******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG16779.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:13524765-13524885 1.0000 120 chr2L:20673879-20673999 1.0000 120 chr3R:30005489-30005609 1.0000 120 chr3R:30326774-30326894 1.0000 120 chr3L:18080152-18080272 1.0000 120 chrX:20468366-20468486 1.0000 120 chr2R:7472473-7472593 1.0000 120 chr2R:21182827-21182947 1.0000 120 chr3L:9847101-9847221 1.0000 120 chr3L:11634697-11634817 1.0000 120 chr2L:7189787-7189907 1.0000 120 chr2R:19157702-19157822 1.0000 120 chrM:12849-12969 1.0000 120 chr3L:5579927-5580047 1.0000 120 chr2L:8002339-8002459 1.0000 120 chr3L:18783608-18783728 1.0000 120 chr2L:9949233-9949353 1.0000 120 chr3L:5943654-5943774 1.0000 120 chr2R:15906092-15906212 1.0000 120 chrM:4702-4822 1.0000 120 chr3R:21948828-21948948 1.0000 120 chr2R:17682205-17682325 1.0000 120 chr3R:30014038-30014158 1.0000 120 chr3R:28831735-28831855 1.0000 120 chr3R:12406793-12406913 1.0000 120 chr2R:13023076-13023196 1.0000 120 chrX:9344245-9344365 1.0000 120 chr3L:9357976-9358096 1.0000 120 chr2R:10847402-10847522 1.0000 120 chrX:17488569-17488689 1.0000 120 chr3R:20556858-20556978 1.0000 120 chr3R:5231745-5231865 1.0000 120 chrX:19485218-19485338 1.0000 120 chr2R:22596900-22597020 1.0000 120 chr2L:8007287-8007407 1.0000 120 chr2R:18879207-18879327 1.0000 120 chrX:11522092-11522212 1.0000 120 chr3L:9367581-9367701 1.0000 120 chrM:5988-6108 1.0000 120 chr2R:22571971-22572091 1.0000 120 chr2L:9231880-9232000 1.0000 120 chrX:9139277-9139397 1.0000 120 chr2L:18831340-18831460 1.0000 120 chr3L:16002540-16002660 1.0000 120 chr3R:21024283-21024403 1.0000 120 chr3R:23734988-23735108 1.0000 120 chr3L:9335726-9335846 1.0000 120 chr3R:8939825-8939945 1.0000 120 chr2L:16590487-16590607 1.0000 120 chr3L:18621726-18621846 1.0000 120 chr3R:23728234-23728354 1.0000 120 chrX:17726088-17726208 1.0000 120 chr3R:21587606-21587726 1.0000 120 chr3R:9389098-9389218 1.0000 120 chr2R:11651128-11651248 1.0000 120 chr3L:19091777-19091897 1.0000 120 chr2R:12946367-12946487 1.0000 120 chr3L:16886568-16886688 1.0000 120 chr3R:8971962-8972082 1.0000 120 chr2L:524549-524669 1.0000 120 chr2R:13478521-13478641 1.0000 120 chrX:20166803-20166923 1.0000 120 chrX:3189913-3190033 1.0000 120 chr2R:18313165-18313285 1.0000 120 chr2L:7971512-7971632 1.0000 120 chr3L:5551130-5551250 1.0000 120 chr3L:7835379-7835499 1.0000 120 chrX:17732217-17732337 1.0000 120 chr3L:12515718-12515838 1.0000 120 chr2R:13994597-13994717 1.0000 120 chrX:13644777-13644897 1.0000 120 chrX:6632037-6632157 1.0000 120 chr2R:15848601-15848721 1.0000 120 chr3L:4068533-4068653 1.0000 120 chr2R:10572204-10572324 1.0000 120 chrX:19359270-19359390 1.0000 120 chr3R:26464506-26464626 1.0000 120 chr2R:23432146-23432266 1.0000 120 chr3R:23763888-23764008 1.0000 120 chr2R:21389306-21389426 1.0000 120 chr3L:21237145-21237265 1.0000 120 chrX:21055214-21055334 1.0000 120 chr2R:22586977-22587097 1.0000 120 chr3R:14557580-14557700 1.0000 120 chr2L:121628-121748 1.0000 120 chrX:2742208-2742328 1.0000 120 chrX:1908956-1909076 1.0000 120 chr2L:18752162-18752282 1.0000 120 chr3L:2553239-2553359 1.0000 120 chr2R:19697466-19697586 1.0000 120 chr3L:11557326-11557446 1.0000 120 chr3R:10588814-10588934 1.0000 120 chr3L:11789137-11789257 1.0000 120 chr3R:13647092-13647212 1.0000 120 chr2L:2806345-2806465 1.0000 120 chr2R:21495537-21495657 1.0000 120 chrX:7194779-7194899 1.0000 120 chr2L:9333453-9333573 1.0000 120 chrX:13936355-13936475 1.0000 120 chr3L:11284343-11284463 1.0000 120 chr3L:12915620-12915740 1.0000 120 chr3L:2817992-2818112 1.0000 120 chr3R:27706164-27706284 1.0000 120 chr3L:19234520-19234640 1.0000 120 chr2R:18355960-18356080 1.0000 120 chr3L:17238298-17238418 1.0000 120 chr2L:7207812-7207932 1.0000 120 chr3R:25493942-25494062 1.0000 120 chr2R:18566188-18566308 1.0000 120 chr3R:7075034-7075154 1.0000 120 chr2R:6159876-6159996 1.0000 120 chr2R:6869667-6869787 1.0000 120 chr2R:7533863-7533983 1.0000 120 chr3R:10093561-10093681 1.0000 120 chr2R:22545260-22545380 1.0000 120 chr2L:4028118-4028238 1.0000 120 chr3R:27929340-27929460 1.0000 120 chr3R:22140183-22140303 1.0000 120 chr3R:11646994-11647114 1.0000 120 chr2R:21543354-21543474 1.0000 120 chr2L:7879659-7879779 1.0000 120 chr3L:8358227-8358347 1.0000 120 chr3L:6155263-6155383 1.0000 120 chr3R:20784921-20785041 1.0000 120 chrM:11260-11380 1.0000 120 chrX:8159084-8159204 1.0000 120 chrX:13285273-13285393 1.0000 120 chr3R:26535799-26535919 1.0000 120 chrX:13406441-13406561 1.0000 120 chrX:10932358-10932478 1.0000 120 chr3R:10189625-10189745 1.0000 120 chr3L:2428816-2428936 1.0000 120 chr2R:17396014-17396134 1.0000 120 chr3R:21938525-21938645 1.0000 120 chr2L:13545882-13546002 1.0000 120 chr3L:3420426-3420546 1.0000 120 chr3L:2873233-2873353 1.0000 120 chrX:6708209-6708329 1.0000 120 chr2R:13957717-13957837 1.0000 120 chrX:18483640-18483760 1.0000 120 chr2L:12055953-12056073 1.0000 120 chrX:12672792-12672912 1.0000 120 chrX:21045478-21045598 1.0000 120 chr2L:3159124-3159244 1.0000 120 chr3R:20007844-20007964 1.0000 120 chr3L:13435319-13435439 1.0000 120 chr3R:16253122-16253242 1.0000 120 chr3R:21630541-21630661 1.0000 120 chr2R:11690675-11690795 1.0000 120 chr3R:23386199-23386319 1.0000 120 chr2L:5618098-5618218 1.0000 120 chr3L:6266236-6266356 1.0000 120 chr3L:10365080-10365200 1.0000 120 chr3L:21894887-21895007 1.0000 120 chr2R:20996663-20996783 1.0000 120 chr2L:20674092-20674212 1.0000 120 chr2R:18314663-18314783 1.0000 120 chr2R:10558239-10558359 1.0000 120 chr3L:10352240-10352360 1.0000 120 chr3L:10680960-10681080 1.0000 120 chr3L:19295010-19295130 1.0000 120 chr3R:19074326-19074446 1.0000 120 chr2R:18746888-18747008 1.0000 120 chr3L:8822076-8822196 1.0000 120 chr2R:14569630-14569750 1.0000 120 chr3L:21122795-21122915 1.0000 120 chr2R:10474722-10474842 1.0000 120 chr2L:19156105-19156225 1.0000 120 chr3L:20914534-20914654 1.0000 120 chr2R:23306081-23306201 1.0000 120 chr2L:6447693-6447813 1.0000 120 chr2R:12279474-12279594 1.0000 120 chr3L:18221435-18221555 1.0000 120 chrX:13747759-13747879 1.0000 120 chr2R:9133413-9133533 1.0000 120 chr3R:17706520-17706640 1.0000 120 chr2R:17435700-17435820 1.0000 120 chrX:8592774-8592894 1.0000 120 chr2L:16588911-16589031 1.0000 120 chr3L:8013990-8014110 1.0000 120 chr2R:14081682-14081802 1.0000 120 chr3L:18790999-18791119 1.0000 120 chr2R:11364929-11365049 1.0000 120 chr3R:9950012-9950132 1.0000 120 chr2R:14082365-14082485 1.0000 120 chr2R:7758962-7759082 1.0000 120 chr2R:11205396-11205516 1.0000 120 chr3R:14007668-14007788 1.0000 120 chrX:2334705-2334825 1.0000 120 chr3L:1810375-1810495 1.0000 120 chrX:11710480-11710600 1.0000 120 chr3R:30822028-30822148 1.0000 120 chr3L:2805666-2805786 1.0000 120 chr3L:11368547-11368667 1.0000 120 chrX:18544904-18545024 1.0000 120 chrM:12170-12290 1.0000 120 chr3R:29280808-29280928 1.0000 120 chrM:13222-13342 1.0000 120 chr3R:27194159-27194279 1.0000 120 chr2R:11178243-11178363 1.0000 120 chr2R:22554062-22554182 1.0000 120 chr2L:11516733-11516853 1.0000 120 chr2R:11323990-11324110 1.0000 120 chr2R:17439612-17439732 1.0000 120 chr3L:1861462-1861582 1.0000 120 chr3R:26496454-26496574 1.0000 120 chr3R:21195710-21195830 1.0000 120 chr3R:24283702-24283822 1.0000 120 chr2R:11366578-11366698 1.0000 120 chr3R:15091793-15091913 1.0000 120 chr3R:7651141-7651261 1.0000 120 chr3R:14020667-14020787 1.0000 120 chr3L:9848937-9849057 1.0000 120 chr2L:13893591-13893711 1.0000 120 chr2L:8009453-8009573 1.0000 120 chr2L:2888819-2888939 1.0000 120 chrX:7540828-7540948 1.0000 120 chr2R:19617273-19617393 1.0000 120 chr2L:7910127-7910247 1.0000 120 chr3L:7993719-7993839 1.0000 120 chr2L:7790673-7790793 1.0000 120 chrX:13238633-13238753 1.0000 120 chr2R:21386700-21386820 1.0000 120 chr3L:16190971-16191091 1.0000 120 chrX:12890471-12890591 1.0000 120 chr2L:2804674-2804794 1.0000 120 chr3R:20286216-20286336 1.0000 120 chr2R:11384148-11384268 1.0000 120 chrX:10266152-10266272 1.0000 120 chr3L:2835920-2836040 1.0000 120 chr2L:2802705-2802825 1.0000 120 chrX:7290967-7291087 1.0000 120 chr3R:9237413-9237533 1.0000 120 chr2L:18457121-18457241 1.0000 120 chr3R:22754607-22754727 1.0000 120 chr3L:21025144-21025264 1.0000 120 chrX:17886900-17887020 1.0000 120 chr3R:31768342-31768462 1.0000 120 chr3L:1653012-1653132 1.0000 120 chr2L:1125708-1125828 1.0000 120 chrX:20159073-20159193 1.0000 120 chrX:1612045-1612165 1.0000 120 chr2R:17811087-17811207 1.0000 120 chr3L:3817086-3817206 1.0000 120 chr3R:8792705-8792825 1.0000 120 chrX:15079368-15079488 1.0000 120 chr2L:18122303-18122423 1.0000 120 chr3R:24614250-24614370 1.0000 120 chr2R:24955794-24955914 1.0000 120 chrX:1119359-1119479 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG16779/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG16779.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.294 C 0.207 G 0.21 T 0.289 Background letter frequencies (from file dataset with add-one prior applied): A 0.294 C 0.207 G 0.21 T 0.289 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTT MEME-1 width = 8 sites = 79 llr = 655 E-value = 2.7e-036 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::2:::: pos.-specific C :1:1:1:: probability G ::::3::: matrix T a9a779aa bits 2.3 2.0 1.8 * * ** 1.6 *** *** Relative 1.4 *** *** Entropy 1.1 *** **** (12.0 bits) 0.9 *** **** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15079368-15079488 94 4.87e-05 TTATTTCCTT TTTTTTTT CGTACTGCTT chr3R:8792705-8792825 90 4.87e-05 TTCGTTTTAC TTTTTTTT CATGCCCACC chr3R:9237413-9237533 50 4.87e-05 GTTTGCGGCT TTTTTTTT TATCAATTTG chrX:7290967-7291087 41 4.87e-05 cctttttcct tttttttt cctttgtgtt chr3R:15091793-15091913 50 4.87e-05 ttttatactt tttttttt attttatttt chr2R:11178243-11178363 90 4.87e-05 TGCttttttc tttttttt gtttttgtat chr3L:2805666-2805786 113 4.87e-05 GTTTTTTGCA TTTTTTTT chr3R:30822028-30822148 68 4.87e-05 GCTTTTTGTC TTTTTTTT aaccaaccaa chr3R:14007668-14007788 70 4.87e-05 TTTGTAGTAT TTTTTTTT TAATGAATAT chr2R:12279474-12279594 46 4.87e-05 GGGTTTTTTG TTTTTTTT GGGTTGCTTA chr2L:19156105-19156225 43 4.87e-05 GGCTGGCAGT TTTTTTTT CTTTTTGCGC chr2R:10474722-10474842 30 4.87e-05 TAAGATCTTG TTTTTTTT TTCTTTTCGC chr2R:14569630-14569750 13 4.87e-05 ttatttgttt tttttttt tgctttgtgg chr3L:10352240-10352360 55 4.87e-05 ctcatcttgc tttttttt cctttttttt chr2R:18314663-18314783 61 4.87e-05 ACTTCTGTTT TTTTTTTT GCCATGCAGC chr3R:16253122-16253242 37 4.87e-05 AAACTCGACT TTTTTTTT TGCTTCTACT chr3L:6155263-6155383 35 4.87e-05 GTTTCGtttt tttttttt aattgttttt chr2R:21543354-21543474 86 4.87e-05 tgtgtttttt tttttttt GAAACGTGAG chr2R:18355960-18356080 32 4.87e-05 TCTATTTTTC TTTTTTTT GCGACAAATG chr3R:10588814-10588934 96 4.87e-05 ATTTTGTTTT TTTTTTTT CTCTTATTTT chrX:2742208-2742328 2 4.87e-05 T TTTTTTTT TTCTGGACTT chr3R:14557580-14557700 32 4.87e-05 tattattatt tttttttt ttttgtagta chrX:6632037-6632157 52 4.87e-05 ggtttgcttt tttttttt tgtgtgtctt chr2L:7971512-7971632 96 4.87e-05 ACTGTAACTA TTTTTTTT ATTTAATTTT chr3R:8971962-8972082 83 4.87e-05 TTGATACCTC TTTTTTTT TTGCGTCGTT chr3R:23728234-23728354 48 4.87e-05 tttcatttat tttttttt tttttttctt chr3L:16002540-16002660 102 4.87e-05 TTTTCTCAAC TTTTTTTT ACGTTTTTTA chr2R:13023076-13023196 57 4.87e-05 CGCACACGTC tttttttt tgtttttttt chr2R:17682205-17682325 19 4.87e-05 TGTGTATATA TTTTTTTT AATGAATAAT chr3L:5943654-5943774 97 4.87e-05 ttttttttct tttttttt ttGGTTGCAT chr2R:21182827-21182947 104 4.87e-05 GATGCATAAT TTTTTTTT AAATTTATT chr3L:18080152-18080272 88 4.87e-05 GCTTTTTTTT TTTTTTTT TTGTGAAAAT chr3R:30326774-30326894 86 4.87e-05 tattattttt tttttttt attttCCTCT chr3R:30005489-30005609 45 4.87e-05 ttctttttca tttttttt ttCGTTGCAT chrX:11710480-11710600 43 8.40e-05 ATGAGTtttg ttttgttt tgtttcttcc chr3L:18790999-18791119 113 8.40e-05 CTATTTTGCT TTTTGTTT chr3L:13435319-13435439 53 8.40e-05 ACAGACAGCG TTTTGTTT TTGCTTTCTG chr2L:3159124-3159244 4 8.40e-05 ttt ttttgttt ttcttcttgt chrX:21045478-21045598 74 8.40e-05 CGCCGTTCGT TTTTGTTT TTGTTGTTCT chr2R:17396014-17396134 62 8.40e-05 TTTTCTCTGT TTTTGTTT AGACTTTGCT chr3R:10189625-10189745 55 8.40e-05 GGCTGCTTTA TTTTGTTT CTTCTTGTTT chr3R:22140183-22140303 102 8.40e-05 ttgttttttg ttttgttt ttATTTCGTT chr3R:10093561-10093681 38 8.40e-05 GCTAGATAGT TTTTGTTT GCGTCATGTG chrX:7194779-7194899 45 8.40e-05 GCGTCCAGTT TTTTGTTT TCTTTGATTC chr3L:2553239-2553359 18 8.40e-05 tttcgttttg ttttgttt tgttatgtta chr2R:23432146-23432266 67 8.40e-05 GCGTCTCACG TTTTGTTT TCTTCTTATT chrX:17726088-17726208 39 8.40e-05 TGTGCTTCTT ttttgttt tgtttcgact chr2R:18879207-18879327 21 8.40e-05 TGAAATTCGC TTTTGTTT TATGATTTTC chr3R:24614250-24614370 66 1.34e-04 GTACAGCTCC TTTATTTT TTTGTGGCAG chr3L:21025144-21025264 43 1.34e-04 TTCTGCTCtt tttatttt ggatttttat chr3L:16190971-16191091 113 1.34e-04 ATTATTTCAT TTTATTTT chrX:13238633-13238753 27 1.34e-04 CCGCTAAAAA TTTATTTT TCAACTTCAA chr2L:5618098-5618218 75 1.34e-04 TGGGCCACAT TTTATTTT GCTTTTTGTT chr3L:2873233-2873353 78 1.34e-04 TATTATTTTC TTTATTTT TTGTGGCACA chr3R:21938525-21938645 86 1.34e-04 tCATTTACTT TTTATTTT CGTACAGTCA chr2R:22545260-22545380 38 1.34e-04 GAACGGTGGC TTTATTTT TAGAACGGTA chr3L:2817992-2818112 8 1.34e-04 TTTCTTA TTTATTTT TTTGGCGAGT chr2R:22586977-22587097 34 1.34e-04 TTTATATTTT TTTATTTT TCGCATGGGC chr2R:13478521-13478641 63 1.34e-04 TCCTTAGCAT TTTATTTT CTACACCAAT chrX:19485218-19485338 32 1.34e-04 ttctttcttg tttatttt cctgtttttt chr3R:28831735-28831855 23 1.34e-04 ATTTTTTGCG TTTATTTT CGTGCACTGC chrX:6708209-6708329 83 1.68e-04 TTCTCTTCTT TTTCTTTT TTGGGATATG chr3L:19234520-19234640 98 1.68e-04 TGTGCTCTCT TTTCTTTT GCAGCTGTGT chr2L:121628-121748 10 1.68e-04 TTACTCCAC TTTCTTTT TGTAGTTGCT chr3L:12515718-12515838 51 1.68e-04 TTTTGGTTCG TTTCTTTT TGTTAGTTTT chr3L:9847101-9847221 83 1.68e-04 TGTGTTTTTA TTTCTTTT CATGAATGAA chr3L:2835920-2836040 104 2.04e-04 AAAACTCGTT TTTAGTTt gttgctgtt chr2L:9333453-9333573 106 2.04e-04 TTGATTTCGA TTTAGTTT CTAGTAC chrX:1119359-1119479 75 2.65e-04 GACTGTGCAA TTTTTCTT TCAGTGCACC chr2R:14081682-14081802 11 2.65e-04 TGAATTTACA TTTTTCTT TAAAAACCAT chr3L:3420426-3420546 57 2.65e-04 cttcgcttcg tttcgttt cgcttcgtCT chr2L:7879659-7879779 53 2.65e-04 CGTTTTTATC TTTCGTTT TTCGGTTTCT chr3L:21122795-21122915 13 2.99e-04 ATTCTTGTGA TCTTTTTT TCCCCTGTAA chr2R:18566188-18566308 87 2.99e-04 CCTGCCTCTC TCTTTTTT CTCATCCTGG chrM:12849-12969 93 2.99e-04 GAGGTCGCAA TCTTTTTT ATCGATATGA chr3R:21195710-21195830 68 3.25e-04 ACACAGGTTG TTTTGCTT TCTTCTCGTT chrX:13285273-13285393 69 3.25e-04 GCTCATTCTC TTTTGCTT GTTGATTCGC chr2R:10572204-10572324 1 3.25e-04 . TTTTGCTT ATCACAAGCC chr3R:9950012-9950132 69 3.50e-04 tctatgcatc tctTGTTT TTGGCATGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15079368-15079488 4.9e-05 93_[+1]_19 chr3R:8792705-8792825 4.9e-05 89_[+1]_23 chr3R:9237413-9237533 4.9e-05 49_[+1]_63 chrX:7290967-7291087 4.9e-05 40_[+1]_72 chr3R:15091793-15091913 4.9e-05 49_[+1]_63 chr2R:11178243-11178363 4.9e-05 89_[+1]_23 chr3L:2805666-2805786 4.9e-05 112_[+1] chr3R:30822028-30822148 4.9e-05 67_[+1]_45 chr3R:14007668-14007788 4.9e-05 69_[+1]_43 chr2R:12279474-12279594 4.9e-05 45_[+1]_67 chr2L:19156105-19156225 4.9e-05 42_[+1]_70 chr2R:10474722-10474842 4.9e-05 29_[+1]_83 chr2R:14569630-14569750 4.9e-05 12_[+1]_100 chr3L:10352240-10352360 4.9e-05 54_[+1]_58 chr2R:18314663-18314783 4.9e-05 60_[+1]_52 chr3R:16253122-16253242 4.9e-05 36_[+1]_76 chr3L:6155263-6155383 4.9e-05 34_[+1]_78 chr2R:21543354-21543474 4.9e-05 85_[+1]_27 chr2R:18355960-18356080 4.9e-05 31_[+1]_81 chr3R:10588814-10588934 4.9e-05 95_[+1]_17 chrX:2742208-2742328 4.9e-05 1_[+1]_111 chr3R:14557580-14557700 4.9e-05 31_[+1]_81 chrX:6632037-6632157 4.9e-05 51_[+1]_61 chr2L:7971512-7971632 4.9e-05 95_[+1]_17 chr3R:8971962-8972082 4.9e-05 82_[+1]_30 chr3R:23728234-23728354 4.9e-05 47_[+1]_65 chr3L:16002540-16002660 4.9e-05 101_[+1]_11 chr2R:13023076-13023196 4.9e-05 56_[+1]_56 chr2R:17682205-17682325 4.9e-05 18_[+1]_94 chr3L:5943654-5943774 4.9e-05 96_[+1]_16 chr2R:21182827-21182947 4.9e-05 103_[+1]_9 chr3L:18080152-18080272 4.9e-05 87_[+1]_25 chr3R:30326774-30326894 4.9e-05 85_[+1]_27 chr3R:30005489-30005609 4.9e-05 44_[+1]_68 chrX:11710480-11710600 8.4e-05 42_[+1]_70 chr3L:18790999-18791119 8.4e-05 112_[+1] chr3L:13435319-13435439 8.4e-05 52_[+1]_60 chr2L:3159124-3159244 8.4e-05 3_[+1]_109 chrX:21045478-21045598 8.4e-05 73_[+1]_39 chr2R:17396014-17396134 8.4e-05 61_[+1]_51 chr3R:10189625-10189745 8.4e-05 54_[+1]_58 chr3R:22140183-22140303 8.4e-05 101_[+1]_11 chr3R:10093561-10093681 8.4e-05 37_[+1]_75 chrX:7194779-7194899 8.4e-05 44_[+1]_68 chr3L:2553239-2553359 8.4e-05 17_[+1]_95 chr2R:23432146-23432266 8.4e-05 66_[+1]_46 chrX:17726088-17726208 8.4e-05 38_[+1]_74 chr2R:18879207-18879327 8.4e-05 20_[+1]_92 chr3R:24614250-24614370 0.00013 65_[+1]_47 chr3L:21025144-21025264 0.00013 42_[+1]_70 chr3L:16190971-16191091 0.00013 112_[+1] chrX:13238633-13238753 0.00013 26_[+1]_86 chr2L:5618098-5618218 0.00013 74_[+1]_38 chr3L:2873233-2873353 0.00013 77_[+1]_35 chr3R:21938525-21938645 0.00013 85_[+1]_27 chr2R:22545260-22545380 0.00013 37_[+1]_75 chr3L:2817992-2818112 0.00013 7_[+1]_105 chr2R:22586977-22587097 0.00013 33_[+1]_79 chr2R:13478521-13478641 0.00013 62_[+1]_50 chrX:19485218-19485338 0.00013 31_[+1]_81 chr3R:28831735-28831855 0.00013 22_[+1]_90 chrX:6708209-6708329 0.00017 82_[+1]_30 chr3L:19234520-19234640 0.00017 97_[+1]_15 chr2L:121628-121748 0.00017 9_[+1]_103 chr3L:12515718-12515838 0.00017 50_[+1]_62 chr3L:9847101-9847221 0.00017 82_[+1]_30 chr3L:2835920-2836040 0.0002 103_[+1]_9 chr2L:9333453-9333573 0.0002 105_[+1]_7 chrX:1119359-1119479 0.00026 74_[+1]_38 chr2R:14081682-14081802 0.00026 10_[+1]_102 chr3L:3420426-3420546 0.00026 56_[+1]_56 chr2L:7879659-7879779 0.00026 52_[+1]_60 chr3L:21122795-21122915 0.0003 12_[+1]_100 chr2R:18566188-18566308 0.0003 86_[+1]_26 chrM:12849-12969 0.0003 92_[+1]_20 chr3R:21195710-21195830 0.00032 67_[+1]_45 chrX:13285273-13285393 0.00032 68_[+1]_44 chr2R:10572204-10572324 0.00032 [+1]_112 chr3R:9950012-9950132 0.00035 68_[+1]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTT width=8 seqs=79 chrX:15079368-15079488 ( 94) TTTTTTTT 1 chr3R:8792705-8792825 ( 90) TTTTTTTT 1 chr3R:9237413-9237533 ( 50) TTTTTTTT 1 chrX:7290967-7291087 ( 41) TTTTTTTT 1 chr3R:15091793-15091913 ( 50) TTTTTTTT 1 chr2R:11178243-11178363 ( 90) TTTTTTTT 1 chr3L:2805666-2805786 ( 113) TTTTTTTT 1 chr3R:30822028-30822148 ( 68) TTTTTTTT 1 chr3R:14007668-14007788 ( 70) TTTTTTTT 1 chr2R:12279474-12279594 ( 46) TTTTTTTT 1 chr2L:19156105-19156225 ( 43) TTTTTTTT 1 chr2R:10474722-10474842 ( 30) TTTTTTTT 1 chr2R:14569630-14569750 ( 13) TTTTTTTT 1 chr3L:10352240-10352360 ( 55) TTTTTTTT 1 chr2R:18314663-18314783 ( 61) TTTTTTTT 1 chr3R:16253122-16253242 ( 37) TTTTTTTT 1 chr3L:6155263-6155383 ( 35) TTTTTTTT 1 chr2R:21543354-21543474 ( 86) TTTTTTTT 1 chr2R:18355960-18356080 ( 32) TTTTTTTT 1 chr3R:10588814-10588934 ( 96) TTTTTTTT 1 chrX:2742208-2742328 ( 2) TTTTTTTT 1 chr3R:14557580-14557700 ( 32) TTTTTTTT 1 chrX:6632037-6632157 ( 52) TTTTTTTT 1 chr2L:7971512-7971632 ( 96) TTTTTTTT 1 chr3R:8971962-8972082 ( 83) TTTTTTTT 1 chr3R:23728234-23728354 ( 48) TTTTTTTT 1 chr3L:16002540-16002660 ( 102) TTTTTTTT 1 chr2R:13023076-13023196 ( 57) TTTTTTTT 1 chr2R:17682205-17682325 ( 19) TTTTTTTT 1 chr3L:5943654-5943774 ( 97) TTTTTTTT 1 chr2R:21182827-21182947 ( 104) TTTTTTTT 1 chr3L:18080152-18080272 ( 88) TTTTTTTT 1 chr3R:30326774-30326894 ( 86) TTTTTTTT 1 chr3R:30005489-30005609 ( 45) TTTTTTTT 1 chrX:11710480-11710600 ( 43) TTTTGTTT 1 chr3L:18790999-18791119 ( 113) TTTTGTTT 1 chr3L:13435319-13435439 ( 53) TTTTGTTT 1 chr2L:3159124-3159244 ( 4) TTTTGTTT 1 chrX:21045478-21045598 ( 74) TTTTGTTT 1 chr2R:17396014-17396134 ( 62) TTTTGTTT 1 chr3R:10189625-10189745 ( 55) TTTTGTTT 1 chr3R:22140183-22140303 ( 102) TTTTGTTT 1 chr3R:10093561-10093681 ( 38) TTTTGTTT 1 chrX:7194779-7194899 ( 45) TTTTGTTT 1 chr3L:2553239-2553359 ( 18) TTTTGTTT 1 chr2R:23432146-23432266 ( 67) TTTTGTTT 1 chrX:17726088-17726208 ( 39) TTTTGTTT 1 chr2R:18879207-18879327 ( 21) TTTTGTTT 1 chr3R:24614250-24614370 ( 66) TTTATTTT 1 chr3L:21025144-21025264 ( 43) TTTATTTT 1 chr3L:16190971-16191091 ( 113) TTTATTTT 1 chrX:13238633-13238753 ( 27) TTTATTTT 1 chr2L:5618098-5618218 ( 75) TTTATTTT 1 chr3L:2873233-2873353 ( 78) TTTATTTT 1 chr3R:21938525-21938645 ( 86) TTTATTTT 1 chr2R:22545260-22545380 ( 38) TTTATTTT 1 chr3L:2817992-2818112 ( 8) TTTATTTT 1 chr2R:22586977-22587097 ( 34) TTTATTTT 1 chr2R:13478521-13478641 ( 63) TTTATTTT 1 chrX:19485218-19485338 ( 32) TTTATTTT 1 chr3R:28831735-28831855 ( 23) TTTATTTT 1 chrX:6708209-6708329 ( 83) TTTCTTTT 1 chr3L:19234520-19234640 ( 98) TTTCTTTT 1 chr2L:121628-121748 ( 10) TTTCTTTT 1 chr3L:12515718-12515838 ( 51) TTTCTTTT 1 chr3L:9847101-9847221 ( 83) TTTCTTTT 1 chr3L:2835920-2836040 ( 104) TTTAGTTT 1 chr2L:9333453-9333573 ( 106) TTTAGTTT 1 chrX:1119359-1119479 ( 75) TTTTTCTT 1 chr2R:14081682-14081802 ( 11) TTTTTCTT 1 chr3L:3420426-3420546 ( 57) TTTCGTTT 1 chr2L:7879659-7879779 ( 53) TTTCGTTT 1 chr3L:21122795-21122915 ( 13) TCTTTTTT 1 chr2R:18566188-18566308 ( 87) TCTTTTTT 1 chrM:12849-12969 ( 93) TCTTTTTT 1 chr3R:21195710-21195830 ( 68) TTTTGCTT 1 chrX:13285273-13285393 ( 69) TTTTGCTT 1 chr2R:10572204-10572324 ( 1) TTTTGCTT 1 chr3R:9950012-9950132 ( 69) TCTTGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3123 E= 2.7e-036 -1295 -1295 -1295 179 -1295 -203 -1295 172 -1295 -1295 -1295 179 -63 -122 -1295 132 -1295 -1295 41 132 -1295 -171 -1295 170 -1295 -1295 -1295 179 -1295 -1295 -1295 179 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 2.7e-036 0.000000 0.000000 0.000000 1.000000 0.000000 0.050633 0.000000 0.949367 0.000000 0.000000 0.000000 1.000000 0.189873 0.088608 0.000000 0.721519 0.000000 0.000000 0.278481 0.721519 0.000000 0.063291 0.000000 0.936709 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 regular expression -------------------------------------------------------------------------------- TTTT[TG]TTT -------------------------------------------------------------------------------- Time 7.49 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAMAAA MEME-2 width = 8 sites = 90 llr = 698 E-value = 1.9e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAMAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 9aa95aaa pos.-specific C ::::3::: probability G 1::11::: matrix T ::::1::: bits 2.3 2.0 1.8 * ** 1.6 ** *** Relative 1.4 *** *** Entropy 1.1 **** *** (11.2 bits) 0.9 **** *** 0.7 **** *** 0.5 **** *** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAMAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24955794-24955914 24 5.58e-05 TAAAAAGTGA AAAAAAAA AACAGAAAAA chrX:17886900-17887020 31 5.58e-05 CGCAATGTAC AAAAAAAA AGCACACACC chr3L:7993719-7993839 23 5.58e-05 CATGCGCTTA AAAAAAAA GCAGCAACGC chr2L:7910127-7910247 27 5.58e-05 CAAAGGCAAA AAAAAAAA AACAGCGCTA chr2L:8009453-8009573 62 5.58e-05 aacaaaaaaa aaaaaaaa caaaatgaga chr3L:9848937-9849057 39 5.58e-05 atacgaatgg aaaaaaaa tataaagaag chrX:18544904-18545024 110 5.58e-05 aaaaaacaaa aaaaaaaa aat chrX:8592774-8592894 74 5.58e-05 GCGAAGCATA AAAAAAAA GTCGCCAGCA chr3R:17706520-17706640 10 5.58e-05 caaacaaac aaaaaaaa aaaGGAAGGG chr3L:18221435-18221555 43 5.58e-05 ACCTAAAGCG AAAAAAAA TAAATAAAAA chr2R:10558239-10558359 41 5.58e-05 TAATTGATTT AAAAAAAA GAAAAGCAAA chr2R:20996663-20996783 96 5.58e-05 GAAATAATAA AAAAAAAA CACGCACGCA chr3L:10365080-10365200 17 5.58e-05 aaaaaaatga aaaaaaaa atctgaaaaa chr2R:13957717-13957837 70 5.58e-05 AGTCATGCAA AAAAAAAA CATACAGGCT chrX:10932358-10932478 59 5.58e-05 ATGCTATAAA AAAAAAAA AATAAAAAAT chr3R:26535799-26535919 99 5.58e-05 AAAGAGACAC AAAAAAAA TGCAGTTTGT chr3R:11646994-11647114 72 5.58e-05 gaaacgaaag aaaaaaaa acacaaaatc chr2R:22545260-22545380 90 5.58e-05 AAACGGCAAA AAAAAAAA ATGCGCGTGT chr2R:19697466-19697586 61 5.58e-05 CCAAGATTGC AAAAAAAA AGAACCCAGC chr3L:21237145-21237265 34 5.58e-05 aaaataatac aaaaaaaa cgaaacaaaa chrX:19359270-19359390 63 5.58e-05 aaagaaaaat aaaaaaaa aaaaCTGAGG chrX:17732217-17732337 113 5.58e-05 GCAAAAACGA AAAAAAAA chr3L:5551130-5551250 100 5.58e-05 CACTCGACAC AAAAAAAA GACTAAAAAT chrX:3189913-3190033 2 5.58e-05 a aaaaaaaa aaacaaaaaa chr3R:21024283-21024403 54 5.58e-05 ataaaagaaa aaaaaaaa agaaaGCAGG chr2L:9231880-9232000 1 5.58e-05 . aaaaaaaa agaaaaaaag chr3L:9367581-9367701 89 5.58e-05 CAATGCAAAA AAAAAAAA GAGAAAAAAG chrX:11522092-11522212 63 5.58e-05 ACaaaaagaa aaaaaaaa gagaaaaaag chr2R:18879207-18879327 108 5.58e-05 AAAAACGCGC AAAAAAAA GTTAT chrX:9344245-9344365 90 5.58e-05 aagacaaaaa aaaaaaaa TATATATATT chr2R:15906092-15906212 99 5.58e-05 aaaagctgca aaaaaaaa TCTGCAAATA chr2L:8002339-8002459 59 5.58e-05 CCAAAGTGCG AAAAAAAA GAAAACGCTG chr2R:19157702-19157822 56 5.58e-05 agaaaaaaag aaaaaaaa aaagaaCGGA chr3R:13524765-13524885 96 5.58e-05 AAAAAAAAAC AAAAAAAA AGTGAAAGGA chr2R:19617273-19617393 44 9.51e-05 AAAGAAAAGC AAAACAAA AAGTTCACCA chrX:7540828-7540948 52 9.51e-05 aaaataaaga aaaacaaa ctaaaatttg chr3R:14020667-14020787 78 9.51e-05 ACCCGTTACA AAAACAAA ACATAAACAA chr3L:1810375-1810495 51 9.51e-05 CTGAAAATAG AAAACAAA GCGAAAAGCA chr2R:11205396-11205516 3 9.51e-05 GA AAAACAAA CTCTCTGAAC chr2L:16588911-16589031 8 9.51e-05 aaaaacc aaaacaaa acaaacaaca chr2R:17435700-17435820 19 9.51e-05 GACTCGTGCA AAAACAAA CACCTTGGGA chrX:21045478-21045598 113 9.51e-05 GCGTGCTTGT AAAACAAA chr2L:13545882-13546002 49 9.51e-05 aacagaggca aaaacaaa atacaaaCGG chr2L:7879659-7879779 93 9.51e-05 ATCGAAAAAT AAAACAAA ACCGGAAAAT chr3L:19234520-19234640 17 9.51e-05 AACACAACAG AAAACAAA AATAAAATGC chrX:21055214-21055334 54 9.51e-05 GAAGAAAAGG AAAACAAA AGCAACAAAC chr2L:16590487-16590607 35 9.51e-05 CAAAATAAAG AAAACAAA CAATGAAGGT chr3L:9357976-9358096 37 9.51e-05 ATTGTTGAGC AAAACAAA AATTAAATAA chr3L:5579927-5580047 2 9.51e-05 A AAAACAAA AACTGCAAAC chr3L:11634697-11634817 22 9.51e-05 GTCAGAAGAA AAAACAAA ATAAAAATAT chr2L:20673879-20673999 41 9.51e-05 GCGTACGAGC AAAACAAA TTGCAGTCGC chr3L:11368547-11368667 20 1.35e-04 acgaaccaaa aaaagaaa aaaaCGCCAG chr2R:14569630-14569750 80 1.35e-04 GGCAGATGGC AAAAGAAA GAAACTTTCT chr3L:11284343-11284463 108 1.35e-04 GTGCTATAAA AAAAGAAA AACAA chrX:2742208-2742328 102 1.35e-04 TAAGCCATAA AAAAGAAA AAAAGGGTTT chr2R:22586977-22587097 78 1.35e-04 AACAAAATAA AAAAGAAA TAAACAGCGA chr2R:15848601-15848721 54 1.35e-04 gcaaaagaaa aaaagaaa gaaaaagaag chr2R:18313165-18313285 54 1.35e-04 aaaccgaaac aaaagaaa aaaataaaaa chr3L:16886568-16886688 100 1.35e-04 TGAATTTCAA AAAAGAAA ATATTGTAAA chr3L:18783608-18783728 82 1.35e-04 caataacaga aaaagaaa CACACACAGC chr3L:2835920-2836040 13 1.90e-04 gcaaaaaggc aaaataaa atggcaagag chr3R:27194159-27194279 42 1.90e-04 AACCGCTTTC AAAATAAA CTGGCGACGA chrM:12170-12290 14 1.90e-04 TCCAATTAAA AAAATAAA AGATAATAAA chrX:13747759-13747879 2 1.90e-04 a aaaataaa tcaaaaataa chr2R:18314663-18314783 96 1.90e-04 CAAAAAGTAA AAAATAAA GAAGAGGAAG chr3R:9389098-9389218 101 1.90e-04 TCCAATGAAG AAAATAAA AACCAATGAC chrX:12672792-12672912 112 2.30e-04 TAGTCCAACC Gaaaaaaa t chr3L:12915620-12915740 35 2.30e-04 tataTAAAAT GAAAAAAA GTAGTAATAG chr3R:31768342-31768462 78 2.98e-04 AACTGATTTT AAAGAAAA AAAGGCCCAT chrX:12890471-12890591 94 2.98e-04 TTAAGTCAAG AAAGAAAA GCGGTACATT chr2R:22571971-22572091 99 2.98e-04 TAGCaaaaac gaaacaaa tgctagaaga chr2L:20674092-20674212 19 3.26e-04 ATAGGCAACA AAAGCAAA GCGCCAGCTA chrX:17488569-17488689 20 3.26e-04 gaggaaagca aaagcaaa agcaaatgcg chr3R:19074326-19074446 44 3.54e-04 TGTTTGCACT GAAAGAAA TGCACTTGGA chr3L:11557326-11557446 111 3.54e-04 CAAACGgaaa gaaagaaa ga chr3L:16002540-16002660 17 3.94e-04 CATCACTGTA AAAAACAA CACACACAAC chrX:1908956-1909076 2 4.22e-04 A AAAGGAAA TAGCTAAGTA chr2L:2888819-2888939 41 4.89e-04 GAAGAGAGCG CAAAAAAA GTGAAATGCG chr3L:8822076-8822196 63 4.89e-04 TCAGTCAATA CAAAAAAA CACAGAAGTA chr2L:18831340-18831460 91 4.89e-04 AAACATAAAC AAAACCAA GACAAAGAAT chr3R:20556858-20556978 85 4.89e-04 GAAAATAACA AAAACCAA ATGGGGCAAT chr3R:26464506-26464626 25 5.17e-04 TAAAGACAAA CAAACAAA TGGCGCTACG chrX:1612045-1612165 25 5.56e-04 AGAAGTATAT AACaaaaa agcgagcaaa chr3R:13647092-13647212 80 5.56e-04 ATCAGAAAGC AACAAAAA ATACACGTCA chr2R:14081682-14081802 101 5.95e-04 AATAATACTT GAAATAAA GAGACAAACT chr3R:21630541-21630661 33 5.95e-04 AGGGACAAGT GAAATAAA TACAAATAAA chrX:13644777-13644897 75 6.51e-04 ATAAAAGTAT AAAAGCAA CATTTTTACA chr3R:26496454-26496574 69 7.47e-04 GAACTTGTAT GAAGAAAA TGTGCATATT chr2R:7758962-7759082 41 7.86e-04 AGTGAAAATC AAACAAAA TGAAACTGCA chrX:2334705-2334825 102 8.06e-04 AAAGTCTCTG GAAGCAAA GTCCAGTGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAMAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24955794-24955914 5.6e-05 23_[+2]_89 chrX:17886900-17887020 5.6e-05 30_[+2]_82 chr3L:7993719-7993839 5.6e-05 22_[+2]_90 chr2L:7910127-7910247 5.6e-05 26_[+2]_86 chr2L:8009453-8009573 5.6e-05 61_[+2]_51 chr3L:9848937-9849057 5.6e-05 38_[+2]_74 chrX:18544904-18545024 5.6e-05 109_[+2]_3 chrX:8592774-8592894 5.6e-05 73_[+2]_39 chr3R:17706520-17706640 5.6e-05 9_[+2]_103 chr3L:18221435-18221555 5.6e-05 42_[+2]_70 chr2R:10558239-10558359 5.6e-05 40_[+2]_72 chr2R:20996663-20996783 5.6e-05 95_[+2]_17 chr3L:10365080-10365200 5.6e-05 16_[+2]_96 chr2R:13957717-13957837 5.6e-05 69_[+2]_43 chrX:10932358-10932478 5.6e-05 58_[+2]_54 chr3R:26535799-26535919 5.6e-05 98_[+2]_14 chr3R:11646994-11647114 5.6e-05 71_[+2]_41 chr2R:22545260-22545380 5.6e-05 89_[+2]_23 chr2R:19697466-19697586 5.6e-05 60_[+2]_52 chr3L:21237145-21237265 5.6e-05 33_[+2]_79 chrX:19359270-19359390 5.6e-05 62_[+2]_50 chrX:17732217-17732337 5.6e-05 112_[+2] chr3L:5551130-5551250 5.6e-05 99_[+2]_13 chrX:3189913-3190033 5.6e-05 1_[+2]_111 chr3R:21024283-21024403 5.6e-05 53_[+2]_59 chr2L:9231880-9232000 5.6e-05 [+2]_112 chr3L:9367581-9367701 5.6e-05 88_[+2]_24 chrX:11522092-11522212 5.6e-05 62_[+2]_50 chr2R:18879207-18879327 5.6e-05 107_[+2]_5 chrX:9344245-9344365 5.6e-05 89_[+2]_23 chr2R:15906092-15906212 5.6e-05 98_[+2]_14 chr2L:8002339-8002459 5.6e-05 58_[+2]_54 chr2R:19157702-19157822 5.6e-05 55_[+2]_57 chr3R:13524765-13524885 5.6e-05 95_[+2]_17 chr2R:19617273-19617393 9.5e-05 43_[+2]_69 chrX:7540828-7540948 9.5e-05 51_[+2]_61 chr3R:14020667-14020787 9.5e-05 77_[+2]_35 chr3L:1810375-1810495 9.5e-05 50_[+2]_62 chr2R:11205396-11205516 9.5e-05 2_[+2]_110 chr2L:16588911-16589031 9.5e-05 7_[+2]_105 chr2R:17435700-17435820 9.5e-05 18_[+2]_94 chrX:21045478-21045598 9.5e-05 112_[+2] chr2L:13545882-13546002 9.5e-05 48_[+2]_64 chr2L:7879659-7879779 9.5e-05 92_[+2]_20 chr3L:19234520-19234640 9.5e-05 16_[+2]_96 chrX:21055214-21055334 9.5e-05 53_[+2]_59 chr2L:16590487-16590607 9.5e-05 34_[+2]_78 chr3L:9357976-9358096 9.5e-05 36_[+2]_76 chr3L:5579927-5580047 9.5e-05 1_[+2]_111 chr3L:11634697-11634817 9.5e-05 21_[+2]_91 chr2L:20673879-20673999 9.5e-05 40_[+2]_72 chr3L:11368547-11368667 0.00013 19_[+2]_93 chr2R:14569630-14569750 0.00013 79_[+2]_33 chr3L:11284343-11284463 0.00013 107_[+2]_5 chrX:2742208-2742328 0.00013 101_[+2]_11 chr2R:22586977-22587097 0.00013 77_[+2]_35 chr2R:15848601-15848721 0.00013 53_[+2]_59 chr2R:18313165-18313285 0.00013 53_[+2]_59 chr3L:16886568-16886688 0.00013 99_[+2]_13 chr3L:18783608-18783728 0.00013 81_[+2]_31 chr3L:2835920-2836040 0.00019 12_[+2]_100 chr3R:27194159-27194279 0.00019 41_[+2]_71 chrM:12170-12290 0.00019 13_[+2]_99 chrX:13747759-13747879 0.00019 1_[+2]_111 chr2R:18314663-18314783 0.00019 95_[+2]_17 chr3R:9389098-9389218 0.00019 100_[+2]_12 chrX:12672792-12672912 0.00023 111_[+2]_1 chr3L:12915620-12915740 0.00023 34_[+2]_78 chr3R:31768342-31768462 0.0003 77_[+2]_35 chrX:12890471-12890591 0.0003 93_[+2]_19 chr2R:22571971-22572091 0.0003 98_[+2]_14 chr2L:20674092-20674212 0.00033 18_[+2]_94 chrX:17488569-17488689 0.00033 19_[+2]_93 chr3R:19074326-19074446 0.00035 43_[+2]_69 chr3L:11557326-11557446 0.00035 110_[+2]_2 chr3L:16002540-16002660 0.00039 16_[+2]_96 chrX:1908956-1909076 0.00042 1_[+2]_111 chr2L:2888819-2888939 0.00049 40_[+2]_72 chr3L:8822076-8822196 0.00049 62_[+2]_50 chr2L:18831340-18831460 0.00049 90_[+2]_22 chr3R:20556858-20556978 0.00049 84_[+2]_28 chr3R:26464506-26464626 0.00052 24_[+2]_88 chrX:1612045-1612165 0.00056 24_[+2]_88 chr3R:13647092-13647212 0.00056 79_[+2]_33 chr2R:14081682-14081802 0.0006 100_[+2]_12 chr3R:21630541-21630661 0.0006 32_[+2]_80 chrX:13644777-13644897 0.00065 74_[+2]_38 chr3R:26496454-26496574 0.00075 68_[+2]_44 chr2R:7758962-7759082 0.00079 40_[+2]_72 chrX:2334705-2334825 0.00081 101_[+2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAMAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAMAAA width=8 seqs=90 chr2R:24955794-24955914 ( 24) AAAAAAAA 1 chrX:17886900-17887020 ( 31) AAAAAAAA 1 chr3L:7993719-7993839 ( 23) AAAAAAAA 1 chr2L:7910127-7910247 ( 27) AAAAAAAA 1 chr2L:8009453-8009573 ( 62) AAAAAAAA 1 chr3L:9848937-9849057 ( 39) AAAAAAAA 1 chrX:18544904-18545024 ( 110) AAAAAAAA 1 chrX:8592774-8592894 ( 74) AAAAAAAA 1 chr3R:17706520-17706640 ( 10) AAAAAAAA 1 chr3L:18221435-18221555 ( 43) AAAAAAAA 1 chr2R:10558239-10558359 ( 41) AAAAAAAA 1 chr2R:20996663-20996783 ( 96) AAAAAAAA 1 chr3L:10365080-10365200 ( 17) AAAAAAAA 1 chr2R:13957717-13957837 ( 70) AAAAAAAA 1 chrX:10932358-10932478 ( 59) AAAAAAAA 1 chr3R:26535799-26535919 ( 99) AAAAAAAA 1 chr3R:11646994-11647114 ( 72) AAAAAAAA 1 chr2R:22545260-22545380 ( 90) AAAAAAAA 1 chr2R:19697466-19697586 ( 61) AAAAAAAA 1 chr3L:21237145-21237265 ( 34) AAAAAAAA 1 chrX:19359270-19359390 ( 63) AAAAAAAA 1 chrX:17732217-17732337 ( 113) AAAAAAAA 1 chr3L:5551130-5551250 ( 100) AAAAAAAA 1 chrX:3189913-3190033 ( 2) AAAAAAAA 1 chr3R:21024283-21024403 ( 54) AAAAAAAA 1 chr2L:9231880-9232000 ( 1) AAAAAAAA 1 chr3L:9367581-9367701 ( 89) AAAAAAAA 1 chrX:11522092-11522212 ( 63) AAAAAAAA 1 chr2R:18879207-18879327 ( 108) AAAAAAAA 1 chrX:9344245-9344365 ( 90) AAAAAAAA 1 chr2R:15906092-15906212 ( 99) AAAAAAAA 1 chr2L:8002339-8002459 ( 59) AAAAAAAA 1 chr2R:19157702-19157822 ( 56) AAAAAAAA 1 chr3R:13524765-13524885 ( 96) AAAAAAAA 1 chr2R:19617273-19617393 ( 44) AAAACAAA 1 chrX:7540828-7540948 ( 52) AAAACAAA 1 chr3R:14020667-14020787 ( 78) AAAACAAA 1 chr3L:1810375-1810495 ( 51) AAAACAAA 1 chr2R:11205396-11205516 ( 3) AAAACAAA 1 chr2L:16588911-16589031 ( 8) AAAACAAA 1 chr2R:17435700-17435820 ( 19) AAAACAAA 1 chrX:21045478-21045598 ( 113) AAAACAAA 1 chr2L:13545882-13546002 ( 49) AAAACAAA 1 chr2L:7879659-7879779 ( 93) AAAACAAA 1 chr3L:19234520-19234640 ( 17) AAAACAAA 1 chrX:21055214-21055334 ( 54) AAAACAAA 1 chr2L:16590487-16590607 ( 35) AAAACAAA 1 chr3L:9357976-9358096 ( 37) AAAACAAA 1 chr3L:5579927-5580047 ( 2) AAAACAAA 1 chr3L:11634697-11634817 ( 22) AAAACAAA 1 chr2L:20673879-20673999 ( 41) AAAACAAA 1 chr3L:11368547-11368667 ( 20) AAAAGAAA 1 chr2R:14569630-14569750 ( 80) AAAAGAAA 1 chr3L:11284343-11284463 ( 108) AAAAGAAA 1 chrX:2742208-2742328 ( 102) AAAAGAAA 1 chr2R:22586977-22587097 ( 78) AAAAGAAA 1 chr2R:15848601-15848721 ( 54) AAAAGAAA 1 chr2R:18313165-18313285 ( 54) AAAAGAAA 1 chr3L:16886568-16886688 ( 100) AAAAGAAA 1 chr3L:18783608-18783728 ( 82) AAAAGAAA 1 chr3L:2835920-2836040 ( 13) AAAATAAA 1 chr3R:27194159-27194279 ( 42) AAAATAAA 1 chrM:12170-12290 ( 14) AAAATAAA 1 chrX:13747759-13747879 ( 2) AAAATAAA 1 chr2R:18314663-18314783 ( 96) AAAATAAA 1 chr3R:9389098-9389218 ( 101) AAAATAAA 1 chrX:12672792-12672912 ( 112) GAAAAAAA 1 chr3L:12915620-12915740 ( 35) GAAAAAAA 1 chr3R:31768342-31768462 ( 78) AAAGAAAA 1 chrX:12890471-12890591 ( 94) AAAGAAAA 1 chr2R:22571971-22572091 ( 99) GAAACAAA 1 chr2L:20674092-20674212 ( 19) AAAGCAAA 1 chrX:17488569-17488689 ( 20) AAAGCAAA 1 chr3R:19074326-19074446 ( 44) GAAAGAAA 1 chr3L:11557326-11557446 ( 111) GAAAGAAA 1 chr3L:16002540-16002660 ( 17) AAAAACAA 1 chrX:1908956-1909076 ( 2) AAAGGAAA 1 chr2L:2888819-2888939 ( 41) CAAAAAAA 1 chr3L:8822076-8822196 ( 63) CAAAAAAA 1 chr2L:18831340-18831460 ( 91) AAAACCAA 1 chr3R:20556858-20556978 ( 85) AAAACCAA 1 chr3R:26464506-26464626 ( 25) CAAACAAA 1 chrX:1612045-1612165 ( 25) AACAAAAA 1 chr3R:13647092-13647212 ( 80) AACAAAAA 1 chr2R:14081682-14081802 ( 101) GAAATAAA 1 chr3R:21630541-21630661 ( 33) GAAATAAA 1 chrX:13644777-13644897 ( 75) AAAAGCAA 1 chr3R:26496454-26496574 ( 69) GAAGAAAA 1 chr2R:7758962-7759082 ( 41) AAACAAAA 1 chrX:2334705-2334825 ( 102) GAAGCAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAMAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.33748 E= 1.9e-028 156 -263 -107 -1314 177 -1314 -1314 -1314 173 -322 -1314 -1314 163 -422 -143 -1314 77 37 -54 -170 170 -222 -1314 -1314 177 -1314 -1314 -1314 177 -1314 -1314 -1314 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAMAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 90 E= 1.9e-028 0.866667 0.033333 0.100000 0.000000 1.000000 0.000000 0.000000 0.000000 0.977778 0.022222 0.000000 0.000000 0.911111 0.011111 0.077778 0.000000 0.500000 0.266667 0.144444 0.088889 0.955556 0.044444 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAMAAA MEME-2 regular expression -------------------------------------------------------------------------------- AAAA[AC]AAA -------------------------------------------------------------------------------- Time 13.71 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTTTTTK MEME-3 width = 8 sites = 59 llr = 476 E-value = 9.1e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTTTTTK MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :3:::::1 probability G 17::3::5 matrix T 9:aa7aa4 bits 2.3 2.0 1.8 ** ** 1.6 * ** ** Relative 1.4 * ** ** Entropy 1.1 ******* (11.6 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTTTTTG consensus C G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTTTK MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:9237413-9237533 33 2.57e-05 GTGTTTGTTT TGTTTTTG TTTGCGGCTT chr3L:10352240-10352360 87 2.57e-05 tttttttttt tgtttttg cttctgcttC chr2L:3159124-3159244 19 2.57e-05 tttttcttct tgtttttG GTTGAATTAA chr2R:21543354-21543474 70 2.57e-05 TTACTCCGCt tgtttttg tgtttttttt chr2R:10572204-10572324 36 2.57e-05 CTCTGGTTGT TGTTTTTG TATTTGGTGC chr2R:11651128-11651248 6 2.57e-05 cttgt tgtttTTG CTGCTGCTGG chrX:17726088-17726208 66 2.57e-05 tattttgttt tgtttttg cttgcccttc chr3L:16190971-16191091 43 4.44e-05 CCGACACAGT TGTTGTTG GCGCTGCGCT chr3R:15091793-15091913 92 4.44e-05 GGGAGTTGAG TGTTGTTG GGGCGGCGAG chr3L:1861462-1861582 2 4.44e-05 t tgttgttg cttttGCTGT chr3L:2805666-2805786 42 4.44e-05 TCgttgttct tgttgttg ctgctgttgt chrX:8592774-8592894 31 4.44e-05 ttgctgtcgc tgttgttg ctgttgcttt chr2L:5618098-5618218 56 4.44e-05 CTGTGATTTT TGTTGTTG CTGGGCCACA chrX:12672792-12672912 65 4.44e-05 ATCGCGACGT TGTTGTTG CTTTTATTGG chr3R:21938525-21938645 55 4.44e-05 ctgtcggtgt tgttgttg tcgttgccgt chr2R:17396014-17396134 105 4.44e-05 AGTCGCTGGT TGTTGTTG CACTAATT chr3L:17238298-17238418 16 4.44e-05 ttgctgctgt tgttgttg ccgctggtgc chr3L:12915620-12915740 98 4.44e-05 AAGCGATGGG TGTTGTTG GCTGAAGTTA chr3L:21237145-21237265 111 4.44e-05 GCGCACTTTG TGTTGTTG TC chrX:6632037-6632157 24 4.44e-05 TTGGCCGCtt tgttgttg ttttggtttt chr3L:18621726-18621846 3 4.44e-05 TT TGTTGTTG TCgctgctgc chr3R:20286216-20286336 109 7.97e-05 AACATTTCGC TGTTTTTT CGCA chr2L:19156105-19156225 11 7.97e-05 TTGGCGTAAT TGTTTTTT CTTTGCCATT chr3R:16253122-16253242 77 7.97e-05 CTCTTGACGT TGTTTTTT ATGTGCGGCT chrX:21045478-21045598 43 7.97e-05 TTTTGTATGT TGTTTTTT CTTCTCACAT chr3L:6155263-6155383 46 7.97e-05 tttttttaat tgtttttt tttctttgtt chr3R:22140183-22140303 93 7.97e-05 ttttggttct tgtttttt gttttgtttt chr2R:18355960-18356080 77 7.97e-05 GGTTAGTTGT TGTTTTTT TCTTTATTTC chr3L:2817992-2818112 46 7.97e-05 TCTTTTTTAC TGTTTTTT ATGTCGTGCC chr3R:14557580-14557700 60 7.97e-05 cgtttttctg tgtttttt GTCGCGCTTC chrX:19485218-19485338 42 7.97e-05 tttattttcc tgtttttt tgcttgtttt chr2R:13023076-13023196 65 7.97e-05 TCtttttttt tgtttttt tttgccaatt chr3R:24614250-24614370 8 1.05e-04 GCTTTTT TCTTTTTG CCCAGATAGC chrX:6708209-6708329 57 1.05e-04 ACAGACTGCG TCTTTTTG CTATTTTTTT chr3R:10189625-10189745 107 1.05e-04 tTTGTGCTGC TCTTTTTG GACACA chr3R:10588814-10588934 113 1.05e-04 TCTCTTATTT TCTTTTTG chr3R:8971962-8972082 68 1.05e-04 ctttcttttt tctttTTG ATACCTCTTT chr3R:30014038-30014158 42 1.05e-04 ACCTTTCTCT TCTTTTTG CCCGGGGTAC chr3L:18783608-18783728 46 1.05e-04 gtcgtcgtcg tcTTTTTG CGCaaaaaga chr2R:11690675-11690795 90 1.31e-04 GAGGGAAAAT TGTTGTTT GATTAATTTA chrX:7290967-7291087 59 1.74e-04 cctttgtgtt tgtttttc ccttttcGGT chr2R:14569630-14569750 34 1.74e-04 tttgtggctt tgtttttC ATGCAACATA chr2L:121628-121748 94 1.74e-04 AGAAGCGTCG TCTTGTTG CACCGACGAC chr2R:17682205-17682325 101 1.74e-04 TGCTCTGTTC TGTTTTTC TTATTTTCCA chr3L:5943654-5943774 55 1.74e-04 CCGCTCTACG TGtttttc ttgttttctt chr2R:11178243-11178363 61 2.09e-04 CACATTGGAT TCTTTTTT TTTTCAGCCA chr3L:2873233-2873353 111 2.09e-04 ACTTTTGGTT TCTTTTTT TG chr3L:3420426-3420546 72 2.09e-04 tttcgcttcg tCTTTTTT ATGAATGAAA chrX:7194779-7194899 61 2.09e-04 TTTCTTTGAT TCTTTTTT GCGCATATGG chr3L:18080152-18080272 34 2.09e-04 GAGTCTTGCC TCTTTTTT TCTGCAGTTT chr3R:30005489-30005609 28 2.09e-04 GGTGTCCTCt tctttttt tctttttcat chr3L:10365080-10365200 69 2.28e-04 GTATGTGAGC TGTTGTTC GCCTCTTTTA chr3L:13435319-13435439 25 2.78e-04 ATGGTTTTCC TCTTTTTC CTTTTTGCCA chr3L:9847101-9847221 52 2.78e-04 ACATACGTTT TCTTTTTC CTACATACGC chr2L:7790673-7790793 3 3.54e-04 GC GGTTTTTT GGAATTGATC chr2R:12279474-12279594 37 3.54e-04 GTGGCGTATG GGTTTTTT GTTTTTTTTG chr3L:2553239-2553359 37 3.54e-04 gttatgttat ggtttttt ATCACCCAGT chrX:13285273-13285393 33 3.89e-04 CTGCCTCTGC TTTTTTTG CCTCTTCTCC chr3R:31768342-31768462 4 4.52e-04 GAT TTTTGTTG TTAACTCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTTTK MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:9237413-9237533 2.6e-05 32_[+3]_80 chr3L:10352240-10352360 2.6e-05 86_[+3]_26 chr2L:3159124-3159244 2.6e-05 18_[+3]_94 chr2R:21543354-21543474 2.6e-05 69_[+3]_43 chr2R:10572204-10572324 2.6e-05 35_[+3]_77 chr2R:11651128-11651248 2.6e-05 5_[+3]_107 chrX:17726088-17726208 2.6e-05 65_[+3]_47 chr3L:16190971-16191091 4.4e-05 42_[+3]_70 chr3R:15091793-15091913 4.4e-05 91_[+3]_21 chr3L:1861462-1861582 4.4e-05 1_[+3]_111 chr3L:2805666-2805786 4.4e-05 41_[+3]_71 chrX:8592774-8592894 4.4e-05 30_[+3]_82 chr2L:5618098-5618218 4.4e-05 55_[+3]_57 chrX:12672792-12672912 4.4e-05 64_[+3]_48 chr3R:21938525-21938645 4.4e-05 54_[+3]_58 chr2R:17396014-17396134 4.4e-05 104_[+3]_8 chr3L:17238298-17238418 4.4e-05 15_[+3]_97 chr3L:12915620-12915740 4.4e-05 97_[+3]_15 chr3L:21237145-21237265 4.4e-05 110_[+3]_2 chrX:6632037-6632157 4.4e-05 23_[+3]_89 chr3L:18621726-18621846 4.4e-05 2_[+3]_110 chr3R:20286216-20286336 8e-05 108_[+3]_4 chr2L:19156105-19156225 8e-05 10_[+3]_102 chr3R:16253122-16253242 8e-05 76_[+3]_36 chrX:21045478-21045598 8e-05 42_[+3]_70 chr3L:6155263-6155383 8e-05 45_[+3]_67 chr3R:22140183-22140303 8e-05 92_[+3]_20 chr2R:18355960-18356080 8e-05 76_[+3]_36 chr3L:2817992-2818112 8e-05 45_[+3]_67 chr3R:14557580-14557700 8e-05 59_[+3]_53 chrX:19485218-19485338 8e-05 41_[+3]_71 chr2R:13023076-13023196 8e-05 64_[+3]_48 chr3R:24614250-24614370 0.00011 7_[+3]_105 chrX:6708209-6708329 0.00011 56_[+3]_56 chr3R:10189625-10189745 0.00011 106_[+3]_6 chr3R:10588814-10588934 0.00011 112_[+3] chr3R:8971962-8972082 0.00011 67_[+3]_45 chr3R:30014038-30014158 0.00011 41_[+3]_71 chr3L:18783608-18783728 0.00011 45_[+3]_67 chr2R:11690675-11690795 0.00013 89_[+3]_23 chrX:7290967-7291087 0.00017 58_[+3]_54 chr2R:14569630-14569750 0.00017 33_[+3]_79 chr2L:121628-121748 0.00017 93_[+3]_19 chr2R:17682205-17682325 0.00017 100_[+3]_12 chr3L:5943654-5943774 0.00017 54_[+3]_58 chr2R:11178243-11178363 0.00021 60_[+3]_52 chr3L:2873233-2873353 0.00021 110_[+3]_2 chr3L:3420426-3420546 0.00021 71_[+3]_41 chrX:7194779-7194899 0.00021 60_[+3]_52 chr3L:18080152-18080272 0.00021 33_[+3]_79 chr3R:30005489-30005609 0.00021 27_[+3]_85 chr3L:10365080-10365200 0.00023 68_[+3]_44 chr3L:13435319-13435439 0.00028 24_[+3]_88 chr3L:9847101-9847221 0.00028 51_[+3]_61 chr2L:7790673-7790793 0.00035 2_[+3]_110 chr2R:12279474-12279594 0.00035 36_[+3]_76 chr3L:2553239-2553359 0.00035 36_[+3]_76 chrX:13285273-13285393 0.00039 32_[+3]_80 chr3R:31768342-31768462 0.00045 3_[+3]_109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTTTK MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTTTTTK width=8 seqs=59 chr3R:9237413-9237533 ( 33) TGTTTTTG 1 chr3L:10352240-10352360 ( 87) TGTTTTTG 1 chr2L:3159124-3159244 ( 19) TGTTTTTG 1 chr2R:21543354-21543474 ( 70) TGTTTTTG 1 chr2R:10572204-10572324 ( 36) TGTTTTTG 1 chr2R:11651128-11651248 ( 6) TGTTTTTG 1 chrX:17726088-17726208 ( 66) TGTTTTTG 1 chr3L:16190971-16191091 ( 43) TGTTGTTG 1 chr3R:15091793-15091913 ( 92) TGTTGTTG 1 chr3L:1861462-1861582 ( 2) TGTTGTTG 1 chr3L:2805666-2805786 ( 42) TGTTGTTG 1 chrX:8592774-8592894 ( 31) TGTTGTTG 1 chr2L:5618098-5618218 ( 56) TGTTGTTG 1 chrX:12672792-12672912 ( 65) TGTTGTTG 1 chr3R:21938525-21938645 ( 55) TGTTGTTG 1 chr2R:17396014-17396134 ( 105) TGTTGTTG 1 chr3L:17238298-17238418 ( 16) TGTTGTTG 1 chr3L:12915620-12915740 ( 98) TGTTGTTG 1 chr3L:21237145-21237265 ( 111) TGTTGTTG 1 chrX:6632037-6632157 ( 24) TGTTGTTG 1 chr3L:18621726-18621846 ( 3) TGTTGTTG 1 chr3R:20286216-20286336 ( 109) TGTTTTTT 1 chr2L:19156105-19156225 ( 11) TGTTTTTT 1 chr3R:16253122-16253242 ( 77) TGTTTTTT 1 chrX:21045478-21045598 ( 43) TGTTTTTT 1 chr3L:6155263-6155383 ( 46) TGTTTTTT 1 chr3R:22140183-22140303 ( 93) TGTTTTTT 1 chr2R:18355960-18356080 ( 77) TGTTTTTT 1 chr3L:2817992-2818112 ( 46) TGTTTTTT 1 chr3R:14557580-14557700 ( 60) TGTTTTTT 1 chrX:19485218-19485338 ( 42) TGTTTTTT 1 chr2R:13023076-13023196 ( 65) TGTTTTTT 1 chr3R:24614250-24614370 ( 8) TCTTTTTG 1 chrX:6708209-6708329 ( 57) TCTTTTTG 1 chr3R:10189625-10189745 ( 107) TCTTTTTG 1 chr3R:10588814-10588934 ( 113) TCTTTTTG 1 chr3R:8971962-8972082 ( 68) TCTTTTTG 1 chr3R:30014038-30014158 ( 42) TCTTTTTG 1 chr3L:18783608-18783728 ( 46) TCTTTTTG 1 chr2R:11690675-11690795 ( 90) TGTTGTTT 1 chrX:7290967-7291087 ( 59) TGTTTTTC 1 chr2R:14569630-14569750 ( 34) TGTTTTTC 1 chr2L:121628-121748 ( 94) TCTTGTTG 1 chr2R:17682205-17682325 ( 101) TGTTTTTC 1 chr3L:5943654-5943774 ( 55) TGTTTTTC 1 chr2R:11178243-11178363 ( 61) TCTTTTTT 1 chr3L:2873233-2873353 ( 111) TCTTTTTT 1 chr3L:3420426-3420546 ( 72) TCTTTTTT 1 chrX:7194779-7194899 ( 61) TCTTTTTT 1 chr3L:18080152-18080272 ( 34) TCTTTTTT 1 chr3R:30005489-30005609 ( 28) TCTTTTTT 1 chr3L:10365080-10365200 ( 69) TGTTGTTC 1 chr3L:13435319-13435439 ( 25) TCTTTTTC 1 chr3L:9847101-9847221 ( 52) TCTTTTTC 1 chr2L:7790673-7790793 ( 3) GGTTTTTT 1 chr2R:12279474-12279594 ( 37) GGTTTTTT 1 chr3L:2553239-2553359 ( 37) GGTTTTTT 1 chrX:13285273-13285393 ( 33) TTTTTTTG 1 chr3R:31768342-31768462 ( 4) TTTTGTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTTTK MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1641 E= 9.1e-009 -1253 -1253 -205 171 -1253 39 173 -309 -1253 -1253 -1253 179 -1253 -1253 -1253 179 -1253 -1253 54 126 -1253 -1253 -1253 179 -1253 -1253 -1253 179 -1253 -80 132 30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTTTK MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 9.1e-009 0.000000 0.000000 0.050847 0.949153 0.000000 0.271186 0.694915 0.033898 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.305085 0.694915 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.118644 0.525424 0.355932 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTTTK MEME-3 regular expression -------------------------------------------------------------------------------- T[GC]TT[TG]TT[GT] -------------------------------------------------------------------------------- Time 19.75 secs. ******************************************************************************** ******************************************************************************** MOTIF CAAAGTCC MEME-4 width = 8 sites = 17 llr = 176 E-value = 4.2e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :99a:::: pos.-specific C a1::::99 probability G ::1:a:11 matrix T :::::a:: bits 2.3 * * 2.0 * * ** 1.8 * ***** 1.6 * ***** Relative 1.4 ******** Entropy 1.1 ******** (14.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAAAGTCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3817086-3817206 39 1.37e-05 GGCCAGAGGG CAAAGTCC ACGTTCATCT chr2L:2802705-2802825 106 1.37e-05 TCGAGTGCTC CAAAGTCC AAGTTGT chrX:8592774-8592894 94 1.37e-05 CGCCAGCATA CAAAGTCC AATCAGAATA chr2R:10474722-10474842 62 1.37e-05 CACGAGGGGC CAAAGTCC ACGAGATATT chr3L:21122795-21122915 68 1.37e-05 AAGATCTGTT CAAAGTCC AAAGCGCCTT chr2L:7207812-7207932 38 1.37e-05 TGGCACTGAC CAAAGTCC AGCACCTTAA chr3R:27706164-27706284 13 1.37e-05 TCAAGCTGGA CAAAGTCC GGATTGGGGA chr3R:26464506-26464626 83 1.37e-05 ACCGGCTGGC CAAAGTCC ACGCGGCGAA chrX:20166803-20166923 78 1.37e-05 GGGTTCGGTT CAAAGTCC GAACACCGGT chr3R:9389098-9389218 86 1.37e-05 ATTACAAAGT CAAAGTCC AATGAAGAAA chrX:9139277-9139397 40 1.37e-05 CCGATAAATC CAAAGTCC GGCAGCAGCT chr3R:12406793-12406913 88 1.37e-05 GAGATGGGTG CAAAGTCC AAGACAGACC chr2L:8002339-8002459 81 1.37e-05 ACGCTGGGTG CAAAGTCC ACTATGCGGA chr2L:18122303-18122423 56 2.33e-05 CAGAACTTTA CCAAGTCC TTTATGGATA chr3R:13524765-13524885 29 3.31e-05 AAACCAATTC CAGAGTCC GGCAAACAAC chr2L:18457121-18457241 25 6.08e-05 CCAACAACAA CAAAGtgc aaattgcact chr2R:12946367-12946487 52 6.08e-05 CGAGCGGCAA CAAAGTCG ATCGTATAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3817086-3817206 1.4e-05 38_[+4]_74 chr2L:2802705-2802825 1.4e-05 105_[+4]_7 chrX:8592774-8592894 1.4e-05 93_[+4]_19 chr2R:10474722-10474842 1.4e-05 61_[+4]_51 chr3L:21122795-21122915 1.4e-05 67_[+4]_45 chr2L:7207812-7207932 1.4e-05 37_[+4]_75 chr3R:27706164-27706284 1.4e-05 12_[+4]_100 chr3R:26464506-26464626 1.4e-05 82_[+4]_30 chrX:20166803-20166923 1.4e-05 77_[+4]_35 chr3R:9389098-9389218 1.4e-05 85_[+4]_27 chrX:9139277-9139397 1.4e-05 39_[+4]_73 chr3R:12406793-12406913 1.4e-05 87_[+4]_25 chr2L:8002339-8002459 1.4e-05 80_[+4]_32 chr2L:18122303-18122423 2.3e-05 55_[+4]_57 chr3R:13524765-13524885 3.3e-05 28_[+4]_84 chr2L:18457121-18457241 6.1e-05 24_[+4]_88 chr2R:12946367-12946487 6.1e-05 51_[+4]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAAAGTCC width=8 seqs=17 chr3L:3817086-3817206 ( 39) CAAAGTCC 1 chr2L:2802705-2802825 ( 106) CAAAGTCC 1 chrX:8592774-8592894 ( 94) CAAAGTCC 1 chr2R:10474722-10474842 ( 62) CAAAGTCC 1 chr3L:21122795-21122915 ( 68) CAAAGTCC 1 chr2L:7207812-7207932 ( 38) CAAAGTCC 1 chr3R:27706164-27706284 ( 13) CAAAGTCC 1 chr3R:26464506-26464626 ( 83) CAAAGTCC 1 chrX:20166803-20166923 ( 78) CAAAGTCC 1 chr3R:9389098-9389218 ( 86) CAAAGTCC 1 chrX:9139277-9139397 ( 40) CAAAGTCC 1 chr3R:12406793-12406913 ( 88) CAAAGTCC 1 chr2L:8002339-8002459 ( 81) CAAAGTCC 1 chr2L:18122303-18122423 ( 56) CCAAGTCC 1 chr3R:13524765-13524885 ( 29) CAGAGTCC 1 chr2L:18457121-18457241 ( 25) CAAAGTGC 1 chr2R:12946367-12946487 ( 52) CAAAGTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7672 E= 4.2e-003 -1073 227 -1073 -1073 168 -181 -1073 -1073 168 -1073 -183 -1073 177 -1073 -1073 -1073 -1073 -1073 225 -1073 -1073 -1073 -1073 179 -1073 219 -183 -1073 -1073 219 -183 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 4.2e-003 0.000000 1.000000 0.000000 0.000000 0.941176 0.058824 0.000000 0.000000 0.941176 0.000000 0.058824 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.941176 0.058824 0.000000 0.000000 0.941176 0.058824 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAAAGTCC MEME-4 regular expression -------------------------------------------------------------------------------- CAAAGTCC -------------------------------------------------------------------------------- Time 25.65 secs. ******************************************************************************** ******************************************************************************** MOTIF GCACACAC MEME-5 width = 8 sites = 28 llr = 256 E-value = 4.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACACAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 3:a:7:8: pos.-specific C :a:a3a:7 probability G 7::::::: matrix T ::::::23 bits 2.3 * * * 2.0 * * * 1.8 *** * 1.6 *** * Relative 1.4 *** * * Entropy 1.1 ******** (13.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCACACAC consensus A C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACACAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17886900-17887020 40 9.80e-06 CAAAAAAAAA GCACACAC CAAATGAGGA chr2L:18457121-18457241 86 9.80e-06 ggcaaccgca gcacacac aGATACTCCA chr3R:14020667-14020787 9 9.80e-06 AAGAGCTT GCACACAC TTCCTCATAG chr2R:17439612-17439732 3 9.80e-06 TT Gcacacac acacacacac chr2L:3159124-3159244 78 9.80e-06 GCACACATCT GCACACAC ATATTGCAGC chr3L:2428816-2428936 38 9.80e-06 AAAACGCAGC GCACACAC ACAGGCAGCC chr2L:9333453-9333573 14 9.80e-06 GGCAGCAGCA GCACACAC ACCCGCAACT chr3R:5231745-5231865 49 9.80e-06 acacactttc gcacacac gcacacGGGC chr3L:4068533-4068653 104 1.67e-05 GGAACCACAA GCACCCAC CCACTCCAA chr3R:21587606-21587726 89 1.67e-05 GCCAAGTGCC GCACCCAC CCCTCACCAC chr3L:18621726-18621846 70 1.67e-05 GCCCGCTTCT GCACCCAC CGCCCACCGT chrX:20159073-20159193 9 3.04e-05 CCACACTC ACACACAC AGGAGCACAC chr3L:21025144-21025264 107 3.04e-05 actctctcac acacacac acaacg chr2R:13957717-13957837 98 3.04e-05 GCCACTAGAC ACACACAC CTTCTCACGT chr3L:5579927-5580047 37 3.04e-05 ACAAAAATAA ACACACAC ATAAAAAACA chr3R:20007844-20007964 8 4.41e-05 ATGCTGT GCACACAT GGCCGTTTAA chrX:2742208-2742328 77 4.41e-05 ATTCATAAGT GCACACAT GTGTGGGTAA chr2L:20673879-20673999 81 5.37e-05 TAACGACGTG GCACACTC GCGTGCAAGT chr3L:11789137-11789257 48 6.34e-05 TAATATAAAC ACACCCAC AAAAGCACTA chr2L:7189787-7189907 9 6.34e-05 GTCCACAG ACACCCAC TCGACTTGGT chr3R:14007668-14007788 31 7.30e-05 TAAATCATAT GCACCCAT TTTCGTTTGA chr3R:27929340-27929460 30 7.30e-05 CGCTTATCAA GCACCCAT CCTCCAATAA chr3R:21948828-21948948 53 7.30e-05 ATGAATGAAG GCACCCAT ACAGTTGCAC chrX:15079368-15079488 36 9.89e-05 ACATGTATGT ACACACAT GTGAAAGGCG chr3L:5551130-5551250 87 1.12e-04 AGGCGAAAAA ACACACTC GACACAAAAA chrM:4702-4822 40 1.12e-04 ATTAATGTCT ACACACTC AAATCACCCT chr2L:2888819-2888939 86 1.26e-04 TTTTCAAACG GCACACTT GGACCTGGAC chr2R:22596900-22597020 6 1.26e-04 CGGTG GCACACTT CAGTCACATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACACAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17886900-17887020 9.8e-06 39_[+5]_73 chr2L:18457121-18457241 9.8e-06 85_[+5]_27 chr3R:14020667-14020787 9.8e-06 8_[+5]_104 chr2R:17439612-17439732 9.8e-06 2_[+5]_110 chr2L:3159124-3159244 9.8e-06 77_[+5]_35 chr3L:2428816-2428936 9.8e-06 37_[+5]_75 chr2L:9333453-9333573 9.8e-06 13_[+5]_99 chr3R:5231745-5231865 9.8e-06 48_[+5]_64 chr3L:4068533-4068653 1.7e-05 103_[+5]_9 chr3R:21587606-21587726 1.7e-05 88_[+5]_24 chr3L:18621726-18621846 1.7e-05 69_[+5]_43 chrX:20159073-20159193 3e-05 8_[+5]_104 chr3L:21025144-21025264 3e-05 106_[+5]_6 chr2R:13957717-13957837 3e-05 97_[+5]_15 chr3L:5579927-5580047 3e-05 36_[+5]_76 chr3R:20007844-20007964 4.4e-05 7_[+5]_105 chrX:2742208-2742328 4.4e-05 76_[+5]_36 chr2L:20673879-20673999 5.4e-05 80_[+5]_32 chr3L:11789137-11789257 6.3e-05 47_[+5]_65 chr2L:7189787-7189907 6.3e-05 8_[+5]_104 chr3R:14007668-14007788 7.3e-05 30_[+5]_82 chr3R:27929340-27929460 7.3e-05 29_[+5]_83 chr3R:21948828-21948948 7.3e-05 52_[+5]_60 chrX:15079368-15079488 9.9e-05 35_[+5]_77 chr3L:5551130-5551250 0.00011 86_[+5]_26 chrM:4702-4822 0.00011 39_[+5]_73 chr2L:2888819-2888939 0.00013 85_[+5]_27 chr2R:22596900-22597020 0.00013 5_[+5]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACACAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACACAC width=8 seqs=28 chrX:17886900-17887020 ( 40) GCACACAC 1 chr2L:18457121-18457241 ( 86) GCACACAC 1 chr3R:14020667-14020787 ( 9) GCACACAC 1 chr2R:17439612-17439732 ( 3) GCACACAC 1 chr2L:3159124-3159244 ( 78) GCACACAC 1 chr3L:2428816-2428936 ( 38) GCACACAC 1 chr2L:9333453-9333573 ( 14) GCACACAC 1 chr3R:5231745-5231865 ( 49) GCACACAC 1 chr3L:4068533-4068653 ( 104) GCACCCAC 1 chr3R:21587606-21587726 ( 89) GCACCCAC 1 chr3L:18621726-18621846 ( 70) GCACCCAC 1 chrX:20159073-20159193 ( 9) ACACACAC 1 chr3L:21025144-21025264 ( 107) ACACACAC 1 chr2R:13957717-13957837 ( 98) ACACACAC 1 chr3L:5579927-5580047 ( 37) ACACACAC 1 chr3R:20007844-20007964 ( 8) GCACACAT 1 chrX:2742208-2742328 ( 77) GCACACAT 1 chr2L:20673879-20673999 ( 81) GCACACTC 1 chr3L:11789137-11789257 ( 48) ACACCCAC 1 chr2L:7189787-7189907 ( 9) ACACCCAC 1 chr3R:14007668-14007788 ( 31) GCACCCAT 1 chr3R:27929340-27929460 ( 30) GCACCCAT 1 chr3R:21948828-21948948 ( 53) GCACCCAT 1 chrX:15079368-15079488 ( 36) ACACACAT 1 chr3L:5551130-5551250 ( 87) ACACACTC 1 chrM:4702-4822 ( 40) ACACACTC 1 chr2L:2888819-2888939 ( 86) GCACACTT 1 chr2R:22596900-22597020 ( 6) GCACACTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACACAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2004 E= 4.3e-001 13 -1145 169 -1145 -1145 227 -1145 -1145 177 -1145 -1145 -1145 -1145 227 -1145 -1145 128 47 -1145 -1145 -1145 227 -1145 -1145 148 -1145 -1145 -69 -1145 179 -1145 -2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACACAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 4.3e-001 0.321429 0.000000 0.678571 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.714286 0.285714 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.821429 0.000000 0.000000 0.178571 0.000000 0.714286 0.000000 0.285714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACACAC MEME-5 regular expression -------------------------------------------------------------------------------- [GA]CAC[AC]CA[CT] -------------------------------------------------------------------------------- Time 31.56 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:13524765-13524885 1.10e-02 28_[+4(3.31e-05)]_29_[+2(5.58e-05)]_\ 11_[+2(5.58e-05)]_3_[+2(5.58e-05)]_17 chr2L:20673879-20673999 8.79e-03 40_[+2(9.51e-05)]_32_[+5(5.37e-05)]_\ 32 chr3R:30005489-30005609 3.20e-02 44_[+1(4.87e-05)]_68 chr3R:30326774-30326894 8.77e-02 80_[+1(4.87e-05)]_32 chr3L:18080152-18080272 2.05e-02 67_[+1(4.87e-05)]_4_[+1(4.87e-05)]_\ [+1(4.87e-05)]_25 chrX:20468366-20468486 8.37e-01 120 chr2R:7472473-7472593 6.00e-01 120 chr2R:21182827-21182947 8.04e-02 102_[+1(4.87e-05)]_10 chr3L:9847101-9847221 6.00e-03 120 chr3L:11634697-11634817 3.76e-01 21_[+2(9.51e-05)]_91 chr2L:7189787-7189907 5.67e-02 8_[+5(6.34e-05)]_104 chr2R:19157702-19157822 1.33e-01 26_[+2(9.51e-05)]_21_[+2(5.58e-05)]_\ 57 chrM:12849-12969 6.93e-03 120 chr3L:5579927-5580047 2.15e-02 1_[+2(9.51e-05)]_27_[+5(3.04e-05)]_\ 4_[+2(9.51e-05)]_64 chr2L:8002339-8002459 1.79e-03 49_[+4(6.08e-05)]_1_[+2(5.58e-05)]_\ 14_[+4(1.37e-05)]_32 chr3L:18783608-18783728 4.90e-04 88_[+5(3.04e-05)]_24 chr2L:9949233-9949353 3.00e-01 120 chr3L:5943654-5943774 2.03e-02 84_[+1(4.87e-05)]_3_[+1(4.87e-05)]_\ 17 chr2R:15906092-15906212 1.22e-01 63_[+2(5.58e-05)]_12_[+2(9.51e-05)]_\ 6_[+2(5.58e-05)]_15 chrM:4702-4822 5.60e-02 120 chr3R:21948828-21948948 4.76e-02 52_[+5(7.30e-05)]_60 chr2R:17682205-17682325 4.92e-02 18_[+1(4.87e-05)]_94 chr3R:30014038-30014158 1.28e-02 120 chr3R:28831735-28831855 5.52e-03 120 chr3R:12406793-12406913 1.57e-01 87_[+4(1.37e-05)]_25 chr2R:13023076-13023196 5.14e-03 56_[+1(4.87e-05)]_2_[+1(4.87e-05)]_\ 46 chrX:9344245-9344365 2.03e-01 43_[+2(5.58e-05)]_33_[+2(5.58e-05)]_\ 28 chr3L:9357976-9358096 4.69e-02 36_[+2(9.51e-05)]_76 chr2R:10847402-10847522 9.50e-01 120 chrX:17488569-17488689 3.45e-01 120 chr3R:20556858-20556978 3.75e-01 120 chr3R:5231745-5231865 1.45e-01 5_[+5(5.37e-05)]_23_[+5(3.04e-05)]_\ 4_[+5(9.80e-06)]_64 chrX:19485218-19485338 1.79e-02 41_[+3(7.97e-05)]_71 chr2R:22596900-22597020 1.48e-01 120 chr2L:8007287-8007407 3.92e-01 120 chr2R:18879207-18879327 2.58e-03 20_[+1(8.40e-05)]_79_[+2(5.58e-05)]_\ 5 chrX:11522092-11522212 4.74e-02 60_[+2(5.58e-05)]_52 chr3L:9367581-9367701 2.75e-01 54_[+2(5.58e-05)]_22_[+2(5.58e-05)]_\ 28 chrM:5988-6108 9.93e-01 120 chr2R:22571971-22572091 4.29e-01 120 chr2L:9231880-9232000 2.26e-01 [+2(5.58e-05)]_112 chrX:9139277-9139397 1.63e-01 39_[+4(1.37e-05)]_73 chr2L:18831340-18831460 3.27e-01 120 chr3L:16002540-16002660 2.06e-04 23_[+5(3.04e-05)]_70_[+1(4.87e-05)]_\ 11 chr3R:21024283-21024403 9.65e-02 50_[+2(5.58e-05)]_62 chr3R:23734988-23735108 8.23e-01 120 chr3L:9335726-9335846 1.59e-01 120 chr3R:8939825-8939945 7.79e-02 4_[+4(6.08e-05)]_108 chr2L:16590487-16590607 1.80e-01 34_[+2(9.51e-05)]_78 chr3L:18621726-18621846 5.17e-03 2_[+3(4.44e-05)]_59_[+5(1.67e-05)]_\ 43 chr3R:23728234-23728354 7.28e-02 46_[+1(4.87e-05)]_[+1(4.87e-05)]_58 chrX:17726088-17726208 2.09e-02 38_[+1(8.40e-05)]_11_[+1(8.40e-05)]_\ [+3(2.57e-05)]_47 chr3R:21587606-21587726 3.01e-03 65_[+4(8.73e-05)]_6_[+4(8.73e-05)]_\ 1_[+5(1.67e-05)]_24 chr3R:9389098-9389218 3.29e-03 85_[+4(1.37e-05)]_27 chr2R:11651128-11651248 5.59e-02 5_[+3(2.57e-05)]_67_[+3(4.44e-05)]_\ 32 chr3L:19091777-19091897 2.83e-02 120 chr2R:12946367-12946487 1.56e-01 51_[+4(6.08e-05)]_61 chr3L:16886568-16886688 1.27e-01 120 chr3R:8971962-8972082 2.15e-03 82_[+1(4.87e-05)]_30 chr2L:524549-524669 1.58e-01 69_[+4(2.33e-05)]_43 chr2R:13478521-13478641 1.23e-01 120 chrX:20166803-20166923 1.34e-01 77_[+4(1.37e-05)]_35 chrX:3189913-3190033 1.98e-01 [+2(5.58e-05)]_[+2(9.51e-05)]_104 chr2R:18313165-18313285 2.07e-01 120 chr2L:7971512-7971632 7.52e-02 95_[+1(4.87e-05)]_17 chr3L:5551130-5551250 2.97e-02 67_[+2(9.51e-05)]_24_[+2(5.58e-05)]_\ 13 chr3L:7835379-7835499 3.23e-01 120 chrX:17732217-17732337 5.37e-02 25_[+2(9.51e-05)]_78_[+2(5.58e-05)]_\ 1 chr3L:12515718-12515838 4.25e-02 120 chr2R:13994597-13994717 8.72e-01 120 chrX:13644777-13644897 1.79e-01 120 chrX:6632037-6632157 1.82e-02 23_[+3(4.44e-05)]_17_[+1(4.87e-05)]_\ 15_[+3(7.97e-05)]_41 chr2R:15848601-15848721 3.52e-01 120 chr3L:4068533-4068653 1.72e-02 103_[+5(1.67e-05)]_9 chr2R:10572204-10572324 3.03e-03 35_[+3(2.57e-05)]_77 chrX:19359270-19359390 2.11e-01 47_[+2(5.58e-05)]_7_[+2(5.58e-05)]_\ 50 chr3R:26464506-26464626 5.02e-03 82_[+4(1.37e-05)]_30 chr2R:23432146-23432266 3.71e-02 66_[+1(8.40e-05)]_46 chr3R:23763888-23764008 9.49e-01 120 chr2R:21389306-21389426 5.12e-01 120 chr3L:21237145-21237265 5.25e-03 33_[+2(5.58e-05)]_9_[+2(9.51e-05)]_\ 52_[+3(4.44e-05)]_2 chrX:21055214-21055334 3.24e-02 53_[+2(9.51e-05)]_59 chr2R:22586977-22587097 6.66e-03 120 chr3R:14557580-14557700 3.03e-02 29_[+1(4.87e-05)]_22_[+3(7.97e-05)]_\ 53 chr2L:121628-121748 1.21e-02 120 chrX:2742208-2742328 9.21e-05 [+1(4.87e-05)]_68_[+5(4.41e-05)]_36 chrX:1908956-1909076 4.11e-01 120 chr2L:18752162-18752282 5.88e-01 120 chr3L:2553239-2553359 4.14e-02 12_[+1(8.40e-05)]_100 chr2R:19697466-19697586 2.01e-01 60_[+2(5.58e-05)]_52 chr3L:11557326-11557446 3.29e-01 120 chr3R:10588814-10588934 1.22e-02 91_[+1(4.87e-05)]_21 chr3L:11789137-11789257 6.51e-02 47_[+5(6.34e-05)]_65 chr3R:13647092-13647212 5.01e-01 120 chr2L:2806345-2806465 3.42e-01 120 chr2R:21495537-21495657 4.27e-01 120 chrX:7194779-7194899 2.09e-02 44_[+1(8.40e-05)]_68 chr2L:9333453-9333573 4.18e-03 13_[+5(9.80e-06)]_99 chrX:13936355-13936475 4.82e-01 120 chr3L:11284343-11284463 1.97e-01 120 chr3L:12915620-12915740 2.02e-02 97_[+3(4.44e-05)]_15 chr3L:2817992-2818112 2.93e-02 45_[+3(7.97e-05)]_67 chr3R:27706164-27706284 1.64e-01 12_[+4(1.37e-05)]_100 chr3L:19234520-19234640 1.95e-02 16_[+2(9.51e-05)]_96 chr2R:18355960-18356080 9.54e-03 31_[+1(4.87e-05)]_37_[+3(7.97e-05)]_\ 36 chr3L:17238298-17238418 9.80e-02 12_[+3(4.44e-05)]_100 chr2L:7207812-7207932 1.10e-01 37_[+4(1.37e-05)]_75 chr3R:25493942-25494062 8.31e-01 120 chr2R:18566188-18566308 5.38e-02 120 chr3R:7075034-7075154 4.53e-01 120 chr2R:6159876-6159996 1.02e-01 120 chr2R:6869667-6869787 4.09e-01 120 chr2R:7533863-7533983 4.53e-01 120 chr3R:10093561-10093681 9.35e-02 37_[+1(8.40e-05)]_75 chr2R:22545260-22545380 2.87e-03 86_[+2(5.58e-05)]_26 chr2L:4028118-4028238 8.74e-01 120 chr3R:27929340-27929460 2.63e-01 29_[+5(7.30e-05)]_83 chr3R:22140183-22140303 3.78e-02 62_[+3(7.97e-05)]_7_[+1(8.40e-05)]_\ 7_[+3(7.97e-05)]_20 chr3R:11646994-11647114 1.36e-01 71_[+2(5.58e-05)]_41 chr2R:21543354-21543474 1.26e-03 69_[+3(2.57e-05)]_2_[+1(4.87e-05)]_\ 33 chr2L:7879659-7879779 2.48e-02 92_[+2(9.51e-05)]_20 chr3L:8358227-8358347 7.70e-01 120 chr3L:6155263-6155383 2.08e-02 30_[+1(4.87e-05)]_9_[+1(4.87e-05)]_\ 65 chr3R:20784921-20785041 3.27e-01 120 chrM:11260-11380 1.76e-01 120 chrX:8159084-8159204 9.98e-01 120 chrX:13285273-13285393 1.18e-01 120 chr3R:26535799-26535919 2.43e-02 55_[+2(9.51e-05)]_35_[+2(5.58e-05)]_\ 14 chrX:13406441-13406561 3.08e-01 120 chrX:10932358-10932478 3.35e-01 55_[+2(5.58e-05)]_57 chr3R:10189625-10189745 5.30e-03 54_[+1(8.40e-05)]_58 chr3L:2428816-2428936 4.18e-03 37_[+5(9.80e-06)]_75 chr2R:17396014-17396134 5.60e-03 58_[+3(2.57e-05)]_38_[+3(4.44e-05)]_\ 8 chr3R:21938525-21938645 9.06e-03 9_[+3(7.97e-05)]_34_[+3(4.44e-05)]_\ 61 chr2L:13545882-13546002 3.62e-02 48_[+2(9.51e-05)]_64 chr3L:3420426-3420546 7.91e-02 120 chr3L:2873233-2873353 7.29e-02 120 chrX:6708209-6708329 5.40e-03 120 chr2R:13957717-13957837 1.46e-03 67_[+2(5.58e-05)]_20_[+5(3.04e-05)]_\ 17 chrX:18483640-18483760 4.13e-01 120 chr2L:12055953-12056073 9.73e-01 120 chrX:12672792-12672912 2.55e-02 64_[+3(4.44e-05)]_48 chrX:21045478-21045598 1.87e-04 42_[+3(7.97e-05)]_26_[+3(2.57e-05)]_\ 28_[+2(9.51e-05)] chr2L:3159124-3159244 2.32e-05 3_[+1(8.40e-05)]_7_[+3(2.57e-05)]_\ 41_[+5(4.41e-05)]_2_[+5(9.80e-06)]_35 chr3R:20007844-20007964 6.44e-02 7_[+5(4.41e-05)]_105 chr3L:13435319-13435439 1.92e-03 55_[+3(2.57e-05)]_57 chr3R:16253122-16253242 2.75e-03 35_[+1(4.87e-05)]_33_[+3(7.97e-05)]_\ 36 chr3R:21630541-21630661 6.02e-01 120 chr2R:11690675-11690795 1.40e-01 120 chr3R:23386199-23386319 5.37e-01 120 chr2L:5618098-5618218 1.90e-02 55_[+3(4.44e-05)]_57 chr3L:6266236-6266356 8.76e-01 120 chr3L:10365080-10365200 4.24e-02 [+2(5.58e-05)]_7_[+2(5.58e-05)]_97 chr3L:21894887-21895007 9.12e-01 120 chr2R:20996663-20996783 8.14e-02 18_[+2(5.58e-05)]_67_[+2(5.58e-05)]_\ 19 chr2L:20674092-20674212 1.01e-01 120 chr2R:18314663-18314783 9.02e-04 57_[+1(4.87e-05)]_55 chr2R:10558239-10558359 8.50e-02 40_[+2(5.58e-05)]_72 chr3L:10352240-10352360 1.37e-02 54_[+1(4.87e-05)]_2_[+1(4.87e-05)]_\ 4_[+1(4.87e-05)]_2_[+3(2.57e-05)]_26 chr3L:10680960-10681080 1.90e-02 120 chr3L:19295010-19295130 4.01e-01 120 chr3R:19074326-19074446 2.39e-01 120 chr2R:18746888-18747008 7.48e-01 120 chr3L:8822076-8822196 4.85e-01 120 chr2R:14569630-14569750 2.98e-04 9_[+1(4.87e-05)]_103 chr3L:21122795-21122915 9.30e-04 67_[+4(1.37e-05)]_45 chr2R:10474722-10474842 2.18e-04 29_[+1(4.87e-05)]_24_[+4(1.37e-05)]_\ 8_[+1(4.87e-05)]_35 chr2L:19156105-19156225 2.48e-02 10_[+3(7.97e-05)]_23_[+1(4.87e-05)]_\ 71 chr3L:20914534-20914654 9.86e-01 120 chr2R:23306081-23306201 3.70e-01 120 chr2L:6447693-6447813 7.62e-01 120 chr2R:12279474-12279594 1.86e-02 45_[+1(4.87e-05)]_67 chr3L:18221435-18221555 1.53e-01 42_[+2(5.58e-05)]_70 chrX:13747759-13747879 4.42e-01 120 chr2R:9133413-9133533 2.44e-01 120 chr3R:17706520-17706640 1.76e-01 9_[+2(5.58e-05)]_103 chr2R:17435700-17435820 7.75e-02 18_[+2(9.51e-05)]_43_[+2(9.51e-05)]_\ 11_[+2(9.51e-05)]_24 chrX:8592774-8592894 4.32e-05 30_[+3(4.44e-05)]_34_[+2(5.58e-05)]_\ 13_[+4(1.37e-05)]_19 chr2L:16588911-16589031 2.55e-01 7_[+2(9.51e-05)]_105 chr3L:8013990-8014110 1.69e-01 5_[+2(5.58e-05)]_25_[+2(5.58e-05)]_\ [+2(5.58e-05)]_[+2(5.58e-05)]_58 chr2R:14081682-14081802 7.86e-02 120 chr3L:18790999-18791119 2.40e-02 112_[+1(8.40e-05)] chr2R:11364929-11365049 1.00e+00 120 chr3R:9950012-9950132 5.19e-03 71_[+3(2.57e-05)]_41 chr2R:14082365-14082485 4.82e-01 120 chr2R:7758962-7759082 4.00e-01 120 chr2R:11205396-11205516 4.37e-02 2_[+2(9.51e-05)]_110 chr3R:14007668-14007788 7.91e-04 30_[+5(7.30e-05)]_30_[+1(4.87e-05)]_\ 44 chrX:2334705-2334825 5.09e-02 105_[+4(1.37e-05)]_7 chr3L:1810375-1810495 1.37e-01 50_[+2(9.51e-05)]_62 chrX:11710480-11710600 1.72e-02 37_[+1(8.40e-05)]_2_[+1(8.40e-05)]_\ 65 chr3R:30822028-30822148 8.12e-03 67_[+1(4.87e-05)]_45 chr3L:2805666-2805786 1.95e-03 41_[+3(4.44e-05)]_63_[+1(4.87e-05)] chr3L:11368547-11368667 1.33e-01 120 chrX:18544904-18545024 1.83e-01 106_[+2(5.58e-05)]_6 chrM:12170-12290 5.58e-01 120 chr3R:29280808-29280928 7.35e-01 120 chrM:13222-13342 5.66e-01 120 chr3R:27194159-27194279 3.32e-01 120 chr2R:11178243-11178363 2.29e-03 62_[+1(4.87e-05)]_26_[+3(2.57e-05)]_\ 16 chr2R:22554062-22554182 7.16e-01 120 chr2L:11516733-11516853 6.66e-01 120 chr2R:11323990-11324110 8.48e-01 120 chr2R:17439612-17439732 2.34e-02 2_[+5(9.80e-06)]_[+5(3.04e-05)]_102 chr3L:1861462-1861582 8.21e-02 1_[+3(4.44e-05)]_111 chr3R:26496454-26496574 4.18e-01 120 chr3R:21195710-21195830 2.17e-01 120 chr3R:24283702-24283822 3.44e-01 120 chr2R:11366578-11366698 9.99e-01 120 chr3R:15091793-15091913 1.73e-02 35_[+3(7.97e-05)]_4_[+1(4.87e-05)]_\ 8_[+1(4.87e-05)]_20_[+3(4.44e-05)]_21 chr3R:7651141-7651261 7.10e-01 120 chr3R:14020667-14020787 2.69e-03 8_[+5(9.80e-06)]_61_[+2(9.51e-05)]_\ 35 chr3L:9848937-9849057 2.62e-01 [+2(5.58e-05)]_30_[+2(5.58e-05)]_74 chr2L:13893591-13893711 8.42e-01 120 chr2L:8009453-8009573 2.21e-01 54_[+2(5.58e-05)]_3_[+2(9.51e-05)]_\ 47 chr2L:2888819-2888939 1.55e-02 120 chrX:7540828-7540948 7.34e-02 51_[+2(9.51e-05)]_61 chr2R:19617273-19617393 2.59e-02 43_[+2(9.51e-05)]_69 chr2L:7910127-7910247 7.91e-02 23_[+2(5.58e-05)]_89 chr3L:7993719-7993839 6.38e-02 21_[+2(5.58e-05)]_91 chr2L:7790673-7790793 1.49e-01 120 chrX:13238633-13238753 3.71e-01 120 chr2R:21386700-21386820 9.36e-01 120 chr3L:16190971-16191091 1.34e-02 42_[+3(4.44e-05)]_70 chrX:12890471-12890591 2.68e-01 120 chr2L:2804674-2804794 2.54e-01 120 chr3R:20286216-20286336 1.63e-01 108_[+3(7.97e-05)]_4 chr2R:11384148-11384268 9.27e-01 120 chrX:10266152-10266272 2.62e-01 120 chr3L:2835920-2836040 1.30e-02 120 chr2L:2802705-2802825 1.59e-01 105_[+4(1.37e-05)]_7 chrX:7290967-7291087 2.61e-02 39_[+1(4.87e-05)]_73 chr3R:9237413-9237533 1.01e-03 32_[+3(2.57e-05)]_8_[+1(4.87e-05)]_\ 64 chr2L:18457121-18457241 1.95e-03 24_[+4(6.08e-05)]_28_[+5(3.04e-05)]_\ 17_[+5(9.80e-06)]_27 chr3R:22754607-22754727 5.57e-01 120 chr3L:21025144-21025264 2.10e-03 104_[+5(3.04e-05)]_8 chrX:17886900-17887020 4.17e-03 30_[+2(5.58e-05)]_1_[+5(9.80e-06)]_\ 9_[+2(5.58e-05)]_4_[+5(5.37e-05)]_44 chr3R:31768342-31768462 9.70e-03 120 chr3L:1653012-1653132 5.56e-01 120 chr2L:1125708-1125828 3.95e-02 95_[+4(8.73e-05)]_17 chrX:20159073-20159193 2.47e-02 8_[+5(3.04e-05)]_4_[+5(5.37e-05)]_\ 92 chrX:1612045-1612165 5.90e-01 120 chr2R:17811087-17811207 5.65e-01 120 chr3L:3817086-3817206 5.20e-02 38_[+4(1.37e-05)]_74 chr3R:8792705-8792825 5.88e-02 89_[+1(4.87e-05)]_23 chrX:15079368-15079488 3.83e-03 35_[+5(9.89e-05)]_48_[+1(4.87e-05)]_\ 21 chr2L:18122303-18122423 7.61e-03 55_[+4(2.33e-05)]_57 chr3R:24614250-24614370 1.53e-02 120 chr2R:24955794-24955914 3.14e-01 22_[+2(5.58e-05)]_90 chrX:1119359-1119479 1.34e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************