******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1621.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:6343523-6343643 1.0000 120 chr2L:18811033-18811153 1.0000 120 chr2R:20006935-20007055 1.0000 120 chr3L:1821221-1821341 1.0000 120 chr2R:7972474-7972594 1.0000 120 chr2R:7493287-7493407 1.0000 120 chr3R:5385676-5385796 1.0000 120 chr3L:15762552-15762672 1.0000 120 chr2L:1147748-1147868 1.0000 120 chr2L:2151663-2151783 1.0000 120 chr3L:11715395-11715515 1.0000 120 chr2R:10871304-10871424 1.0000 120 chr3L:177964-178084 1.0000 120 chr4:380592-380712 1.0000 120 chr3L:736709-736829 1.0000 120 chr2R:13403800-13403920 1.0000 120 chr3L:3162106-3162226 1.0000 120 chr3L:7094796-7094916 1.0000 120 chr3L:8151985-8152105 1.0000 120 chr2R:21076807-21076927 1.0000 120 chr2R:22099398-22099518 1.0000 120 chr3R:26718014-26718134 1.0000 120 chr2R:24972965-24973085 1.0000 120 chr3L:15958717-15958837 1.0000 120 chr3L:815970-816090 1.0000 120 chr3L:9396775-9396895 1.0000 120 chr2L:7189890-7190010 1.0000 120 chr3R:23026699-23026819 1.0000 120 chr2R:24928246-24928366 1.0000 120 chrX:5724259-5724379 1.0000 120 chr3R:8658841-8658961 1.0000 120 chr2R:21168184-21168304 1.0000 120 chr3R:27087661-27087781 1.0000 120 chr2R:7492362-7492482 1.0000 120 chr2L:128597-128717 1.0000 120 chr3R:20774230-20774350 1.0000 120 chr2R:7260867-7260987 1.0000 120 chr3R:26227076-26227196 1.0000 120 chrX:18777071-18777191 1.0000 120 chrX:11679619-11679739 1.0000 120 chr2R:9577429-9577549 1.0000 120 chr3R:13767343-13767463 1.0000 120 chr2R:22257814-22257934 1.0000 120 chrX:21123691-21123811 1.0000 120 chr2R:8131973-8132093 1.0000 120 chr3R:7174911-7175031 1.0000 120 chr3R:7967001-7967121 1.0000 120 chr2R:21037089-21037209 1.0000 120 chr3R:14739838-14739958 1.0000 120 chr2R:6648686-6648806 1.0000 120 chr2L:717669-717789 1.0000 120 chr3L:20310419-20310539 1.0000 120 chr3L:21892923-21893043 1.0000 120 chr3R:5213476-5213596 1.0000 120 chr2L:20106760-20106880 1.0000 120 chr3R:30820912-30821032 1.0000 120 chr3R:29616191-29616311 1.0000 120 chr3R:5028508-5028628 1.0000 120 chr3R:25205696-25205816 1.0000 120 chr3R:21583534-21583654 1.0000 120 chr2R:24163022-24163142 1.0000 120 chr2R:14290220-14290340 1.0000 120 chr2L:13827691-13827811 1.0000 120 chrX:16783967-16784087 1.0000 120 chr2R:15322750-15322870 1.0000 120 chrX:18486801-18486921 1.0000 120 chrX:5876777-5876897 1.0000 120 chr3L:1269139-1269259 1.0000 120 chr2L:15406033-15406153 1.0000 120 chr3R:13939819-13939939 1.0000 120 chr3L:16651274-16651394 1.0000 120 chr3R:15807273-15807393 1.0000 120 chrX:6660057-6660177 1.0000 120 chr2R:14965629-14965749 1.0000 120 chr2L:5805371-5805491 1.0000 120 chr3L:11832925-11833045 1.0000 120 chr2R:21613024-21613144 1.0000 120 chr2R:7146900-7147020 1.0000 120 chrX:11891895-11892015 1.0000 120 chr2R:8655949-8656069 1.0000 120 chrX:15465479-15465599 1.0000 120 chrX:13949058-13949178 1.0000 120 chr2R:24162353-24162473 1.0000 120 chr3R:31504854-31504974 1.0000 120 chr2R:8091672-8091792 1.0000 120 chr3R:14820154-14820274 1.0000 120 chr2L:13804812-13804932 1.0000 120 chrX:476495-476615 1.0000 120 chr3L:5551282-5551402 1.0000 120 chr3L:315244-315364 1.0000 120 chr3R:13304698-13304818 1.0000 120 chrX:11123629-11123749 1.0000 120 chr3L:5844374-5844494 1.0000 120 chr3L:8523457-8523577 1.0000 120 chr2R:18194049-18194169 1.0000 120 chr2L:19990454-19990574 1.0000 120 chr3R:14276307-14276427 1.0000 120 chr2R:5993949-5994069 1.0000 120 chr2R:7736018-7736138 1.0000 120 chrX:6683719-6683839 1.0000 120 chr3L:17379390-17379510 1.0000 120 chr2L:18312988-18313108 1.0000 120 chr3R:20576955-20577075 1.0000 120 chr2L:5805580-5805700 1.0000 120 chr3L:9853311-9853431 1.0000 120 chr2R:15485241-15485361 1.0000 120 chr2L:6919654-6919774 1.0000 120 chr2L:109147-109267 1.0000 120 chr2R:18692413-18692533 1.0000 120 chr2R:14770832-14770952 1.0000 120 chr2R:19963779-19963899 1.0000 120 chr3R:24229917-24230037 1.0000 120 chr2L:14531641-14531761 1.0000 120 chr3L:10943119-10943239 1.0000 120 chr3L:15188581-15188701 1.0000 120 chr2L:16590485-16590605 1.0000 120 chr3L:19707913-19708033 1.0000 120 chr3L:16941463-16941583 1.0000 120 chr3L:9704520-9704640 1.0000 120 chr3L:282318-282438 1.0000 120 chr2R:15847290-15847410 1.0000 120 chr2R:15680067-15680187 1.0000 120 chr3L:17879052-17879172 1.0000 120 chr3R:4307935-4308055 1.0000 120 chr3L:22444027-22444147 1.0000 120 chr2L:16353179-16353299 1.0000 120 chr2L:840613-840733 1.0000 120 chr3R:13011676-13011796 1.0000 120 chr3L:12028691-12028811 1.0000 120 chr3R:28861698-28861818 1.0000 120 chr2R:8318261-8318381 1.0000 120 chr2L:564064-564184 1.0000 120 chr2R:17761248-17761368 1.0000 120 chr2R:6789025-6789145 1.0000 120 chr3R:31611492-31611612 1.0000 120 chr3L:5542501-5542621 1.0000 120 chr2R:13464237-13464357 1.0000 120 chr3L:1884846-1884966 1.0000 120 chrX:19485190-19485310 1.0000 120 chrX:1846491-1846611 1.0000 120 chr2R:6562755-6562875 1.0000 120 chr2R:23843227-23843347 1.0000 120 chr2L:13203240-13203360 1.0000 120 chr3L:4349442-4349562 1.0000 120 chr3R:29723435-29723555 1.0000 120 chr2L:7573637-7573757 1.0000 120 chr3L:9399962-9400082 1.0000 120 chr3R:13526145-13526265 1.0000 120 chr2R:20579343-20579463 1.0000 120 chrX:13154972-13155092 1.0000 120 chr3L:20497256-20497376 1.0000 120 chr3L:12530086-12530206 1.0000 120 chrX:17578547-17578667 1.0000 120 chr3L:12571611-12571731 1.0000 120 chr3R:21204917-21205037 1.0000 120 chr2L:20965163-20965283 1.0000 120 chr3L:1756273-1756393 1.0000 120 chrX:8176404-8176524 1.0000 120 chr2L:7157592-7157712 1.0000 120 chr3R:9625401-9625521 1.0000 120 chr2L:5236544-5236664 1.0000 120 chr3R:19624578-19624698 1.0000 120 chr3R:10125722-10125842 1.0000 120 chr2L:3557624-3557744 1.0000 120 chr2L:1183960-1184080 1.0000 120 chr2L:5050000-5050120 1.0000 120 chr2R:18631806-18631926 1.0000 120 chr3L:21254523-21254643 1.0000 120 chrX:2455792-2455912 1.0000 120 chr2L:16255670-16255790 1.0000 120 chr3R:16969529-16969649 1.0000 120 chr2L:6273883-6274003 1.0000 120 chr3R:31743381-31743501 1.0000 120 chr3L:11366668-11366788 1.0000 120 chr3L:15246527-15246647 1.0000 120 chr3L:4227420-4227540 1.0000 120 chr2R:12942656-12942776 1.0000 120 chr3R:11859292-11859412 1.0000 120 chr2R:24081619-24081739 1.0000 120 chr2L:1887865-1887985 1.0000 120 chr2L:2009763-2009883 1.0000 120 chrX:1927568-1927688 1.0000 120 chrX:19522802-19522922 1.0000 120 chr3R:16254005-16254125 1.0000 120 chr2L:2767791-2767911 1.0000 120 chr3R:21619881-21620001 1.0000 120 chr2L:6791976-6792096 1.0000 120 chrX:18483757-18483877 1.0000 120 chr3L:11365675-11365795 1.0000 120 chr3L:11609484-11609604 1.0000 120 chr3R:21646355-21646475 1.0000 120 chr2R:8143152-8143272 1.0000 120 chr3R:6973380-6973500 1.0000 120 chr2L:5528058-5528178 1.0000 120 chr3R:11763613-11763733 1.0000 120 chr2R:21847844-21847964 1.0000 120 chr2R:20230920-20231040 1.0000 120 chr2R:23706966-23707086 1.0000 120 chr2R:7463043-7463163 1.0000 120 chr3R:27919233-27919353 1.0000 120 chr2L:7065850-7065970 1.0000 120 chr2L:4905703-4905823 1.0000 120 chrX:1614531-1614651 1.0000 120 chr2L:9330643-9330763 1.0000 120 chr2R:23798362-23798482 1.0000 120 chr3R:25094704-25094824 1.0000 120 chr2L:560318-560438 1.0000 120 chr2L:7810641-7810761 1.0000 120 chr3R:17795350-17795470 1.0000 120 chr2L:8031697-8031817 1.0000 120 chrX:16651198-16651318 1.0000 120 chr2L:18119898-18120018 1.0000 120 chr2R:13506311-13506431 1.0000 120 chr2L:7466390-7466510 1.0000 120 chr2L:22756365-22756485 1.0000 120 chr3R:18987678-18987798 1.0000 120 chr3L:4692781-4692901 1.0000 120 chr3L:16196756-16196876 1.0000 120 chr3R:13710773-13710893 1.0000 120 chr3R:13524720-13524840 1.0000 120 chr3L:9401153-9401273 1.0000 120 chr2R:17639059-17639179 1.0000 120 chr2R:7206627-7206747 1.0000 120 chr2R:23727097-23727217 1.0000 120 chr3R:9057947-9058067 1.0000 120 chr3L:5927712-5927832 1.0000 120 chr3L:18240679-18240799 1.0000 120 chr3L:18243743-18243863 1.0000 120 chr2L:18936223-18936343 1.0000 120 chr3R:28914240-28914360 1.0000 120 chr3L:9763573-9763693 1.0000 120 chr2R:8132181-8132301 1.0000 120 chr2L:1886963-1887083 1.0000 120 chr2L:6966486-6966606 1.0000 120 chr3L:10968785-10968905 1.0000 120 chr2R:17439589-17439709 1.0000 120 chrX:15835456-15835576 1.0000 120 chr2R:16095697-16095817 1.0000 120 chrX:10585307-10585427 1.0000 120 chr3L:21710680-21710800 1.0000 120 chr3L:12040598-12040718 1.0000 120 chr2R:18271170-18271290 1.0000 120 chr3R:22539853-22539973 1.0000 120 chr3L:21893739-21893859 1.0000 120 chr3R:30532432-30532552 1.0000 120 chr3R:11865275-11865395 1.0000 120 chr3R:30005484-30005604 1.0000 120 chr2L:13004508-13004628 1.0000 120 chr3L:14978594-14978714 1.0000 120 chr2L:5096265-5096385 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG1621/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1621.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.25 C 0.259 G 0.256 T 0.236 Background letter frequencies (from file dataset with add-one prior applied): A 0.25 C 0.259 G 0.256 T 0.236 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTT MEME-1 width = 8 sites = 33 llr = 299 E-value = 5.0e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1::::: pos.-specific C ::2:1::: probability G ::2:2::: matrix T aa597aaa bits 2.1 ** ** 1.9 ** *** 1.7 ** * *** 1.5 ** * *** Relative 1.3 ** * *** Entropy 1.0 ** * *** (13.1 bits) 0.8 ** ***** 0.6 ** ***** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:30005484-30005604 51 9.62e-06 tctttttcat tttttttt tCGTTGCATT chr3R:11865275-11865395 39 9.62e-06 TGTTTACACT TTTTTTTT TGCGCAGACA chr3R:13710773-13710893 28 9.62e-06 TTGTGTGTTG TTTTTTTT CCGGCTCGCA chr3R:4307935-4308055 64 9.62e-06 GGAACCGCAC TTTTTTTT CACCGTACTG chr2L:15406033-15406153 98 9.62e-06 TTTTTCTGTG TTTTTTTT GCCGTTTTCC chrX:16783967-16784087 30 9.62e-06 TACGCGATTA TTTTTTTT ACGGAAAGTC chr2R:14290220-14290340 102 9.62e-06 CGTTCAGTGT TTTTTTTT TGCCTTTAGT chrX:21123691-21123811 12 9.62e-06 CGACGATCGT TTTTTTTT TCTTCAACGT chr2L:1886963-1887083 108 3.06e-05 GTCTTCTGCG TTCTTTTT TATCT chr3R:28914240-28914360 34 3.06e-05 TTTCGCTTTG TTCTTTTT ATTTCTTTCC chr2R:7463043-7463163 35 3.06e-05 TATCGGTGTT TTCTTTTT GCTCCTGACT chrX:19485190-19485310 81 3.06e-05 gtttttttgc ttgttttt cttgctgttc chr3R:31611492-31611612 24 3.06e-05 ATTCTACGCC TTGTTTTT GCCCGCCGCC chr3L:17379390-17379510 35 3.06e-05 GCTGCTCTTG TTGTTTTT GCTGCTACGG chrX:11123629-11123749 94 3.06e-05 TTCTTCCTTC TTCTTTTT GTTGACAAAT chr2L:13804812-13804932 39 3.06e-05 CAGCGATCGA TTGTTTTT CGCCTTGTCT chr2R:7972474-7972594 100 3.06e-05 GCTTGCGTTG TTGTTTTT AGCTAGTGCG chr3L:5927712-5927832 50 4.11e-05 GCCAGCTGTT TTTTGTTT TGGTGGATGC chr2L:16255670-16255790 39 4.11e-05 CTTTTCTTTC TTTTGTTT GTATTGCCGT chrX:8176404-8176524 41 4.11e-05 tttaacttgc ttttgttt CGCTGTGTGT chr2R:21037089-21037209 2 4.11e-05 C TTTTGTTT TGCTTGTTTA chr2L:3557624-3557744 25 5.13e-05 ATTTTGTAAA TTATTTTT AAGAGCTCAT chr2L:5236544-5236664 49 5.13e-05 GTTGCCACGT TTATTTTT TCCGGGCTAT chr2L:13203240-13203360 106 5.13e-05 ACCATCGGTA TTATTTTT ACAGTGG chr2L:7065850-7065970 89 6.18e-05 TTTTATCCGG TTTTCTTT CCCGGCAGCT chrX:476495-476615 25 6.18e-05 AATTGCATGG TTTTCTTT GTGTCTTTAC chr2L:1887865-1887985 109 8.46e-05 TCCTATTTAT TTCTGTTT TGTG chr3L:12040598-12040718 42 1.19e-04 cttcggtctc ttgtcttT TCTACTCCGG chr2L:6966486-6966606 9 1.19e-04 ATTTGAGG TTATGTTT TCCCAGACTT chr2R:14965629-14965749 84 1.19e-04 TCGTCGGCGC TTCTCTTT TTTCGGGCTC chr2L:7466390-7466510 103 1.51e-04 CTCGTTTTGG TTTGTTTT GGCTTTTTGG chrX:11679619-11679739 9 1.51e-04 GTCGGTTG TTTATTTT ATGCTTCGTC chr3L:20497256-20497376 84 1.61e-04 GCCCGTCCGA TTTTTCTT CCTTTGCGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30005484-30005604 9.6e-06 50_[+1]_62 chr3R:11865275-11865395 9.6e-06 38_[+1]_74 chr3R:13710773-13710893 9.6e-06 27_[+1]_85 chr3R:4307935-4308055 9.6e-06 63_[+1]_49 chr2L:15406033-15406153 9.6e-06 97_[+1]_15 chrX:16783967-16784087 9.6e-06 29_[+1]_83 chr2R:14290220-14290340 9.6e-06 101_[+1]_11 chrX:21123691-21123811 9.6e-06 11_[+1]_101 chr2L:1886963-1887083 3.1e-05 107_[+1]_5 chr3R:28914240-28914360 3.1e-05 33_[+1]_79 chr2R:7463043-7463163 3.1e-05 34_[+1]_78 chrX:19485190-19485310 3.1e-05 80_[+1]_32 chr3R:31611492-31611612 3.1e-05 23_[+1]_89 chr3L:17379390-17379510 3.1e-05 34_[+1]_78 chrX:11123629-11123749 3.1e-05 93_[+1]_19 chr2L:13804812-13804932 3.1e-05 38_[+1]_74 chr2R:7972474-7972594 3.1e-05 99_[+1]_13 chr3L:5927712-5927832 4.1e-05 49_[+1]_63 chr2L:16255670-16255790 4.1e-05 38_[+1]_74 chrX:8176404-8176524 4.1e-05 40_[+1]_72 chr2R:21037089-21037209 4.1e-05 1_[+1]_111 chr2L:3557624-3557744 5.1e-05 24_[+1]_88 chr2L:5236544-5236664 5.1e-05 48_[+1]_64 chr2L:13203240-13203360 5.1e-05 105_[+1]_7 chr2L:7065850-7065970 6.2e-05 88_[+1]_24 chrX:476495-476615 6.2e-05 24_[+1]_88 chr2L:1887865-1887985 8.5e-05 108_[+1]_4 chr3L:12040598-12040718 0.00012 41_[+1]_71 chr2L:6966486-6966606 0.00012 8_[+1]_104 chr2R:14965629-14965749 0.00012 83_[+1]_29 chr2L:7466390-7466510 0.00015 102_[+1]_10 chrX:11679619-11679739 0.00015 8_[+1]_104 chr3L:20497256-20497376 0.00016 83_[+1]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTT width=8 seqs=33 chr3R:30005484-30005604 ( 51) TTTTTTTT 1 chr3R:11865275-11865395 ( 39) TTTTTTTT 1 chr3R:13710773-13710893 ( 28) TTTTTTTT 1 chr3R:4307935-4308055 ( 64) TTTTTTTT 1 chr2L:15406033-15406153 ( 98) TTTTTTTT 1 chrX:16783967-16784087 ( 30) TTTTTTTT 1 chr2R:14290220-14290340 ( 102) TTTTTTTT 1 chrX:21123691-21123811 ( 12) TTTTTTTT 1 chr2L:1886963-1887083 ( 108) TTCTTTTT 1 chr3R:28914240-28914360 ( 34) TTCTTTTT 1 chr2R:7463043-7463163 ( 35) TTCTTTTT 1 chrX:19485190-19485310 ( 81) TTGTTTTT 1 chr3R:31611492-31611612 ( 24) TTGTTTTT 1 chr3L:17379390-17379510 ( 35) TTGTTTTT 1 chrX:11123629-11123749 ( 94) TTCTTTTT 1 chr2L:13804812-13804932 ( 39) TTGTTTTT 1 chr2R:7972474-7972594 ( 100) TTGTTTTT 1 chr3L:5927712-5927832 ( 50) TTTTGTTT 1 chr2L:16255670-16255790 ( 39) TTTTGTTT 1 chrX:8176404-8176524 ( 41) TTTTGTTT 1 chr2R:21037089-21037209 ( 2) TTTTGTTT 1 chr2L:3557624-3557744 ( 25) TTATTTTT 1 chr2L:5236544-5236664 ( 49) TTATTTTT 1 chr2L:13203240-13203360 ( 106) TTATTTTT 1 chr2L:7065850-7065970 ( 89) TTTTCTTT 1 chrX:476495-476615 ( 25) TTTTCTTT 1 chr2L:1887865-1887985 ( 109) TTCTGTTT 1 chr3L:12040598-12040718 ( 42) TTGTCTTT 1 chr2L:6966486-6966606 ( 9) TTATGTTT 1 chr2R:14965629-14965749 ( 84) TTCTCTTT 1 chr2L:7466390-7466510 ( 103) TTTGTTTT 1 chrX:11679619-11679739 ( 9) TTTATTTT 1 chr3L:20497256-20497376 ( 84) TTTTTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 5.0e-006 -1169 -1169 -1169 209 -1169 -1169 -1169 209 -104 -51 -49 113 -304 -1169 -307 200 -1169 -110 -49 156 -1169 -309 -1169 204 -1169 -1169 -1169 209 -1169 -1169 -1169 209 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 5.0e-006 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.121212 0.181818 0.181818 0.515152 0.030303 0.000000 0.030303 0.939394 0.000000 0.121212 0.181818 0.696970 0.000000 0.030303 0.000000 0.969697 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-1 regular expression -------------------------------------------------------------------------------- TTTTTTTT -------------------------------------------------------------------------------- Time 7.47 secs. ******************************************************************************** ******************************************************************************** MOTIF WCTCCGGM MEME-2 width = 8 sites = 61 llr = 472 E-value = 8.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif WCTCCGGM MEME-2 Description -------------------------------------------------------------------------------- Simplified A 61:::::3 pos.-specific C :6:aa:25 probability G :1:::a82 matrix T 42a::::: bits 2.1 * 1.9 **** 1.7 **** 1.5 **** Relative 1.3 ***** Entropy 1.0 * ***** (11.2 bits) 0.8 * ***** 0.6 * ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACTCCGGC consensus TT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCTCCGGM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:16095697-16095817 75 1.74e-05 CGATACTCGC ACTCCGGC CGGCCTGGCC chr2R:7206627-7206747 44 1.74e-05 CAATGGGCCA ACTCCGGC TGTGAACTAG chr2L:6273883-6274003 17 1.74e-05 TGATCCGTAG ACTCCGGC CCGGCGACGT chr3L:11832925-11833045 73 1.74e-05 GGTGTTCTTC ACTCCGGC CGGAATCTTA chr3R:21583534-21583654 66 1.74e-05 aacaaCATTA ACTCCGGC ATTGACGCAA chr3R:30532432-30532552 101 3.38e-05 CTCGCTCTGC TCTCCGGC GTCGGTTCCG chr2L:18936223-18936343 42 3.38e-05 GAACACGCCC TCTCCGGC GTGCGAAAGG chr2L:5528058-5528178 96 3.38e-05 CGAATCTGAT TCTCCGGC GCATTTCAAA chr3L:12571611-12571731 74 3.38e-05 GGATCAGCCA TCTCCGGC TTTTCAATGG chr3L:315244-315364 64 3.38e-05 CCCGAGCAGT TCTCCGGC CATTCCGTTC chr2L:717669-717789 76 3.38e-05 tcctacttca tctccgGC ATTTCAGTTT chrX:11679619-11679739 91 3.38e-05 ACTCACACTC TCTCCGGC GGAGTCGTGT chr2L:18811033-18811153 17 3.38e-05 tgcgatacga tctccggc gatccgaGTG chr2L:128597-128717 31 5.06e-05 GCGACAGAGT ACTCCGGA GAACTAGCTC chr3L:815970-816090 98 5.06e-05 cggacaacgg actccgga tagcagacta chr3R:26718014-26718134 65 5.06e-05 CGGTGCAGCC ACTCCGGA ATTTCCCCAC chr3R:29723435-29723555 78 6.65e-05 GCAGTGCGAA TCTCCGGA GAATCCACAA chr3R:8658841-8658961 19 6.65e-05 TACGTGCAAA TCTCCGGA ATACACAGAT chr3R:24229917-24230037 64 8.23e-05 TATTCCTGCG ATTCCGGC AAATGACACG chr2R:18194049-18194169 88 8.23e-05 CATCTTCACA ATTCCGGC TCCATTACCA chr2L:1147748-1147868 50 8.23e-05 CGTTATCGAT ATTCCGGC AGAAACATAT chr3R:30005484-30005604 69 9.73e-05 tCGTTGCATT TTTCCGGC CGGCGGGGCA chr2L:18119898-18120018 111 9.73e-05 CGTAGTCAAT TTTCCGGC AC chr3L:12040598-12040718 53 1.14e-04 tgtcttTTCT ACTCCGGG CTGTCATTCG chrX:476495-476615 63 1.14e-04 GCCAAAATCT ACTCCGGG AAAGTGAACA chrX:18777071-18777191 40 1.14e-04 AGATCCCCCG ACTCCGGG CGTCTGGGGC chr3R:25094704-25094824 11 1.48e-04 TGGTCCAAAC TCTCCGGG CAACCCATTT chr3R:16969529-16969649 81 1.48e-04 ATGGATTTAG ACTCCGCC CCTTTTCGAA chr3L:282318-282438 13 1.48e-04 AGCAAGCTGG ACTCCGCC GCACTCTGTC chr2R:24162353-24162473 29 1.48e-04 CAAGCTGCGA TCTCCGGG CGCAGTGGCA chr2L:15406033-15406153 35 1.48e-04 AATGTCCGGC TCTCCGGG CAGCTCGGTT chr2R:14290220-14290340 16 1.48e-04 CGTCTCCATC TCTCCGGG CTTTAACAAT chr3R:14739838-14739958 47 1.48e-04 AGCTGCGAAA ACTCCGCC GTATAGTTGC chr2L:7810641-7810761 44 1.64e-04 GCAGTTGGAG ATTCCGGA AAGTTGTGAG chr2R:23843227-23843347 1 1.64e-04 . ATTCCGGA ATGCGCTGAG chr3L:11715395-11715515 42 1.64e-04 GGCTTGGGAT ATTCCGGA GTTGGGCGAG chr3L:18243743-18243863 34 1.97e-04 CCGCGCCCCC TCTCCGCC CACGCCCCCT chr3L:5927712-5927832 88 1.97e-04 AGAGCCCAAA AGTCCGGC TTTGTCTATA chr3R:13524720-13524840 77 1.97e-04 CCAATTCCAG AGTCCGGC AAACAACTTG chr3R:31611492-31611612 88 1.97e-04 CCCACTCCGC TCTCCGCC GCTCACGATC chr2L:840613-840733 27 1.97e-04 ATAGTCACCG TCTCCGCC GGATGAGACC chr3L:17879052-17879172 68 1.97e-04 CCGCACTTCG AGTCCGGC GGATCAGAGA chr2R:22257814-22257934 1 1.97e-04 . AGTCCGGC GTATTTTGTC chr3L:21710680-21710800 63 2.29e-04 CTTGCTCGTA AATCCGGC GTATAAAATG chr3L:12530086-12530206 10 2.29e-04 CGTCCGGTT TTTCCGGA CTTTCGAAAT chr2L:19990454-19990574 85 2.29e-04 AGGATCCGGC AATCCGGC TGCAAGAACC chr3R:13304698-13304818 26 2.29e-04 ATGAGAGAGC TTTCCGGA GAAGCTCGAG chr3L:7094796-7094916 56 2.61e-04 ACGAATCGGT TATCCGGC ATTTGGCATT chr3L:15246527-15246647 10 2.78e-04 CGAACGCTG ACTCCGCA TAAAAGCAAA chr3L:1821221-1821341 110 2.78e-04 GCCGCGCACC ACTCCGCA GCC chr3R:6973380-6973500 53 2.93e-04 AAGGATATTC ATTCCGGG TTCATGTCTC chr2L:18312988-18313108 48 3.26e-04 tccgaggctc agtccgga gccggagtct chr3R:13011676-13011796 27 3.73e-04 CCGTGTTCGT ATTCCGCC ATTTTGAAAG chr3L:9704520-9704640 110 3.73e-04 GAGAGCGAAA AATCCGGA TAC chr3L:8151985-8152105 68 3.73e-04 ccgCACAAAA AATCCGGA GCGGATTGGA chr2R:13403800-13403920 106 3.73e-04 TTGTATCCGG AATCCGGA TTATATT chr3R:17795350-17795470 62 3.89e-04 GGTCGGATAA TGTCCGGA CGGGAAGCTA chr3R:21204917-21205037 45 3.89e-04 AGCGCAGACG TGTCCGGA AAGCGAACGG chr3R:20774230-20774350 42 4.19e-04 CGTCGTCCCC TTTCCGCC AAGTGATTCC chr3L:18240679-18240799 81 4.37e-04 CACAGTCTGC ACTCCGcg gacggacagt chr3R:19624578-19624698 17 4.70e-04 AAGCTCGCTC TCTCCGCG CTCCGGTCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCTCCGGM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16095697-16095817 1.7e-05 74_[+2]_38 chr2R:7206627-7206747 1.7e-05 43_[+2]_69 chr2L:6273883-6274003 1.7e-05 16_[+2]_96 chr3L:11832925-11833045 1.7e-05 72_[+2]_40 chr3R:21583534-21583654 1.7e-05 65_[+2]_47 chr3R:30532432-30532552 3.4e-05 100_[+2]_12 chr2L:18936223-18936343 3.4e-05 41_[+2]_71 chr2L:5528058-5528178 3.4e-05 95_[+2]_17 chr3L:12571611-12571731 3.4e-05 73_[+2]_39 chr3L:315244-315364 3.4e-05 63_[+2]_49 chr2L:717669-717789 3.4e-05 75_[+2]_37 chrX:11679619-11679739 3.4e-05 90_[+2]_22 chr2L:18811033-18811153 3.4e-05 16_[+2]_96 chr2L:128597-128717 5.1e-05 30_[+2]_82 chr3L:815970-816090 5.1e-05 97_[+2]_15 chr3R:26718014-26718134 5.1e-05 64_[+2]_48 chr3R:29723435-29723555 6.6e-05 77_[+2]_35 chr3R:8658841-8658961 6.6e-05 18_[+2]_94 chr3R:24229917-24230037 8.2e-05 63_[+2]_49 chr2R:18194049-18194169 8.2e-05 87_[+2]_25 chr2L:1147748-1147868 8.2e-05 49_[+2]_63 chr3R:30005484-30005604 9.7e-05 68_[+2]_44 chr2L:18119898-18120018 9.7e-05 110_[+2]_2 chr3L:12040598-12040718 0.00011 52_[+2]_60 chrX:476495-476615 0.00011 62_[+2]_50 chrX:18777071-18777191 0.00011 39_[+2]_73 chr3R:25094704-25094824 0.00015 10_[+2]_102 chr3R:16969529-16969649 0.00015 80_[+2]_32 chr3L:282318-282438 0.00015 12_[+2]_100 chr2R:24162353-24162473 0.00015 28_[+2]_84 chr2L:15406033-15406153 0.00015 34_[+2]_78 chr2R:14290220-14290340 0.00015 15_[+2]_97 chr3R:14739838-14739958 0.00015 46_[+2]_66 chr2L:7810641-7810761 0.00016 43_[+2]_69 chr2R:23843227-23843347 0.00016 [+2]_112 chr3L:11715395-11715515 0.00016 41_[+2]_71 chr3L:18243743-18243863 0.0002 33_[+2]_79 chr3L:5927712-5927832 0.0002 87_[+2]_25 chr3R:13524720-13524840 0.0002 76_[+2]_36 chr3R:31611492-31611612 0.0002 87_[+2]_25 chr2L:840613-840733 0.0002 26_[+2]_86 chr3L:17879052-17879172 0.0002 67_[+2]_45 chr2R:22257814-22257934 0.0002 [+2]_112 chr3L:21710680-21710800 0.00023 62_[+2]_50 chr3L:12530086-12530206 0.00023 9_[+2]_103 chr2L:19990454-19990574 0.00023 84_[+2]_28 chr3R:13304698-13304818 0.00023 25_[+2]_87 chr3L:7094796-7094916 0.00026 55_[+2]_57 chr3L:15246527-15246647 0.00028 9_[+2]_103 chr3L:1821221-1821341 0.00028 109_[+2]_3 chr3R:6973380-6973500 0.00029 52_[+2]_60 chr2L:18312988-18313108 0.00033 47_[+2]_65 chr3R:13011676-13011796 0.00037 26_[+2]_86 chr3L:9704520-9704640 0.00037 109_[+2]_3 chr3L:8151985-8152105 0.00037 67_[+2]_45 chr2R:13403800-13403920 0.00037 105_[+2]_7 chr3R:17795350-17795470 0.00039 61_[+2]_51 chr3R:21204917-21205037 0.00039 44_[+2]_68 chr3R:20774230-20774350 0.00042 41_[+2]_71 chr3L:18240679-18240799 0.00044 80_[+2]_32 chr3R:19624578-19624698 0.00047 16_[+2]_96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCTCCGGM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WCTCCGGM width=8 seqs=61 chr2R:16095697-16095817 ( 75) ACTCCGGC 1 chr2R:7206627-7206747 ( 44) ACTCCGGC 1 chr2L:6273883-6274003 ( 17) ACTCCGGC 1 chr3L:11832925-11833045 ( 73) ACTCCGGC 1 chr3R:21583534-21583654 ( 66) ACTCCGGC 1 chr3R:30532432-30532552 ( 101) TCTCCGGC 1 chr2L:18936223-18936343 ( 42) TCTCCGGC 1 chr2L:5528058-5528178 ( 96) TCTCCGGC 1 chr3L:12571611-12571731 ( 74) TCTCCGGC 1 chr3L:315244-315364 ( 64) TCTCCGGC 1 chr2L:717669-717789 ( 76) TCTCCGGC 1 chrX:11679619-11679739 ( 91) TCTCCGGC 1 chr2L:18811033-18811153 ( 17) TCTCCGGC 1 chr2L:128597-128717 ( 31) ACTCCGGA 1 chr3L:815970-816090 ( 98) ACTCCGGA 1 chr3R:26718014-26718134 ( 65) ACTCCGGA 1 chr3R:29723435-29723555 ( 78) TCTCCGGA 1 chr3R:8658841-8658961 ( 19) TCTCCGGA 1 chr3R:24229917-24230037 ( 64) ATTCCGGC 1 chr2R:18194049-18194169 ( 88) ATTCCGGC 1 chr2L:1147748-1147868 ( 50) ATTCCGGC 1 chr3R:30005484-30005604 ( 69) TTTCCGGC 1 chr2L:18119898-18120018 ( 111) TTTCCGGC 1 chr3L:12040598-12040718 ( 53) ACTCCGGG 1 chrX:476495-476615 ( 63) ACTCCGGG 1 chrX:18777071-18777191 ( 40) ACTCCGGG 1 chr3R:25094704-25094824 ( 11) TCTCCGGG 1 chr3R:16969529-16969649 ( 81) ACTCCGCC 1 chr3L:282318-282438 ( 13) ACTCCGCC 1 chr2R:24162353-24162473 ( 29) TCTCCGGG 1 chr2L:15406033-15406153 ( 35) TCTCCGGG 1 chr2R:14290220-14290340 ( 16) TCTCCGGG 1 chr3R:14739838-14739958 ( 47) ACTCCGCC 1 chr2L:7810641-7810761 ( 44) ATTCCGGA 1 chr2R:23843227-23843347 ( 1) ATTCCGGA 1 chr3L:11715395-11715515 ( 42) ATTCCGGA 1 chr3L:18243743-18243863 ( 34) TCTCCGCC 1 chr3L:5927712-5927832 ( 88) AGTCCGGC 1 chr3R:13524720-13524840 ( 77) AGTCCGGC 1 chr3R:31611492-31611612 ( 88) TCTCCGCC 1 chr2L:840613-840733 ( 27) TCTCCGCC 1 chr3L:17879052-17879172 ( 68) AGTCCGGC 1 chr2R:22257814-22257934 ( 1) AGTCCGGC 1 chr3L:21710680-21710800 ( 63) AATCCGGC 1 chr3L:12530086-12530206 ( 10) TTTCCGGA 1 chr2L:19990454-19990574 ( 85) AATCCGGC 1 chr3R:13304698-13304818 ( 26) TTTCCGGA 1 chr3L:7094796-7094916 ( 56) TATCCGGC 1 chr3L:15246527-15246647 ( 10) ACTCCGCA 1 chr3L:1821221-1821341 ( 110) ACTCCGCA 1 chr3R:6973380-6973500 ( 53) ATTCCGGG 1 chr2L:18312988-18313108 ( 48) AGTCCGGA 1 chr3R:13011676-13011796 ( 27) ATTCCGCC 1 chr3L:9704520-9704640 ( 110) AATCCGGA 1 chr3L:8151985-8152105 ( 68) AATCCGGA 1 chr2R:13403800-13403920 ( 106) AATCCGGA 1 chr3R:17795350-17795470 ( 62) TGTCCGGA 1 chr3R:21204917-21205037 ( 45) TGTCCGGA 1 chr3R:20774230-20774350 ( 42) TTTCCGCC 1 chr3L:18240679-18240799 ( 81) ACTCCGCG 1 chr3R:19624578-19624698 ( 17) TCTCCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCTCCGGM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5678 E= 8.4e-002 120 -1257 -1257 86 -134 115 -115 -14 -1257 -1257 -1257 209 -1257 195 -1257 -1257 -1257 195 -1257 -1257 -1257 -1257 197 -1257 -1257 -40 165 -1257 24 106 -64 -1257 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCTCCGGM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 8.4e-002 0.573770 0.000000 0.000000 0.426230 0.098361 0.573770 0.114754 0.213115 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.196721 0.803279 0.000000 0.295082 0.540984 0.163934 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WCTCCGGM MEME-2 regular expression -------------------------------------------------------------------------------- [AT][CT]TCCGG[CA] -------------------------------------------------------------------------------- Time 13.74 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTGGCCA MEME-3 width = 8 sites = 7 llr = 78 E-value = 7.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTGGCCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C :::::aa: probability G :::aa::: matrix T aaa::::: bits 2.1 *** * 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.0 ******** (16.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTGGCCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:21710680-21710800 13 1.44e-05 CGAATATTTC TTTGGCCA AGACGCTCCG chr2L:1886963-1887083 90 1.44e-05 TTTATTGCCT TTTGGCCA GTCTTCTGCG chr3R:25094704-25094824 106 1.44e-05 CGAGACCTGT TTTGGCCA ACATTGC chr2L:4905703-4905823 103 1.44e-05 GCCCCATTGT TTTGGCCA AGACATCATG chr3R:31611492-31611612 3 1.44e-05 TC TTTGGCCA GTGATTCTAC chr3L:5551282-5551402 87 1.44e-05 CGTTAATTTA TTTGGCCA AGCGCCGGAG chr2R:22257814-22257934 26 1.44e-05 GTCAACCGGT TTTGGCCA TCCATCTGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:21710680-21710800 1.4e-05 12_[+3]_100 chr2L:1886963-1887083 1.4e-05 89_[+3]_23 chr3R:25094704-25094824 1.4e-05 105_[+3]_7 chr2L:4905703-4905823 1.4e-05 102_[+3]_10 chr3R:31611492-31611612 1.4e-05 2_[+3]_110 chr3L:5551282-5551402 1.4e-05 86_[+3]_26 chr2R:22257814-22257934 1.4e-05 25_[+3]_87 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTGGCCA width=8 seqs=7 chr3L:21710680-21710800 ( 13) TTTGGCCA 1 chr2L:1886963-1887083 ( 90) TTTGGCCA 1 chr3R:25094704-25094824 ( 106) TTTGGCCA 1 chr2L:4905703-4905823 ( 103) TTTGGCCA 1 chr3R:31611492-31611612 ( 3) TTTGGCCA 1 chr3L:5551282-5551402 ( 87) TTTGGCCA 1 chr2R:22257814-22257934 ( 26) TTTGGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 7.8e+004 -945 -945 -945 208 -945 -945 -945 208 -945 -945 -945 208 -945 -945 197 -945 -945 -945 197 -945 -945 195 -945 -945 -945 195 -945 -945 200 -945 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 7.8e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGGCCA MEME-3 regular expression -------------------------------------------------------------------------------- TTTGGCCA -------------------------------------------------------------------------------- Time 19.85 secs. ******************************************************************************** ******************************************************************************** MOTIF AATATTTT MEME-4 width = 8 sites = 2 llr = 23 E-value = 1.9e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATATTTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A aa:a:::: pos.-specific C :::::::: probability G :::::::: matrix T ::a:aaaa bits 2.1 ******** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.0 ******** (16.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AATATTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATATTTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:9763573-9763693 42 1.14e-05 AAAGGCGGAC AATATTTT TAGAGCTCGC chr3L:17879052-17879172 25 1.14e-05 GCAGCCTCAA AATATTTT CAGTGGTTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATATTTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9763573-9763693 1.1e-05 41_[+4]_71 chr3L:17879052-17879172 1.1e-05 24_[+4]_88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATATTTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATATTTT width=8 seqs=2 chr3L:9763573-9763693 ( 42) AATATTTT 1 chr3L:17879052-17879172 ( 25) AATATTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATATTTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 1.9e+005 200 -765 -765 -765 200 -765 -765 -765 -765 -765 -765 208 200 -765 -765 -765 -765 -765 -765 208 -765 -765 -765 208 -765 -765 -765 208 -765 -765 -765 208 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATATTTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.9e+005 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATATTTT MEME-4 regular expression -------------------------------------------------------------------------------- AATATTTT -------------------------------------------------------------------------------- Time 25.96 secs. ******************************************************************************** ******************************************************************************** MOTIF GTATTTTT MEME-5 width = 8 sites = 2 llr = 23 E-value = 1.5e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTATTTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C :::::::: probability G a::::::: matrix T :a:aaaaa bits 2.1 ******* 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.0 ******** (16.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTATTTTT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTATTTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:8143152-8143272 97 1.11e-05 CACCTGCATG GTATTTTT AACCCATCCT chrX:5876777-5876897 3 1.11e-05 GC GTATTTTT GTTCACTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTATTTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:8143152-8143272 1.1e-05 96_[+5]_16 chrX:5876777-5876897 1.1e-05 2_[+5]_110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTATTTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTATTTTT width=8 seqs=2 chr2R:8143152-8143272 ( 97) GTATTTTT 1 chrX:5876777-5876897 ( 3) GTATTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTATTTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 1.5e+005 -765 -765 196 -765 -765 -765 -765 208 200 -765 -765 -765 -765 -765 -765 208 -765 -765 -765 208 -765 -765 -765 208 -765 -765 -765 208 -765 -765 -765 208 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTATTTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.5e+005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTATTTTT MEME-5 regular expression -------------------------------------------------------------------------------- GTATTTTT -------------------------------------------------------------------------------- Time 32.06 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:6343523-6343643 3.21e-01 120 chr2L:18811033-18811153 3.13e-01 16_[+2(3.38e-05)]_96 chr2R:20006935-20007055 9.61e-01 120 chr3L:1821221-1821341 6.60e-01 120 chr2R:7972474-7972594 1.26e-03 99_[+1(3.06e-05)]_13 chr2R:7493287-7493407 2.52e-01 120 chr3R:5385676-5385796 9.46e-01 120 chr3L:15762552-15762672 9.92e-01 120 chr2L:1147748-1147868 7.65e-02 49_[+2(8.23e-05)]_63 chr2L:2151663-2151783 2.03e-01 120 chr3L:11715395-11715515 4.43e-03 120 chr2R:10871304-10871424 1.16e-01 120 chr3L:177964-178084 3.23e-01 120 chr4:380592-380712 5.52e-01 120 chr3L:736709-736829 8.13e-01 120 chr2R:13403800-13403920 3.03e-01 120 chr3L:3162106-3162226 4.09e-02 120 chr3L:7094796-7094916 2.35e-02 120 chr3L:8151985-8152105 7.28e-01 120 chr2R:21076807-21076927 7.27e-01 120 chr2R:22099398-22099518 1.00e+00 120 chr3R:26718014-26718134 1.69e-01 64_[+2(5.06e-05)]_48 chr2R:24972965-24973085 7.52e-01 120 chr3L:15958717-15958837 2.18e-01 120 chr3L:815970-816090 5.23e-02 83_[+2(5.06e-05)]_6_[+2(5.06e-05)]_\ 15 chr3L:9396775-9396895 7.85e-01 120 chr2L:7189890-7190010 6.66e-01 120 chr3R:23026699-23026819 8.98e-01 120 chr2R:24928246-24928366 9.56e-01 120 chrX:5724259-5724379 9.96e-01 120 chr3R:8658841-8658961 1.91e-01 18_[+2(6.65e-05)]_94 chr2R:21168184-21168304 4.54e-01 120 chr3R:27087661-27087781 8.76e-01 120 chr2R:7492362-7492482 9.02e-01 120 chr2L:128597-128717 3.91e-01 30_[+2(5.06e-05)]_82 chr3R:20774230-20774350 4.47e-01 120 chr2R:7260867-7260987 7.58e-01 120 chr3R:26227076-26227196 1.79e-01 120 chrX:18777071-18777191 6.88e-02 120 chrX:11679619-11679739 7.30e-04 90_[+2(3.38e-05)]_22 chr2R:9577429-9577549 3.33e-01 120 chr3R:13767343-13767463 6.80e-01 120 chr2R:22257814-22257934 1.09e-04 25_[+3(1.44e-05)]_87 chrX:21123691-21123811 6.51e-05 10_[+1(9.62e-06)]_102 chr2R:8131973-8132093 8.98e-01 120 chr3R:7174911-7175031 8.45e-01 120 chr3R:7967001-7967121 8.87e-01 120 chr2R:21037089-21037209 8.54e-02 1_[+1(4.11e-05)]_111 chr3R:14739838-14739958 3.62e-01 120 chr2R:6648686-6648806 9.97e-01 120 chr2L:717669-717789 2.72e-02 75_[+2(3.38e-05)]_37 chr3L:20310419-20310539 8.29e-01 120 chr3L:21892923-21893043 1.00e+00 120 chr3R:5213476-5213596 9.97e-01 120 chr2L:20106760-20106880 8.31e-01 120 chr3R:30820912-30821032 9.88e-01 120 chr3R:29616191-29616311 8.14e-01 120 chr3R:5028508-5028628 3.96e-01 120 chr3R:25205696-25205816 8.58e-01 120 chr3R:21583534-21583654 2.41e-01 65_[+2(1.74e-05)]_47 chr2R:24163022-24163142 8.43e-01 120 chr2R:14290220-14290340 1.45e-05 100_[+1(9.62e-06)]_12 chr2L:13827691-13827811 4.12e-03 88_[+5(1.11e-05)]_24 chrX:16783967-16784087 5.66e-05 29_[+1(9.62e-06)]_83 chr2R:15322750-15322870 7.50e-01 120 chrX:18486801-18486921 9.77e-01 120 chrX:5876777-5876897 1.23e-03 2_[+5(1.11e-05)]_110 chr3L:1269139-1269259 8.18e-01 120 chr2L:15406033-15406153 5.51e-05 97_[+1(9.62e-06)]_15 chr3R:13939819-13939939 6.33e-02 120 chr3L:16651274-16651394 6.91e-01 120 chr3R:15807273-15807393 8.19e-01 120 chrX:6660057-6660177 1.00e+00 120 chr2R:14965629-14965749 9.12e-03 120 chr2L:5805371-5805491 9.05e-01 120 chr3L:11832925-11833045 1.82e-03 72_[+2(1.74e-05)]_40 chr2R:21613024-21613144 3.84e-01 120 chr2R:7146900-7147020 9.93e-01 120 chrX:11891895-11892015 1.79e-01 120 chr2R:8655949-8656069 9.69e-01 120 chrX:15465479-15465599 8.93e-01 120 chrX:13949058-13949178 1.38e-01 120 chr2R:24162353-24162473 6.00e-01 120 chr3R:31504854-31504974 9.01e-01 120 chr2R:8091672-8091792 8.95e-01 120 chr3R:14820154-14820274 1.00e+00 120 chr2L:13804812-13804932 1.38e-03 38_[+1(3.06e-05)]_17_[+1(4.11e-05)]_\ 49 chrX:476495-476615 5.20e-03 24_[+1(6.18e-05)]_88 chr3L:5551282-5551402 1.21e-03 86_[+3(1.44e-05)]_26 chr3L:315244-315364 3.05e-03 63_[+2(3.38e-05)]_20_[+2(8.23e-05)]_\ 21 chr3R:13304698-13304818 5.65e-01 120 chrX:11123629-11123749 3.22e-03 93_[+1(3.06e-05)]_19 chr3L:5844374-5844494 1.69e-01 120 chr3L:8523457-8523577 1.11e-01 120 chr2R:18194049-18194169 3.25e-01 87_[+2(8.23e-05)]_25 chr2L:19990454-19990574 5.93e-03 120 chr3R:14276307-14276427 9.42e-01 120 chr2R:5993949-5994069 6.14e-01 120 chr2R:7736018-7736138 5.25e-02 120 chrX:6683719-6683839 7.46e-02 120 chr3L:17379390-17379510 1.46e-02 34_[+1(3.06e-05)]_78 chr2L:18312988-18313108 2.26e-01 120 chr3R:20576955-20577075 2.69e-01 120 chr2L:5805580-5805700 9.93e-01 120 chr3L:9853311-9853431 8.16e-01 120 chr2R:15485241-15485361 6.28e-01 120 chr2L:6919654-6919774 5.82e-01 120 chr2L:109147-109267 6.38e-01 120 chr2R:18692413-18692533 7.39e-01 120 chr2R:14770832-14770952 1.00e+00 120 chr2R:19963779-19963899 6.91e-01 120 chr3R:24229917-24230037 2.36e-02 63_[+2(8.23e-05)]_49 chr2L:14531641-14531761 3.69e-01 120 chr3L:10943119-10943239 9.87e-01 120 chr3L:15188581-15188701 9.72e-01 120 chr2L:16590485-16590605 9.99e-01 120 chr3L:19707913-19708033 2.80e-01 120 chr3L:16941463-16941583 7.80e-03 120 chr3L:9704520-9704640 4.95e-01 120 chr3L:282318-282438 5.88e-01 120 chr2R:15847290-15847410 9.99e-01 120 chr2R:15680067-15680187 1.46e-01 120 chr3L:17879052-17879172 4.20e-03 24_[+4(1.14e-05)]_88 chr3R:4307935-4308055 2.87e-03 63_[+1(9.62e-06)]_49 chr3L:22444027-22444147 2.20e-01 120 chr2L:16353179-16353299 1.69e-01 120 chr2L:840613-840733 1.17e-01 120 chr3R:13011676-13011796 1.51e-01 120 chr3L:12028691-12028811 8.82e-01 120 chr3R:28861698-28861818 7.37e-01 120 chr2R:8318261-8318381 8.49e-01 120 chr2L:564064-564184 9.65e-01 120 chr2R:17761248-17761368 9.17e-01 120 chr2R:6789025-6789145 9.08e-01 120 chr3R:31611492-31611612 1.34e-05 2_[+3(1.44e-05)]_13_[+1(3.06e-05)]_\ 89 chr3L:5542501-5542621 6.28e-01 120 chr2R:13464237-13464357 9.36e-01 120 chr3L:1884846-1884966 9.55e-01 120 chrX:19485190-19485310 2.04e-03 18_[+1(4.11e-05)]_44_[+5(7.65e-05)]_\ 2_[+1(3.06e-05)]_32 chrX:1846491-1846611 6.08e-01 120 chr2R:6562755-6562875 8.92e-01 120 chr2R:23843227-23843347 6.59e-03 120 chr2L:13203240-13203360 1.06e-04 8_[+4(1.14e-05)]_89_[+1(5.13e-05)]_\ 7 chr3L:4349442-4349562 5.61e-01 120 chr3R:29723435-29723555 1.26e-01 77_[+2(6.65e-05)]_35 chr2L:7573637-7573757 9.79e-01 120 chr3L:9399962-9400082 7.18e-01 120 chr3R:13526145-13526265 9.99e-01 120 chr2R:20579343-20579463 8.41e-01 120 chrX:13154972-13155092 1.53e-02 120 chr3L:20497256-20497376 3.46e-02 120 chr3L:12530086-12530206 2.61e-01 120 chrX:17578547-17578667 5.88e-01 120 chr3L:12571611-12571731 1.70e-01 73_[+2(3.38e-05)]_39 chr3R:21204917-21205037 3.38e-02 120 chr2L:20965163-20965283 8.18e-04 120 chr3L:1756273-1756393 9.43e-01 120 chrX:8176404-8176524 1.12e-02 40_[+1(4.11e-05)]_72 chr2L:7157592-7157712 4.76e-01 120 chr3R:9625401-9625521 8.33e-02 120 chr2L:5236544-5236664 2.16e-04 48_[+1(5.13e-05)]_64 chr3R:19624578-19624698 1.37e-01 120 chr3R:10125722-10125842 2.02e-01 120 chr2L:3557624-3557744 5.49e-04 24_[+1(5.13e-05)]_88 chr2L:1183960-1184080 2.26e-02 120 chr2L:5050000-5050120 9.18e-03 120 chr2R:18631806-18631926 6.56e-02 120 chr3L:21254523-21254643 9.22e-01 120 chrX:2455792-2455912 1.00e+00 120 chr2L:16255670-16255790 4.22e-02 29_[+1(6.18e-05)]_1_[+1(4.11e-05)]_\ 74 chr3R:16969529-16969649 1.32e-02 120 chr2L:6273883-6274003 1.19e-01 16_[+2(1.74e-05)]_96 chr3R:31743381-31743501 1.17e-01 120 chr3L:11366668-11366788 6.49e-01 120 chr3L:15246527-15246647 1.73e-01 120 chr3L:4227420-4227540 1.43e-01 120 chr2R:12942656-12942776 9.88e-01 120 chr3R:11859292-11859412 1.00e+00 120 chr2R:24081619-24081739 1.50e-01 120 chr2L:1887865-1887985 6.23e-02 108_[+1(8.46e-05)]_4 chr2L:2009763-2009883 4.52e-01 120 chrX:1927568-1927688 3.64e-01 120 chrX:19522802-19522922 4.17e-01 120 chr3R:16254005-16254125 8.05e-01 120 chr2L:2767791-2767911 5.63e-02 120 chr3R:21619881-21620001 7.88e-01 120 chr2L:6791976-6792096 9.12e-01 120 chrX:18483757-18483877 9.98e-01 120 chr3L:11365675-11365795 9.97e-01 120 chr3L:11609484-11609604 6.74e-02 120 chr3R:21646355-21646475 9.01e-01 120 chr2R:8143152-8143272 6.22e-03 96_[+5(1.11e-05)]_16 chr3R:6973380-6973500 6.42e-01 120 chr2L:5528058-5528178 1.41e-01 95_[+2(3.38e-05)]_17 chr3R:11763613-11763733 6.75e-01 120 chr2R:21847844-21847964 1.51e-01 120 chr2R:20230920-20231040 9.92e-03 21_[+5(7.65e-05)]_91 chr2R:23706966-23707086 3.11e-02 120 chr2R:7463043-7463163 1.11e-02 34_[+1(3.06e-05)]_78 chr3R:27919233-27919353 3.89e-01 120 chr2L:7065850-7065970 4.83e-03 74_[+5(7.65e-05)]_6_[+1(6.18e-05)]_\ 24 chr2L:4905703-4905823 7.66e-03 102_[+3(1.44e-05)]_10 chrX:1614531-1614651 9.89e-01 120 chr2L:9330643-9330763 1.05e-01 120 chr2R:23798362-23798482 9.73e-01 120 chr3R:25094704-25094824 5.03e-03 105_[+3(1.44e-05)]_7 chr2L:560318-560438 8.42e-02 120 chr2L:7810641-7810761 1.69e-02 120 chr3R:17795350-17795470 2.10e-01 120 chr2L:8031697-8031817 2.98e-01 120 chrX:16651198-16651318 6.14e-01 120 chr2L:18119898-18120018 2.24e-01 110_[+2(9.73e-05)]_2 chr2R:13506311-13506431 2.19e-02 120 chr2L:7466390-7466510 5.96e-02 120 chr2L:22756365-22756485 7.72e-01 120 chr3R:18987678-18987798 7.80e-01 120 chr3L:4692781-4692901 1.65e-01 120 chr3L:16196756-16196876 8.58e-03 78_[+4(1.14e-05)]_34 chr3R:13710773-13710893 4.96e-05 27_[+1(9.62e-06)]_85 chr3R:13524720-13524840 6.42e-01 120 chr3L:9401153-9401273 5.89e-01 120 chr2R:17639059-17639179 3.88e-01 120 chr2R:7206627-7206747 1.26e-02 43_[+2(1.74e-05)]_69 chr2R:23727097-23727217 9.93e-01 120 chr3R:9057947-9058067 9.97e-01 120 chr3L:5927712-5927832 7.40e-04 49_[+1(4.11e-05)]_63 chr3L:18240679-18240799 7.87e-01 120 chr3L:18243743-18243863 4.22e-01 120 chr2L:18936223-18936343 1.40e-01 41_[+2(3.38e-05)]_71 chr3R:28914240-28914360 2.71e-03 33_[+1(3.06e-05)]_79 chr3L:9763573-9763693 8.31e-04 41_[+4(1.14e-05)]_71 chr2R:8132181-8132301 9.45e-01 120 chr2L:1886963-1887083 1.61e-04 89_[+3(1.44e-05)]_10_[+1(3.06e-05)]_\ 5 chr2L:6966486-6966606 2.29e-03 120 chr3L:10968785-10968905 1.20e-01 120 chr2R:17439589-17439709 9.52e-01 120 chrX:15835456-15835576 5.75e-01 120 chr2R:16095697-16095817 3.89e-03 74_[+2(1.74e-05)]_38 chrX:10585307-10585427 1.81e-01 120 chr3L:21710680-21710800 2.00e-04 12_[+3(1.44e-05)]_100 chr3L:12040598-12040718 1.00e-02 120 chr2R:18271170-18271290 9.09e-01 120 chr3R:22539853-22539973 9.82e-01 120 chr3L:21893739-21893859 9.48e-01 120 chr3R:30532432-30532552 3.19e-01 100_[+2(3.38e-05)]_12 chr3R:11865275-11865395 7.01e-04 25_[+1(4.11e-05)]_4_[+1(9.62e-06)]_\ 75 chr3R:30005484-30005604 8.26e-05 31_[+1(3.06e-05)]_[+1(3.06e-05)]_2_\ [+1(9.62e-06)]_11_[+2(9.73e-05)]_44 chr2L:13004508-13004628 6.21e-01 120 chr3L:14978594-14978714 5.18e-01 120 chr2L:5096265-5096385 4.68e-02 24_[+5(7.65e-05)]_88 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************