******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1602.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:10601805-10601925 1.0000 120 chrX:14583420-14583540 1.0000 120 chr2L:11189234-11189354 1.0000 120 chr2L:19121054-19121174 1.0000 120 chr2R:17533796-17533916 1.0000 120 chr3L:16385972-16386092 1.0000 120 chr3L:14328519-14328639 1.0000 120 chr3R:31704662-31704782 1.0000 120 chr2R:22420679-22420799 1.0000 120 chr3R:27988921-27989041 1.0000 120 chr3L:18297493-18297613 1.0000 120 chr3L:3159744-3159864 1.0000 120 chr2L:17784791-17784911 1.0000 120 chr2R:18715596-18715716 1.0000 120 chr3L:18250838-18250958 1.0000 120 chr2L:838140-838260 1.0000 120 chr2L:15248762-15248882 1.0000 120 chr3L:6969300-6969420 1.0000 120 chr3R:23300703-23300823 1.0000 120 chr3R:21834356-21834476 1.0000 120 chr3L:12336450-12336570 1.0000 120 chr2R:14971112-14971232 1.0000 120 chr3R:5636842-5636962 1.0000 120 chr3R:6791318-6791438 1.0000 120 chr3L:10661133-10661253 1.0000 120 chr2L:10543579-10543699 1.0000 120 chrX:3367409-3367529 1.0000 120 chr2L:13203385-13203505 1.0000 120 chr3L:6981968-6982088 1.0000 120 chr2R:15818635-15818755 1.0000 120 chr3R:27937927-27938047 1.0000 120 chr3L:7861979-7862099 1.0000 120 chr2R:14485540-14485660 1.0000 120 chr3R:14470728-14470848 1.0000 120 chr2R:10439017-10439137 1.0000 120 chr3L:15693273-15693393 1.0000 120 chr2R:12344815-12344935 1.0000 120 chr2L:20676044-20676164 1.0000 120 chrX:17510308-17510428 1.0000 120 chrX:12595744-12595864 1.0000 120 chr3R:8849461-8849581 1.0000 120 chr3R:21856589-21856709 1.0000 120 chr3L:5819408-5819528 1.0000 120 chr2L:1462196-1462316 1.0000 120 chr2L:4055507-4055627 1.0000 120 chr3R:16769551-16769671 1.0000 120 chr2R:20257439-20257559 1.0000 120 chr3R:19875676-19875796 1.0000 120 chr3L:14166407-14166527 1.0000 120 chr3L:7151887-7152007 1.0000 120 chr3L:18349412-18349532 1.0000 120 chr2R:10103729-10103849 1.0000 120 chr3L:11350842-11350962 1.0000 120 chr3L:6797600-6797720 1.0000 120 chr2L:19285647-19285767 1.0000 120 chr3R:16907960-16908080 1.0000 120 chr2L:1427883-1428003 1.0000 120 chr3L:16768426-16768546 1.0000 120 chrX:15594633-15594753 1.0000 120 chr3L:18290433-18290553 1.0000 120 chr2R:17548669-17548789 1.0000 120 chrX:7095006-7095126 1.0000 120 chr2L:10428665-10428785 1.0000 120 chrX:19352862-19352982 1.0000 120 chr3L:10899341-10899461 1.0000 120 chr3L:9972637-9972757 1.0000 120 chr2R:21535560-21535680 1.0000 120 chr3L:11993161-11993281 1.0000 120 chrX:14634803-14634923 1.0000 120 chr3L:3855304-3855424 1.0000 120 chr3L:19636918-19637038 1.0000 120 chr3L:699411-699531 1.0000 120 chr3L:9028202-9028322 1.0000 120 chr3L:16779789-16779909 1.0000 120 chr3L:13411131-13411251 1.0000 120 chr3L:11336543-11336663 1.0000 120 chrX:7162680-7162800 1.0000 120 chr2L:3805375-3805495 1.0000 120 chr3R:21993053-21993173 1.0000 120 chr3L:3873251-3873371 1.0000 120 chr3L:19899059-19899179 1.0000 120 chr3R:25445639-25445759 1.0000 120 chr3R:23297644-23297764 1.0000 120 chr2L:11037890-11038010 1.0000 120 chr3L:11074552-11074672 1.0000 120 chr3R:16718053-16718173 1.0000 120 chr2R:12173419-12173539 1.0000 120 chr3L:905137-905257 1.0000 120 chr2L:18484775-18484895 1.0000 120 chr2R:15351281-15351401 1.0000 120 chr2L:11417617-11417737 1.0000 120 chrX:15653656-15653776 1.0000 120 chr2L:19490223-19490343 1.0000 120 chr2L:827626-827746 1.0000 120 chrX:7617087-7617207 1.0000 120 chr2R:11095298-11095418 1.0000 120 chrX:6973490-6973610 1.0000 120 chr3R:6425807-6425927 1.0000 120 chr2L:7632939-7633059 1.0000 120 chr3R:5660238-5660358 1.0000 120 chr3R:12630505-12630625 1.0000 120 chr2R:14645059-14645179 1.0000 120 chr2R:10196302-10196422 1.0000 120 chr3R:16573902-16574022 1.0000 120 chr2L:14701618-14701738 1.0000 120 chr2R:5128314-5128434 1.0000 120 chr3R:13078408-13078528 1.0000 120 chr3L:14613064-14613184 1.0000 120 chr3R:15676320-15676440 1.0000 120 chr2R:13482217-13482337 1.0000 120 chr3L:3875152-3875272 1.0000 120 chr3L:14977976-14978096 1.0000 120 chr3L:13356140-13356260 1.0000 120 chr3R:21200004-21200124 1.0000 120 chr2R:15381210-15381330 1.0000 120 chr2L:8071818-8071938 1.0000 120 chrX:9137301-9137421 1.0000 120 chr3L:15321061-15321181 1.0000 120 chr3L:20517050-20517170 1.0000 120 chr3L:13929256-13929376 1.0000 120 chr3L:20771281-20771401 1.0000 120 chr2L:7270410-7270530 1.0000 120 chrX:2978185-2978305 1.0000 120 chr2L:6700811-6700931 1.0000 120 chr2R:8045111-8045231 1.0000 120 chr2R:23176752-23176872 1.0000 120 chr3R:30263915-30264035 1.0000 120 chrX:20506082-20506202 1.0000 120 chr2L:18305242-18305362 1.0000 120 chr2L:17583137-17583257 1.0000 120 chr2L:12350975-12351095 1.0000 120 chrX:17473399-17473519 1.0000 120 chr2R:20906667-20906787 1.0000 120 chr2R:16800186-16800306 1.0000 120 chr3R:31744130-31744250 1.0000 120 chr3L:18402670-18402790 1.0000 120 chr3R:10648942-10649062 1.0000 120 chr3R:8744347-8744467 1.0000 120 chr3R:23346967-23347087 1.0000 120 chr2L:8554408-8554528 1.0000 120 chr3R:8867738-8867858 1.0000 120 chr3L:6743427-6743547 1.0000 120 chr2R:15835630-15835750 1.0000 120 chr3L:613688-613808 1.0000 120 chrX:17713549-17713669 1.0000 120 chr3R:11852072-11852192 1.0000 120 chr3L:6059223-6059343 1.0000 120 chr3L:14978180-14978300 1.0000 120 chr2L:3861511-3861631 1.0000 120 chr2R:12468348-12468468 1.0000 120 chr3L:5857028-5857148 1.0000 120 chr3R:29519458-29519578 1.0000 120 chr3L:10745724-10745844 1.0000 120 chr2R:18676520-18676640 1.0000 120 chr3R:31064750-31064870 1.0000 120 chr3R:26888472-26888592 1.0000 120 chr2L:20950799-20950919 1.0000 120 chr2L:10468605-10468725 1.0000 120 chr3R:22625846-22625966 1.0000 120 chr3R:8171627-8171747 1.0000 120 chr3R:26052378-26052498 1.0000 120 chr2R:13924356-13924476 1.0000 120 chr2L:1428472-1428592 1.0000 120 chr2L:18666032-18666152 1.0000 120 chr2R:9286607-9286727 1.0000 120 chr2L:8528515-8528635 1.0000 120 chr3R:18366387-18366507 1.0000 120 chr3R:26188859-26188979 1.0000 120 chr3R:15837186-15837306 1.0000 120 chr2L:3598626-3598746 1.0000 120 chr2L:15908509-15908629 1.0000 120 chrX:13274559-13274679 1.0000 120 chrX:9349333-9349453 1.0000 120 chr2R:17478596-17478716 1.0000 120 chr2L:14094743-14094863 1.0000 120 chr2R:20601155-20601275 1.0000 120 chr3L:1350765-1350885 1.0000 120 chrX:2536290-2536410 1.0000 120 chr3L:772354-772474 1.0000 120 chr3L:15563034-15563154 1.0000 120 chr2L:10442210-10442330 1.0000 120 chr2L:7258203-7258323 1.0000 120 chr2L:6830547-6830667 1.0000 120 chr3L:12277453-12277573 1.0000 120 chr2R:11738678-11738798 1.0000 120 chr2R:12337698-12337818 1.0000 120 chr3R:16837944-16838064 1.0000 120 chr3L:15787516-15787636 1.0000 120 chr2L:1123501-1123621 1.0000 120 chr2L:5238294-5238414 1.0000 120 chrX:17751785-17751905 1.0000 120 chrX:4616998-4617118 1.0000 120 chrX:9356436-9356556 1.0000 120 chr3L:21007863-21007983 1.0000 120 chrX:8777234-8777354 1.0000 120 chr3L:18225992-18226112 1.0000 120 chrX:5285974-5286094 1.0000 120 chr2L:11829394-11829514 1.0000 120 chr3L:11403674-11403794 1.0000 120 chr2L:6019710-6019830 1.0000 120 chr3L:5881713-5881833 1.0000 120 chr2L:14519440-14519560 1.0000 120 chr3R:24917899-24918019 1.0000 120 chr3L:18204051-18204171 1.0000 120 chr3R:8954933-8955053 1.0000 120 chr3R:6468187-6468307 1.0000 120 chr3R:22023294-22023414 1.0000 120 chr3L:3665456-3665576 1.0000 120 chr3R:14609340-14609460 1.0000 120 chr2L:17963141-17963261 1.0000 120 chr3L:8395694-8395814 1.0000 120 chr3R:20542380-20542500 1.0000 120 chr2L:522875-522995 1.0000 120 chr2L:6874676-6874796 1.0000 120 chr2L:10356625-10356745 1.0000 120 chr2R:8615312-8615432 1.0000 120 chr2L:1456324-1456444 1.0000 120 chr3R:19031287-19031407 1.0000 120 chr3R:29997741-29997861 1.0000 120 chr3R:16748685-16748805 1.0000 120 chr2L:20759924-20760044 1.0000 120 chr3R:8207088-8207208 1.0000 120 chr2L:10522681-10522801 1.0000 120 chr2R:25085539-25085659 1.0000 120 chr3L:11483245-11483365 1.0000 120 chr2L:10858176-10858296 1.0000 120 chr3L:6743171-6743291 1.0000 120 chrX:8892756-8892876 1.0000 120 chr3L:14956421-14956541 1.0000 120 chr3R:8789113-8789233 1.0000 120 chr3R:18795429-18795549 1.0000 120 chr3L:16087613-16087733 1.0000 120 chr3L:5987776-5987896 1.0000 120 chr3L:11822482-11822602 1.0000 120 chr3R:16496360-16496480 1.0000 120 chr3L:16571492-16571612 1.0000 120 chrX:12909661-12909781 1.0000 120 chr2R:22690310-22690430 1.0000 120 chr3L:15311615-15311735 1.0000 120 chr3L:8824018-8824138 1.0000 120 chr2L:6698559-6698679 1.0000 120 chr2R:15201402-15201522 1.0000 120 chr3R:31169073-31169193 1.0000 120 chr3R:16469717-16469837 1.0000 120 chrX:7728385-7728505 1.0000 120 chr2L:21143007-21143127 1.0000 120 chr3R:17551217-17551337 1.0000 120 chrX:11454484-11454604 1.0000 120 chr2L:13666266-13666386 1.0000 120 chr2L:4847323-4847443 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG1602/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1602.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.355 C 0.153 G 0.15 T 0.342 Background letter frequencies (from file dataset with add-one prior applied): A 0.355 C 0.153 G 0.15 T 0.342 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGTGGCGC MEME-1 width = 8 sites = 16 llr = 177 E-value = 1.2e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 31:::::: pos.-specific C :1::1a19 probability G 86:a9:9: matrix T :2a:1::1 bits 2.7 * * 2.5 * ** 2.2 * *** 1.9 ***** Relative 1.6 * ****** Entropy 1.4 * ****** (16.0 bits) 1.1 * ****** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGTGGCGC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:16800186-16800306 105 6.08e-07 ATTTCGTATA GGTGGCGC CACTTAAA chr2R:21535560-21535680 43 6.08e-07 ATTTACGCTA GGTGGCGC TTGGCAGGAC chr3R:21856589-21856709 12 6.08e-07 AGTTTTGAGA GGTGGCGC GAGTAGGGAA chr2L:17784791-17784911 9 6.08e-07 GACACATA GGTGGCGC TGAAGCCAAT chrX:15594633-15594753 56 1.23e-06 TACCCGCCTA GCTGGCGC TTTTGTGCTA chr2R:20601155-20601275 53 4.05e-06 CACGTTCTTT GTTGGCGC CTAAAAATGC chr3L:10899341-10899461 37 4.05e-06 CCTTTGTTGT AGTGGCGC CCTCTTTTGT chr2L:1427883-1428003 36 4.05e-06 GTGGGACGAA AGTGGCGC AAACAATGTC chr3R:19875676-19875796 53 4.05e-06 CCAGATGTAC AGTGGCGC GCAAAAGTAT chr3R:16748685-16748805 47 5.49e-06 CGAATCCATA GATGGCGC ATGCAACTCA chr2R:20906667-20906787 87 5.49e-06 ACCAACGGTA GATGGCGC CAGTGCAACA chr3R:31744130-31744250 75 1.09e-05 CCTAGTTGCT GGTGGCGT TCGCCTCACT chrX:15653656-15653776 99 1.09e-05 AACAGCCACA GGTGTCGC TACTGAGCAA chr3R:18366387-18366507 24 1.42e-05 CTATTGAAAA ATTGGCGC CCCACATTTT chr3R:31169073-31169193 14 1.55e-05 CCACTCATCA GCTGCCGC TGGAAAACTA chrX:7162680-7162800 43 2.47e-05 AGTTTCAGCC GTTGGCCC ATAGATGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16800186-16800306 6.1e-07 104_[+1]_8 chr2R:21535560-21535680 6.1e-07 42_[+1]_70 chr3R:21856589-21856709 6.1e-07 11_[+1]_101 chr2L:17784791-17784911 6.1e-07 8_[+1]_104 chrX:15594633-15594753 1.2e-06 55_[+1]_57 chr2R:20601155-20601275 4.1e-06 52_[+1]_60 chr3L:10899341-10899461 4.1e-06 36_[+1]_76 chr2L:1427883-1428003 4.1e-06 35_[+1]_77 chr3R:19875676-19875796 4.1e-06 52_[+1]_60 chr3R:16748685-16748805 5.5e-06 46_[+1]_66 chr2R:20906667-20906787 5.5e-06 86_[+1]_26 chr3R:31744130-31744250 1.1e-05 74_[+1]_38 chrX:15653656-15653776 1.1e-05 98_[+1]_14 chr3R:18366387-18366507 1.4e-05 23_[+1]_89 chr3R:31169073-31169193 1.5e-05 13_[+1]_99 chrX:7162680-7162800 2.5e-05 42_[+1]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTGGCGC width=8 seqs=16 chr2R:16800186-16800306 ( 105) GGTGGCGC 1 chr2R:21535560-21535680 ( 43) GGTGGCGC 1 chr3R:21856589-21856709 ( 12) GGTGGCGC 1 chr2L:17784791-17784911 ( 9) GGTGGCGC 1 chrX:15594633-15594753 ( 56) GCTGGCGC 1 chr2R:20601155-20601275 ( 53) GTTGGCGC 1 chr3L:10899341-10899461 ( 37) AGTGGCGC 1 chr2L:1427883-1428003 ( 36) AGTGGCGC 1 chr3R:19875676-19875796 ( 53) AGTGGCGC 1 chr3R:16748685-16748805 ( 47) GATGGCGC 1 chr2R:20906667-20906787 ( 87) GATGGCGC 1 chr3R:31744130-31744250 ( 75) GGTGGCGT 1 chrX:15653656-15653776 ( 99) GGTGTCGC 1 chr3R:18366387-18366507 ( 24) ATTGGCGC 1 chr3R:31169073-31169193 ( 14) GCTGCCGC 1 chrX:7162680-7162800 ( 43) GTTGGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 1.2e-006 -50 -1064 232 -1064 -150 -29 191 -87 -1064 -1064 -1064 155 -1064 -1064 274 -1064 -1064 -129 254 -245 -1064 271 -1064 -1064 -1064 -129 264 -1064 -1064 262 -1064 -245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.2e-006 0.250000 0.000000 0.750000 0.000000 0.125000 0.125000 0.562500 0.187500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.062500 0.875000 0.062500 0.000000 1.000000 0.000000 0.000000 0.000000 0.062500 0.937500 0.000000 0.000000 0.937500 0.000000 0.062500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTGGCGC MEME-1 regular expression -------------------------------------------------------------------------------- [GA]GTGGCGC -------------------------------------------------------------------------------- Time 6.97 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGMCAYC MEME-2 width = 8 sites = 18 llr = 186 E-value = 1.5e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGMCAYC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:6:9:1 pos.-specific C 1914a178 probability G 9:9::::1 matrix T :1::::3: bits 2.7 * 2.5 * * 2.2 * * * 1.9 *** * * Relative 1.6 *** * * Entropy 1.4 *** **** (14.9 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGACACC consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMCAYC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:16800186-16800306 34 6.70e-07 AACTGAACTA GCGCCACC TGAGACTGCA chr2R:15818635-15818755 59 6.70e-07 CACAAATGCA GCGCCACC TATGCGGGCA chrX:17751785-17751905 39 2.22e-06 ATGAGAGAAG GCGACACC TAGCGGTACA chr2L:7258203-7258323 56 2.22e-06 TTCTATTAAA GCGACACC TATCTTTGGC chrX:15653656-15653776 42 2.22e-06 AACGGCAAGA GCGACACC TATCGTCAGT chr2R:25085539-25085659 34 3.72e-06 AAAGTTGAGT GCGCCATC TTTTGCTTGA chr2L:17784791-17784911 86 4.67e-06 TATACAGATG GCGCCACG AATTTGATGA chr2R:20906667-20906787 16 8.82e-06 ACACATTGCA GCGACATC TATCGTCAAA chr3R:13078408-13078528 82 8.82e-06 taAAAGTGGT GCGACATC TAGTGGTTTT chr3L:13411131-13411251 73 8.82e-06 AACGTTTGCA GCGACATC TAGTGGTGGT chr2L:13666266-13666386 96 1.10e-05 AACAAGAGAG GCGACCCC AATTTTATGA chr3L:5819408-5819528 13 1.10e-05 CTGTGAGAAA GCGACACG CAAGCATGGA chr3L:9972637-9972757 106 1.70e-05 TTGAATAACG GCCACACC CAGAGGA chr2L:4847323-4847443 2 2.16e-05 T GCGCCACA GCTATCCAGA chr3R:16748685-16748805 68 2.16e-05 CAACTCAGTG CCGCCATC TGACGTAAGA chr2R:18715596-18715716 34 2.16e-05 GTTCCATTCA GTGCCACC AAGTGGGATT chr2R:15835630-15835750 100 2.31e-05 TGTTAAGAAT GAGCCACC TGATTTGAAA chr3L:11822482-11822602 81 3.99e-05 TCATTGTCTG CCGACATC CCTTTATTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMCAYC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16800186-16800306 6.7e-07 33_[+2]_79 chr2R:15818635-15818755 6.7e-07 58_[+2]_54 chrX:17751785-17751905 2.2e-06 38_[+2]_74 chr2L:7258203-7258323 2.2e-06 55_[+2]_57 chrX:15653656-15653776 2.2e-06 41_[+2]_71 chr2R:25085539-25085659 3.7e-06 33_[+2]_79 chr2L:17784791-17784911 4.7e-06 85_[+2]_27 chr2R:20906667-20906787 8.8e-06 15_[+2]_97 chr3R:13078408-13078528 8.8e-06 81_[+2]_31 chr3L:13411131-13411251 8.8e-06 72_[+2]_40 chr2L:13666266-13666386 1.1e-05 95_[+2]_17 chr3L:5819408-5819528 1.1e-05 12_[+2]_100 chr3L:9972637-9972757 1.7e-05 105_[+2]_7 chr2L:4847323-4847443 2.2e-05 1_[+2]_111 chr3R:16748685-16748805 2.2e-05 67_[+2]_45 chr2R:18715596-18715716 2.2e-05 33_[+2]_79 chr2R:15835630-15835750 2.3e-05 99_[+2]_13 chr3L:11822482-11822602 4e-05 80_[+2]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMCAYC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGMCAYC width=8 seqs=18 chr2R:16800186-16800306 ( 34) GCGCCACC 1 chr2R:15818635-15818755 ( 59) GCGCCACC 1 chrX:17751785-17751905 ( 39) GCGACACC 1 chr2L:7258203-7258323 ( 56) GCGACACC 1 chrX:15653656-15653776 ( 42) GCGACACC 1 chr2R:25085539-25085659 ( 34) GCGCCATC 1 chr2L:17784791-17784911 ( 86) GCGCCACG 1 chr2R:20906667-20906787 ( 16) GCGACATC 1 chr3R:13078408-13078528 ( 82) GCGACATC 1 chr3L:13411131-13411251 ( 73) GCGACATC 1 chr2L:13666266-13666386 ( 96) GCGACCCC 1 chr3L:5819408-5819528 ( 13) GCGACACG 1 chr3L:9972637-9972757 ( 106) GCCACACC 1 chr2L:4847323-4847443 ( 2) GCGCCACA 1 chr3R:16748685-16748805 ( 68) CCGCCATC 1 chr2R:18715596-18715716 ( 34) GTGCCACC 1 chr2R:15835630-15835750 ( 100) GAGCCACC 1 chr3L:11822482-11822602 ( 81) CCGACATC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMCAYC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 1.5e-003 -1081 -46 257 -1081 -267 254 -1081 -262 -1081 -146 265 -1081 65 154 -1081 -1081 -1081 271 -1081 -1081 141 -146 -1081 -1081 -1081 212 -1081 -4 -267 245 -43 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMCAYC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.5e-003 0.000000 0.111111 0.888889 0.000000 0.055556 0.888889 0.000000 0.055556 0.000000 0.055556 0.944444 0.000000 0.555556 0.444444 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.944444 0.055556 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.055556 0.833333 0.111111 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMCAYC MEME-2 regular expression -------------------------------------------------------------------------------- GCG[AC]CA[CT]C -------------------------------------------------------------------------------- Time 12.71 secs. ******************************************************************************** ******************************************************************************** MOTIF GCSCASTG MEME-3 width = 8 sites = 17 llr = 169 E-value = 2.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCSCASTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::11a:1: pos.-specific C :a59:411 probability G 9:4::6:9 matrix T 1:::::8: bits 2.7 * 2.5 * 2.2 ** * 1.9 ** * * Relative 1.6 ** * * * Entropy 1.4 ** *** * (14.3 bits) 1.1 ****** * 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCCAGTG consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSCASTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7258203-7258323 103 1.47e-06 AGATTTCAGC GCCCAGTG CGCCATCTAG chr2L:3598626-3598746 107 2.91e-06 CACTTTTTTC GCGCAGTG CACAAT chr2L:17784791-17784911 50 2.91e-06 CAACGGTCAA GCGCAGTG TGTTCATAAT chr2L:14519440-14519560 91 4.40e-06 ATACTCCTTT GCCCACTG ATTACAGGGT chr3R:15676320-15676440 105 4.40e-06 TTTTTCGAGT GCCCACTG TTTGTTTG chr2R:14645059-14645179 81 5.87e-06 AAGCACACAG GCGCACTG TGGCGTTTTA chr2L:11829394-11829514 40 7.17e-06 TCTTACCATT GCGCAGCG TGGCCACCTG chr3R:26188859-26188979 14 7.84e-06 AGGCTGCTAT GCCCACCG CGGAGTGTGT chr3R:30263915-30264035 105 9.99e-06 ATCAAGCCGT GCCCAGTC GAGCCGCT chr2L:4847323-4847443 34 1.15e-05 TTCACGTAAA GCGCAGTC AAAAAGCTCA chr2L:1427883-1428003 21 1.49e-05 GTGGCCCATC GCACAGTG GGACGAAAGT chr3R:27937927-27938047 28 1.49e-05 GCACCGTAAT GCACAGTG AGGCGAAGTG chr2L:18305242-18305362 94 3.11e-05 ATTTCAGATT TCCCAGTG TTTTTTCGAG chr3L:13356140-13356260 82 3.11e-05 TTTGTTACGG GCCAAGTG CTAGAATACT chr3L:11993161-11993281 34 4.08e-05 TACATCGTAC GCGCACAG TCACTTAGAG chr2L:6019710-6019830 79 4.90e-05 ATAGACCTGA TCCCACTG TAGCCACACA chr2R:18715596-18715716 17 5.73e-05 CATATATACA GCGAACTG TTCCATTCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSCASTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7258203-7258323 1.5e-06 102_[+3]_10 chr2L:3598626-3598746 2.9e-06 106_[+3]_6 chr2L:17784791-17784911 2.9e-06 49_[+3]_63 chr2L:14519440-14519560 4.4e-06 90_[+3]_22 chr3R:15676320-15676440 4.4e-06 104_[+3]_8 chr2R:14645059-14645179 5.9e-06 80_[+3]_32 chr2L:11829394-11829514 7.2e-06 39_[+3]_73 chr3R:26188859-26188979 7.8e-06 13_[+3]_99 chr3R:30263915-30264035 1e-05 104_[+3]_8 chr2L:4847323-4847443 1.1e-05 33_[+3]_79 chr2L:1427883-1428003 1.5e-05 20_[+3]_92 chr3R:27937927-27938047 1.5e-05 27_[+3]_85 chr2L:18305242-18305362 3.1e-05 93_[+3]_19 chr3L:13356140-13356260 3.1e-05 81_[+3]_31 chr3L:11993161-11993281 4.1e-05 33_[+3]_79 chr2L:6019710-6019830 4.9e-05 78_[+3]_34 chr2R:18715596-18715716 5.7e-05 16_[+3]_96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSCASTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCSCASTG width=8 seqs=17 chr2L:7258203-7258323 ( 103) GCCCAGTG 1 chr2L:3598626-3598746 ( 107) GCGCAGTG 1 chr2L:17784791-17784911 ( 50) GCGCAGTG 1 chr2L:14519440-14519560 ( 91) GCCCACTG 1 chr3R:15676320-15676440 ( 105) GCCCACTG 1 chr2R:14645059-14645179 ( 81) GCGCACTG 1 chr2L:11829394-11829514 ( 40) GCGCAGCG 1 chr3R:26188859-26188979 ( 14) GCCCACCG 1 chr3R:30263915-30264035 ( 105) GCCCAGTC 1 chr2L:4847323-4847443 ( 34) GCGCAGTC 1 chr2L:1427883-1428003 ( 21) GCACAGTG 1 chr3R:27937927-27938047 ( 28) GCACAGTG 1 chr2L:18305242-18305362 ( 94) TCCCAGTG 1 chr3L:13356140-13356260 ( 82) GCCAAGTG 1 chr3L:11993161-11993281 ( 34) GCGCACAG 1 chr2L:6019710-6019830 ( 79) TCCCACTG 1 chr2R:18715596-18715716 ( 17) GCGAACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSCASTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 2.3e+001 -1073 -1073 256 -154 -1073 271 -1073 -1073 -159 162 146 -1073 -159 253 -1073 -1073 149 -1073 -1073 -1073 -1073 143 197 -1073 -259 -38 -1073 127 -1073 -38 256 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSCASTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 2.3e+001 0.000000 0.000000 0.882353 0.117647 0.000000 1.000000 0.000000 0.000000 0.117647 0.470588 0.411765 0.000000 0.117647 0.882353 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.411765 0.588235 0.000000 0.058824 0.117647 0.000000 0.823529 0.000000 0.117647 0.882353 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSCASTG MEME-3 regular expression -------------------------------------------------------------------------------- GC[CG]CA[GC]TG -------------------------------------------------------------------------------- Time 18.46 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCYKGCC MEME-4 width = 8 sites = 12 llr = 124 E-value = 3.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCYKGCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::1:1::: pos.-specific C 6:97::8a probability G 2a::393: matrix T 3::361:: bits 2.7 * * 2.5 * * 2.2 ** * * 1.9 ** *** Relative 1.6 ** *** Entropy 1.4 *** *** (14.9 bits) 1.1 **** *** 0.8 **** *** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCCTGCC consensus T TG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCYKGCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6700811-6700931 69 9.28e-07 TCGGTTATTT CGCCTGCC ACAGATTACA chr2L:18666032-18666152 41 2.12e-06 AAAACTTATC CGCCTGGC GGCTAATCTG chr3L:6797600-6797720 15 5.46e-06 ATTATTTTTA CGCTTGCC AATTTATTAT chr2R:23176752-23176872 30 6.90e-06 TGACACGAAG TGCCTGCC GCTCGCTGCC chr3R:19875676-19875796 90 6.90e-06 CACGCGATTG TGCCTGCC GTCATTGGTG chr3L:6743171-6743291 14 7.57e-06 TTCGTCAACA CGCCAGCC ATCGATGGTT chr2R:20906667-20906787 61 7.84e-06 TTCCAGGAAC GGCCGGGC TCATCGTTAC chr3L:14956421-14956541 34 8.46e-06 AAGGGTTTCT CGCTGGGC AAATAGAAGT chr2L:11829394-11829514 67 9.70e-06 GGTCACGATC GGCTGGCC AGTGTTGGTA chrX:17510308-17510428 113 1.73e-05 GGTACAAAAA CGACGGCC chr3L:6743427-6743547 105 2.12e-05 tttaatAATC TGCTTGCC AATACATG chr3R:20542380-20542500 31 2.48e-05 ATCTTTGTTA CGCCTTCC ATAGTGTTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCYKGCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6700811-6700931 9.3e-07 68_[+4]_44 chr2L:18666032-18666152 2.1e-06 40_[+4]_72 chr3L:6797600-6797720 5.5e-06 14_[+4]_98 chr2R:23176752-23176872 6.9e-06 29_[+4]_83 chr3R:19875676-19875796 6.9e-06 89_[+4]_23 chr3L:6743171-6743291 7.6e-06 13_[+4]_99 chr2R:20906667-20906787 7.8e-06 60_[+4]_52 chr3L:14956421-14956541 8.5e-06 33_[+4]_79 chr2L:11829394-11829514 9.7e-06 66_[+4]_46 chrX:17510308-17510428 1.7e-05 112_[+4] chr3L:6743427-6743547 2.1e-05 104_[+4]_8 chr3R:20542380-20542500 2.5e-05 30_[+4]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCYKGCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCYKGCC width=8 seqs=12 chr2L:6700811-6700931 ( 69) CGCCTGCC 1 chr2L:18666032-18666152 ( 41) CGCCTGGC 1 chr3L:6797600-6797720 ( 15) CGCTTGCC 1 chr2R:23176752-23176872 ( 30) TGCCTGCC 1 chr3R:19875676-19875796 ( 90) TGCCTGCC 1 chr3L:6743171-6743291 ( 14) CGCCAGCC 1 chr2R:20906667-20906787 ( 61) GGCCGGGC 1 chr3L:14956421-14956541 ( 34) CGCTGGGC 1 chr2L:11829394-11829514 ( 67) GGCTGGCC 1 chrX:17510308-17510428 ( 113) CGACGGCC 1 chr3L:6743427-6743547 ( 105) TGCTTGCC 1 chr3R:20542380-20542500 ( 31) CGCCTTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCYKGCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 3.9e+003 -1023 193 15 -45 -1023 -1023 274 -1023 -209 258 -1023 -1023 -1023 212 -1023 -4 -209 -1023 115 77 -1023 -1023 261 -204 -1023 229 74 -1023 -1023 271 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCYKGCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 3.9e+003 0.000000 0.583333 0.166667 0.250000 0.000000 0.000000 1.000000 0.000000 0.083333 0.916667 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.083333 0.000000 0.333333 0.583333 0.000000 0.000000 0.916667 0.083333 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCYKGCC MEME-4 regular expression -------------------------------------------------------------------------------- [CT]GC[CT][TG]G[CG]C -------------------------------------------------------------------------------- Time 24.16 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGGCCGG MEME-5 width = 8 sites = 2 llr = 27 E-value = 1.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGGCCGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::aa:: probability G ::aa::aa matrix T aa:::::: bits 2.7 ****** 2.5 ****** 2.2 ****** 1.9 ****** Relative 1.6 ******** Entropy 1.4 ******** (19.5 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTGGCCGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCCGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7162680-7162800 22 1.39e-06 ACGCCACCTG TTGGCCGG GGCAGTTTCA chr2L:19121054-19121174 34 1.39e-06 TGCCAGTTAC TTGGCCGG AATTTCAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCCGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7162680-7162800 1.4e-06 21_[+5]_91 chr2L:19121054-19121174 1.4e-06 33_[+5]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCCGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGGCCGG width=8 seqs=2 chrX:7162680-7162800 ( 22) TTGGCCGG 1 chr2L:19121054-19121174 ( 34) TTGGCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCCGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.8e+004 -765 -765 -765 154 -765 -765 -765 154 -765 -765 273 -765 -765 -765 273 -765 -765 270 -765 -765 -765 270 -765 -765 -765 -765 273 -765 -765 -765 273 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCCGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.8e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGGCCGG MEME-5 regular expression -------------------------------------------------------------------------------- TTGGCCGG -------------------------------------------------------------------------------- Time 29.86 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10601805-10601925 8.23e-01 120 chrX:14583420-14583540 9.60e-01 120 chr2L:11189234-11189354 5.27e-01 120 chr2L:19121054-19121174 8.07e-03 33_[+5(1.39e-06)]_79 chr2R:17533796-17533916 9.77e-01 120 chr3L:16385972-16386092 7.50e-01 120 chr3L:14328519-14328639 7.31e-01 120 chr3R:31704662-31704782 8.38e-01 120 chr2R:22420679-22420799 1.50e-01 120 chr3R:27988921-27989041 1.50e-01 120 chr3L:18297493-18297613 9.84e-01 120 chr3L:3159744-3159864 8.57e-01 120 chr2L:17784791-17784911 5.54e-08 8_[+1(6.08e-07)]_33_[+3(2.91e-06)]_\ 28_[+2(4.67e-06)]_27 chr2R:18715596-18715716 4.50e-04 16_[+3(5.73e-05)]_9_[+2(2.16e-05)]_\ 79 chr3L:18250838-18250958 9.70e-01 120 chr2L:838140-838260 5.65e-01 120 chr2L:15248762-15248882 1.79e-01 120 chr3L:6969300-6969420 9.98e-01 120 chr3R:23300703-23300823 6.26e-01 120 chr3R:21834356-21834476 1.11e-01 120 chr3L:12336450-12336570 1.02e-01 120 chr2R:14971112-14971232 4.67e-02 120 chr3R:5636842-5636962 5.50e-01 120 chr3R:6791318-6791438 9.98e-01 120 chr3L:10661133-10661253 4.30e-01 120 chr2L:10543579-10543699 9.42e-01 120 chrX:3367409-3367529 3.47e-01 120 chr2L:13203385-13203505 9.97e-01 120 chr3L:6981968-6982088 9.96e-01 120 chr2R:15818635-15818755 1.07e-03 58_[+2(6.70e-07)]_54 chr3R:27937927-27938047 1.13e-01 15_[+3(7.58e-05)]_4_[+3(1.49e-05)]_\ 2_[+3(3.93e-05)]_75 chr3L:7861979-7862099 8.26e-01 120 chr2R:14485540-14485660 8.90e-01 120 chr3R:14470728-14470848 3.94e-01 120 chr2R:10439017-10439137 6.20e-01 120 chr3L:15693273-15693393 6.91e-01 120 chr2R:12344815-12344935 3.01e-01 120 chr2L:20676044-20676164 9.88e-01 120 chrX:17510308-17510428 3.96e-03 79_[+2(7.28e-05)]_25_[+4(1.73e-05)] chrX:12595744-12595864 3.91e-01 120 chr3R:8849461-8849581 8.62e-02 120 chr3R:21856589-21856709 4.16e-03 11_[+1(6.08e-07)]_101 chr3L:5819408-5819528 2.83e-02 12_[+2(1.10e-05)]_100 chr2L:1462196-1462316 2.45e-01 120 chr2L:4055507-4055627 9.89e-01 120 chr3R:16769551-16769671 7.40e-01 120 chr2R:20257439-20257559 8.31e-01 120 chr3R:19875676-19875796 6.30e-06 52_[+1(4.05e-06)]_29_[+4(6.90e-06)]_\ 23 chr3L:14166407-14166527 1.25e-01 120 chr3L:7151887-7152007 7.43e-01 120 chr3L:18349412-18349532 6.06e-01 120 chr2R:10103729-10103849 4.68e-01 120 chr3L:11350842-11350962 7.64e-01 120 chr3L:6797600-6797720 9.05e-02 14_[+4(5.46e-06)]_98 chr2L:19285647-19285767 6.74e-01 120 chr3R:16907960-16908080 8.48e-01 120 chr2L:1427883-1428003 8.32e-05 9_[+1(2.47e-05)]_3_[+3(1.49e-05)]_7_\ [+1(4.05e-06)]_77 chr3L:16768426-16768546 8.35e-01 120 chrX:15594633-15594753 6.16e-04 55_[+1(1.23e-06)]_57 chr3L:18290433-18290553 9.88e-01 120 chr2R:17548669-17548789 1.42e-01 120 chrX:7095006-7095126 8.97e-01 120 chr2L:10428665-10428785 1.06e-01 120 chrX:19352862-19352982 6.09e-01 120 chr3L:10899341-10899461 7.09e-05 36_[+1(4.05e-06)]_76 chr3L:9972637-9972757 1.53e-02 105_[+2(1.70e-05)]_7 chr2R:21535560-21535680 4.48e-06 42_[+1(6.08e-07)]_[+5(5.35e-05)]_50_\ [+1(5.03e-05)]_4 chr3L:11993161-11993281 7.18e-03 33_[+3(4.08e-05)]_79 chrX:14634803-14634923 4.65e-01 120 chr3L:3855304-3855424 8.02e-01 120 chr3L:19636918-19637038 8.41e-01 120 chr3L:699411-699531 2.71e-01 120 chr3L:9028202-9028322 5.20e-01 120 chr3L:16779789-16779909 8.10e-01 120 chr3L:13411131-13411251 4.90e-03 72_[+2(8.82e-06)]_40 chr3L:11336543-11336663 3.25e-02 120 chrX:7162680-7162800 1.23e-06 21_[+5(1.39e-06)]_13_[+1(2.47e-05)]_\ 70 chr2L:3805375-3805495 1.00e+00 120 chr3R:21993053-21993173 2.72e-01 120 chr3L:3873251-3873371 9.95e-01 120 chr3L:19899059-19899179 7.23e-01 120 chr3R:25445639-25445759 9.98e-01 120 chr3R:23297644-23297764 9.87e-01 120 chr2L:11037890-11038010 5.93e-01 120 chr3L:11074552-11074672 3.52e-01 120 chr3R:16718053-16718173 8.20e-01 120 chr2R:12173419-12173539 3.26e-01 120 chr3L:905137-905257 4.80e-01 120 chr2L:18484775-18484895 7.33e-01 120 chr2R:15351281-15351401 9.87e-01 120 chr2L:11417617-11417737 8.68e-01 120 chrX:15653656-15653776 1.24e-04 41_[+2(2.22e-06)]_49_[+1(1.09e-05)]_\ 14 chr2L:19490223-19490343 9.96e-01 120 chr2L:827626-827746 7.11e-01 120 chrX:7617087-7617207 4.26e-01 120 chr2R:11095298-11095418 5.05e-01 120 chrX:6973490-6973610 8.91e-01 120 chr3R:6425807-6425927 9.88e-01 120 chr2L:7632939-7633059 3.61e-01 120 chr3R:5660238-5660358 9.27e-01 120 chr3R:12630505-12630625 9.99e-01 120 chr2R:14645059-14645179 2.11e-03 80_[+3(5.87e-06)]_32 chr2R:10196302-10196422 7.32e-01 120 chr3R:16573902-16574022 2.31e-01 120 chr2L:14701618-14701738 6.09e-02 120 chr2R:5128314-5128434 2.01e-01 120 chr3R:13078408-13078528 7.40e-03 24_[+2(9.40e-05)]_49_[+2(8.82e-06)]_\ 31 chr3L:14613064-14613184 4.84e-01 120 chr3R:15676320-15676440 2.77e-03 104_[+3(4.40e-06)]_8 chr2R:13482217-13482337 9.89e-01 120 chr3L:3875152-3875272 9.88e-01 120 chr3L:14977976-14978096 5.11e-01 120 chr3L:13356140-13356260 9.04e-02 81_[+3(3.11e-05)]_31 chr3R:21200004-21200124 3.29e-01 120 chr2R:15381210-15381330 5.89e-01 120 chr2L:8071818-8071938 2.52e-01 120 chrX:9137301-9137421 1.67e-01 120 chr3L:15321061-15321181 7.92e-01 120 chr3L:20517050-20517170 2.96e-01 120 chr3L:13929256-13929376 4.86e-01 120 chr3L:20771281-20771401 9.32e-01 120 chr2L:7270410-7270530 6.41e-01 120 chrX:2978185-2978305 7.81e-02 120 chr2L:6700811-6700931 5.00e-05 68_[+4(9.28e-07)]_44 chr2R:8045111-8045231 3.89e-01 120 chr2R:23176752-23176872 1.44e-04 29_[+4(6.90e-06)]_83 chr3R:30263915-30264035 9.74e-04 21_[+4(6.68e-05)]_75_[+3(9.99e-06)]_\ 8 chrX:20506082-20506202 2.63e-01 120 chr2L:18305242-18305362 7.56e-02 93_[+3(3.11e-05)]_19 chr2L:17583137-17583257 4.20e-01 120 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chr3L:6743171-6743291 4.42e-05 13_[+4(7.57e-06)]_99 chrX:8892756-8892876 3.10e-01 120 chr3L:14956421-14956541 2.75e-04 33_[+4(8.46e-06)]_79 chr3R:8789113-8789233 3.87e-03 39_[+1(8.15e-05)]_73 chr3R:18795429-18795549 2.07e-01 120 chr3L:16087613-16087733 9.27e-01 120 chr3L:5987776-5987896 6.26e-01 120 chr3L:11822482-11822602 2.10e-02 80_[+2(3.99e-05)]_32 chr3R:16496360-16496480 9.98e-01 120 chr3L:16571492-16571612 4.00e-01 120 chrX:12909661-12909781 7.75e-01 120 chr2R:22690310-22690430 8.35e-01 120 chr3L:15311615-15311735 9.86e-01 120 chr3L:8824018-8824138 5.73e-01 120 chr2L:6698559-6698679 8.68e-01 120 chr2R:15201402-15201522 1.32e-02 31_[+4(9.39e-05)]_81 chr3R:31169073-31169193 1.08e-02 13_[+1(1.55e-05)]_99 chr3R:16469717-16469837 9.48e-01 120 chrX:7728385-7728505 6.95e-01 120 chr2L:21143007-21143127 8.83e-01 120 chr3R:17551217-17551337 5.85e-01 120 chrX:11454484-11454604 1.79e-01 120 chr2L:13666266-13666386 1.49e-02 95_[+2(1.10e-05)]_17 chr2L:4847323-4847443 6.00e-04 1_[+2(2.16e-05)]_24_[+3(1.15e-05)]_\ 79 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n10.farnam.hpc.yale.internal ********************************************************************************