477392-3477512 8.12e-01 120 chr3L:18297475-18297595 9.58e-01 120 chr3R:18311165-18311285 9.99e-01 120 chr2L:11044769-11044889 1.73e-03 38_[+3(6.53e-05)]_74 chr2L:838146-838266 3.00e-01 120 chr2L:7313582-7313702 3.67e-01 120 chr2L:11417602-11417722 3.65e-03 2_[+4(3.85e-06)]_110 chr2L:12351079-12351199 1.74e-02 94_[+1(3.39e-05)]_18 chrX:2136484-2136604 4.21e-04 30_[+1(3.39e-05)]_16_[+5(6.84e-05)]_\ 58 chr3R:25184076-25184196 1.62e-02 120 chr2L:14441029-14441149 3.13e-01 120 chrX:6109997-6110117 2.07e-10 46_[+3(1.39e-06)]_40_[+5(7.29e-07)]_\ 2_[+2(9.74e-07)]_8 chr3R:14470790-14470910 5.26e-01 120 chrX:16967541-16967661 1.50e-09 43_[+4(7.48e-07)]_1_[+2(7.86e-05)]_\ 7_[+3(9.49e-05)]_15_[+2(3.00e-07)]_22 chr2R:6524213-6524333 8.22e-01 120 chr2L:3882285-3882405 9.90e-01 120 chr2R:20319511-20319631 3.45e-03 32_[+1(7.45e-05)]_80 chr2R:18209859-18209979 6.65e-02 120 chr2L:12542128-12542248 1.00e+00 120 chr2L:18305194-18305314 9.82e-01 120 chr3R:19165080-19165200 8.58e-01 120 chr3R:6760974-6761094 1.77e-02 120 chr2L:5238304-5238424 1.00e+00 120 chr3L:3875161-3875281 4.26e-01 120 chr2L:3598587-3598707 5.39e-02 120 chr3R:27440683-27440803 1.73e-02 120 chr3L:9028178-9028298 2.09e-01 120 chr3R:16209075-16209195 1.00e+00 120 chr2L:14376911-14377031 6.44e-02 50_[+1(7.45e-05)]_62 chr3L:15235253-15235373 1.57e-01 120 chr2L:8471823-8471943 6.70e-01 120 chr3R:23293518-23293638 9.94e-01 120 chr3R:27988720-27988840 5.86e-01 120 chr2L:1207623-1207743 3.10e-01 120 chr3L:22277393-22277513 1.61e-04 84_[+1(3.39e-05)]_20_[+3(1.39e-06)] chr2R:9935966-9936086 3.16e-01 120 chrX:14743888-14744008 9.77e-01 120 chr3R:21850272-21850392 1.01e-02 92_[+5(6.03e-05)]_20 chr2L:19376327-19376447 1.77e-01 120 chr2R:15034853-15034973 2.12e-04 68_[+3(2.70e-06)]_44 chrX:15890324-15890444 7.82e-01 120 chr2R:8045164-8045284 9.76e-01 120 chr2L:3861474-3861594 6.55e-01 120 chr3R:4846932-4847052 2.10e-01 120 chrX:5329448-5329568 9.51e-01 120 chr3R:31064757-31064877 5.15e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n05.farnam.hpc.yale.internal ********************************************************************************