******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1603.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:10231653-10231773 1.0000 120 chr2L:23315170-23315290 1.0000 120 chr2R:4547344-4547464 1.0000 120 chr2L:22574479-22574599 1.0000 120 chr2R:1071885-1072005 1.0000 120 chr2R:1071329-1071449 1.0000 120 chr2R:4827348-4827468 1.0000 120 chr2L:10423293-10423413 1.0000 120 chr2L:10333220-10333340 1.0000 120 chr4:1234893-1235013 1.0000 120 chr3L:23096924-23097044 1.0000 120 chr2R:5980738-5980858 1.0000 120 chr2L:8134102-8134222 1.0000 120 chrX:9090071-9090191 1.0000 120 chr2R:2565385-2565505 1.0000 120 chr2R:4471554-4471674 1.0000 120 chrX:15934241-15934361 1.0000 120 chr2L:4442318-4442438 1.0000 120 chr2R:1441014-1441134 1.0000 120 chr2R:5258864-5258984 1.0000 120 chrX:18138384-18138504 1.0000 120 chr3L:25108869-25108989 1.0000 120 chrX:16361483-16361603 1.0000 120 chr3L:23580757-23580877 1.0000 120 chr2L:10439345-10439465 1.0000 120 chr3L:23150429-23150549 1.0000 120 chr2R:5260649-5260769 1.0000 120 chr3R:2858590-2858710 1.0000 120 chr2R:3500677-3500797 1.0000 120 chr2L:22579042-22579162 1.0000 120 chr3R:25049503-25049623 1.0000 120 chr2R:1527036-1527156 1.0000 120 chr2L:23313589-23313709 1.0000 120 chr2R:4225052-4225172 1.0000 120 chr4:610552-610672 1.0000 120 chr3L:27858278-27858398 1.0000 120 chr2L:10327935-10328055 1.0000 120 chrX:15785997-15786117 1.0000 120 chr3L:20001019-20001139 1.0000 120 chr2L:22550171-22550291 1.0000 120 chr2L:2979245-2979365 1.0000 120 chr2R:24029221-24029341 1.0000 120 chr3L:28012618-28012738 1.0000 120 chr3L:24927043-24927163 1.0000 120 chr2L:23065305-23065425 1.0000 120 chr2L:10419083-10419203 1.0000 120 chr3R:3843060-3843180 1.0000 120 chr2R:5088733-5088853 1.0000 120 chr4:129755-129875 1.0000 120 chrX:15849246-15849366 1.0000 120 chr3R:566832-566952 1.0000 120 chr2L:10269949-10270069 1.0000 120 chr2R:5416535-5416655 1.0000 120 chr4:958393-958513 1.0000 120 chr2L:10422730-10422850 1.0000 120 chr3L:26528416-26528536 1.0000 120 chr3L:27262106-27262226 1.0000 120 chr3L:3159961-3160081 1.0000 120 chr2R:4546594-4546714 1.0000 120 chr3R:4858644-4858764 1.0000 120 chr2R:5144605-5144725 1.0000 120 chr3R:3734099-3734219 1.0000 120 chr3L:27134324-27134444 1.0000 120 chr2R:5350651-5350771 1.0000 120 chr3R:3734819-3734939 1.0000 120 chr2R:4824301-4824421 1.0000 120 chr3L:27136399-27136519 1.0000 120 chr3L:23099534-23099654 1.0000 120 chr3R:3789749-3789869 1.0000 120 chr2R:2846663-2846783 1.0000 120 chr2L:10380006-10380126 1.0000 120 chr2L:10263525-10263645 1.0000 120 chr2L:18449193-18449313 1.0000 120 chr2R:1521285-1521405 1.0000 120 chr3L:23258653-23258773 1.0000 120 chr2R:4471045-4471165 1.0000 120 chrX:22444109-22444229 1.0000 120 chr2L:22758301-22758421 1.0000 120 chr4:959558-959678 1.0000 120 chr3R:22462020-22462140 1.0000 120 chr2R:4544695-4544815 1.0000 120 chr2R:8644813-8644933 1.0000 120 chr3R:3118007-3118127 1.0000 120 chr2R:4272506-4272626 1.0000 120 chr2L:2145120-2145240 1.0000 120 chr2R:4618294-4618414 1.0000 120 chr3L:23714916-23715036 1.0000 120 chr2R:5653578-5653698 1.0000 120 chr4:788484-788604 1.0000 120 chr3R:3750284-3750404 1.0000 120 chr2R:24099095-24099215 1.0000 120 chr2L:23068354-23068474 1.0000 120 chr2L:22981723-22981843 1.0000 120 chr3R:3621117-3621237 1.0000 120 chr3R:22745546-22745666 1.0000 120 chr3R:3623030-3623150 1.0000 120 chr2R:4616610-4616730 1.0000 120 chr2L:22538148-22538268 1.0000 120 chr3L:23583687-23583807 1.0000 120 chr2R:5090496-5090616 1.0000 120 chr4:1231770-1231890 1.0000 120 chr2L:23176134-23176254 1.0000 120 chr2L:23174362-23174482 1.0000 120 chr4:193832-193952 1.0000 120 chr2R:5251034-5251154 1.0000 120 chrX:11149310-11149430 1.0000 120 chr2L:10255851-10255971 1.0000 120 chr2L:10314783-10314903 1.0000 120 chr3L:24976126-24976246 1.0000 120 chr4:445209-445329 1.0000 120 chr3L:24537263-24537383 1.0000 120 chr2R:5371059-5371179 1.0000 120 chr2L:10264047-10264167 1.0000 120 chrX:19667548-19667668 1.0000 120 chr2R:4788638-4788758 1.0000 120 chr2R:4824807-4824927 1.0000 120 chr2R:4594394-4594514 1.0000 120 chrX:15933656-15933776 1.0000 120 chr2R:5013765-5013885 1.0000 120 chr2R:4130884-4131004 1.0000 120 chr2L:22567558-22567678 1.0000 120 chr2L:22578040-22578160 1.0000 120 chr2R:4013985-4014105 1.0000 120 chr3L:24231469-24231589 1.0000 120 chr3R:7080371-7080491 1.0000 120 chr3L:23279154-23279274 1.0000 120 chr2L:10312085-10312205 1.0000 120 chr2R:5663170-5663290 1.0000 120 chr2R:5652836-5652956 1.0000 120 chr2L:10239242-10239362 1.0000 120 chr3L:23339200-23339320 1.0000 120 chrX:11148550-11148670 1.0000 120 chr2L:5000977-5001097 1.0000 120 chr2L:10232395-10232515 1.0000 120 chr2L:22247819-22247939 1.0000 120 chrX:15996950-15997070 1.0000 120 chrX:20162706-20162826 1.0000 120 chr2R:12163041-12163161 1.0000 120 chr2R:5088287-5088407 1.0000 120 chr3R:3587067-3587187 1.0000 120 chr3L:24028386-24028506 1.0000 120 chr2R:20667282-20667402 1.0000 120 chr2R:5307156-5307276 1.0000 120 chr3R:2111116-2111236 1.0000 120 chr3L:23338092-23338212 1.0000 120 chr2R:4671737-4671857 1.0000 120 chr3R:21214960-21215080 1.0000 120 chr2R:1211524-1211644 1.0000 120 chr2R:5340955-5341075 1.0000 120 chr3L:24536107-24536227 1.0000 120 chr2R:5981220-5981340 1.0000 120 chr2R:4595202-4595322 1.0000 120 chr4:959765-959885 1.0000 120 chr3R:1688799-1688919 1.0000 120 chr3L:27083913-27084033 1.0000 120 chr4:904826-904946 1.0000 120 chr3R:3845875-3845995 1.0000 120 chr4:570783-570903 1.0000 120 chr2R:1264262-1264382 1.0000 120 chr2L:10314355-10314475 1.0000 120 chr2L:22737147-22737267 1.0000 120 chr2R:5663832-5663952 1.0000 120 chr2R:1345580-1345700 1.0000 120 chr2L:4444677-4444797 1.0000 120 chr3L:27265759-27265879 1.0000 120 chr2L:22239798-22239918 1.0000 120 chr3R:3103820-3103940 1.0000 120 chr4:207115-207235 1.0000 120 chr3R:3846660-3846780 1.0000 120 chr2L:22924711-22924831 1.0000 120 chr3L:26014157-26014277 1.0000 120 chr3L:27085078-27085198 1.0000 120 chr3L:25675668-25675788 1.0000 120 chr2L:889948-890068 1.0000 120 chr4:130684-130804 1.0000 120 chr2R:4728996-4729116 1.0000 120 chrX:928023-928143 1.0000 120 chr2R:5604833-5604953 1.0000 120 chrX:14832550-14832670 1.0000 120 chr4:314809-314929 1.0000 120 chr3L:27279202-27279322 1.0000 120 chr4:313907-314027 1.0000 120 chr3L:27859431-27859551 1.0000 120 chr3L:25120621-25120741 1.0000 120 chr2R:5354491-5354611 1.0000 120 chrX:20165916-20166036 1.0000 120 chr2R:3581953-3582073 1.0000 120 chr2R:5075052-5075172 1.0000 120 chr2R:5363123-5363243 1.0000 120 chr3L:23125887-23126007 1.0000 120 chr3R:30643398-30643518 1.0000 120 chr2L:22131315-22131435 1.0000 120 chr2R:4517325-4517445 1.0000 120 chr2R:5529354-5529474 1.0000 120 chr2R:20668009-20668129 1.0000 120 chrX:16005756-16005876 1.0000 120 chr2L:23075530-23075650 1.0000 120 chr4:44843-44963 1.0000 120 chr3L:26013666-26013786 1.0000 120 chr2R:24037796-24037916 1.0000 120 chr2R:5251898-5252018 1.0000 120 chr3L:27264608-27264728 1.0000 120 chrX:10367803-10367923 1.0000 120 chr2R:5671681-5671801 1.0000 120 chrX:15788769-15788889 1.0000 120 chrX:9295664-9295784 1.0000 120 chr2L:10265244-10265364 1.0000 120 chr2R:21897839-21897959 1.0000 120 chr2R:999990-1000110 1.0000 120 chr2L:10403967-10404087 1.0000 120 chr3R:3748696-3748816 1.0000 120 chr3L:25107921-25108041 1.0000 120 chr2R:4618891-4619011 1.0000 120 chrX:7286778-7286898 1.0000 120 chr3L:23686270-23686390 1.0000 120 chr3L:23097511-23097631 1.0000 120 chr2R:18094713-18094833 1.0000 120 chr3L:24020919-24021039 1.0000 120 chr3L:23738534-23738654 1.0000 120 chr2L:22121076-22121196 1.0000 120 chr2L:22570197-22570317 1.0000 120 chr2L:11394235-11394355 1.0000 120 chr2R:4783287-4783407 1.0000 120 chr2R:1590424-1590544 1.0000 120 chr2R:4744277-4744397 1.0000 120 chr3L:12734822-12734942 1.0000 120 chr4:181765-181885 1.0000 120 chr2L:10277535-10277655 1.0000 120 chr3L:23250752-23250872 1.0000 120 chr2R:20976949-20977069 1.0000 120 chr2L:7827687-7827807 1.0000 120 chr4:1260497-1260617 1.0000 120 chr3R:1212679-1212799 1.0000 120 chr2L:10372461-10372581 1.0000 120 chr2R:4188155-4188275 1.0000 120 chrX:2050709-2050829 1.0000 120 chr2R:23003234-23003354 1.0000 120 chr3R:31696797-31696917 1.0000 120 chr4:1196827-1196947 1.0000 120 chr3L:12734592-12734712 1.0000 120 chr4:787599-787719 1.0000 120 chr2L:13021283-13021403 1.0000 120 chr2L:22249830-22249950 1.0000 120 chr2L:10362926-10363046 1.0000 120 chr2L:4818211-4818331 1.0000 120 chr4:1148063-1148183 1.0000 120 chr3R:19648382-19648502 1.0000 120 chr2R:23187301-23187421 1.0000 120 chr2R:9200861-9200981 1.0000 120 chr3L:16139247-16139367 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG1603/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1603.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.316 C 0.186 G 0.188 T 0.31 Background letter frequencies (from file dataset with add-one prior applied): A 0.316 C 0.186 G 0.188 T 0.31 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-1 width = 8 sites = 53 llr = 440 E-value = 3.3e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2a:::a37 pos.-specific C 2::a:::: probability G ::::a::: matrix T 6:a:::73 bits 2.4 ** 2.2 ** 1.9 ** 1.7 ***** Relative 1.5 ***** Entropy 1.2 ***** (12.0 bits) 1.0 ***** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus C AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16139247-16139367 86 3.29e-05 TGCAATTGGT TATCGATA ACTTCAGTTT chr4:787599-787719 47 3.29e-05 TAACAATTAT TATCGATA TACTTTCACG chr4:1196827-1196947 23 3.29e-05 TGAAATACCT TATCGATA AATTCAGATA chr3L:12734822-12734942 96 3.29e-05 TCGACTGACT TATCGATA ACGCCGCATA chr2R:20668009-20668129 85 3.29e-05 TTACTCACAC TATCGATA CACCAACGTG chr2R:5354491-5354611 7 3.29e-05 TCGCGA TATCGATA ACTATGAAGA chr4:130684-130804 111 3.29e-05 gttttttaaa tatcgata ga chr3L:24536107-24536227 72 3.29e-05 CAATTAATTC TATCGATA TTAGTGTCAC chr2L:10232395-10232515 83 3.29e-05 ATGGCGTAGA TATCGATA TACCTGCATT chr3L:23279154-23279274 41 3.29e-05 ttttctggga tatcgata gatatcgggg chr3L:24231469-24231589 90 3.29e-05 CTCCTGATCC TATCGATA GTTTCCTGCA chr4:1231770-1231890 85 3.29e-05 CCATCGAAGT TATCGATA GTTCCATCGA chr3R:22462020-22462140 24 3.29e-05 ACCCCAAAAT TATCGATA AATTATACCG chr2L:10380006-10380126 84 3.29e-05 TGACACAAGT TATCGATA ATTCTACATA chr3R:3734099-3734219 95 3.29e-05 CTCCTCATCC TATCGATA GTTTCTGCAG chr2R:5144605-5144725 16 3.29e-05 TACTTTTTTA TATCGATA TTTCTTAGGA chr3L:27858278-27858398 5 3.29e-05 TCGT TATCGATA TTTATTTCGG chr2L:10439345-10439465 67 3.29e-05 CCAAACAAAT TATCGATA TACAGCTGCT chrX:18138384-18138504 76 3.29e-05 ATCGATACCT TATCGATA CTGTATCGGT chr2L:10277535-10277655 66 5.26e-05 GAAACGTATA CATCGATA AGAGCCATCG chrX:20165916-20166036 16 5.26e-05 TGGGACGATA CATCGATA GATTCGAGAA chr2L:10314783-10314903 31 5.26e-05 CCACCATAAA CATCGATA AAACAGCTGA chr2R:1521285-1521405 52 5.26e-05 tcaacaAAGT CATCGATA GCGTTACAAT chr2L:4442318-4442438 30 5.26e-05 GATAAAATGC CATCGATA TATTTCTGGT chr3L:23250752-23250872 41 8.48e-05 ACAAAGAATT TATCGATT AATCGAAGTT chr2R:4013985-4014105 106 8.48e-05 AGTTTTACAT TATCGATT GCGGCTG chr3L:23583687-23583807 24 8.48e-05 tatacagaat tatcgatt gtcggatgcg chr2L:10419083-10419203 92 8.48e-05 TTCATCGAGC TATCGATT TTTACCGGTA chr3L:20001019-20001139 64 8.48e-05 TTGTAGGCGA TATCGATT TTTGTTTTAT chr2R:5980738-5980858 33 8.48e-05 TCTATTCTGA TATCGATT AATTTTTTTG chr2L:22239798-22239918 7 1.18e-04 GAGAAT TATCGAAA AATGACTTCG chr4:570783-570903 11 1.18e-04 ATCCAAAAAA TATCGAAA ATTACTTTAA chr2R:5340955-5341075 12 1.38e-04 GGAAACGACC CATCGATT TCAATTTATA chr2R:20976949-20977069 57 1.58e-04 GCAATGGTCA CATCGAAA TGTTGTGTTG chrX:16005756-16005876 35 1.58e-04 CGTAGTGAAT CATCGAAA TATACCACAC chr3L:23339200-23339320 106 1.58e-04 TCGCTGTTGG CATCGAAA TATGTCC chr3R:3750284-3750404 62 1.58e-04 TCTTGACGCA CATCGAAA TTTACAAAGT chr3R:3843060-3843180 38 1.58e-04 TGCaaaacaa catcgaaa gatgcaaccc chr2R:2565385-2565505 71 1.58e-04 GAATATGGAA CATCGAAA AAAGAATCGA chr3R:1212679-1212799 5 1.91e-04 acaa aatcgata aaatcgaata chr2L:7827687-7827807 66 1.91e-04 ATGCATCGCT AATCGATA CACACACACA chr3L:23686270-23686390 81 1.91e-04 CGCATCCGAC AATCGATA ATTCTGTATA chr2R:4272506-4272626 61 1.91e-04 ctcgataaat aatcgata gggggcttac chr3R:3748696-3748816 44 2.24e-04 TATTAGTGGA TATCGAAT ATTGTTTAAG chr3L:27085078-27085198 88 2.24e-04 tagagtagag tatcgaat gtatgtaaca chr2R:5663170-5663290 74 2.24e-04 TATATTAAAA TATCGAAT ACGTTATCTA chrX:19667548-19667668 100 2.24e-04 GGGCAATTGG TATCGAAT TGGATTCCAC chr2L:10231653-10231773 2 2.24e-04 C TATCGAAT AGTCGAAGTG chr2L:22924711-22924831 54 2.44e-04 ACAGCTATAA CATCGAAT AATAAGACCG chr2L:22121076-22121196 112 2.77e-04 CGAAGGATAC AATCGATT A chr2L:10403967-10404087 40 2.77e-04 TTCGTGAAGT AATCGATT AATACAGCGA chr3L:25108869-25108989 73 2.77e-04 TTATTTACGA AATCGATT TCATAATTAT chr4:959558-959678 46 3.11e-04 CAATCTTTAA AATCGAAA TCGTAAAGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16139247-16139367 3.3e-05 85_[+1]_27 chr4:787599-787719 3.3e-05 46_[+1]_66 chr4:1196827-1196947 3.3e-05 22_[+1]_90 chr3L:12734822-12734942 3.3e-05 95_[+1]_17 chr2R:20668009-20668129 3.3e-05 84_[+1]_28 chr2R:5354491-5354611 3.3e-05 6_[+1]_106 chr4:130684-130804 3.3e-05 110_[+1]_2 chr3L:24536107-24536227 3.3e-05 71_[+1]_41 chr2L:10232395-10232515 3.3e-05 82_[+1]_30 chr3L:23279154-23279274 3.3e-05 40_[+1]_72 chr3L:24231469-24231589 3.3e-05 89_[+1]_23 chr4:1231770-1231890 3.3e-05 84_[+1]_28 chr3R:22462020-22462140 3.3e-05 23_[+1]_89 chr2L:10380006-10380126 3.3e-05 83_[+1]_29 chr3R:3734099-3734219 3.3e-05 94_[+1]_18 chr2R:5144605-5144725 3.3e-05 15_[+1]_97 chr3L:27858278-27858398 3.3e-05 4_[+1]_108 chr2L:10439345-10439465 3.3e-05 66_[+1]_46 chrX:18138384-18138504 3.3e-05 75_[+1]_37 chr2L:10277535-10277655 5.3e-05 65_[+1]_47 chrX:20165916-20166036 5.3e-05 15_[+1]_97 chr2L:10314783-10314903 5.3e-05 30_[+1]_82 chr2R:1521285-1521405 5.3e-05 51_[+1]_61 chr2L:4442318-4442438 5.3e-05 29_[+1]_83 chr3L:23250752-23250872 8.5e-05 40_[+1]_72 chr2R:4013985-4014105 8.5e-05 105_[+1]_7 chr3L:23583687-23583807 8.5e-05 23_[+1]_89 chr2L:10419083-10419203 8.5e-05 91_[+1]_21 chr3L:20001019-20001139 8.5e-05 63_[+1]_49 chr2R:5980738-5980858 8.5e-05 32_[+1]_80 chr2L:22239798-22239918 0.00012 6_[+1]_106 chr4:570783-570903 0.00012 10_[+1]_102 chr2R:5340955-5341075 0.00014 11_[+1]_101 chr2R:20976949-20977069 0.00016 56_[+1]_56 chrX:16005756-16005876 0.00016 34_[+1]_78 chr3L:23339200-23339320 0.00016 105_[+1]_7 chr3R:3750284-3750404 0.00016 61_[+1]_51 chr3R:3843060-3843180 0.00016 37_[+1]_75 chr2R:2565385-2565505 0.00016 70_[+1]_42 chr3R:1212679-1212799 0.00019 4_[+1]_108 chr2L:7827687-7827807 0.00019 65_[+1]_47 chr3L:23686270-23686390 0.00019 80_[+1]_32 chr2R:4272506-4272626 0.00019 60_[+1]_52 chr3R:3748696-3748816 0.00022 43_[+1]_69 chr3L:27085078-27085198 0.00022 87_[+1]_25 chr2R:5663170-5663290 0.00022 73_[+1]_39 chrX:19667548-19667668 0.00022 99_[+1]_13 chr2L:10231653-10231773 0.00022 1_[+1]_111 chr2L:22924711-22924831 0.00024 53_[+1]_59 chr2L:22121076-22121196 0.00028 111_[+1]_1 chr2L:10403967-10404087 0.00028 39_[+1]_73 chr3L:25108869-25108989 0.00028 72_[+1]_40 chr4:959558-959678 0.00031 45_[+1]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=53 chr3L:16139247-16139367 ( 86) TATCGATA 1 chr4:787599-787719 ( 47) TATCGATA 1 chr4:1196827-1196947 ( 23) TATCGATA 1 chr3L:12734822-12734942 ( 96) TATCGATA 1 chr2R:20668009-20668129 ( 85) TATCGATA 1 chr2R:5354491-5354611 ( 7) TATCGATA 1 chr4:130684-130804 ( 111) TATCGATA 1 chr3L:24536107-24536227 ( 72) TATCGATA 1 chr2L:10232395-10232515 ( 83) TATCGATA 1 chr3L:23279154-23279274 ( 41) TATCGATA 1 chr3L:24231469-24231589 ( 90) TATCGATA 1 chr4:1231770-1231890 ( 85) TATCGATA 1 chr3R:22462020-22462140 ( 24) TATCGATA 1 chr2L:10380006-10380126 ( 84) TATCGATA 1 chr3R:3734099-3734219 ( 95) TATCGATA 1 chr2R:5144605-5144725 ( 16) TATCGATA 1 chr3L:27858278-27858398 ( 5) TATCGATA 1 chr2L:10439345-10439465 ( 67) TATCGATA 1 chrX:18138384-18138504 ( 76) TATCGATA 1 chr2L:10277535-10277655 ( 66) CATCGATA 1 chrX:20165916-20166036 ( 16) CATCGATA 1 chr2L:10314783-10314903 ( 31) CATCGATA 1 chr2R:1521285-1521405 ( 52) CATCGATA 1 chr2L:4442318-4442438 ( 30) CATCGATA 1 chr3L:23250752-23250872 ( 41) TATCGATT 1 chr2R:4013985-4014105 ( 106) TATCGATT 1 chr3L:23583687-23583807 ( 24) TATCGATT 1 chr2L:10419083-10419203 ( 92) TATCGATT 1 chr3L:20001019-20001139 ( 64) TATCGATT 1 chr2R:5980738-5980858 ( 33) TATCGATT 1 chr2L:22239798-22239918 ( 7) TATCGAAA 1 chr4:570783-570903 ( 11) TATCGAAA 1 chr2R:5340955-5341075 ( 12) CATCGATT 1 chr2R:20976949-20977069 ( 57) CATCGAAA 1 chrX:16005756-16005876 ( 35) CATCGAAA 1 chr3L:23339200-23339320 ( 106) CATCGAAA 1 chr3R:3750284-3750404 ( 62) CATCGAAA 1 chr3R:3843060-3843180 ( 38) CATCGAAA 1 chr2R:2565385-2565505 ( 71) CATCGAAA 1 chr3R:1212679-1212799 ( 5) AATCGATA 1 chr2L:7827687-7827807 ( 66) AATCGATA 1 chr3L:23686270-23686390 ( 81) AATCGATA 1 chr2R:4272506-4272626 ( 61) AATCGATA 1 chr3R:3748696-3748816 ( 44) TATCGAAT 1 chr3L:27085078-27085198 ( 88) TATCGAAT 1 chr2R:5663170-5663290 ( 74) TATCGAAT 1 chrX:19667548-19667668 ( 100) TATCGAAT 1 chr2L:10231653-10231773 ( 2) TATCGAAT 1 chr2L:22924711-22924831 ( 54) CATCGAAT 1 chr2L:22121076-22121196 ( 112) AATCGATT 1 chr2L:10403967-10404087 ( 40) AATCGATT 1 chr3L:25108869-25108989 ( 73) AATCGATT 1 chr4:959558-959678 ( 46) AATCGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2363 E= 3.3e-009 -107 40 -1237 96 166 -1237 -1237 -1237 -1237 -1237 -1237 169 -1237 243 -1237 -1237 -1237 -1237 241 -1237 166 -1237 -1237 -1237 -16 -1237 -1237 121 114 -1237 -1237 -4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 3.3e-009 0.150943 0.245283 0.000000 0.603774 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.283019 0.000000 0.000000 0.716981 0.698113 0.000000 0.000000 0.301887 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 regular expression -------------------------------------------------------------------------------- [TC]ATCGA[TA][AT] -------------------------------------------------------------------------------- Time 7.38 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTCACAC MEME-2 width = 8 sites = 20 llr = 200 E-value = 6.0e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::3:a:a: pos.-specific C ::2a:a:a probability G 7a:::::: matrix T 316::::: bits 2.4 * * * 2.2 * * * * 1.9 * * * * 1.7 * ***** Relative 1.5 * ***** Entropy 1.2 ** ***** (14.5 bits) 1.0 ** ***** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGTCACAC consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:4818211-4818331 84 7.04e-06 ATAAACTAAT GGTCACAC TTTTATTTGG chrX:15788769-15788889 89 7.04e-06 GCCGTGCGAC GGTCACAC TGGATCTGAA chr2R:5671681-5671801 88 7.04e-06 TGAGTGCGAC GGTCACAC TTTAGGGCGT chrX:14832550-14832670 75 7.04e-06 GACGGCGCCT GGTCACAC AGCACCGATT chrX:928023-928143 109 7.04e-06 GAAAATACGT GGTCACAC TGTA chr2R:20667282-20667402 22 7.04e-06 GCGGCAATAC GGTCACAC CTAGCGGTGC chr3R:22745546-22745666 95 7.04e-06 GTCAGCAAAC GGTCACAC TGGCACTAGT chr3R:3118007-3118127 60 7.04e-06 cagtcagctg ggtcacac caatgtaaag chrX:15785997-15786117 73 7.04e-06 TCCAGCGTGC GGTCACAC TGCAGCAATG chr2L:22249830-22249950 68 1.13e-05 GAAATTCTAT GGCCACAC TGATTATTGG chr2L:10372461-10372581 99 1.13e-05 GCAGCTGATT GGCCACAC AGGTGGCAAA chrX:15996950-15997070 84 1.13e-05 TTGTCAATAC GGCCACAC TGTTGGCAAC chr2R:1345580-1345700 38 1.84e-05 acatcgacta ggacacac aagcataccc chrX:19667548-19667668 4 3.00e-05 AGT TGTCACAC TTTTGCTTTT chr3L:23258653-23258773 22 3.00e-05 TTAGTGCGAA Tgtcacac aagcggactt chr2R:4618891-4619011 78 4.88e-05 GACGCTATCT TGACACAC ACTTTAATTG chr2L:10314783-10314903 4 4.88e-05 GAT TGACACAC ACATTTCAAC chr2R:4272506-4272626 88 4.88e-05 cggtcagctg tgacacac caatttaagg chrX:22444109-22444229 65 4.88e-05 GATGCTAATT TGACACAC ATATATGATG chr4:788484-788604 105 6.05e-05 TGTCCGATCC GTTCACAC TGGTAACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:4818211-4818331 7e-06 83_[+2]_29 chrX:15788769-15788889 7e-06 88_[+2]_24 chr2R:5671681-5671801 7e-06 87_[+2]_25 chrX:14832550-14832670 7e-06 74_[+2]_38 chrX:928023-928143 7e-06 108_[+2]_4 chr2R:20667282-20667402 7e-06 21_[+2]_91 chr3R:22745546-22745666 7e-06 94_[+2]_18 chr3R:3118007-3118127 7e-06 59_[+2]_53 chrX:15785997-15786117 7e-06 72_[+2]_40 chr2L:22249830-22249950 1.1e-05 67_[+2]_45 chr2L:10372461-10372581 1.1e-05 98_[+2]_14 chrX:15996950-15997070 1.1e-05 83_[+2]_29 chr2R:1345580-1345700 1.8e-05 37_[+2]_75 chrX:19667548-19667668 3e-05 3_[+2]_109 chr3L:23258653-23258773 3e-05 21_[+2]_91 chr2R:4618891-4619011 4.9e-05 77_[+2]_35 chr2L:10314783-10314903 4.9e-05 3_[+2]_109 chr2R:4272506-4272626 4.9e-05 87_[+2]_25 chrX:22444109-22444229 4.9e-05 64_[+2]_48 chr4:788484-788604 6e-05 104_[+2]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTCACAC width=8 seqs=20 chr2L:4818211-4818331 ( 84) GGTCACAC 1 chrX:15788769-15788889 ( 89) GGTCACAC 1 chr2R:5671681-5671801 ( 88) GGTCACAC 1 chrX:14832550-14832670 ( 75) GGTCACAC 1 chrX:928023-928143 ( 109) GGTCACAC 1 chr2R:20667282-20667402 ( 22) GGTCACAC 1 chr3R:22745546-22745666 ( 95) GGTCACAC 1 chr3R:3118007-3118127 ( 60) GGTCACAC 1 chrX:15785997-15786117 ( 73) GGTCACAC 1 chr2L:22249830-22249950 ( 68) GGCCACAC 1 chr2L:10372461-10372581 ( 99) GGCCACAC 1 chrX:15996950-15997070 ( 84) GGCCACAC 1 chr2R:1345580-1345700 ( 38) GGACACAC 1 chrX:19667548-19667668 ( 4) TGTCACAC 1 chr3L:23258653-23258773 ( 22) TGTCACAC 1 chr2R:4618891-4619011 ( 78) TGACACAC 1 chr2L:10314783-10314903 ( 4) TGACACAC 1 chr2R:4272506-4272626 ( 88) TGACACAC 1 chrX:22444109-22444229 ( 65) TGACACAC 1 chr4:788484-788604 ( 105) GTTCACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4069 E= 6.0e-003 -1097 -1097 190 -5 -1097 -1097 234 -263 -34 -31 -1097 95 -1097 243 -1097 -1097 166 -1097 -1097 -1097 -1097 243 -1097 -1097 166 -1097 -1097 -1097 -1097 243 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 6.0e-003 0.000000 0.000000 0.700000 0.300000 0.000000 0.000000 0.950000 0.050000 0.250000 0.150000 0.000000 0.600000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTCACAC MEME-2 regular expression -------------------------------------------------------------------------------- [GT]G[TA]CACAC -------------------------------------------------------------------------------- Time 13.53 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGACC MEME-3 width = 8 sites = 21 llr = 204 E-value = 4.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::1::a2: pos.-specific C ::::1:8a probability G a:9:8::: matrix T :a:a1::: bits 2.4 2.2 * * 1.9 * * * 1.7 * ** *** Relative 1.5 ******** Entropy 1.2 ******** (14.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:20976949-20977069 94 6.98e-06 CAAACCTGCA GTGTGACC GCAGCATTGC chrX:11148550-11148670 57 6.98e-06 TTATCGGCCA GTGTGACC GTGCGAGCAT chr2L:10312085-10312205 14 6.98e-06 GACAATTTGG GTGTGACC TTATTGCTGT chrX:15933656-15933776 14 6.98e-06 AAACAAACAA GTGTGACC AAGGCATCCA chr3R:22745546-22745666 30 6.98e-06 GCGCGTGCGA GTGTGACC GTTTTCTATG chr2L:2145120-2145240 40 6.98e-06 AGTTCCGCCA GTGTGACC GTACTGCTGC chr3R:22462020-22462140 9 6.98e-06 TACTACCA GTGTGACC CCAAAATTAT chr2R:4471045-4471165 10 6.98e-06 CCTCATCTA GTGTGACC GTGGATGGCG chr4:1148063-1148183 83 1.88e-05 cccgttacta gtgtgaac gcgaactcga chrX:16005756-16005876 18 1.88e-05 ATTGTGCGCA GTGTGAAC GTAGTGAATC chr3L:26014157-26014277 12 1.88e-05 CGTAGACACA GTGTGAAC AGACTCTAAT chr2L:22550171-22550291 61 1.88e-05 TGTTTCACAA GTGTGAAC AGGCCTTAAA chr3L:24536107-24536227 83 2.57e-05 ATCGATATTA GTGTCACC TAGTATTTTA chrX:16361483-16361603 72 2.57e-05 AGTAGGCATT GTGTCACC ACCTATGCTG chr3L:23279154-23279274 97 2.99e-05 taaagtgtga gcgtgacc gtttcaggcg chr2L:13021283-13021403 18 4.14e-05 GGCTTTCTCA GTGTTACC GTACCGACAA chr2L:10327935-10328055 22 4.14e-05 GTCATTATTA GTGTTACC GTGCGACATG chr2R:5350651-5350771 64 5.32e-05 CGTAGTGGAT GTATGACC AATGCAATTT chr2L:10333220-10333340 17 5.32e-05 AAGATTCTAA GTATGACC TTATTATATT chrX:2050709-2050829 47 6.71e-05 GCATTAGGAA CTGTGACC TGGTAATAAA chr3L:23150429-23150549 32 6.71e-05 AGTGGAACAT GTGTGACG TTACGGGTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:20976949-20977069 7e-06 93_[+3]_19 chrX:11148550-11148670 7e-06 56_[+3]_56 chr2L:10312085-10312205 7e-06 13_[+3]_99 chrX:15933656-15933776 7e-06 13_[+3]_99 chr3R:22745546-22745666 7e-06 29_[+3]_83 chr2L:2145120-2145240 7e-06 39_[+3]_73 chr3R:22462020-22462140 7e-06 8_[+3]_104 chr2R:4471045-4471165 7e-06 9_[+3]_103 chr4:1148063-1148183 1.9e-05 82_[+3]_30 chrX:16005756-16005876 1.9e-05 17_[+3]_95 chr3L:26014157-26014277 1.9e-05 11_[+3]_101 chr2L:22550171-22550291 1.9e-05 60_[+3]_52 chr3L:24536107-24536227 2.6e-05 82_[+3]_30 chrX:16361483-16361603 2.6e-05 71_[+3]_41 chr3L:23279154-23279274 3e-05 96_[+3]_16 chr2L:13021283-13021403 4.1e-05 17_[+3]_95 chr2L:10327935-10328055 4.1e-05 21_[+3]_91 chr2R:5350651-5350771 5.3e-05 63_[+3]_49 chr2L:10333220-10333340 5.3e-05 16_[+3]_96 chrX:2050709-2050829 6.7e-05 46_[+3]_66 chr3L:23150429-23150549 6.7e-05 31_[+3]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGACC width=8 seqs=21 chr2R:20976949-20977069 ( 94) GTGTGACC 1 chrX:11148550-11148670 ( 57) GTGTGACC 1 chr2L:10312085-10312205 ( 14) GTGTGACC 1 chrX:15933656-15933776 ( 14) GTGTGACC 1 chr3R:22745546-22745666 ( 30) GTGTGACC 1 chr2L:2145120-2145240 ( 40) GTGTGACC 1 chr3R:22462020-22462140 ( 9) GTGTGACC 1 chr2R:4471045-4471165 ( 10) GTGTGACC 1 chr4:1148063-1148183 ( 83) GTGTGAAC 1 chrX:16005756-16005876 ( 18) GTGTGAAC 1 chr3L:26014157-26014277 ( 12) GTGTGAAC 1 chr2L:22550171-22550291 ( 61) GTGTGAAC 1 chr3L:24536107-24536227 ( 83) GTGTCACC 1 chrX:16361483-16361603 ( 72) GTGTCACC 1 chr3L:23279154-23279274 ( 97) GCGTGACC 1 chr2L:13021283-13021403 ( 18) GTGTTACC 1 chr2L:10327935-10328055 ( 22) GTGTTACC 1 chr2R:5350651-5350771 ( 64) GTATGACC 1 chr2L:10333220-10333340 ( 17) GTATGACC 1 chrX:2050709-2050829 ( 47) CTGTGACC 1 chr3L:23150429-23150549 ( 32) GTGTGACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3794 E= 4.4e-002 -1104 -196 234 -1104 -1104 -196 -1104 162 -173 -1104 227 -1104 -1104 -1104 -1104 169 -1104 -96 211 -170 166 -1104 -1104 -1104 -73 212 -1104 -1104 -1104 236 -198 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 4.4e-002 0.000000 0.047619 0.952381 0.000000 0.000000 0.047619 0.000000 0.952381 0.095238 0.000000 0.904762 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.095238 0.809524 0.095238 1.000000 0.000000 0.000000 0.000000 0.190476 0.809524 0.000000 0.000000 0.000000 0.952381 0.047619 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 regular expression -------------------------------------------------------------------------------- GTGTGACC -------------------------------------------------------------------------------- Time 19.63 secs. ******************************************************************************** ******************************************************************************** MOTIF GTCAAGAT MEME-4 width = 8 sites = 18 llr = 182 E-value = 2.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTCAAGAT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::aa:7: pos.-specific C ::a::::: probability G a::::a2: matrix T :a::::1a bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 ****** * Relative 1.5 ****** * Entropy 1.2 ****** * (14.6 bits) 1.0 ****** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTCAAGAT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAAGAT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:23097511-23097631 15 1.99e-05 ATTCTTAATC GTCAAGAT CGTAATTTTT chrX:16005756-16005876 81 1.99e-05 ATGTATGTGC GTCAAGAT AGCGCCAGAG chr2R:12163041-12163161 62 1.99e-05 GTAAAAAGCA GTCAAGAT AACCACACAA chr2L:5000977-5001097 15 1.99e-05 TAAACAAATT GTCAAGAT GTTGGGTTAA chr3R:7080371-7080491 51 1.99e-05 AACGGTGTGC GTCAAGAT AACGACGACA chrX:19667548-19667668 48 1.99e-05 TCACATTCGG GTCAAGAT GGCAACGCAA chr2L:10255851-10255971 45 1.99e-05 ATATATGCCC GTCAAGAT AGCGTCAATT chr2R:5251034-5251154 23 1.99e-05 TTAATTGTTT GTCAAGAT AGCATATAAG chr2R:4824301-4824421 68 1.99e-05 AATTCACGCC GTCAAGAT ATCGTCGATG chrX:15849246-15849366 76 1.99e-05 GCTTACGCGC GTCAAGAT AGCGACGACG chr2L:2979245-2979365 65 1.99e-05 TGTGCGTCGG GTCAAGAT AGCGCCGTAA chr2L:23313589-23313709 74 1.99e-05 AAAACTGTGC GTCAAGAT AGCATCACTC chrX:9090071-9090191 81 1.99e-05 GCCTGCCATT GTCAAGAT AGCATTCTTG chr3R:19648382-19648502 28 3.18e-05 GTTTTTGGCA GTCAAGGT AGTGGGGCGG chr2L:10312085-10312205 51 3.18e-05 TCTTGCCCCT GTCAAGGT AACGCCGACA chr3R:3118007-3118127 11 3.18e-05 gaacataaag gtcaaggt atgtttcata chrX:20165916-20166036 77 5.14e-05 TGTTATGTGC GTCAAGTT AGCGTCGATG chrX:928023-928143 58 5.14e-05 ATGAATTTGC GTCAAGTT GGCGTCGGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAAGAT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:23097511-23097631 2e-05 14_[+4]_98 chrX:16005756-16005876 2e-05 80_[+4]_32 chr2R:12163041-12163161 2e-05 61_[+4]_51 chr2L:5000977-5001097 2e-05 14_[+4]_98 chr3R:7080371-7080491 2e-05 50_[+4]_62 chrX:19667548-19667668 2e-05 47_[+4]_65 chr2L:10255851-10255971 2e-05 44_[+4]_68 chr2R:5251034-5251154 2e-05 22_[+4]_90 chr2R:4824301-4824421 2e-05 67_[+4]_45 chrX:15849246-15849366 2e-05 75_[+4]_37 chr2L:2979245-2979365 2e-05 64_[+4]_48 chr2L:23313589-23313709 2e-05 73_[+4]_39 chrX:9090071-9090191 2e-05 80_[+4]_32 chr3R:19648382-19648502 3.2e-05 27_[+4]_85 chr2L:10312085-10312205 3.2e-05 50_[+4]_62 chr3R:3118007-3118127 3.2e-05 10_[+4]_102 chrX:20165916-20166036 5.1e-05 76_[+4]_36 chrX:928023-928143 5.1e-05 57_[+4]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAAGAT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTCAAGAT width=8 seqs=18 chr3L:23097511-23097631 ( 15) GTCAAGAT 1 chrX:16005756-16005876 ( 81) GTCAAGAT 1 chr2R:12163041-12163161 ( 62) GTCAAGAT 1 chr2L:5000977-5001097 ( 15) GTCAAGAT 1 chr3R:7080371-7080491 ( 51) GTCAAGAT 1 chrX:19667548-19667668 ( 48) GTCAAGAT 1 chr2L:10255851-10255971 ( 45) GTCAAGAT 1 chr2R:5251034-5251154 ( 23) GTCAAGAT 1 chr2R:4824301-4824421 ( 68) GTCAAGAT 1 chrX:15849246-15849366 ( 76) GTCAAGAT 1 chr2L:2979245-2979365 ( 65) GTCAAGAT 1 chr2L:23313589-23313709 ( 74) GTCAAGAT 1 chrX:9090071-9090191 ( 81) GTCAAGAT 1 chr3R:19648382-19648502 ( 28) GTCAAGGT 1 chr2L:10312085-10312205 ( 51) GTCAAGGT 1 chr3R:3118007-3118127 ( 11) GTCAAGGT 1 chrX:20165916-20166036 ( 77) GTCAAGTT 1 chrX:928023-928143 ( 58) GTCAAGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAAGAT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7495 E= 2.9e-001 -1081 -1081 241 -1081 -1081 -1081 -1081 169 -1081 243 -1081 -1081 166 -1081 -1081 -1081 166 -1081 -1081 -1081 -1081 -1081 241 -1081 119 -1081 -17 -148 -1081 -1081 -1081 169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAAGAT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 2.9e-001 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.722222 0.000000 0.166667 0.111111 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTCAAGAT MEME-4 regular expression -------------------------------------------------------------------------------- GTCAAGAT -------------------------------------------------------------------------------- Time 25.70 secs. ******************************************************************************** ******************************************************************************** MOTIF CRTGTTCC MEME-5 width = 8 sites = 20 llr = 191 E-value = 3.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRTGTTCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 14:::::1 pos.-specific C 9:::::a9 probability G :7:7:::: matrix T ::a3aa:: bits 2.4 * 2.2 * 1.9 * ** 1.7 * * **** Relative 1.5 * * **** Entropy 1.2 ******** (13.8 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGTGTTCC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRTGTTCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:3103820-3103940 55 6.78e-06 tttatttcaa cgtgttcc taattccaag chr2R:24099095-24099215 14 6.78e-06 TGGCCCTCTT CGTGTTCC ATTCCATCAC chrX:22444109-22444229 12 6.78e-06 TAACAGCCCT CGTGTTCC AAACTCCACC chr2R:24029221-24029341 36 6.78e-06 TCCGATTCCG CGTGTTCC AATCGGAATG chr2R:4225052-4225172 56 6.78e-06 tttatttcac cgtgttcc tcattccaag chr4:181765-181885 26 1.82e-05 AATGTCTTTG CATGTTCC GCTTCTTACG chr3R:1688799-1688919 12 1.82e-05 gattatttcc catgttcc tagcgaggtc chr4:959765-959885 41 1.82e-05 AAAATGACAT CATGTTCC ACACAATGTC chr2R:4130884-4131004 36 1.82e-05 TATATATTGT CATGTTCC TTACCGCCCG chr2L:23065305-23065425 11 1.82e-05 atttttggga catgttcc aaatacagac chr2R:5981220-5981340 72 2.93e-05 TAAGAAATAT CGTTTTCC TGTTGTGTGA chr2L:23174362-23174482 34 2.93e-05 CTCAATGGTC CGTTTTCC AGCACTTACT chr4:129755-129875 32 2.93e-05 CTTTTTATAT CGTTTTCC TACCATATCA chr3L:23580757-23580877 87 2.93e-05 TTCAAAATGT CGTTTTCC AATGGGAGCA chr2R:5090496-5090616 32 4.81e-05 CCTAGTGTAC CATTTTCC ACCGTTCCCC chr3R:3789749-3789869 14 4.81e-05 tgtacattac cattttcc gattttggta chr2R:5604833-5604953 61 7.11e-05 TCACATTTTT AGTGTTCC TTCTTATATT chr2L:10269949-10270069 19 7.11e-05 TGCAATTTTC AGTGTTCC CGTTTCAGCG chr2L:22579042-22579162 38 7.11e-05 TTCATCGTTC CGTGTTCA TCACCAGTTG chr2R:5260649-5260769 90 7.11e-05 TTCATATGTT CGTGTTCA GGAAAAGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRTGTTCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:3103820-3103940 6.8e-06 54_[+5]_58 chr2R:24099095-24099215 6.8e-06 13_[+5]_99 chrX:22444109-22444229 6.8e-06 11_[+5]_101 chr2R:24029221-24029341 6.8e-06 35_[+5]_77 chr2R:4225052-4225172 6.8e-06 55_[+5]_57 chr4:181765-181885 1.8e-05 25_[+5]_87 chr3R:1688799-1688919 1.8e-05 11_[+5]_101 chr4:959765-959885 1.8e-05 40_[+5]_72 chr2R:4130884-4131004 1.8e-05 35_[+5]_77 chr2L:23065305-23065425 1.8e-05 10_[+5]_102 chr2R:5981220-5981340 2.9e-05 71_[+5]_41 chr2L:23174362-23174482 2.9e-05 33_[+5]_79 chr4:129755-129875 2.9e-05 31_[+5]_81 chr3L:23580757-23580877 2.9e-05 86_[+5]_26 chr2R:5090496-5090616 4.8e-05 31_[+5]_81 chr3R:3789749-3789869 4.8e-05 13_[+5]_99 chr2R:5604833-5604953 7.1e-05 60_[+5]_52 chr2L:10269949-10270069 7.1e-05 18_[+5]_94 chr2L:22579042-22579162 7.1e-05 37_[+5]_75 chr2R:5260649-5260769 7.1e-05 89_[+5]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRTGTTCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRTGTTCC width=8 seqs=20 chr3R:3103820-3103940 ( 55) CGTGTTCC 1 chr2R:24099095-24099215 ( 14) CGTGTTCC 1 chrX:22444109-22444229 ( 12) CGTGTTCC 1 chr2R:24029221-24029341 ( 36) CGTGTTCC 1 chr2R:4225052-4225172 ( 56) CGTGTTCC 1 chr4:181765-181885 ( 26) CATGTTCC 1 chr3R:1688799-1688919 ( 12) CATGTTCC 1 chr4:959765-959885 ( 41) CATGTTCC 1 chr2R:4130884-4131004 ( 36) CATGTTCC 1 chr2L:23065305-23065425 ( 11) CATGTTCC 1 chr2R:5981220-5981340 ( 72) CGTTTTCC 1 chr2L:23174362-23174482 ( 34) CGTTTTCC 1 chr4:129755-129875 ( 32) CGTTTTCC 1 chr3L:23580757-23580877 ( 87) CGTTTTCC 1 chr2R:5090496-5090616 ( 32) CATTTTCC 1 chr3R:3789749-3789869 ( 14) CATTTTCC 1 chr2R:5604833-5604953 ( 61) AGTGTTCC 1 chr2L:10269949-10270069 ( 19) AGTGTTCC 1 chr2L:22579042-22579162 ( 38) CGTGTTCA 1 chr2R:5260649-5260769 ( 90) CGTGTTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRTGTTCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7147 E= 3.8e+001 -166 227 -1097 -1097 15 -1097 179 -1097 -1097 -1097 -1097 169 -1097 -1097 190 -5 -1097 -1097 -1097 169 -1097 -1097 -1097 169 -1097 243 -1097 -1097 -166 227 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRTGTTCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 3.8e+001 0.100000 0.900000 0.000000 0.000000 0.350000 0.000000 0.650000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.700000 0.300000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRTGTTCC MEME-5 regular expression -------------------------------------------------------------------------------- C[GA]T[GT]TTCC -------------------------------------------------------------------------------- Time 31.84 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10231653-10231773 9.89e-02 120 chr2L:23315170-23315290 8.07e-01 120 chr2R:4547344-4547464 7.97e-01 120 chr2L:22574479-22574599 5.88e-01 120 chr2R:1071885-1072005 6.73e-01 120 chr2R:1071329-1071449 5.86e-01 120 chr2R:4827348-4827468 8.81e-01 120 chr2L:10423293-10423413 5.86e-01 120 chr2L:10333220-10333340 5.95e-02 16_[+3(5.32e-05)]_96 chr4:1234893-1235013 8.80e-01 120 chr3L:23096924-23097044 6.34e-01 120 chr2R:5980738-5980858 2.97e-01 32_[+1(8.48e-05)]_80 chr2L:8134102-8134222 6.11e-01 120 chrX:9090071-9090191 4.42e-02 80_[+4(1.99e-05)]_32 chr2R:2565385-2565505 5.22e-01 120 chr2R:4471554-4471674 6.31e-01 120 chrX:15934241-15934361 9.60e-01 120 chr2L:4442318-4442438 2.50e-02 29_[+1(5.26e-05)]_83 chr2R:1441014-1441134 5.62e-01 120 chr2R:5258864-5258984 9.99e-01 120 chrX:18138384-18138504 6.21e-02 64_[+1(3.29e-05)]_3_[+1(3.29e-05)]_\ 37 chr3L:25108869-25108989 1.10e-01 120 chrX:16361483-16361603 1.97e-02 71_[+3(2.57e-05)]_41 chr3L:23580757-23580877 2.45e-02 86_[+5(2.93e-05)]_26 chr2L:10439345-10439465 7.12e-03 66_[+1(3.29e-05)]_46 chr3L:23150429-23150549 2.33e-01 31_[+3(6.71e-05)]_81 chr2R:5260649-5260769 2.06e-02 89_[+5(7.11e-05)]_23 chr3R:2858590-2858710 5.11e-01 120 chr2R:3500677-3500797 9.59e-01 120 chr2L:22579042-22579162 1.46e-01 37_[+5(7.11e-05)]_75 chr3R:25049503-25049623 8.11e-01 120 chr2R:1527036-1527156 9.20e-02 120 chr2L:23313589-23313709 3.13e-02 73_[+4(1.99e-05)]_39 chr2R:4225052-4225172 1.25e-01 55_[+5(6.78e-06)]_57 chr4:610552-610672 8.74e-01 120 chr3L:27858278-27858398 5.56e-02 4_[+1(3.29e-05)]_108 chr2L:10327935-10328055 1.72e-02 21_[+3(4.14e-05)]_91 chrX:15785997-15786117 1.69e-02 72_[+2(7.04e-06)]_40 chr3L:20001019-20001139 2.79e-01 63_[+1(8.48e-05)]_49 chr2L:22550171-22550291 5.40e-02 60_[+3(1.88e-05)]_52 chr2L:2979245-2979365 5.25e-02 64_[+4(1.99e-05)]_48 chr2R:24029221-24029341 4.87e-03 35_[+5(6.78e-06)]_77 chr3L:28012618-28012738 6.69e-01 120 chr3L:24927043-24927163 6.72e-01 120 chr2L:23065305-23065425 8.93e-02 10_[+5(1.82e-05)]_102 chr2L:10419083-10419203 1.24e-01 91_[+1(8.48e-05)]_21 chr3R:3843060-3843180 1.19e-01 120 chr2R:5088733-5088853 2.20e-01 120 chr4:129755-129875 3.74e-02 31_[+5(2.93e-05)]_81 chrX:15849246-15849366 2.55e-03 75_[+4(1.99e-05)]_37 chr3R:566832-566952 6.70e-01 120 chr2L:10269949-10270069 1.44e-01 18_[+5(7.11e-05)]_94 chr2R:5416535-5416655 5.20e-01 120 chr4:958393-958513 6.62e-01 120 chr2L:10422730-10422850 8.58e-01 120 chr3L:26528416-26528536 7.50e-01 120 chr3L:27262106-27262226 4.67e-01 120 chr3L:3159961-3160081 5.60e-01 120 chr2R:4546594-4546714 9.92e-01 120 chr3R:4858644-4858764 7.59e-01 120 chr2R:5144605-5144725 1.27e-01 15_[+1(3.29e-05)]_97 chr3R:3734099-3734219 4.60e-02 94_[+1(3.29e-05)]_18 chr3L:27134324-27134444 6.85e-02 120 chr2R:5350651-5350771 3.13e-01 63_[+3(5.32e-05)]_49 chr3R:3734819-3734939 4.20e-01 120 chr2R:4824301-4824421 1.69e-02 67_[+4(1.99e-05)]_45 chr3L:27136399-27136519 5.41e-01 120 chr3L:23099534-23099654 7.89e-01 120 chr3R:3789749-3789869 2.03e-01 13_[+5(4.81e-05)]_99 chr2R:2846663-2846783 6.70e-01 120 chr2L:10380006-10380126 2.27e-02 83_[+1(3.29e-05)]_29 chr2L:10263525-10263645 1.58e-01 120 chr2L:18449193-18449313 9.85e-01 120 chr2R:1521285-1521405 3.32e-02 51_[+1(5.26e-05)]_61 chr3L:23258653-23258773 1.18e-01 21_[+2(3.00e-05)]_91 chr2R:4471045-4471165 3.20e-02 9_[+3(6.98e-06)]_103 chrX:22444109-22444229 2.75e-03 11_[+5(6.78e-06)]_45_[+2(4.88e-05)]_\ 48 chr2L:22758301-22758421 3.28e-01 120 chr4:959558-959678 2.86e-01 120 chr3R:22462020-22462140 2.21e-04 8_[+3(6.98e-06)]_7_[+1(3.29e-05)]_\ 89 chr2R:4544695-4544815 4.85e-01 120 chr2R:8644813-8644933 1.54e-01 120 chr3R:3118007-3118127 6.49e-04 10_[+4(3.18e-05)]_41_[+2(7.04e-06)]_\ 53 chr2R:4272506-4272626 8.48e-03 87_[+2(4.88e-05)]_25 chr2L:2145120-2145240 7.96e-05 9_[+2(9.84e-05)]_22_[+3(6.98e-06)]_\ 73 chr2R:4618294-4618414 9.39e-01 120 chr3L:23714916-23715036 9.62e-01 120 chr2R:5653578-5653698 6.90e-01 120 chr4:788484-788604 7.25e-02 104_[+2(6.05e-05)]_8 chr3R:3750284-3750404 2.87e-03 120 chr2R:24099095-24099215 9.38e-02 13_[+5(6.78e-06)]_99 chr2L:23068354-23068474 2.44e-01 120 chr2L:22981723-22981843 1.89e-01 120 chr3R:3621117-3621237 1.75e-01 120 chr3R:22745546-22745666 1.16e-04 29_[+3(6.98e-06)]_57_[+2(7.04e-06)]_\ 18 chr3R:3623030-3623150 3.41e-01 120 chr2R:4616610-4616730 8.72e-01 120 chr2L:22538148-22538268 8.69e-01 120 chr3L:23583687-23583807 3.52e-02 23_[+1(8.48e-05)]_89 chr2R:5090496-5090616 1.38e-01 31_[+5(4.81e-05)]_81 chr4:1231770-1231890 1.41e-01 84_[+1(3.29e-05)]_28 chr2L:23176134-23176254 8.66e-01 120 chr2L:23174362-23174482 1.75e-01 33_[+5(2.93e-05)]_79 chr4:193832-193952 1.45e-01 120 chr2R:5251034-5251154 3.73e-02 22_[+4(1.99e-05)]_90 chrX:11149310-11149430 3.58e-02 120 chr2L:10255851-10255971 4.07e-02 44_[+4(1.99e-05)]_68 chr2L:10314783-10314903 8.55e-04 3_[+2(4.88e-05)]_19_[+1(5.26e-05)]_\ 82 chr3L:24976126-24976246 6.58e-01 120 chr4:445209-445329 3.32e-01 120 chr3L:24537263-24537383 3.05e-01 120 chr2R:5371059-5371179 8.92e-01 120 chr2L:10264047-10264167 2.79e-02 120 chrX:19667548-19667668 1.70e-04 3_[+2(3.00e-05)]_36_[+4(1.99e-05)]_\ 65 chr2R:4788638-4788758 2.67e-01 120 chr2R:4824807-4824927 8.31e-01 120 chr2R:4594394-4594514 4.90e-01 120 chrX:15933656-15933776 6.42e-02 13_[+3(6.98e-06)]_99 chr2R:5013765-5013885 9.41e-01 120 chr2R:4130884-4131004 1.59e-02 35_[+5(1.82e-05)]_77 chr2L:22567558-22567678 1.17e-01 120 chr2L:22578040-22578160 6.69e-01 120 chr2R:4013985-4014105 1.91e-01 105_[+1(8.48e-05)]_7 chr3L:24231469-24231589 6.15e-02 89_[+1(3.29e-05)]_23 chr3R:7080371-7080491 1.38e-02 50_[+4(1.99e-05)]_62 chr3L:23279154-23279274 1.90e-03 40_[+1(3.29e-05)]_48_[+3(2.99e-05)]_\ 16 chr2L:10312085-10312205 1.06e-03 13_[+3(6.98e-06)]_29_[+4(3.18e-05)]_\ 62 chr2R:5663170-5663290 1.25e-01 120 chr2R:5652836-5652956 3.20e-01 120 chr2L:10239242-10239362 3.66e-01 120 chr3L:23339200-23339320 4.81e-02 120 chrX:11148550-11148670 2.41e-02 56_[+3(6.98e-06)]_56 chr2L:5000977-5001097 9.32e-02 14_[+4(1.99e-05)]_98 chr2L:10232395-10232515 6.07e-03 82_[+1(3.29e-05)]_30 chr2L:22247819-22247939 1.90e-01 77_[+2(6.74e-05)]_35 chrX:15996950-15997070 1.32e-02 83_[+2(1.13e-05)]_29 chrX:20162706-20162826 8.83e-01 120 chr2R:12163041-12163161 2.41e-02 61_[+4(1.99e-05)]_51 chr2R:5088287-5088407 1.02e-01 120 chr3R:3587067-3587187 3.09e-01 120 chr3L:24028386-24028506 2.03e-01 120 chr2R:20667282-20667402 7.20e-02 21_[+2(7.04e-06)]_91 chr2R:5307156-5307276 4.39e-02 120 chr3R:2111116-2111236 9.95e-01 120 chr3L:23338092-23338212 6.47e-01 120 chr2R:4671737-4671857 8.08e-01 120 chr3R:21214960-21215080 5.60e-01 120 chr2R:1211524-1211644 7.22e-01 120 chr2R:5340955-5341075 4.32e-02 120 chr3L:24536107-24536227 3.07e-03 71_[+1(3.29e-05)]_3_[+3(2.57e-05)]_\ 30 chr2R:5981220-5981340 3.33e-02 71_[+5(2.93e-05)]_41 chr2R:4595202-4595322 2.74e-01 120 chr4:959765-959885 9.87e-04 40_[+5(1.82e-05)]_72 chr3R:1688799-1688919 2.57e-03 11_[+5(1.82e-05)]_101 chr3L:27083913-27084033 7.08e-01 120 chr4:904826-904946 2.09e-01 120 chr3R:3845875-3845995 1.47e-01 120 chr4:570783-570903 2.60e-01 120 chr2R:1264262-1264382 1.04e-01 120 chr2L:10314355-10314475 2.45e-01 120 chr2L:22737147-22737267 5.72e-01 120 chr2R:5663832-5663952 9.74e-01 120 chr2R:1345580-1345700 3.76e-03 37_[+2(1.84e-05)]_75 chr2L:4444677-4444797 3.55e-01 120 chr3L:27265759-27265879 5.26e-01 120 chr2L:22239798-22239918 2.44e-01 120 chr3R:3103820-3103940 9.31e-02 54_[+5(6.78e-06)]_8_[+5(7.11e-05)]_\ 42 chr4:207115-207235 5.72e-01 120 chr3R:3846660-3846780 5.46e-01 120 chr2L:22924711-22924831 1.27e-01 120 chr3L:26014157-26014277 1.50e-02 11_[+3(1.88e-05)]_101 chr3L:27085078-27085198 5.01e-01 120 chr3L:25675668-25675788 8.16e-01 120 chr2L:889948-890068 5.82e-01 120 chr4:130684-130804 8.82e-03 110_[+1(3.29e-05)]_2 chr2R:4728996-4729116 2.29e-01 120 chrX:928023-928143 2.13e-04 57_[+4(5.14e-05)]_43_[+2(7.04e-06)]_\ 4 chr2R:5604833-5604953 2.32e-01 60_[+5(7.11e-05)]_52 chrX:14832550-14832670 1.83e-02 74_[+2(7.04e-06)]_38 chr4:314809-314929 1.53e-01 120 chr3L:27279202-27279322 9.01e-01 120 chr4:313907-314027 7.63e-01 120 chr3L:27859431-27859551 5.19e-01 120 chr3L:25120621-25120741 9.05e-01 120 chr2R:5354491-5354611 7.09e-02 6_[+1(3.29e-05)]_106 chrX:20165916-20166036 3.89e-03 15_[+1(5.26e-05)]_53_[+4(5.14e-05)]_\ 36 chr2R:3581953-3582073 2.49e-01 120 chr2R:5075052-5075172 9.95e-01 120 chr2R:5363123-5363243 2.98e-01 120 chr3L:23125887-23126007 1.16e-01 120 chr3R:30643398-30643518 4.62e-01 120 chr2L:22131315-22131435 9.08e-01 120 chr2R:4517325-4517445 2.99e-01 120 chr2R:5529354-5529474 5.75e-01 120 chr2R:20668009-20668129 5.67e-03 84_[+1(3.29e-05)]_28 chrX:16005756-16005876 4.54e-05 17_[+3(1.88e-05)]_55_[+4(1.99e-05)]_\ 32 chr2L:23075530-23075650 8.59e-01 120 chr4:44843-44963 2.68e-01 120 chr3L:26013666-26013786 5.02e-01 120 chr2R:24037796-24037916 2.34e-01 120 chr2R:5251898-5252018 4.91e-01 120 chr3L:27264608-27264728 9.92e-01 120 chrX:10367803-10367923 2.74e-01 120 chr2R:5671681-5671801 1.40e-02 87_[+2(7.04e-06)]_25 chrX:15788769-15788889 2.13e-02 88_[+2(7.04e-06)]_24 chrX:9295664-9295784 7.61e-01 120 chr2L:10265244-10265364 8.02e-01 120 chr2R:21897839-21897959 6.37e-01 120 chr2R:999990-1000110 3.15e-01 120 chr2L:10403967-10404087 7.14e-02 120 chr3R:3748696-3748816 3.32e-01 120 chr3L:25107921-25108041 7.56e-01 120 chr2R:4618891-4619011 1.78e-01 77_[+2(4.88e-05)]_35 chrX:7286778-7286898 3.43e-03 54_[+2(7.93e-05)]_58 chr3L:23686270-23686390 1.02e-01 120 chr3L:23097511-23097631 9.72e-02 14_[+4(1.99e-05)]_98 chr2R:18094713-18094833 3.86e-01 120 chr3L:24020919-24021039 3.17e-01 120 chr3L:23738534-23738654 6.40e-01 120 chr2L:22121076-22121196 1.64e-01 120 chr2L:22570197-22570317 5.07e-01 120 chr2L:11394235-11394355 3.82e-01 120 chr2R:4783287-4783407 6.05e-01 120 chr2R:1590424-1590544 8.04e-01 120 chr2R:4744277-4744397 5.36e-01 120 chr3L:12734822-12734942 1.46e-01 95_[+1(3.29e-05)]_17 chr4:181765-181885 7.49e-02 25_[+5(1.82e-05)]_87 chr2L:10277535-10277655 2.31e-01 65_[+1(5.26e-05)]_47 chr3L:23250752-23250872 2.15e-01 40_[+1(8.48e-05)]_72 chr2R:20976949-20977069 4.48e-04 93_[+3(6.98e-06)]_19 chr2L:7827687-7827807 5.61e-02 120 chr4:1260497-1260617 6.59e-01 120 chr3R:1212679-1212799 1.75e-01 120 chr2L:10372461-10372581 1.89e-02 98_[+2(1.13e-05)]_14 chr2R:4188155-4188275 5.53e-01 120 chrX:2050709-2050829 6.62e-02 46_[+3(6.71e-05)]_66 chr2R:23003234-23003354 3.43e-01 120 chr3R:31696797-31696917 8.59e-01 120 chr4:1196827-1196947 9.46e-02 22_[+1(3.29e-05)]_90 chr3L:12734592-12734712 6.05e-01 120 chr4:787599-787719 9.82e-02 46_[+1(3.29e-05)]_66 chr2L:13021283-13021403 4.22e-02 17_[+3(4.14e-05)]_95 chr2L:22249830-22249950 1.36e-02 67_[+2(1.13e-05)]_45 chr2L:10362926-10363046 1.96e-01 120 chr2L:4818211-4818331 6.86e-02 83_[+2(7.04e-06)]_29 chr4:1148063-1148183 5.25e-03 82_[+3(1.88e-05)]_30 chr3R:19648382-19648502 5.08e-02 27_[+4(3.18e-05)]_85 chr2R:23187301-23187421 9.02e-01 120 chr2R:9200861-9200981 9.83e-01 120 chr3L:16139247-16139367 3.42e-02 85_[+1(3.29e-05)]_27 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************