******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1620.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:8479341-8479461 1.0000 120 chrX:13972538-13972658 1.0000 120 chr2R:19461629-19461749 1.0000 120 chrX:11373484-11373604 1.0000 120 chrX:19663969-19664089 1.0000 120 chrX:11137047-11137167 1.0000 120 chr2L:13382546-13382666 1.0000 120 chrX:9395027-9395147 1.0000 120 chr3L:14789805-14789925 1.0000 120 chrX:3667359-3667479 1.0000 120 chr3L:8748983-8749103 1.0000 120 chr3R:17214894-17215014 1.0000 120 chr3R:5270924-5271044 1.0000 120 chrX:11426062-11426182 1.0000 120 chr3L:7338931-7339051 1.0000 120 chrX:8473520-8473640 1.0000 120 chr3R:30056106-30056226 1.0000 120 chrX:17183604-17183724 1.0000 120 chr3R:23763161-23763281 1.0000 120 chrX:11350498-11350618 1.0000 120 chrX:14954002-14954122 1.0000 120 chr3R:11223368-11223488 1.0000 120 chr3R:14070227-14070347 1.0000 120 chr2L:16040261-16040381 1.0000 120 chr3R:4947884-4948004 1.0000 120 chrX:1900199-1900319 1.0000 120 chrX:11149359-11149479 1.0000 120 chr2L:6561630-6561750 1.0000 120 chr3R:7076736-7076856 1.0000 120 chrX:8152810-8152930 1.0000 120 chr3R:10311537-10311657 1.0000 120 chr2R:7673137-7673257 1.0000 120 chr2L:8438193-8438313 1.0000 120 chrX:11349903-11350023 1.0000 120 chrX:15594626-15594746 1.0000 120 chr3R:21296792-21296912 1.0000 120 chrX:15308601-15308721 1.0000 120 chr3R:7536266-7536386 1.0000 120 chrX:10474652-10474772 1.0000 120 chr2R:10437604-10437724 1.0000 120 chrX:15859974-15860094 1.0000 120 chrX:8900308-8900428 1.0000 120 chr3R:21195771-21195891 1.0000 120 chr2R:21720371-21720491 1.0000 120 chrX:16893196-16893316 1.0000 120 chrX:4117525-4117645 1.0000 120 chr3R:9010799-9010919 1.0000 120 chr3R:11759637-11759757 1.0000 120 chr3L:14204585-14204705 1.0000 120 chrX:17820361-17820481 1.0000 120 chrX:8906906-8907026 1.0000 120 chr3R:19158098-19158218 1.0000 120 chrX:16587175-16587295 1.0000 120 chr2L:16318429-16318549 1.0000 120 chrX:21035332-21035452 1.0000 120 chrX:20169984-20170104 1.0000 120 chr2L:20104718-20104838 1.0000 120 chr2R:12198836-12198956 1.0000 120 chrX:20159964-20160084 1.0000 120 chrX:1868807-1868927 1.0000 120 chr3L:834009-834129 1.0000 120 chrX:19494391-19494511 1.0000 120 chrX:2107886-2108006 1.0000 120 chr3R:10679299-10679419 1.0000 120 chrX:1304878-1304998 1.0000 120 chr3L:11534634-11534754 1.0000 120 chr3R:22726709-22726829 1.0000 120 chr3R:22816477-22816597 1.0000 120 chr2R:20640718-20640838 1.0000 120 chr2L:1118951-1119071 1.0000 120 chrX:21519339-21519459 1.0000 120 chr3L:16804847-16804967 1.0000 120 chr3L:10661394-10661514 1.0000 120 chr2L:20106733-20106853 1.0000 120 chr2R:10252411-10252531 1.0000 120 chr2L:6080473-6080593 1.0000 120 chr2R:16139036-16139156 1.0000 120 chr3L:17006490-17006610 1.0000 120 chr3R:18438335-18438455 1.0000 120 chr2R:7653916-7654036 1.0000 120 chr3R:10412874-10412994 1.0000 120 chr2L:3372531-3372651 1.0000 120 chr3L:607062-607182 1.0000 120 chrX:10385810-10385930 1.0000 120 chrX:17842046-17842166 1.0000 120 chrX:16803278-16803398 1.0000 120 chrX:10473693-10473813 1.0000 120 chr4:1029360-1029480 1.0000 120 chrX:17078600-17078720 1.0000 120 chrX:14805878-14805998 1.0000 120 chrX:9355582-9355702 1.0000 120 chr3L:4193869-4193989 1.0000 120 chrX:19495386-19495506 1.0000 120 chrX:6689000-6689120 1.0000 120 chrX:8884234-8884354 1.0000 120 chr2L:18459790-18459910 1.0000 120 chr2R:6871339-6871459 1.0000 120 chr3R:13819104-13819224 1.0000 120 chr3R:15363775-15363895 1.0000 120 chr3L:17401085-17401205 1.0000 120 chr2L:21142288-21142408 1.0000 120 chr3L:5807521-5807641 1.0000 120 chrX:3448403-3448523 1.0000 120 chr3R:8357191-8357311 1.0000 120 chrX:21369178-21369298 1.0000 120 chrX:9047097-9047217 1.0000 120 chr2R:16344369-16344489 1.0000 120 chrX:7102268-7102388 1.0000 120 chr3R:20558215-20558335 1.0000 120 chrX:3671523-3671643 1.0000 120 chrX:5917092-5917212 1.0000 120 chr3R:22518445-22518565 1.0000 120 chrX:8260025-8260145 1.0000 120 chrX:9605920-9606040 1.0000 120 chrX:16791253-16791373 1.0000 120 chrX:15835430-15835550 1.0000 120 chr2R:16230601-16230721 1.0000 120 chrX:801627-801747 1.0000 120 chrX:13296954-13297074 1.0000 120 chrX:10210620-10210740 1.0000 120 chr2R:22066808-22066928 1.0000 120 chr3R:15367622-15367742 1.0000 120 chr3R:16482456-16482576 1.0000 120 chr3R:29835442-29835562 1.0000 120 chr2R:7458781-7458901 1.0000 120 chr2R:9428106-9428226 1.0000 120 chr2L:8198880-8199000 1.0000 120 chr2R:13239398-13239518 1.0000 120 chrX:15697338-15697458 1.0000 120 chrX:19762319-19762439 1.0000 120 chrX:17830809-17830929 1.0000 120 chrX:13285579-13285699 1.0000 120 chr2L:22131267-22131387 1.0000 120 chrX:18320252-18320372 1.0000 120 chrX:16598536-16598656 1.0000 120 chr3L:18837716-18837836 1.0000 120 chr2R:24780806-24780926 1.0000 120 chrX:11806382-11806502 1.0000 120 chr2R:10437363-10437483 1.0000 120 chr3R:14308801-14308921 1.0000 120 chr3R:19067966-19068086 1.0000 120 chrX:13568293-13568413 1.0000 120 chrX:16792049-16792169 1.0000 120 chr2L:1177601-1177721 1.0000 120 chrX:10847098-10847218 1.0000 120 chrX:19605173-19605293 1.0000 120 chr2R:16180115-16180235 1.0000 120 chr2L:4965548-4965668 1.0000 120 chr2L:5325010-5325130 1.0000 120 chrX:11340927-11341047 1.0000 120 chr2L:5278502-5278622 1.0000 120 chr3R:10049067-10049187 1.0000 120 chr2L:18151893-18152013 1.0000 120 chrX:8412718-8412838 1.0000 120 chrX:6641768-6641888 1.0000 120 chr2R:16322129-16322249 1.0000 120 chr3L:17433037-17433157 1.0000 120 chr3R:16154347-16154467 1.0000 120 chrX:11905381-11905501 1.0000 120 chrX:1033211-1033331 1.0000 120 chr2R:7013009-7013129 1.0000 120 chr3L:3159585-3159705 1.0000 120 chr2L:3059292-3059412 1.0000 120 chr2L:16881200-16881320 1.0000 120 chr3L:3814665-3814785 1.0000 120 chr4:696008-696128 1.0000 120 chr2R:19293138-19293258 1.0000 120 chr2L:435541-435661 1.0000 120 chrX:1773608-1773728 1.0000 120 chr2R:9251952-9252072 1.0000 120 chr3L:15563563-15563683 1.0000 120 chrX:11137249-11137369 1.0000 120 chrX:16695837-16695957 1.0000 120 chrX:476480-476600 1.0000 120 chr3L:8121706-8121826 1.0000 120 chrX:7702721-7702841 1.0000 120 chr2R:21312292-21312412 1.0000 120 chrX:15313981-15314101 1.0000 120 chr3R:20634730-20634850 1.0000 120 chrX:11136454-11136574 1.0000 120 chr3L:9059903-9060023 1.0000 120 chr2R:21649118-21649238 1.0000 120 chr3R:15320565-15320685 1.0000 120 chrX:13779924-13780044 1.0000 120 chr3L:3209032-3209152 1.0000 120 chrX:3173144-3173264 1.0000 120 chrX:11483378-11483498 1.0000 120 chr2R:10838731-10838851 1.0000 120 chr2R:6993977-6994097 1.0000 120 chrX:1477008-1477128 1.0000 120 chr3R:24753652-24753772 1.0000 120 chr3L:9729911-9730031 1.0000 120 chrX:6678178-6678298 1.0000 120 chr2L:5907008-5907128 1.0000 120 chrX:11124852-11124972 1.0000 120 chr2R:16291430-16291550 1.0000 120 chr2L:21166592-21166712 1.0000 120 chr3L:3143431-3143551 1.0000 120 chr2L:10277498-10277618 1.0000 120 chrX:13845896-13846016 1.0000 120 chr3R:18167686-18167806 1.0000 120 chr3R:8893160-8893280 1.0000 120 chr3R:5302089-5302209 1.0000 120 chr2R:24571669-24571789 1.0000 120 chr2R:11640076-11640196 1.0000 120 chrX:16073457-16073577 1.0000 120 chr3R:30802933-30803053 1.0000 120 chr2L:4458798-4458918 1.0000 120 chr2L:9890771-9890891 1.0000 120 chr4:314793-314913 1.0000 120 chrX:9106604-9106724 1.0000 120 chrX:19748720-19748840 1.0000 120 chr3L:5751714-5751834 1.0000 120 chr2L:18572187-18572307 1.0000 120 chr3R:23927612-23927732 1.0000 120 chr2L:18119759-18119879 1.0000 120 chr3L:10698220-10698340 1.0000 120 chrX:17860890-17861010 1.0000 120 chrX:18101193-18101313 1.0000 120 chr2L:6527113-6527233 1.0000 120 chr2R:4744305-4744425 1.0000 120 chr2R:14170407-14170527 1.0000 120 chr2R:9116515-9116635 1.0000 120 chrX:4918734-4918854 1.0000 120 chr2R:7489870-7489990 1.0000 120 chr3R:30151658-30151778 1.0000 120 chrX:8273814-8273934 1.0000 120 chrX:7691496-7691616 1.0000 120 chr2L:3478044-3478164 1.0000 120 chrX:17856848-17856968 1.0000 120 chr3L:14564585-14564705 1.0000 120 chr2L:8437312-8437432 1.0000 120 chr3L:11113779-11113899 1.0000 120 chr2L:10278807-10278927 1.0000 120 chrX:2073441-2073561 1.0000 120 chrX:7323747-7323867 1.0000 120 chr3R:28587192-28587312 1.0000 120 chr3L:18667250-18667370 1.0000 120 chr3L:8338968-8339088 1.0000 120 chr2L:12436317-12436437 1.0000 120 chr2R:6652906-6653026 1.0000 120 chr3L:19914885-19915005 1.0000 120 chr2R:16772649-16772769 1.0000 120 chr3R:25249260-25249380 1.0000 120 chrX:10472683-10472803 1.0000 120 chr2L:3058288-3058408 1.0000 120 chrX:19704168-19704288 1.0000 120 chr2R:8572695-8572815 1.0000 120 chr3R:5223355-5223475 1.0000 120 chrX:10786789-10786909 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG1620/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1620.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.293 C 0.203 G 0.208 T 0.296 Background letter frequencies (from file dataset with add-one prior applied): A 0.293 C 0.203 G 0.208 T 0.296 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CARCACTG MEME-1 width = 8 sites = 40 llr = 367 E-value = 1.2e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif CARCACTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a4:7::3 pos.-specific C a::a2a:: probability G ::6::::8 matrix T 1:::1:a: bits 2.3 * * 2.1 * * * 1.8 ** * ** 1.6 ** * ** Relative 1.4 ** * *** Entropy 1.2 **** *** (13.2 bits) 0.9 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGCACTG consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCACTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:8338968-8339088 45 9.20e-06 TATAGTTTAC CAGCACTG TTTAAAAATG chrX:13845896-13846016 106 9.20e-06 ACACATCCGA CAGCACTG GTTAAGT chr2R:16291430-16291550 86 9.20e-06 CTGCGTTAAC CAGCACTG TCACACATGT chr2L:5907008-5907128 40 9.20e-06 ATTCAAAATG CAGCACTG GCGTTTGGTC chrX:15697338-15697458 112 9.20e-06 GCCAGGCTGG CAGCACTG C chr2L:8198880-8199000 28 9.20e-06 AGCCGCTTGA CAGCACTG TTTAATTTAT chr2L:8438193-8438313 81 9.20e-06 GTGTTCTTTC CAGCACTG GAAACAGCTG chrX:11350498-11350618 52 9.20e-06 AGACATTCTG CAGCACTG GCCGACCGAC chrX:11137047-11137167 11 9.20e-06 CCGCGTTGCG CAGCACTG GACTGCAGCG chr2R:6652906-6653026 11 2.22e-05 CCGTGTTTAG CAACACTG GAAACGCCGT chr2L:8437312-8437432 84 2.22e-05 TGGCCTTGTC CAACACTG TTCAGCCAGC chrX:11483378-11483498 26 2.22e-05 TAGCATTAAC CAACACTG TACCAGCTGG chrX:11136454-11136574 85 2.22e-05 CGGCACTGTG CAACACTG ACACACACAT chr2R:22066808-22066928 33 2.22e-05 TTGTCAAACG CAACACTG AAATCCGACT chr3L:4193869-4193989 60 2.22e-05 GCGCATTTTA CAACACTG CCAAACAATG chr2R:7653916-7654036 72 2.22e-05 CATGCTTTCC CAACACTG ACTTTAACAC chr2R:21720371-21720491 82 2.22e-05 CGGCGTTAGC CAACACTG AAAAATACCA chrX:8152810-8152930 64 2.22e-05 AAGGTAAGCT CAACACTG CGGTTCGTTA chr3R:5270924-5271044 98 2.22e-05 GCAAACTACT CAACACTG TAATGGGCAA chr3R:18167686-18167806 63 2.85e-05 CGCACGCCTG CAGCCCTG GTAACTCTAT chr2L:5325010-5325130 53 2.85e-05 CGAGAGTTTG CAGCCCTG GTTTACGACA chrX:19762319-19762439 59 2.85e-05 CTCGTCGATG CAGCCCTG GTCAATTCGT chr3R:25249260-25249380 93 4.15e-05 TTTTTTGTTC CAGCACTA AGTTTGCACA chr3L:10698220-10698340 36 4.15e-05 GCACACTTTA CAGCACTA TCTCTCAAAT chr2R:9251952-9252072 19 4.15e-05 TGAGCCTTTC CAGCACTA GTAACATTAC chr2R:13239398-13239518 103 4.15e-05 TGTCGTTTTC CAGCACTA CATCAGGGAT chr3L:14789805-14789925 91 4.15e-05 GCGACATGTT CAGCACTA TTTCGCGCCG chrX:4918734-4918854 82 5.97e-05 AAACATCTGG CAGCTCTG CGCAACGGCA chrX:476480-476600 112 5.97e-05 GCACGGCTGG CAACCCTG G chr3R:14070227-14070347 39 5.97e-05 TTGACCAGTG CAGCTCTG CAAATAGGCT chr2R:9116515-9116635 98 7.80e-05 CGGCGCTTAA CAACACTA TCATCCGCCA chrX:11137249-11137369 18 7.80e-05 ATGTCTTGGC CAACACTA GGCAAAGTAA chr3R:15363775-15363895 68 7.80e-05 TGGTGATTTG CAACACTA CACGAAATGG chr2R:21312292-21312412 11 9.11e-05 TATTTTTACA CAACTCTG GAGTTGCCAT chrX:11806382-11806502 36 9.11e-05 CACACACGTG CAACTCTG GGGCCAAAAA chr4:1029360-1029480 52 9.11e-05 CAAAAATTGG CAACTCTG AATAATTATT chr3L:3159585-3159705 10 1.00e-04 TCTACTCGA CAGCCCTA CTTCGGTATT chrX:16598536-16598656 49 1.00e-04 ATTTATTTTC CAGCCCTA AAAATGTAAA chr3L:3209032-3209152 103 1.39e-04 AGAGTGTATG TAGCACTG TTCCCACTCG chr3R:10049067-10049187 96 1.39e-04 CATTATTGGT TAGCACTG GTTAGCCAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCACTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:8338968-8339088 9.2e-06 44_[+1]_68 chrX:13845896-13846016 9.2e-06 105_[+1]_7 chr2R:16291430-16291550 9.2e-06 85_[+1]_27 chr2L:5907008-5907128 9.2e-06 39_[+1]_73 chrX:15697338-15697458 9.2e-06 111_[+1]_1 chr2L:8198880-8199000 9.2e-06 27_[+1]_85 chr2L:8438193-8438313 9.2e-06 80_[+1]_32 chrX:11350498-11350618 9.2e-06 51_[+1]_61 chrX:11137047-11137167 9.2e-06 10_[+1]_102 chr2R:6652906-6653026 2.2e-05 10_[+1]_102 chr2L:8437312-8437432 2.2e-05 83_[+1]_29 chrX:11483378-11483498 2.2e-05 25_[+1]_87 chrX:11136454-11136574 2.2e-05 84_[+1]_28 chr2R:22066808-22066928 2.2e-05 32_[+1]_80 chr3L:4193869-4193989 2.2e-05 59_[+1]_53 chr2R:7653916-7654036 2.2e-05 71_[+1]_41 chr2R:21720371-21720491 2.2e-05 81_[+1]_31 chrX:8152810-8152930 2.2e-05 63_[+1]_49 chr3R:5270924-5271044 2.2e-05 97_[+1]_15 chr3R:18167686-18167806 2.9e-05 62_[+1]_50 chr2L:5325010-5325130 2.9e-05 52_[+1]_60 chrX:19762319-19762439 2.9e-05 58_[+1]_54 chr3R:25249260-25249380 4.1e-05 92_[+1]_20 chr3L:10698220-10698340 4.1e-05 35_[+1]_77 chr2R:9251952-9252072 4.1e-05 18_[+1]_94 chr2R:13239398-13239518 4.1e-05 102_[+1]_10 chr3L:14789805-14789925 4.1e-05 90_[+1]_22 chrX:4918734-4918854 6e-05 81_[+1]_31 chrX:476480-476600 6e-05 111_[+1]_1 chr3R:14070227-14070347 6e-05 38_[+1]_74 chr2R:9116515-9116635 7.8e-05 97_[+1]_15 chrX:11137249-11137369 7.8e-05 17_[+1]_95 chr3R:15363775-15363895 7.8e-05 67_[+1]_45 chr2R:21312292-21312412 9.1e-05 10_[+1]_102 chrX:11806382-11806502 9.1e-05 35_[+1]_77 chr4:1029360-1029480 9.1e-05 51_[+1]_61 chr3L:3159585-3159705 0.0001 9_[+1]_103 chrX:16598536-16598656 0.0001 48_[+1]_64 chr3L:3209032-3209152 0.00014 102_[+1]_10 chr3R:10049067-10049187 0.00014 95_[+1]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCACTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CARCACTG width=8 seqs=40 chr3L:8338968-8339088 ( 45) CAGCACTG 1 chrX:13845896-13846016 ( 106) CAGCACTG 1 chr2R:16291430-16291550 ( 86) CAGCACTG 1 chr2L:5907008-5907128 ( 40) CAGCACTG 1 chrX:15697338-15697458 ( 112) CAGCACTG 1 chr2L:8198880-8199000 ( 28) CAGCACTG 1 chr2L:8438193-8438313 ( 81) CAGCACTG 1 chrX:11350498-11350618 ( 52) CAGCACTG 1 chrX:11137047-11137167 ( 11) CAGCACTG 1 chr2R:6652906-6653026 ( 11) CAACACTG 1 chr2L:8437312-8437432 ( 84) CAACACTG 1 chrX:11483378-11483498 ( 26) CAACACTG 1 chrX:11136454-11136574 ( 85) CAACACTG 1 chr2R:22066808-22066928 ( 33) CAACACTG 1 chr3L:4193869-4193989 ( 60) CAACACTG 1 chr2R:7653916-7654036 ( 72) CAACACTG 1 chr2R:21720371-21720491 ( 82) CAACACTG 1 chrX:8152810-8152930 ( 64) CAACACTG 1 chr3R:5270924-5271044 ( 98) CAACACTG 1 chr3R:18167686-18167806 ( 63) CAGCCCTG 1 chr2L:5325010-5325130 ( 53) CAGCCCTG 1 chrX:19762319-19762439 ( 59) CAGCCCTG 1 chr3R:25249260-25249380 ( 93) CAGCACTA 1 chr3L:10698220-10698340 ( 36) CAGCACTA 1 chr2R:9251952-9252072 ( 19) CAGCACTA 1 chr2R:13239398-13239518 ( 103) CAGCACTA 1 chr3L:14789805-14789925 ( 91) CAGCACTA 1 chrX:4918734-4918854 ( 82) CAGCTCTG 1 chrX:476480-476600 ( 112) CAACCCTG 1 chr3R:14070227-14070347 ( 39) CAGCTCTG 1 chr2R:9116515-9116635 ( 98) CAACACTA 1 chrX:11137249-11137369 ( 18) CAACACTA 1 chr3R:15363775-15363895 ( 68) CAACACTA 1 chr2R:21312292-21312412 ( 11) CAACTCTG 1 chrX:11806382-11806502 ( 36) CAACTCTG 1 chr4:1029360-1029480 ( 52) CAACTCTG 1 chr3L:3159585-3159705 ( 10) CAGCCCTA 1 chrX:16598536-16598656 ( 49) CAGCCCTA 1 chr3L:3209032-3209152 ( 103) TAGCACTG 1 chr3R:10049067-10049187 ( 96) TAGCACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCACTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9372 E= 1.2e-014 -1197 223 -1197 -256 177 -1197 -1197 -1197 54 -1197 147 -1197 -1197 230 -1197 -1197 131 -44 -1197 -124 -1197 230 -1197 -1197 -1197 -1197 -1197 176 -23 -1197 185 -1197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCACTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 1.2e-014 0.000000 0.950000 0.000000 0.050000 1.000000 0.000000 0.000000 0.000000 0.425000 0.000000 0.575000 0.000000 0.000000 1.000000 0.000000 0.000000 0.725000 0.150000 0.000000 0.125000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.250000 0.000000 0.750000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCACTG MEME-1 regular expression -------------------------------------------------------------------------------- CA[GA]CACT[GA] -------------------------------------------------------------------------------- Time 7.77 secs. ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-2 width = 8 sites = 40 llr = 365 E-value = 2.6e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2a:::a1a pos.-specific C 1::a:::: probability G :1::a::: matrix T 7:a:::9: bits 2.3 ** 2.1 ** 1.8 *** * 1.6 ***** * Relative 1.4 ******* Entropy 1.2 ******* (13.2 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14170407-14170527 6 2.75e-05 CTCCT TATCGATA GGCGGCGATA chrX:16073457-16073577 88 2.75e-05 TGCGCTTGGC TATCGATA TGGACCTAAG chrX:6678178-6678298 21 2.75e-05 AACGGTCTGC TATCGATA GTTGTAGTTT chrX:1477008-1477128 29 2.75e-05 CGCGCAGAGC TATCGATA AGTATCGCGA chr3R:20634730-20634850 34 2.75e-05 CGCTGGTTAA TATCGATA GTGTTTCATT chr2R:21312292-21312412 79 2.75e-05 CCTGTTGATA TATCGATA GCGTTATATG chr3L:8121706-8121826 52 2.75e-05 TAAGTAGAGT TATCGATA AGAGCGTCCA chrX:1773608-1773728 104 2.75e-05 ACGATGTAAG TATCGATA TTAGATATT chrX:1033211-1033331 15 2.75e-05 GCGCCGATAC TATCGATA CAAGCCCAGT chr2L:5325010-5325130 26 2.75e-05 ACTATTTTGT TATCGATA TCTATGCAGC chr2L:1177601-1177721 82 2.75e-05 ATCGGTCAGT TATCGATA ACTGGCAGTC chrX:13285579-13285699 63 2.75e-05 TGTTCGATAC TATCGATA CGGTCGTAGA chr3R:15367622-15367742 97 2.75e-05 GCATATTATT TATCGATA ACTTGGGCGC chrX:13296954-13297074 110 2.75e-05 GCTCCAGCGT TATCGATA ACA chrX:9605920-9606040 63 2.75e-05 CTATCGCGCT TATCGATA AGTGGCGCGG chrX:10385810-10385930 91 2.75e-05 CCCATCGGAC TATCGATA AAGTCGAACT chr3R:10412874-10412994 38 2.75e-05 CTTCGCTGTC TATCGATA GCCAGCGATA chr2R:10252411-10252531 27 2.75e-05 CCCGATACCT TATCGATA CTATCGATGT chr3L:834009-834129 9 2.75e-05 TTGTTGAC TATCGATA TACCAACTTC chrX:20159964-20160084 71 2.75e-05 TATCAATATG TATCGATA TATTTAGAGA chrX:15859974-15860094 95 2.75e-05 GTATCAATGC TATCGATA TCCGCATACA chr3R:25249260-25249380 5 5.48e-05 TAGC AATCGATA GTTGCTATAG chr3L:19914885-19915005 45 5.48e-05 GGCCCCTAAA AATCGATA AGGTGAAAGT chr2L:10278807-10278927 73 5.48e-05 CTCACTGCGC AATCGATA ACGGAACTGG chr2L:9890771-9890891 60 5.48e-05 GGTAGCAAAC AATCGATA TTAATATCAA chr2R:10437363-10437483 33 5.48e-05 AGTTAAGTAT AATCGATA GATTCCTGCT chr2R:7653916-7654036 54 5.48e-05 GCTATCGACG AATCGATA CATGCTTTCC chrX:21035332-21035452 92 5.48e-05 TGGGTATCGT AATCGATA GTTGCGAAAT chrX:19663969-19664089 67 5.48e-05 GGCGGCAAGA AATCGATA TAACTAGTTG chr2L:10277498-10277618 103 7.37e-05 GAAACGTATA CATCGATA AGAGCCATCG chrX:15835430-15835550 96 7.37e-05 AGTGAAAAAA CATCGATA CCACATTCAA chrX:7102268-7102388 55 7.37e-05 GGCGATGTAA CATCGATA GCTCGCCGTT chrX:17842046-17842166 89 7.37e-05 TAGACGTCTG CATCGATA GTATCGCATA chr3R:24753652-24753772 110 1.01e-04 TTTTTAAGTC TATCGAAA ACC chr3R:29835442-29835562 75 1.01e-04 GTGCTGTGGT TATCGAAA ACAATAGTAT chrX:3671523-3671643 76 1.01e-04 AGCGTTTATA TATCGAAA TATATTCAAA chr3R:10311537-10311657 86 1.01e-04 GTGATCTTTC TATCGAAA ATGTTTTATC chr2L:20106733-20106853 106 1.21e-04 GCGACAGCTA TGTCGATA CTGGTTC chrX:20169984-20170104 20 1.21e-04 GATTGACAGA TGTCGATA ACTATCGTTG chr3L:10661394-10661514 34 1.75e-04 TACCATATCG TAACGATA TATCGCACGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14170407-14170527 2.8e-05 5_[+2]_107 chrX:16073457-16073577 2.8e-05 87_[+2]_25 chrX:6678178-6678298 2.8e-05 20_[+2]_92 chrX:1477008-1477128 2.8e-05 28_[+2]_84 chr3R:20634730-20634850 2.8e-05 33_[+2]_79 chr2R:21312292-21312412 2.8e-05 78_[+2]_34 chr3L:8121706-8121826 2.8e-05 51_[+2]_61 chrX:1773608-1773728 2.8e-05 103_[+2]_9 chrX:1033211-1033331 2.8e-05 14_[+2]_98 chr2L:5325010-5325130 2.8e-05 25_[+2]_87 chr2L:1177601-1177721 2.8e-05 81_[+2]_31 chrX:13285579-13285699 2.8e-05 62_[+2]_50 chr3R:15367622-15367742 2.8e-05 96_[+2]_16 chrX:13296954-13297074 2.8e-05 109_[+2]_3 chrX:9605920-9606040 2.8e-05 62_[+2]_50 chrX:10385810-10385930 2.8e-05 90_[+2]_22 chr3R:10412874-10412994 2.8e-05 37_[+2]_75 chr2R:10252411-10252531 2.8e-05 26_[+2]_86 chr3L:834009-834129 2.8e-05 8_[+2]_104 chrX:20159964-20160084 2.8e-05 70_[+2]_42 chrX:15859974-15860094 2.8e-05 94_[+2]_18 chr3R:25249260-25249380 5.5e-05 4_[+2]_108 chr3L:19914885-19915005 5.5e-05 44_[+2]_68 chr2L:10278807-10278927 5.5e-05 72_[+2]_40 chr2L:9890771-9890891 5.5e-05 59_[+2]_53 chr2R:10437363-10437483 5.5e-05 32_[+2]_80 chr2R:7653916-7654036 5.5e-05 53_[+2]_59 chrX:21035332-21035452 5.5e-05 91_[+2]_21 chrX:19663969-19664089 5.5e-05 66_[+2]_46 chr2L:10277498-10277618 7.4e-05 102_[+2]_10 chrX:15835430-15835550 7.4e-05 95_[+2]_17 chrX:7102268-7102388 7.4e-05 54_[+2]_58 chrX:17842046-17842166 7.4e-05 88_[+2]_24 chr3R:24753652-24753772 0.0001 109_[+2]_3 chr3R:29835442-29835562 0.0001 74_[+2]_38 chrX:3671523-3671643 0.0001 75_[+2]_37 chr3R:10311537-10311657 0.0001 85_[+2]_27 chr2L:20106733-20106853 0.00012 105_[+2]_7 chrX:20169984-20170104 0.00012 19_[+2]_93 chr3L:10661394-10661514 0.00017 33_[+2]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=40 chr2R:14170407-14170527 ( 6) TATCGATA 1 chrX:16073457-16073577 ( 88) TATCGATA 1 chrX:6678178-6678298 ( 21) TATCGATA 1 chrX:1477008-1477128 ( 29) TATCGATA 1 chr3R:20634730-20634850 ( 34) TATCGATA 1 chr2R:21312292-21312412 ( 79) TATCGATA 1 chr3L:8121706-8121826 ( 52) TATCGATA 1 chrX:1773608-1773728 ( 104) TATCGATA 1 chrX:1033211-1033331 ( 15) TATCGATA 1 chr2L:5325010-5325130 ( 26) TATCGATA 1 chr2L:1177601-1177721 ( 82) TATCGATA 1 chrX:13285579-13285699 ( 63) TATCGATA 1 chr3R:15367622-15367742 ( 97) TATCGATA 1 chrX:13296954-13297074 ( 110) TATCGATA 1 chrX:9605920-9606040 ( 63) TATCGATA 1 chrX:10385810-10385930 ( 91) TATCGATA 1 chr3R:10412874-10412994 ( 38) TATCGATA 1 chr2R:10252411-10252531 ( 27) TATCGATA 1 chr3L:834009-834129 ( 9) TATCGATA 1 chrX:20159964-20160084 ( 71) TATCGATA 1 chrX:15859974-15860094 ( 95) TATCGATA 1 chr3R:25249260-25249380 ( 5) AATCGATA 1 chr3L:19914885-19915005 ( 45) AATCGATA 1 chr2L:10278807-10278927 ( 73) AATCGATA 1 chr2L:9890771-9890891 ( 60) AATCGATA 1 chr2R:10437363-10437483 ( 33) AATCGATA 1 chr2R:7653916-7654036 ( 54) AATCGATA 1 chrX:21035332-21035452 ( 92) AATCGATA 1 chrX:19663969-19664089 ( 67) AATCGATA 1 chr2L:10277498-10277618 ( 103) CATCGATA 1 chrX:15835430-15835550 ( 96) CATCGATA 1 chrX:7102268-7102388 ( 55) CATCGATA 1 chrX:17842046-17842166 ( 89) CATCGATA 1 chr3R:24753652-24753772 ( 110) TATCGAAA 1 chr3R:29835442-29835562 ( 75) TATCGAAA 1 chrX:3671523-3671643 ( 76) TATCGAAA 1 chr3R:10311537-10311657 ( 86) TATCGAAA 1 chr2L:20106733-20106853 ( 106) TGTCGATA 1 chrX:20169984-20170104 ( 20) TGTCGATA 1 chr3L:10661394-10661514 ( 34) TAACGATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.71386 E= 2.6e-013 -55 -102 -1197 124 170 -1197 -206 -1197 -355 -1197 -1197 172 -1197 230 -1197 -1197 -1197 -1197 226 -1197 177 -1197 -1197 -1197 -155 -1197 -1197 160 177 -1197 -1197 -1197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 2.6e-013 0.200000 0.100000 0.000000 0.700000 0.950000 0.000000 0.050000 0.000000 0.025000 0.000000 0.000000 0.975000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.100000 0.000000 0.000000 0.900000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-2 regular expression -------------------------------------------------------------------------------- [TA]ATCGATA -------------------------------------------------------------------------------- Time 14.18 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCTGWT MEME-3 width = 8 sites = 36 llr = 331 E-value = 2.2e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCTGWT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a::1:41 pos.-specific C a:1a1::: probability G ::9::a:: matrix T ::::8:69 bits 2.3 * * * 2.1 * * * 1.8 ** * * 1.6 **** * Relative 1.4 **** * Entropy 1.2 **** * * (13.3 bits) 0.9 ****** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGCTGTT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:12436317-12436437 105 1.35e-05 CGTTGACAAG CAGCTGTT TGTGCTGC chr3L:18667250-18667370 113 1.35e-05 CTTTGCGCAT CAGCTGTT chr2L:8437312-8437432 98 1.35e-05 ACTGTTCAGC CAGCTGTT TACTCTTTAC chr2R:21312292-21312412 109 1.35e-05 AAACTCACCA CAGCTGTT ATCG chrX:11137249-11137369 49 1.35e-05 TTAAAAATGT CAGCTGTT TTGGAATTTA chr2R:9251952-9252072 71 1.35e-05 CCCTTCGCAA CAGCTGTT GTGAATCTGG chr2R:6871339-6871459 37 1.35e-05 GATCGTCGAA CAGCTGTT GTTCGCCGAG chr3L:4193869-4193989 103 1.35e-05 AAGAAGCAAT CAGCTGTT GCCGTTTTCA chr3L:11534634-11534754 4 1.35e-05 AAT CAGCTGTT CGAACGCTCT chr2R:12198836-12198956 34 1.35e-05 TCAGTGTTAC CAGCTGTT GTGCTGAACA chr3R:9010799-9010919 56 1.35e-05 ATGCCTCTAT CAGCTGTT GGCTTAGTGC chr2L:8438193-8438313 93 1.35e-05 GCACTGGAAA CAGCTGTT TAAAAAAGCG chrX:17183604-17183724 2 1.35e-05 A CAGCTGTT GTTTTTCCCA chr2R:16772649-16772769 10 2.70e-05 GCTCGCGCA CAGCTGAT TTGCTAGAGA chr2R:16291430-16291550 34 2.70e-05 CACAACGCCG CAGCTGAT TGTGTTTTTG chrX:11124852-11124972 89 2.70e-05 AATTATCAGA CAGCTGAT TTTTTCCCAT chr2L:5907008-5907128 94 2.70e-05 AAAATGTGAA CAGCTGAT ACCACTGGCA chr4:696008-696128 46 2.70e-05 GAACTGAAAG CAGCTGAT CAGATGCGAT chrX:14805878-14805998 103 2.70e-05 AATGCACTGC CAGCTGAT TCAATACCTC chr2L:3372531-3372651 58 2.70e-05 AATTTCTATA CAGCTGAT TTCTACACTC chr3L:3209032-3209152 28 4.02e-05 CTTACAAAAA CACCTGTT CTTCGGTGTT chr2R:19293138-19293258 52 4.02e-05 CTGCCAATGT CACCTGTT TTTTGctctc chr2L:6561630-6561750 66 4.02e-05 GTAATCTAGT CACCTGTT GCATGTGATT chr3R:14308801-14308921 67 4.95e-05 AAGGCCACCG CAGCCGTT GCTCGGTAAG chrX:11137047-11137167 46 4.95e-05 TGCTGGCAAT CAGCCGTT GTGTTTGAAA chr2R:4744305-4744425 21 6.29e-05 ATTCATACAT CAGCAGTT TACACAAACA chr3L:8121706-8121826 17 6.29e-05 CGGAAGATTT CAGCAGTT TAAATATTGG chr3R:13819104-13819224 102 6.29e-05 TCAGTGACGT CAGCAGTT GGCGGAAGGA chrX:16695837-16695957 8 7.63e-05 AAGCTGG CAGCTGTA AAATTGCAGC chr2L:3059292-3059412 68 8.94e-05 TGCGCGGCAT CACCTGAT TTGCAATTTC chr3L:8748983-8749103 58 8.94e-05 GCATTCTGCA CACCTGAT CTAGCACTCA chr2L:16881200-16881320 111 9.86e-05 GGACACGAAT CAGCCGAT CG chr3L:5751714-5751834 79 1.12e-04 GTGCTTCTTT CAGCAGAT CAAATCGATG chr3L:14564585-14564705 113 1.25e-04 GCTTACGGGG CAGCTGAA chr3R:5302089-5302209 104 1.25e-04 CCTGGCTGCG CAGCTGAA AAAACCTTT chr3L:14204585-14204705 45 1.25e-04 AATTATTTGG CAGCTGAA AACGGCTTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:12436317-12436437 1.4e-05 104_[+3]_8 chr3L:18667250-18667370 1.4e-05 112_[+3] chr2L:8437312-8437432 1.4e-05 97_[+3]_15 chr2R:21312292-21312412 1.4e-05 108_[+3]_4 chrX:11137249-11137369 1.4e-05 48_[+3]_64 chr2R:9251952-9252072 1.4e-05 70_[+3]_42 chr2R:6871339-6871459 1.4e-05 36_[+3]_76 chr3L:4193869-4193989 1.4e-05 102_[+3]_10 chr3L:11534634-11534754 1.4e-05 3_[+3]_109 chr2R:12198836-12198956 1.4e-05 33_[+3]_79 chr3R:9010799-9010919 1.4e-05 55_[+3]_57 chr2L:8438193-8438313 1.4e-05 92_[+3]_20 chrX:17183604-17183724 1.4e-05 1_[+3]_111 chr2R:16772649-16772769 2.7e-05 9_[+3]_103 chr2R:16291430-16291550 2.7e-05 33_[+3]_79 chrX:11124852-11124972 2.7e-05 88_[+3]_24 chr2L:5907008-5907128 2.7e-05 93_[+3]_19 chr4:696008-696128 2.7e-05 45_[+3]_67 chrX:14805878-14805998 2.7e-05 102_[+3]_10 chr2L:3372531-3372651 2.7e-05 57_[+3]_55 chr3L:3209032-3209152 4e-05 27_[+3]_85 chr2R:19293138-19293258 4e-05 51_[+3]_61 chr2L:6561630-6561750 4e-05 65_[+3]_47 chr3R:14308801-14308921 4.9e-05 66_[+3]_46 chrX:11137047-11137167 4.9e-05 45_[+3]_67 chr2R:4744305-4744425 6.3e-05 20_[+3]_92 chr3L:8121706-8121826 6.3e-05 16_[+3]_96 chr3R:13819104-13819224 6.3e-05 101_[+3]_11 chrX:16695837-16695957 7.6e-05 7_[+3]_105 chr2L:3059292-3059412 8.9e-05 67_[+3]_45 chr3L:8748983-8749103 8.9e-05 57_[+3]_55 chr2L:16881200-16881320 9.9e-05 110_[+3]_2 chr3L:5751714-5751834 0.00011 78_[+3]_34 chr3L:14564585-14564705 0.00013 112_[+3] chr3R:5302089-5302209 0.00013 103_[+3]_9 chr3L:14204585-14204705 0.00013 44_[+3]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCTGWT width=8 seqs=36 chr2L:12436317-12436437 ( 105) CAGCTGTT 1 chr3L:18667250-18667370 ( 113) CAGCTGTT 1 chr2L:8437312-8437432 ( 98) CAGCTGTT 1 chr2R:21312292-21312412 ( 109) CAGCTGTT 1 chrX:11137249-11137369 ( 49) CAGCTGTT 1 chr2R:9251952-9252072 ( 71) CAGCTGTT 1 chr2R:6871339-6871459 ( 37) CAGCTGTT 1 chr3L:4193869-4193989 ( 103) CAGCTGTT 1 chr3L:11534634-11534754 ( 4) CAGCTGTT 1 chr2R:12198836-12198956 ( 34) CAGCTGTT 1 chr3R:9010799-9010919 ( 56) CAGCTGTT 1 chr2L:8438193-8438313 ( 93) CAGCTGTT 1 chrX:17183604-17183724 ( 2) CAGCTGTT 1 chr2R:16772649-16772769 ( 10) CAGCTGAT 1 chr2R:16291430-16291550 ( 34) CAGCTGAT 1 chrX:11124852-11124972 ( 89) CAGCTGAT 1 chr2L:5907008-5907128 ( 94) CAGCTGAT 1 chr4:696008-696128 ( 46) CAGCTGAT 1 chrX:14805878-14805998 ( 103) CAGCTGAT 1 chr2L:3372531-3372651 ( 58) CAGCTGAT 1 chr3L:3209032-3209152 ( 28) CACCTGTT 1 chr2R:19293138-19293258 ( 52) CACCTGTT 1 chr2L:6561630-6561750 ( 66) CACCTGTT 1 chr3R:14308801-14308921 ( 67) CAGCCGTT 1 chrX:11137047-11137167 ( 46) CAGCCGTT 1 chr2R:4744305-4744425 ( 21) CAGCAGTT 1 chr3L:8121706-8121826 ( 17) CAGCAGTT 1 chr3R:13819104-13819224 ( 102) CAGCAGTT 1 chrX:16695837-16695957 ( 8) CAGCTGTA 1 chr2L:3059292-3059412 ( 68) CACCTGAT 1 chr3L:8748983-8749103 ( 58) CACCTGAT 1 chr2L:16881200-16881320 ( 111) CAGCCGAT 1 chr3L:5751714-5751834 ( 79) CAGCAGAT 1 chr3L:14564585-14564705 ( 113) CAGCTGAA 1 chr3R:5302089-5302209 ( 104) CAGCTGAA 1 chr3L:14204585-14204705 ( 45) CAGCTGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.463 E= 2.2e-010 -1181 230 -1181 -1181 177 -1181 -1181 -1181 -1181 -55 205 -1181 -1181 230 -1181 -1181 -140 -128 -1181 144 -1181 -1181 226 -1181 41 -1181 -1181 105 -140 -1181 -1181 159 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 2.2e-010 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.138889 0.861111 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.083333 0.000000 0.805556 0.000000 0.000000 1.000000 0.000000 0.388889 0.000000 0.000000 0.611111 0.111111 0.000000 0.000000 0.888889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWT MEME-3 regular expression -------------------------------------------------------------------------------- CAGCTG[TA]T -------------------------------------------------------------------------------- Time 20.54 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGTGYTG MEME-4 width = 8 sites = 30 llr = 290 E-value = 4.9e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGTGYTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:1:::: pos.-specific C 7::::3:: probability G ::a:a::a matrix T 3::9:7a: bits 2.3 * * * 2.1 * * * 1.8 ** * ** 1.6 ** * ** Relative 1.4 ***** ** Entropy 1.2 ***** ** (13.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGTGTTG consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGYTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:16772649-16772769 43 1.39e-05 CCATGGGCGG CAGTGTTG TAAAACATTT chr3L:9729911-9730031 35 1.39e-05 CTCACTTTGC CAGTGTTG TAAAACCGGG chr2R:16322129-16322249 33 1.39e-05 TCGTTATCGG CAGTGTTG GTAAAGGCCC chrX:11340927-11341047 101 1.39e-05 GTTGGGCAGC CAGTGTTG CCAACAAAAA chr2R:10437363-10437483 7 1.39e-05 TAACGA CAGTGTTG GCTAAGAAAG chrX:11806382-11806502 72 1.39e-05 AGTGGTAGAT CAGTGTTG GAAAGCACGC chr2R:16230601-16230721 98 1.39e-05 AAGATTGGGT CAGTGTTG TAAAATGCTA chr3L:10661394-10661514 63 1.39e-05 AACCGCCGGA CAGTGTTG TGAAACTGTG chr3L:834009-834129 62 1.39e-05 ATGGAATTGT CAGTGTTG TAAAACCTGA chrX:1868807-1868927 18 1.39e-05 GGCTTTGTGA CAGTGTTG CACAGCGCTC chrX:19663969-19664089 34 1.39e-05 AACTGGTCGA CAGTGTTG AAAAGTTCGT chrX:2073441-2073561 14 2.34e-05 TACGTCTGGC CAGTGCTG CCGGACCAGT chr2L:4458798-4458918 83 2.34e-05 TTGCTAAATA CAGTGCTG TATAACGGTC chrX:1477008-1477128 54 2.34e-05 CGAGATAAAC CAGTGCTG TAAAGCGCCG chr2R:24780806-24780926 44 2.34e-05 CGCAATTAGC CAGTGCTG GAAAATGTCT chrX:19494391-19494511 54 2.34e-05 AATGTGCGGC CAGTGCTG CAGAACGCAG chrX:8906906-8907026 78 2.34e-05 TCACTGTTCC CAGTGCTG CCAGACAGCG chr2L:6561630-6561750 30 2.34e-05 AAGAGAAATT CAGTGCTG GAAAACGGAC chrX:11137047-11137167 33 2.34e-05 GCAGCGCAAA CAGTGCTG GCAATCAGCC chrX:19704168-19704288 82 4.36e-05 AAAGCTGGTT TAGTGTTG CTTGGACTTG chr2R:6993977-6994097 2 4.36e-05 T TAGTGTTG CTTGCTATCT chr2R:10838731-10838851 50 4.36e-05 CAGTTGGCCT TAGTGTTG AACAACGCAC chrX:11905381-11905501 19 4.36e-05 CATCAATCGC TAGTGTTG GGCAAGTTGA chr2R:22066808-22066928 18 4.36e-05 CGCCAAAAAT TAGTGTTG TCAAACGCAA chrX:21369178-21369298 55 4.36e-05 CCTTCACAAG TAGTGTTG AAAAGTATTG chr3L:7338931-7339051 35 4.36e-05 TGTAGCTGCC TAGTGTTG GGGGTGGTTG chr2L:3478044-3478164 7 5.75e-05 GGCGTT TAGTGCTG TTGGCTAACT chrX:17842046-17842166 40 7.13e-05 TGGCCAGAGC CAGAGTTG CCACCCTGCA chrX:10474652-10474772 12 7.13e-05 CAAGCGTTGC CAGAGTTG TGTGGGTCGA chrX:11124852-11124972 58 8.07e-05 TTGTTCCAAT CAGAGCTG GTATATATCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGYTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16772649-16772769 1.4e-05 42_[+4]_70 chr3L:9729911-9730031 1.4e-05 34_[+4]_78 chr2R:16322129-16322249 1.4e-05 32_[+4]_80 chrX:11340927-11341047 1.4e-05 100_[+4]_12 chr2R:10437363-10437483 1.4e-05 6_[+4]_106 chrX:11806382-11806502 1.4e-05 71_[+4]_41 chr2R:16230601-16230721 1.4e-05 97_[+4]_15 chr3L:10661394-10661514 1.4e-05 62_[+4]_50 chr3L:834009-834129 1.4e-05 61_[+4]_51 chrX:1868807-1868927 1.4e-05 17_[+4]_95 chrX:19663969-19664089 1.4e-05 33_[+4]_79 chrX:2073441-2073561 2.3e-05 13_[+4]_99 chr2L:4458798-4458918 2.3e-05 82_[+4]_30 chrX:1477008-1477128 2.3e-05 53_[+4]_59 chr2R:24780806-24780926 2.3e-05 43_[+4]_69 chrX:19494391-19494511 2.3e-05 53_[+4]_59 chrX:8906906-8907026 2.3e-05 77_[+4]_35 chr2L:6561630-6561750 2.3e-05 29_[+4]_83 chrX:11137047-11137167 2.3e-05 32_[+4]_80 chrX:19704168-19704288 4.4e-05 81_[+4]_31 chr2R:6993977-6994097 4.4e-05 1_[+4]_111 chr2R:10838731-10838851 4.4e-05 49_[+4]_63 chrX:11905381-11905501 4.4e-05 18_[+4]_94 chr2R:22066808-22066928 4.4e-05 17_[+4]_95 chrX:21369178-21369298 4.4e-05 54_[+4]_58 chr3L:7338931-7339051 4.4e-05 34_[+4]_78 chr2L:3478044-3478164 5.8e-05 6_[+4]_106 chrX:17842046-17842166 7.1e-05 39_[+4]_73 chrX:10474652-10474772 7.1e-05 11_[+4]_101 chrX:11124852-11124972 8.1e-05 57_[+4]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGYTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGTGYTG width=8 seqs=30 chr2R:16772649-16772769 ( 43) CAGTGTTG 1 chr3L:9729911-9730031 ( 35) CAGTGTTG 1 chr2R:16322129-16322249 ( 33) CAGTGTTG 1 chrX:11340927-11341047 ( 101) CAGTGTTG 1 chr2R:10437363-10437483 ( 7) CAGTGTTG 1 chrX:11806382-11806502 ( 72) CAGTGTTG 1 chr2R:16230601-16230721 ( 98) CAGTGTTG 1 chr3L:10661394-10661514 ( 63) CAGTGTTG 1 chr3L:834009-834129 ( 62) CAGTGTTG 1 chrX:1868807-1868927 ( 18) CAGTGTTG 1 chrX:19663969-19664089 ( 34) CAGTGTTG 1 chrX:2073441-2073561 ( 14) CAGTGCTG 1 chr2L:4458798-4458918 ( 83) CAGTGCTG 1 chrX:1477008-1477128 ( 54) CAGTGCTG 1 chr2R:24780806-24780926 ( 44) CAGTGCTG 1 chrX:19494391-19494511 ( 54) CAGTGCTG 1 chrX:8906906-8907026 ( 78) CAGTGCTG 1 chr2L:6561630-6561750 ( 30) CAGTGCTG 1 chrX:11137047-11137167 ( 33) CAGTGCTG 1 chrX:19704168-19704288 ( 82) TAGTGTTG 1 chr2R:6993977-6994097 ( 2) TAGTGTTG 1 chr2R:10838731-10838851 ( 50) TAGTGTTG 1 chrX:11905381-11905501 ( 19) TAGTGTTG 1 chr2R:22066808-22066928 ( 18) TAGTGTTG 1 chrX:21369178-21369298 ( 55) TAGTGTTG 1 chr3L:7338931-7339051 ( 35) TAGTGTTG 1 chr2L:3478044-3478164 ( 7) TAGTGCTG 1 chrX:17842046-17842166 ( 40) CAGAGTTG 1 chrX:10474652-10474772 ( 12) CAGAGTTG 1 chrX:11124852-11124972 ( 58) CAGAGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGYTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1531 E= 4.9e-010 -1155 185 -1155 -15 177 -1155 -1155 -1155 -1155 -1155 226 -1155 -155 -1155 -1155 160 -1155 -1155 226 -1155 -1155 72 -1155 117 -1155 -1155 -1155 176 -1155 -1155 226 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGYTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 4.9e-010 0.000000 0.733333 0.000000 0.266667 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.100000 0.000000 0.000000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGTGYTG MEME-4 regular expression -------------------------------------------------------------------------------- [CT]AGTG[TC]TG -------------------------------------------------------------------------------- Time 26.78 secs. ******************************************************************************** ******************************************************************************** MOTIF GSYGSCRM MEME-5 width = 8 sites = 50 llr = 404 E-value = 1.2e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSYGSCRM MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::56 pos.-specific C 146:5a14 probability G 96:a5:4: matrix T ::4::::: bits 2.3 * * 2.1 * * 1.8 * * 1.6 * * * Relative 1.4 ** *** Entropy 1.2 ****** (11.7 bits) 0.9 ****** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCGCCAA consensus CT G GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYGSCRM MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10838731-10838851 85 1.11e-05 TTCGAAAAAA GGCGCCAA TGGATTATTA chrX:1033211-1033331 4 1.11e-05 AAC GGCGCCGA TACTATCGAT chr3R:29835442-29835562 47 1.11e-05 CGATTACTTG GGCGCCAA CAAAACTGGT chr3L:4193869-4193989 27 1.11e-05 ATCAAAATTT GGCGCCAA CATTTTTGGT chr3L:14564585-14564705 44 2.24e-05 GTGTAAACAA GGCGGCAA TGTCAACAGA chr2R:14170407-14170527 14 2.24e-05 CTTATCGATA GGCGGCGA TAGATGCGAA chrX:7102268-7102388 42 2.24e-05 TGGTGGGCAG GGCGGCGA TGTAACATCG chrX:19663969-19664089 57 2.24e-05 TTCGTAAACT GGCGGCAA GAAATCGATA chrX:17820361-17820481 7 3.00e-05 TGCACT GGCGCCAC CTAGGTATGC chrX:8152810-8152930 42 3.00e-05 TTTCAAATGT GGCGCCAC AACCAAGGTA chr2L:8437312-8437432 13 3.79e-05 ATGCGAACGA GGCGGCGC AAACAGAATT chrX:11136454-11136574 73 3.79e-05 TGTGGGCACT GGCGGCAC TGTGCAACAC chr3R:11759637-11759757 31 3.79e-05 TCTTCTTCTG GGCGGCAC GTTTTTTGCA chr3R:8357191-8357311 81 4.87e-05 TGGCTAGAAG GCCGCCAA GCGAGCAGAG chr3R:18167686-18167806 48 6.72e-05 GTCAGGCAAC GCCGCCGC ACGCCTGCAG chr3R:22518445-22518565 51 6.72e-05 ACCACCCCTC GCCGCCGC CCACAGTGGG chrX:8479341-8479461 52 6.72e-05 TTTGGCCATC GCCGCCAC GCCGGTTAGT chr2R:6652906-6653026 32 9.10e-05 ACGCCGTGGA GGTGCCAA TATTTTGAGT chrX:8273814-8273934 97 9.10e-05 GGGTGGACGG GGTGCCAA CCGAGTGGGG chr2R:9116515-9116635 86 9.10e-05 AGCCAAATCC GCCGGCGC TTAACAACAC chrX:17860890-17861010 104 9.10e-05 GTGTGTGGAT GGTGCCGA CGTGAGTGC chr3R:7536266-7536386 60 9.10e-05 GTTCGCGATG GGTGCCGA CACTCTAATG chrX:17183604-17183724 99 9.10e-05 GCTGGAGATG GGTGCCAA ACAACAGAAT chr3R:16482456-16482576 30 1.07e-04 TGAGTTGGCA GGTGGCAA CGTATTAAAA chr2R:22066808-22066928 52 1.07e-04 AATCCGACTA GGTGGCAA CGCCGCGACG chr2L:5278502-5278622 65 1.30e-04 TTGCATCGGA GGTGGCAC TATCGTGGAC chrX:14954002-14954122 85 1.30e-04 ACAACATCCA GGTGGCGC TGTTTTTGTT chr3L:8748983-8749103 42 1.30e-04 CTCACACATA GGTGGCGC ATTCTGCACA chr2R:19293138-19293258 41 1.46e-04 CTATTGCGTA GCTGCCAA TGTCACCTGT chrX:4117525-4117645 5 1.46e-04 CAGG GCTGCCAA CTCGATGGGC chrX:15859974-15860094 73 1.46e-04 GAACAGCCTG GCTGCCGA ATATGTATCA chrX:11483378-11483498 39 1.62e-04 CACTGTACCA GCTGGCAA TGTAAATTGG chrX:16695837-16695957 45 1.62e-04 AAATGTGCAG GCTGGCAA AAGCAGAATG chr2L:5325010-5325130 3 1.62e-04 TT GCTGGCGA TGGCCACTAT chrX:17830809-17830929 26 1.62e-04 TTTTCAGTCC GCTGGCGA ACGTTGTTGC chr2R:7673137-7673257 47 1.62e-04 CAAATATTTG GCTGGCAA ACGATGATAC chr3R:20634730-20634850 19 1.84e-04 GGCGTTCTAG GCTGGCGC TGGTTAATAT chr2L:1177601-1177721 47 1.84e-04 ACAACTGTTA GCTGGCAC TTGGTAGCCC chrX:15594626-15594746 63 1.84e-04 TACCCGCCTA GCTGGCGC TTTTGTGCTA chr3R:10049067-10049187 52 1.88e-04 AGTCTATTTT GGCGCCCA ACTACCGAAC chr3L:5807521-5807641 46 1.93e-04 TTGAAGAGGC GGCGGCCA GGGGCCGAGT chr3L:18667250-18667370 33 2.07e-04 TTTTAAATCT CGCGCCAA GGTGCTCCAC chr2R:11640076-11640196 10 2.21e-04 TAAGTGGTA CGCGGCAA TTCGCGAAGA chr2R:7458781-7458901 73 2.21e-04 GGCAAAAGTT CGCGGCGA ATGACTCGGC chr3R:28587192-28587312 110 2.33e-04 GCTTTAAAAG CGCGCCAC TGT chr2L:3059292-3059412 3 2.33e-04 AA GCCGCCCA TAACAAATAA chr2R:16344369-16344489 38 2.33e-04 ATTTAATTTT GCCGCCCA ATCTTCAAAC chr3L:14789805-14789925 102 2.33e-04 AGCACTATTT CGCGCCGC TGCTCAGCAC chrX:20169984-20170104 4 2.59e-04 AGT CCCGCCGA TTGACAGATG chrX:15308601-15308721 8 2.93e-04 CTGTTTA CCCGCCAC TCGAGAACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYGSCRM MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10838731-10838851 1.1e-05 84_[+5]_28 chrX:1033211-1033331 1.1e-05 3_[+5]_109 chr3R:29835442-29835562 1.1e-05 46_[+5]_66 chr3L:4193869-4193989 1.1e-05 26_[+5]_86 chr3L:14564585-14564705 2.2e-05 43_[+5]_69 chr2R:14170407-14170527 2.2e-05 13_[+5]_99 chrX:7102268-7102388 2.2e-05 41_[+5]_71 chrX:19663969-19664089 2.2e-05 56_[+5]_56 chrX:17820361-17820481 3e-05 6_[+5]_106 chrX:8152810-8152930 3e-05 41_[+5]_71 chr2L:8437312-8437432 3.8e-05 12_[+5]_100 chrX:11136454-11136574 3.8e-05 72_[+5]_40 chr3R:11759637-11759757 3.8e-05 30_[+5]_82 chr3R:8357191-8357311 4.9e-05 80_[+5]_32 chr3R:18167686-18167806 6.7e-05 47_[+5]_65 chr3R:22518445-22518565 6.7e-05 50_[+5]_62 chrX:8479341-8479461 6.7e-05 51_[+5]_61 chr2R:6652906-6653026 9.1e-05 31_[+5]_81 chrX:8273814-8273934 9.1e-05 96_[+5]_16 chr2R:9116515-9116635 9.1e-05 85_[+5]_27 chrX:17860890-17861010 9.1e-05 103_[+5]_9 chr3R:7536266-7536386 9.1e-05 59_[+5]_53 chrX:17183604-17183724 9.1e-05 98_[+5]_14 chr3R:16482456-16482576 0.00011 29_[+5]_83 chr2R:22066808-22066928 0.00011 51_[+5]_61 chr2L:5278502-5278622 0.00013 64_[+5]_48 chrX:14954002-14954122 0.00013 84_[+5]_28 chr3L:8748983-8749103 0.00013 41_[+5]_71 chr2R:19293138-19293258 0.00015 40_[+5]_72 chrX:4117525-4117645 0.00015 4_[+5]_108 chrX:15859974-15860094 0.00015 72_[+5]_40 chrX:11483378-11483498 0.00016 38_[+5]_74 chrX:16695837-16695957 0.00016 44_[+5]_68 chr2L:5325010-5325130 0.00016 2_[+5]_110 chrX:17830809-17830929 0.00016 25_[+5]_87 chr2R:7673137-7673257 0.00016 46_[+5]_66 chr3R:20634730-20634850 0.00018 18_[+5]_94 chr2L:1177601-1177721 0.00018 46_[+5]_66 chrX:15594626-15594746 0.00018 62_[+5]_50 chr3R:10049067-10049187 0.00019 51_[+5]_61 chr3L:5807521-5807641 0.00019 45_[+5]_67 chr3L:18667250-18667370 0.00021 32_[+5]_80 chr2R:11640076-11640196 0.00022 9_[+5]_103 chr2R:7458781-7458901 0.00022 72_[+5]_40 chr3R:28587192-28587312 0.00023 109_[+5]_3 chr2L:3059292-3059412 0.00023 2_[+5]_110 chr2R:16344369-16344489 0.00023 37_[+5]_75 chr3L:14789805-14789925 0.00023 101_[+5]_11 chrX:20169984-20170104 0.00026 3_[+5]_109 chrX:15308601-15308721 0.00029 7_[+5]_105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYGSCRM MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSYGSCRM width=8 seqs=50 chr2R:10838731-10838851 ( 85) GGCGCCAA 1 chrX:1033211-1033331 ( 4) GGCGCCGA 1 chr3R:29835442-29835562 ( 47) GGCGCCAA 1 chr3L:4193869-4193989 ( 27) GGCGCCAA 1 chr3L:14564585-14564705 ( 44) GGCGGCAA 1 chr2R:14170407-14170527 ( 14) GGCGGCGA 1 chrX:7102268-7102388 ( 42) GGCGGCGA 1 chrX:19663969-19664089 ( 57) GGCGGCAA 1 chrX:17820361-17820481 ( 7) GGCGCCAC 1 chrX:8152810-8152930 ( 42) GGCGCCAC 1 chr2L:8437312-8437432 ( 13) GGCGGCGC 1 chrX:11136454-11136574 ( 73) GGCGGCAC 1 chr3R:11759637-11759757 ( 31) GGCGGCAC 1 chr3R:8357191-8357311 ( 81) GCCGCCAA 1 chr3R:18167686-18167806 ( 48) GCCGCCGC 1 chr3R:22518445-22518565 ( 51) GCCGCCGC 1 chrX:8479341-8479461 ( 52) GCCGCCAC 1 chr2R:6652906-6653026 ( 32) GGTGCCAA 1 chrX:8273814-8273934 ( 97) GGTGCCAA 1 chr2R:9116515-9116635 ( 86) GCCGGCGC 1 chrX:17860890-17861010 ( 104) GGTGCCGA 1 chr3R:7536266-7536386 ( 60) GGTGCCGA 1 chrX:17183604-17183724 ( 99) GGTGCCAA 1 chr3R:16482456-16482576 ( 30) GGTGGCAA 1 chr2R:22066808-22066928 ( 52) GGTGGCAA 1 chr2L:5278502-5278622 ( 65) GGTGGCAC 1 chrX:14954002-14954122 ( 85) GGTGGCGC 1 chr3L:8748983-8749103 ( 42) GGTGGCGC 1 chr2R:19293138-19293258 ( 41) GCTGCCAA 1 chrX:4117525-4117645 ( 5) GCTGCCAA 1 chrX:15859974-15860094 ( 73) GCTGCCGA 1 chrX:11483378-11483498 ( 39) GCTGGCAA 1 chrX:16695837-16695957 ( 45) GCTGGCAA 1 chr2L:5325010-5325130 ( 3) GCTGGCGA 1 chrX:17830809-17830929 ( 26) GCTGGCGA 1 chr2R:7673137-7673257 ( 47) GCTGGCAA 1 chr3R:20634730-20634850 ( 19) GCTGGCGC 1 chr2L:1177601-1177721 ( 47) GCTGGCAC 1 chrX:15594626-15594746 ( 63) GCTGGCGC 1 chr3R:10049067-10049187 ( 52) GGCGCCCA 1 chr3L:5807521-5807641 ( 46) GGCGGCCA 1 chr3L:18667250-18667370 ( 33) CGCGCCAA 1 chr2R:11640076-11640196 ( 10) CGCGGCAA 1 chr2R:7458781-7458901 ( 73) CGCGGCGA 1 chr3R:28587192-28587312 ( 110) CGCGCCAC 1 chr2L:3059292-3059412 ( 3) GCCGCCCA 1 chr2R:16344369-16344489 ( 38) GCCGCCCA 1 chr3L:14789805-14789925 ( 102) CGCGCCGC 1 chrX:20169984-20170104 ( 4) CCCGCCGA 1 chrX:15308601-15308721 ( 8) CCCGCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYGSCRM MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2493 E= 1.2e-001 -1229 -54 205 -1229 -1229 98 153 -1229 -1229 152 -1229 50 -1229 -1229 226 -1229 -1229 136 121 -1229 -1229 230 -1229 -1229 88 -134 87 -1229 113 83 -1229 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYGSCRM MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 1.2e-001 0.000000 0.140000 0.860000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.580000 0.000000 0.420000 0.000000 0.000000 1.000000 0.000000 0.000000 0.520000 0.480000 0.000000 0.000000 1.000000 0.000000 0.000000 0.540000 0.080000 0.380000 0.000000 0.640000 0.360000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSYGSCRM MEME-5 regular expression -------------------------------------------------------------------------------- G[GC][CT]G[CG]C[AG][AC] -------------------------------------------------------------------------------- Time 32.99 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8479341-8479461 1.29e-01 51_[+5(6.72e-05)]_61 chrX:13972538-13972658 9.86e-01 120 chr2R:19461629-19461749 9.52e-01 120 chrX:11373484-11373604 7.83e-01 120 chrX:19663969-19664089 8.51e-06 33_[+4(1.39e-05)]_15_[+5(2.24e-05)]_\ 2_[+2(5.48e-05)]_46 chrX:11137047-11137167 7.41e-07 10_[+1(9.20e-06)]_14_[+4(2.34e-05)]_\ 5_[+3(4.95e-05)]_67 chr2L:13382546-13382666 4.25e-01 120 chrX:9395027-9395147 1.59e-01 120 chr3L:14789805-14789925 3.29e-03 90_[+1(4.15e-05)]_22 chrX:3667359-3667479 3.23e-01 120 chr3L:8748983-8749103 1.89e-02 57_[+3(8.94e-05)]_55 chr3R:17214894-17215014 1.79e-01 120 chr3R:5270924-5271044 7.64e-02 97_[+1(2.22e-05)]_15 chrX:11426062-11426182 9.91e-01 120 chr3L:7338931-7339051 9.50e-02 34_[+4(4.36e-05)]_78 chrX:8473520-8473640 1.76e-01 120 chr3R:30056106-30056226 9.73e-01 120 chrX:17183604-17183724 2.87e-03 1_[+3(1.35e-05)]_89_[+5(9.10e-05)]_\ 14 chr3R:23763161-23763281 2.47e-01 120 chrX:11350498-11350618 3.20e-02 51_[+1(9.20e-06)]_61 chrX:14954002-14954122 2.13e-02 120 chr3R:11223368-11223488 5.72e-01 120 chr3R:14070227-14070347 1.11e-03 38_[+1(5.97e-05)]_74 chr2L:16040261-16040381 6.14e-01 120 chr3R:4947884-4948004 5.75e-01 120 chrX:1900199-1900319 9.74e-01 120 chrX:11149359-11149479 2.97e-01 120 chr2L:6561630-6561750 2.86e-04 29_[+4(2.34e-05)]_28_[+3(4.02e-05)]_\ 47 chr3R:7076736-7076856 1.98e-01 120 chrX:8152810-8152930 1.74e-03 41_[+5(3.00e-05)]_14_[+1(2.22e-05)]_\ 12_[+1(7.80e-05)]_29 chr3R:10311537-10311657 3.08e-02 120 chr2R:7673137-7673257 3.01e-01 120 chr2L:8438193-8438313 1.06e-03 80_[+1(9.20e-06)]_4_[+3(1.35e-05)]_\ 20 chrX:11349903-11350023 7.74e-01 120 chrX:15594626-15594746 2.50e-01 120 chr3R:21296792-21296912 7.11e-01 120 chrX:15308601-15308721 4.54e-01 120 chr3R:7536266-7536386 3.30e-01 59_[+5(9.10e-05)]_53 chrX:10474652-10474772 6.26e-02 11_[+4(7.13e-05)]_101 chr2R:10437604-10437724 9.21e-01 120 chrX:15859974-15860094 5.32e-03 94_[+2(2.75e-05)]_8_[+2(7.37e-05)]_\ 2 chrX:8900308-8900428 9.96e-01 120 chr3R:21195771-21195891 3.84e-01 120 chr2R:21720371-21720491 8.96e-03 81_[+1(2.22e-05)]_31 chrX:16893196-16893316 4.14e-01 120 chrX:4117525-4117645 4.03e-02 120 chr3R:9010799-9010919 9.34e-03 55_[+3(1.35e-05)]_57 chr3R:11759637-11759757 1.10e-02 30_[+5(3.79e-05)]_82 chr3L:14204585-14204705 1.61e-01 120 chrX:17820361-17820481 8.25e-02 6_[+5(3.00e-05)]_106 chrX:8906906-8907026 6.30e-03 77_[+4(2.34e-05)]_35 chr3R:19158098-19158218 8.14e-02 120 chrX:16587175-16587295 7.73e-01 120 chr2L:16318429-16318549 5.52e-01 120 chrX:21035332-21035452 3.17e-02 91_[+2(5.48e-05)]_21 chrX:20169984-20170104 9.03e-03 120 chr2L:20104718-20104838 1.50e-01 120 chr2R:12198836-12198956 6.19e-04 33_[+3(1.35e-05)]_79 chrX:20159964-20160084 6.36e-03 70_[+2(2.75e-05)]_42 chrX:1868807-1868927 8.56e-02 17_[+4(1.39e-05)]_95 chr3L:834009-834129 1.82e-04 8_[+2(2.75e-05)]_45_[+4(1.39e-05)]_\ 51 chrX:19494391-19494511 3.25e-02 53_[+4(2.34e-05)]_59 chrX:2107886-2108006 4.48e-01 120 chr3R:10679299-10679419 7.48e-01 120 chrX:1304878-1304998 7.06e-01 120 chr3L:11534634-11534754 4.80e-02 3_[+3(1.35e-05)]_109 chr3R:22726709-22726829 8.01e-01 120 chr3R:22816477-22816597 2.85e-01 120 chr2R:20640718-20640838 8.79e-01 120 chr2L:1118951-1119071 4.19e-01 120 chrX:21519339-21519459 7.45e-01 120 chr3L:16804847-16804967 6.32e-01 120 chr3L:10661394-10661514 7.12e-03 62_[+4(1.39e-05)]_50 chr2L:20106733-20106853 5.98e-03 120 chr2R:10252411-10252531 8.83e-03 26_[+2(2.75e-05)]_86 chr2L:6080473-6080593 1.01e-01 120 chr2R:16139036-16139156 2.87e-01 120 chr3L:17006490-17006610 2.16e-01 120 chr3R:18438335-18438455 6.06e-01 120 chr2R:7653916-7654036 1.98e-03 53_[+2(5.48e-05)]_10_[+1(2.22e-05)]_\ 41 chr3R:10412874-10412994 8.11e-03 37_[+2(2.75e-05)]_75 chr2L:3372531-3372651 8.66e-02 57_[+3(2.70e-05)]_55 chr3L:607062-607182 2.42e-01 120 chrX:10385810-10385930 1.50e-02 90_[+2(2.75e-05)]_22 chrX:17842046-17842166 7.54e-04 39_[+4(7.13e-05)]_41_[+2(7.37e-05)]_\ 24 chrX:16803278-16803398 2.75e-01 120 chrX:10473693-10473813 2.05e-01 120 chr4:1029360-1029480 5.36e-02 51_[+1(9.11e-05)]_61 chrX:17078600-17078720 9.36e-01 120 chrX:14805878-14805998 1.34e-01 102_[+3(2.70e-05)]_10 chrX:9355582-9355702 8.17e-01 120 chr3L:4193869-4193989 5.03e-06 26_[+5(1.11e-05)]_25_[+1(2.22e-05)]_\ 35_[+3(1.35e-05)]_10 chrX:19495386-19495506 3.86e-01 120 chrX:6689000-6689120 2.74e-01 120 chrX:8884234-8884354 8.56e-01 120 chr2L:18459790-18459910 4.78e-01 120 chr2R:6871339-6871459 2.98e-02 36_[+3(1.35e-05)]_76 chr3R:13819104-13819224 5.69e-02 101_[+3(6.29e-05)]_11 chr3R:15363775-15363895 1.80e-01 67_[+1(7.80e-05)]_45 chr3L:17401085-17401205 1.74e-01 120 chr2L:21142288-21142408 1.30e-01 120 chr3L:5807521-5807641 6.09e-02 120 chrX:3448403-3448523 2.33e-01 120 chr3R:8357191-8357311 3.12e-02 80_[+5(4.87e-05)]_32 chrX:21369178-21369298 5.79e-02 54_[+4(4.36e-05)]_58 chrX:9047097-9047217 7.51e-01 120 chr2R:16344369-16344489 8.74e-02 120 chrX:7102268-7102388 2.13e-03 41_[+5(2.24e-05)]_5_[+2(7.37e-05)]_\ 58 chr3R:20558215-20558335 5.07e-01 120 chrX:3671523-3671643 1.30e-01 120 chrX:5917092-5917212 1.30e-02 120 chr3R:22518445-22518565 7.78e-02 50_[+5(6.72e-05)]_62 chrX:8260025-8260145 9.49e-01 120 chrX:9605920-9606040 3.13e-03 62_[+2(2.75e-05)]_50 chrX:16791253-16791373 7.99e-01 120 chrX:15835430-15835550 1.37e-01 95_[+2(7.37e-05)]_17 chr2R:16230601-16230721 2.28e-02 97_[+4(1.39e-05)]_15 chrX:801627-801747 9.58e-01 120 chrX:13296954-13297074 8.78e-02 109_[+2(2.75e-05)]_3 chrX:10210620-10210740 3.28e-01 120 chr2R:22066808-22066928 2.90e-04 17_[+4(4.36e-05)]_7_[+1(2.22e-05)]_\ 80 chr3R:15367622-15367742 5.52e-02 96_[+2(2.75e-05)]_16 chr3R:16482456-16482576 1.29e-01 120 chr3R:29835442-29835562 1.84e-04 46_[+5(1.11e-05)]_66 chr2R:7458781-7458901 3.70e-01 120 chr2R:9428106-9428226 6.63e-01 120 chr2L:8198880-8199000 2.08e-03 27_[+1(9.20e-06)]_85 chr2R:13239398-13239518 2.61e-02 102_[+1(4.15e-05)]_10 chrX:15697338-15697458 6.52e-03 111_[+1(9.20e-06)]_1 chrX:19762319-19762439 6.51e-03 58_[+1(2.85e-05)]_54 chrX:17830809-17830929 2.67e-01 120 chrX:13285579-13285699 7.36e-03 42_[+2(7.37e-05)]_12_[+2(2.75e-05)]_\ 17_[+2(5.48e-05)]_25 chr2L:22131267-22131387 7.52e-01 120 chrX:18320252-18320372 7.61e-01 120 chrX:16598536-16598656 4.66e-02 120 chr3L:18837716-18837836 4.20e-01 120 chr2R:24780806-24780926 9.45e-02 43_[+4(2.34e-05)]_69 chrX:11806382-11806502 8.45e-04 35_[+1(9.11e-05)]_28_[+4(1.39e-05)]_\ 41 chr2R:10437363-10437483 3.13e-04 6_[+4(1.39e-05)]_18_[+2(5.48e-05)]_\ 34_[+4(5.75e-05)]_38 chr3R:14308801-14308921 1.07e-01 66_[+3(4.95e-05)]_46 chr3R:19067966-19068086 4.36e-01 120 chrX:13568293-13568413 9.64e-01 120 chrX:16792049-16792169 1.69e-01 120 chr2L:1177601-1177721 3.47e-05 81_[+2(2.75e-05)]_31 chrX:10847098-10847218 1.42e-01 120 chrX:19605173-19605293 4.64e-01 120 chr2R:16180115-16180235 3.77e-01 120 chr2L:4965548-4965668 2.92e-01 120 chr2L:5325010-5325130 2.40e-04 25_[+2(2.75e-05)]_19_[+1(2.85e-05)]_\ 60 chrX:11340927-11341047 8.66e-04 100_[+4(1.39e-05)]_12 chr2L:5278502-5278622 7.24e-02 120 chr3R:10049067-10049187 1.27e-02 120 chr2L:18151893-18152013 8.91e-01 120 chrX:8412718-8412838 5.17e-01 120 chrX:6641768-6641888 9.32e-01 120 chr2R:16322129-16322249 3.70e-03 32_[+4(1.39e-05)]_80 chr3L:17433037-17433157 4.88e-01 120 chr3R:16154347-16154467 3.56e-01 120 chrX:11905381-11905501 1.06e-01 18_[+4(4.36e-05)]_94 chrX:1033211-1033331 1.91e-04 3_[+5(1.11e-05)]_3_[+2(2.75e-05)]_\ 68_[+2(7.37e-05)]_22 chr2R:7013009-7013129 3.83e-01 120 chr3L:3159585-3159705 1.97e-01 120 chr2L:3059292-3059412 1.93e-02 67_[+3(8.94e-05)]_45 chr2L:16881200-16881320 1.23e-01 110_[+3(9.86e-05)]_2 chr3L:3814665-3814785 7.30e-01 120 chr4:696008-696128 1.39e-02 45_[+3(2.70e-05)]_67 chr2R:19293138-19293258 6.95e-03 51_[+3(4.02e-05)]_61 chr2L:435541-435661 8.80e-01 120 chrX:1773608-1773728 1.36e-02 57_[+2(2.75e-05)]_38_[+2(2.75e-05)]_\ 9 chr2R:9251952-9252072 8.11e-04 18_[+1(4.15e-05)]_44_[+3(1.35e-05)]_\ 42 chr3L:15563563-15563683 4.27e-01 120 chrX:11137249-11137369 8.67e-04 17_[+1(7.80e-05)]_23_[+3(1.35e-05)]_\ 64 chrX:16695837-16695957 1.69e-02 7_[+3(7.63e-05)]_105 chrX:476480-476600 6.72e-03 111_[+1(5.97e-05)]_1 chr3L:8121706-8121826 1.28e-03 16_[+3(6.29e-05)]_27_[+2(2.75e-05)]_\ 61 chrX:7702721-7702841 6.04e-01 120 chr2R:21312292-21312412 4.06e-05 10_[+1(9.11e-05)]_60_[+2(2.75e-05)]_\ 22_[+3(1.35e-05)]_4 chrX:15313981-15314101 8.12e-01 120 chr3R:20634730-20634850 2.79e-03 33_[+2(2.75e-05)]_19_[+2(2.75e-05)]_\ 52 chrX:11136454-11136574 1.19e-03 72_[+5(3.79e-05)]_4_[+1(2.22e-05)]_\ 28 chr3L:9059903-9060023 3.22e-01 120 chr2R:21649118-21649238 8.86e-01 120 chr3R:15320565-15320685 7.98e-01 120 chrX:13779924-13780044 9.24e-01 120 chr3L:3209032-3209152 5.52e-03 27_[+3(4.02e-05)]_85 chrX:3173144-3173264 9.89e-01 120 chrX:11483378-11483498 6.55e-04 25_[+1(2.22e-05)]_87 chr2R:10838731-10838851 9.95e-04 49_[+4(4.36e-05)]_27_[+5(1.11e-05)]_\ 28 chr2R:6993977-6994097 6.86e-02 1_[+4(4.36e-05)]_111 chrX:1477008-1477128 7.93e-04 28_[+2(2.75e-05)]_17_[+4(2.34e-05)]_\ 59 chr3R:24753652-24753772 3.25e-01 120 chr3L:9729911-9730031 4.36e-02 34_[+4(1.39e-05)]_78 chrX:6678178-6678298 3.45e-03 20_[+2(2.75e-05)]_92 chr2L:5907008-5907128 3.62e-04 39_[+1(9.20e-06)]_46_[+3(2.70e-05)]_\ 19 chrX:11124852-11124972 4.20e-03 57_[+4(8.07e-05)]_23_[+3(2.70e-05)]_\ 24 chr2R:16291430-16291550 3.56e-04 33_[+3(2.70e-05)]_44_[+1(9.20e-06)]_\ 27 chr2L:21166592-21166712 3.74e-02 120 chr3L:3143431-3143551 7.93e-01 120 chr2L:10277498-10277618 2.80e-01 102_[+2(7.37e-05)]_10 chrX:13845896-13846016 2.19e-02 105_[+1(9.20e-06)]_7 chr3R:18167686-18167806 5.22e-03 47_[+5(6.72e-05)]_7_[+1(2.85e-05)]_\ 50 chr3R:8893160-8893280 7.05e-01 120 chr3R:5302089-5302209 9.80e-02 120 chr2R:24571669-24571789 4.67e-01 120 chr2R:11640076-11640196 5.90e-02 120 chrX:16073457-16073577 7.03e-03 58_[+2(2.75e-05)]_21_[+2(2.75e-05)]_\ 25 chr3R:30802933-30803053 1.49e-01 120 chr2L:4458798-4458918 2.18e-02 82_[+4(2.34e-05)]_30 chr2L:9890771-9890891 1.19e-01 59_[+2(5.48e-05)]_53 chr4:314793-314913 8.53e-01 120 chrX:9106604-9106724 7.56e-01 120 chrX:19748720-19748840 3.53e-01 120 chr3L:5751714-5751834 8.01e-03 120 chr2L:18572187-18572307 1.17e-01 120 chr3R:23927612-23927732 2.57e-01 120 chr2L:18119759-18119879 1.00e+00 120 chr3L:10698220-10698340 2.38e-03 35_[+1(4.15e-05)]_77 chrX:17860890-17861010 5.75e-02 103_[+5(9.10e-05)]_9 chrX:18101193-18101313 3.27e-01 120 chr2L:6527113-6527233 3.64e-01 120 chr2R:4744305-4744425 2.49e-01 20_[+3(6.29e-05)]_92 chr2R:14170407-14170527 5.70e-03 5_[+2(2.75e-05)]_[+5(2.24e-05)]_99 chr2R:9116515-9116635 2.51e-03 85_[+5(9.10e-05)]_4_[+1(7.80e-05)]_\ 15 chrX:4918734-4918854 2.00e-02 81_[+1(5.97e-05)]_31 chr2R:7489870-7489990 1.91e-01 120 chr3R:30151658-30151778 9.70e-01 120 chrX:8273814-8273934 1.47e-01 96_[+5(9.10e-05)]_16 chrX:7691496-7691616 5.97e-01 120 chr2L:3478044-3478164 1.10e-01 6_[+4(5.75e-05)]_106 chrX:17856848-17856968 6.83e-01 120 chr3L:14564585-14564705 1.28e-02 43_[+5(2.24e-05)]_69 chr2L:8437312-8437432 1.73e-05 12_[+5(3.79e-05)]_63_[+1(2.22e-05)]_\ 6_[+3(1.35e-05)]_15 chr3L:11113779-11113899 8.76e-01 120 chr2L:10278807-10278927 6.93e-02 72_[+2(5.48e-05)]_40 chrX:2073441-2073561 1.51e-02 13_[+4(2.34e-05)]_99 chrX:7323747-7323867 9.27e-02 120 chr3R:28587192-28587312 3.25e-01 120 chr3L:18667250-18667370 3.06e-03 112_[+3(1.35e-05)] chr3L:8338968-8339088 4.80e-03 44_[+1(9.20e-06)]_68 chr2L:12436317-12436437 1.18e-03 104_[+3(1.35e-05)]_8 chr2R:6652906-6653026 5.69e-03 10_[+1(2.22e-05)]_13_[+5(9.10e-05)]_\ 81 chr3L:19914885-19915005 1.30e-02 44_[+2(5.48e-05)]_68 chr2R:16772649-16772769 3.80e-04 9_[+3(2.70e-05)]_25_[+4(1.39e-05)]_\ 70 chr3R:25249260-25249380 1.04e-03 4_[+2(5.48e-05)]_80_[+1(4.15e-05)]_\ 20 chrX:10472683-10472803 1.40e-01 120 chr2L:3058288-3058408 2.83e-01 120 chrX:19704168-19704288 1.95e-01 81_[+4(4.36e-05)]_31 chr2R:8572695-8572815 5.91e-01 120 chr3R:5223355-5223475 6.75e-01 120 chrX:10786789-10786909 2.00e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n05.farnam.hpc.yale.internal ********************************************************************************