******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG15696.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:19765593-19765713 1.0000 120 chrX:17872451-17872571 1.0000 120 chr3R:8285724-8285844 1.0000 120 chr3R:6663073-6663193 1.0000 120 chr3R:5761094-5761214 1.0000 120 chr3R:12113830-12113950 1.0000 120 chr3R:22161763-22161883 1.0000 120 chr3R:19340426-19340546 1.0000 120 chrX:16205236-16205356 1.0000 120 chr3L:7943182-7943302 1.0000 120 chr2R:9421205-9421325 1.0000 120 chr2L:3853662-3853782 1.0000 120 chr3L:14974629-14974749 1.0000 120 chr2R:9870577-9870697 1.0000 120 chr3R:19343708-19343828 1.0000 120 chr3L:15232520-15232640 1.0000 120 chrX:8830195-8830315 1.0000 120 chr3L:973504-973624 1.0000 120 chr3R:23031038-23031158 1.0000 120 chr3R:8336260-8336380 1.0000 120 chr3L:12453632-12453752 1.0000 120 chrX:8444396-8444516 1.0000 120 chr3R:22635004-22635124 1.0000 120 chr3R:16904986-16905106 1.0000 120 chrX:414469-414589 1.0000 120 chr3R:16033897-16034017 1.0000 120 chrX:9689259-9689379 1.0000 120 chr3L:20644806-20644926 1.0000 120 chr2L:8548247-8548367 1.0000 120 chrX:3354517-3354637 1.0000 120 chr2L:15458235-15458355 1.0000 120 chr2R:12896100-12896220 1.0000 120 chr2R:16479733-16479853 1.0000 120 chr2L:15324248-15324368 1.0000 120 chr3L:23738611-23738731 1.0000 120 chr3R:11351438-11351558 1.0000 120 chr2L:3548995-3549115 1.0000 120 chr3R:15587633-15587753 1.0000 120 chrX:2295169-2295289 1.0000 120 chr3R:21825283-21825403 1.0000 120 chr3L:13259782-13259902 1.0000 120 chrX:12276715-12276835 1.0000 120 chr3L:11345695-11345815 1.0000 120 chr3R:16630680-16630800 1.0000 120 chr3R:30770210-30770330 1.0000 120 chr3R:29266647-29266767 1.0000 120 chr3L:6312186-6312306 1.0000 120 chr2L:9990247-9990367 1.0000 120 chr2R:11403183-11403303 1.0000 120 chrX:8665762-8665882 1.0000 120 chrX:18207709-18207829 1.0000 120 chr2L:14586816-14586936 1.0000 120 chr3L:3628078-3628198 1.0000 120 chr2L:3555812-3555932 1.0000 120 chr2L:15486606-15486726 1.0000 120 chr2R:14810361-14810481 1.0000 120 chr3L:1358417-1358537 1.0000 120 chrX:17504487-17504607 1.0000 120 chr3L:20687548-20687668 1.0000 120 chr3L:4992228-4992348 1.0000 120 chrX:16660747-16660867 1.0000 120 chr3L:21727144-21727264 1.0000 120 chr3L:13049776-13049896 1.0000 120 chr2L:2461727-2461847 1.0000 120 chr2L:12589016-12589136 1.0000 120 chr3R:9035409-9035529 1.0000 120 chr3L:15847421-15847541 1.0000 120 chrX:423510-423630 1.0000 120 chr3L:15315225-15315345 1.0000 120 chrX:9729747-9729867 1.0000 120 chr2L:8762991-8763111 1.0000 120 chr2L:1557152-1557272 1.0000 120 chr3L:22162708-22162828 1.0000 120 chr2R:20027197-20027317 1.0000 120 chr2R:20127312-20127432 1.0000 120 chr3R:31706975-31707095 1.0000 120 chr2L:3819045-3819165 1.0000 120 chrX:7569842-7569962 1.0000 120 chr3L:14953003-14953123 1.0000 120 chrX:15674487-15674607 1.0000 120 chrX:4458654-4458774 1.0000 120 chr3L:14971969-14972089 1.0000 120 chr3L:14447072-14447192 1.0000 120 chr2L:9189451-9189571 1.0000 120 chr2L:15741550-15741670 1.0000 120 chr2L:3584439-3584559 1.0000 120 chr2L:21111995-21112115 1.0000 120 chr2L:8276391-8276511 1.0000 120 chr3L:15330195-15330315 1.0000 120 chr3L:19179586-19179706 1.0000 120 chrX:18946950-18947070 1.0000 120 chr3R:14589589-14589709 1.0000 120 chr2L:18895198-18895318 1.0000 120 chr3L:7957066-7957186 1.0000 120 chrX:19323171-19323291 1.0000 120 chr2L:12641563-12641683 1.0000 120 chr3R:19339349-19339469 1.0000 120 chr3R:20276882-20277002 1.0000 120 chr3L:3843080-3843200 1.0000 120 chrX:3832381-3832501 1.0000 120 chr3R:21535477-21535597 1.0000 120 chrX:4574060-4574180 1.0000 120 chr3L:6589800-6589920 1.0000 120 chr2L:8842296-8842416 1.0000 120 chrX:4459768-4459888 1.0000 120 chr3L:9015291-9015411 1.0000 120 chr3L:6834711-6834831 1.0000 120 chrX:12119483-12119603 1.0000 120 chr3R:30812101-30812221 1.0000 120 chr3R:8683398-8683518 1.0000 120 chr2R:12910295-12910415 1.0000 120 chr3L:12444223-12444343 1.0000 120 chr3L:15802807-15802927 1.0000 120 chr3R:8850774-8850894 1.0000 120 chr2R:14312325-14312445 1.0000 120 chr3R:24270188-24270308 1.0000 120 chr3R:6949441-6949561 1.0000 120 chr2R:6603122-6603242 1.0000 120 chr2L:6177326-6177446 1.0000 120 chr2L:5239537-5239657 1.0000 120 chrX:18208571-18208691 1.0000 120 chr3R:20548393-20548513 1.0000 120 chr3L:5989511-5989631 1.0000 120 chrX:7169603-7169723 1.0000 120 chr3L:15320337-15320457 1.0000 120 chr3R:21857678-21857798 1.0000 120 chr3R:5327987-5328107 1.0000 120 chr3L:6840004-6840124 1.0000 120 chr3L:14152735-14152855 1.0000 120 chr2R:9660226-9660346 1.0000 120 chr2R:6037832-6037952 1.0000 120 chr3L:14961234-14961354 1.0000 120 chr3R:23740806-23740926 1.0000 120 chr3L:8713153-8713273 1.0000 120 chr2L:3570662-3570782 1.0000 120 chr2L:17262370-17262490 1.0000 120 chr3L:16743996-16744116 1.0000 120 chr3R:19370874-19370994 1.0000 120 chr3L:13622907-13623027 1.0000 120 chr3L:3978071-3978191 1.0000 120 chr2R:8177300-8177420 1.0000 120 chr2R:25098464-25098584 1.0000 120 chr2L:7277724-7277844 1.0000 120 chr2L:7302876-7302996 1.0000 120 chr2R:18675055-18675175 1.0000 120 chr3R:4947885-4948005 1.0000 120 chr2R:22158061-22158181 1.0000 120 chr2R:18202733-18202853 1.0000 120 chr2L:11326523-11326643 1.0000 120 chr2L:7277966-7278086 1.0000 120 chr2R:19569822-19569942 1.0000 120 chr3R:29548888-29549008 1.0000 120 chr2R:20091288-20091408 1.0000 120 chr3R:14484695-14484815 1.0000 120 chr2L:20935492-20935612 1.0000 120 chr2R:18677903-18678023 1.0000 120 chrX:3344785-3344905 1.0000 120 chrX:457942-458062 1.0000 120 chr3R:5320777-5320897 1.0000 120 chr3L:11004166-11004286 1.0000 120 chrX:382813-382933 1.0000 120 chr2L:22037021-22037141 1.0000 120 chr3L:11439711-11439831 1.0000 120 chr3R:10599074-10599194 1.0000 120 chr2R:7691616-7691736 1.0000 120 chr3R:23133687-23133807 1.0000 120 chrX:7556370-7556490 1.0000 120 chr2L:8558718-8558838 1.0000 120 chr2L:8787690-8787810 1.0000 120 chr3L:590015-590135 1.0000 120 chr2R:12458264-12458384 1.0000 120 chr3R:15667249-15667369 1.0000 120 chr3R:6664432-6664552 1.0000 120 chr3R:21001273-21001393 1.0000 120 chr3R:17825931-17826051 1.0000 120 chr3R:13404957-13405077 1.0000 120 chr2L:1448334-1448454 1.0000 120 chr2L:4378501-4378621 1.0000 120 chr3R:13972303-13972423 1.0000 120 chr2R:9703317-9703437 1.0000 120 chr3L:1083426-1083546 1.0000 120 chr2R:6528068-6528188 1.0000 120 chrX:19843030-19843150 1.0000 120 chr3L:18225112-18225232 1.0000 120 chr2L:9586100-9586220 1.0000 120 chr3R:19246466-19246586 1.0000 120 chr3L:15670578-15670698 1.0000 120 chrX:7552268-7552388 1.0000 120 chrX:12090326-12090446 1.0000 120 chr2L:1456992-1457112 1.0000 120 chr2L:5365911-5366031 1.0000 120 chr3L:15732198-15732318 1.0000 120 chrX:14629577-14629697 1.0000 120 chr3R:10626162-10626282 1.0000 120 chr3L:18838006-18838126 1.0000 120 chr3L:14274796-14274916 1.0000 120 chr3R:6751893-6752013 1.0000 120 chr3R:29541510-29541630 1.0000 120 chrX:7166470-7166590 1.0000 120 chr3L:8834597-8834717 1.0000 120 chr2R:18675633-18675753 1.0000 120 chr3R:8197280-8197400 1.0000 120 chr3L:6978141-6978261 1.0000 120 chr3R:30918974-30919094 1.0000 120 chr3R:29547711-29547831 1.0000 120 chrX:2050788-2050908 1.0000 120 chr2L:8165937-8166057 1.0000 120 chr3R:9349494-9349614 1.0000 120 chr3R:10354104-10354224 1.0000 120 chr3L:16056363-16056483 1.0000 120 chr3R:11780844-11780964 1.0000 120 chr2R:17084279-17084399 1.0000 120 chr2L:11470060-11470180 1.0000 120 chr3L:4272310-4272430 1.0000 120 chr3L:1431774-1431894 1.0000 120 chr2R:6607639-6607759 1.0000 120 chrX:5604296-5604416 1.0000 120 chr2L:18906750-18906870 1.0000 120 chr3R:26539288-26539408 1.0000 120 chr2L:7526182-7526302 1.0000 120 chr3L:22130361-22130481 1.0000 120 chrX:7892612-7892732 1.0000 120 chr2L:5042255-5042375 1.0000 120 chr3R:29696517-29696637 1.0000 120 chr3R:23738090-23738210 1.0000 120 chr2R:13470231-13470351 1.0000 120 chr3R:10651067-10651187 1.0000 120 chr3R:4861287-4861407 1.0000 120 chr2L:6818464-6818584 1.0000 120 chr2R:6196626-6196746 1.0000 120 chr3L:5017707-5017827 1.0000 120 chr3R:19935352-19935472 1.0000 120 chr3L:5994264-5994384 1.0000 120 chr3R:31704672-31704792 1.0000 120 chrX:3359015-3359135 1.0000 120 chrX:19839258-19839378 1.0000 120 chr3L:11355615-11355735 1.0000 120 chrX:12940046-12940166 1.0000 120 chr3L:16013328-16013448 1.0000 120 chrX:12744409-12744529 1.0000 120 chr3R:28586958-28587078 1.0000 120 chr3R:23134848-23134968 1.0000 120 chr3R:23159465-23159585 1.0000 120 chr2L:20204771-20204891 1.0000 120 chr2R:16515160-16515280 1.0000 120 chr3L:12677678-12677798 1.0000 120 chr2L:4365052-4365172 1.0000 120 chr3R:30865561-30865681 1.0000 120 chr2L:7293587-7293707 1.0000 120 chr2R:18585043-18585163 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG15696/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG15696.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.338 C 0.163 G 0.165 T 0.334 Background letter frequencies (from file dataset with add-one prior applied): A 0.338 C 0.163 G 0.165 T 0.334 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCAAACAA MEME-1 width = 8 sites = 38 llr = 325 E-value = 2.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:aaa:99 pos.-specific C 18:::8:: probability G 8:::::11 matrix T :2:::2:: bits 2.6 2.4 2.1 1.8 ** Relative 1.6 ** *** Entropy 1.3 ******** (12.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCAAACAA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5604296-5604416 82 1.93e-05 GCTGTTGCTT GCAAACAA TTTTGTTGCT chr3L:8834597-8834717 112 1.93e-05 GGAAGTAAGT GCAAACAA T chr3R:6664432-6664552 110 1.93e-05 CCGCTCGCGG GCAAACAA ACT chr3R:5320777-5320897 93 1.93e-05 GCCAACTTGA GCAAACAA ACAGCAGTAA chr3R:14484695-14484815 38 1.93e-05 TACATGGCGG GCAAACAA GAAAACACAT chr3R:8850774-8850894 87 1.93e-05 ATTTTCCAAG GCAAACAA GGAGTGAGGG chrX:12119483-12119603 40 1.93e-05 ATATGTACTC GCAAACAA GGACGAGTGC chr2L:3584439-3584559 106 1.93e-05 TCTCGAGCGG GCAAACAA CAAATGA chr3L:14447072-14447192 75 1.93e-05 CAAGTGACGA GCAAACAA CTCAACTTCA chrX:9729747-9729867 70 1.93e-05 aaaccaacaa gcaaacaa acaaacataa chr2R:11403183-11403303 76 1.93e-05 AAAGTAGAAG GCAAACAA ACTGGATGTT chr3L:6312186-6312306 27 1.93e-05 CGAGCTAAGC Gcaaacaa acaaacaagc chr3L:7943182-7943302 33 1.93e-05 TTGCACTTAT GCAAACAA TTACAAACTG chr3R:4861287-4861407 86 2.88e-05 aagcaaacag gcaaacaG AAGGGGATCA chrX:19765593-19765713 81 2.88e-05 AAAAAAAAAT GCAAACAG TTAGGTTAAC chr3R:30918974-30919094 61 6.84e-05 TGGTTGCTCG GCAAATAA TAGAATGttg chr3L:14274796-14274916 1 6.84e-05 . gcaaaTAA GAGAATAGAG chr3R:29548888-29549008 95 6.84e-05 CATTTGCCAT GCAAATAA GCCCGGCTTC chr2R:25098464-25098584 96 6.84e-05 CACACACAAA GCAAATAA ATAAAGTGCA chr2L:21111995-21112115 53 6.84e-05 TAACTATAAG GCAAATAA GCGAAGAGAA chr3L:4992228-4992348 38 6.84e-05 GGTGCCAATA GCAAATAA GTAAATATTT chr2L:8548247-8548367 55 6.84e-05 GAATTTTTGG GCAAATAA GAAAGCAAAG chr2L:8276391-8276511 12 7.78e-05 CAATCGAAAG GCAAACGA GGAAAGAAAC chr2L:1557152-1557272 38 7.78e-05 ACCAATATCA GCAAACGA AATTATCACA chr3R:26539288-26539408 51 1.37e-04 AAATAAACAA GTAAACAA GCCAGCAGCA chr2L:8165937-8166057 50 1.37e-04 GTAAACCACA CCAAACAA ACGGCTTGGC chr2R:8177300-8177420 84 1.37e-04 AATAATGAAA GTAAACAA CAAGTGATTG chr3R:30812101-30812221 18 1.37e-04 CATTGGCTTC CCAAACAA TCCAAGTATC chr3R:14589589-14589709 11 1.37e-04 CCAGCAGCAG CCAAACAA ATACGTTTGC chr2L:9189451-9189571 105 1.37e-04 CGACAATAAA GTAAACAA ACTGAAAT chr3L:11345695-11345815 43 1.37e-04 TTAGGCGTAT GTAAACAA ATTCGAATTT chr3L:13259782-13259902 53 1.37e-04 GCCGGAACAA GTAAACAA GCCCATAAAT chr3R:12113830-12113950 21 1.37e-04 TCTGTAAACA GTAAACAA GGCCAACTGA chrX:7556370-7556490 36 1.46e-04 GCATTTAGAT GCCAACAA GATATAATAT chr3L:6978141-6978261 8 1.86e-04 GTTACTC ACAAACAA ATATAGTGCA chr3R:21857678-21857798 39 1.86e-04 TATCTGCTTT ACAAACAA ATGTATTGTT chrX:12276715-12276835 54 1.86e-04 AGTGCAAACT ACAAACAA GCTATAACAA chr2R:20027197-20027317 109 2.05e-04 CGCATCCTTA GCAAATAG TATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5604296-5604416 1.9e-05 81_[+1]_31 chr3L:8834597-8834717 1.9e-05 111_[+1]_1 chr3R:6664432-6664552 1.9e-05 109_[+1]_3 chr3R:5320777-5320897 1.9e-05 92_[+1]_20 chr3R:14484695-14484815 1.9e-05 37_[+1]_75 chr3R:8850774-8850894 1.9e-05 86_[+1]_26 chrX:12119483-12119603 1.9e-05 39_[+1]_73 chr2L:3584439-3584559 1.9e-05 105_[+1]_7 chr3L:14447072-14447192 1.9e-05 74_[+1]_38 chrX:9729747-9729867 1.9e-05 69_[+1]_43 chr2R:11403183-11403303 1.9e-05 75_[+1]_37 chr3L:6312186-6312306 1.9e-05 26_[+1]_86 chr3L:7943182-7943302 1.9e-05 32_[+1]_80 chr3R:4861287-4861407 2.9e-05 85_[+1]_27 chrX:19765593-19765713 2.9e-05 80_[+1]_32 chr3R:30918974-30919094 6.8e-05 60_[+1]_52 chr3L:14274796-14274916 6.8e-05 [+1]_112 chr3R:29548888-29549008 6.8e-05 94_[+1]_18 chr2R:25098464-25098584 6.8e-05 95_[+1]_17 chr2L:21111995-21112115 6.8e-05 52_[+1]_60 chr3L:4992228-4992348 6.8e-05 37_[+1]_75 chr2L:8548247-8548367 6.8e-05 54_[+1]_58 chr2L:8276391-8276511 7.8e-05 11_[+1]_101 chr2L:1557152-1557272 7.8e-05 37_[+1]_75 chr3R:26539288-26539408 0.00014 50_[+1]_62 chr2L:8165937-8166057 0.00014 49_[+1]_63 chr2R:8177300-8177420 0.00014 83_[+1]_29 chr3R:30812101-30812221 0.00014 17_[+1]_95 chr3R:14589589-14589709 0.00014 10_[+1]_102 chr2L:9189451-9189571 0.00014 104_[+1]_8 chr3L:11345695-11345815 0.00014 42_[+1]_70 chr3L:13259782-13259902 0.00014 52_[+1]_60 chr3R:12113830-12113950 0.00014 20_[+1]_92 chrX:7556370-7556490 0.00015 35_[+1]_77 chr3L:6978141-6978261 0.00019 7_[+1]_105 chr3R:21857678-21857798 0.00019 38_[+1]_74 chrX:12276715-12276835 0.00019 53_[+1]_59 chr2R:20027197-20027317 0.0002 108_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAAACAA width=8 seqs=38 chrX:5604296-5604416 ( 82) GCAAACAA 1 chr3L:8834597-8834717 ( 112) GCAAACAA 1 chr3R:6664432-6664552 ( 110) GCAAACAA 1 chr3R:5320777-5320897 ( 93) GCAAACAA 1 chr3R:14484695-14484815 ( 38) GCAAACAA 1 chr3R:8850774-8850894 ( 87) GCAAACAA 1 chrX:12119483-12119603 ( 40) GCAAACAA 1 chr2L:3584439-3584559 ( 106) GCAAACAA 1 chr3L:14447072-14447192 ( 75) GCAAACAA 1 chrX:9729747-9729867 ( 70) GCAAACAA 1 chr2R:11403183-11403303 ( 76) GCAAACAA 1 chr3L:6312186-6312306 ( 27) GCAAACAA 1 chr3L:7943182-7943302 ( 33) GCAAACAA 1 chr3R:4861287-4861407 ( 86) GCAAACAG 1 chrX:19765593-19765713 ( 81) GCAAACAG 1 chr3R:30918974-30919094 ( 61) GCAAATAA 1 chr3L:14274796-14274916 ( 1) GCAAATAA 1 chr3R:29548888-29549008 ( 95) GCAAATAA 1 chr2R:25098464-25098584 ( 96) GCAAATAA 1 chr2L:21111995-21112115 ( 53) GCAAATAA 1 chr3L:4992228-4992348 ( 38) GCAAATAA 1 chr2L:8548247-8548367 ( 55) GCAAATAA 1 chr2L:8276391-8276511 ( 12) GCAAACGA 1 chr2L:1557152-1557272 ( 38) GCAAACGA 1 chr3R:26539288-26539408 ( 51) GTAAACAA 1 chr2L:8165937-8166057 ( 50) CCAAACAA 1 chr2R:8177300-8177420 ( 84) GTAAACAA 1 chr3R:30812101-30812221 ( 18) CCAAACAA 1 chr3R:14589589-14589709 ( 11) CCAAACAA 1 chr2L:9189451-9189571 ( 105) GTAAACAA 1 chr3L:11345695-11345815 ( 43) GTAAACAA 1 chr3L:13259782-13259902 ( 53) GTAAACAA 1 chr3R:12113830-12113950 ( 21) GTAAACAA 1 chrX:7556370-7556490 ( 36) GCCAACAA 1 chr3L:6978141-6978261 ( 8) ACAAACAA 1 chr3R:21857678-21857798 ( 39) ACAAACAA 1 chrX:12276715-12276835 ( 54) ACAAACAA 1 chr2R:20027197-20027317 ( 109) GCAAATAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4344 E= 2.9e-001 -210 -105 235 -1189 -1189 237 -1189 -108 152 -263 -1189 -1189 156 -1189 -1189 -1189 156 -1189 -1189 -1189 -1189 228 -1189 -67 149 -1189 -164 -1189 144 -1189 -106 -1189 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 2.9e-001 0.078947 0.078947 0.842105 0.000000 0.000000 0.842105 0.000000 0.157895 0.973684 0.026316 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.789474 0.000000 0.210526 0.947368 0.000000 0.052632 0.000000 0.921053 0.000000 0.078947 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 regular expression -------------------------------------------------------------------------------- GCAAA[CT]AA -------------------------------------------------------------------------------- Time 7.52 secs. ******************************************************************************** ******************************************************************************** MOTIF DTRTTTGC MEME-2 width = 8 sites = 77 llr = 561 E-value = 5.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif DTRTTTGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3:6:::3: pos.-specific C 11:::::a probability G 2:4:1:7: matrix T 49:a9a:: bits 2.6 * 2.4 * 2.1 * 1.8 * Relative 1.6 * * * Entropy 1.3 * * *** (10.5 bits) 1.0 * ***** 0.8 ******* 0.5 ******* 0.3 ******* 0.0 -------- Multilevel TTATTTGC consensus A G A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRTTTGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19839258-19839378 65 2.76e-05 TTTACGACTC TTGTTTGC ATATTTGCAT chrX:2050788-2050908 46 2.76e-05 TCATTGTTTG TTGTTTGC TGCGGATTGT chr2R:18675633-18675753 80 2.76e-05 GGTCCGGATT GTGTTTGC GCATAAATTG chrX:7166470-7166590 104 2.76e-05 ACTCAAAAGT TTGTTTGC TGGACGTGC chr2R:12458264-12458384 52 2.76e-05 GCCATCTGAA TTGTTTGC TTTGGGACTT chr2R:7691616-7691736 41 2.76e-05 GTTTAACACC GTGTTTGC AGTTCGTGTT chr3R:29548888-29549008 42 2.76e-05 TATTTATGAT TTGTTTGC TCATCGGCTG chr2L:17262370-17262490 104 2.76e-05 CAGTTTGTTG TTGTTTGC TTAGACAGT chr3R:30812101-30812221 41 2.76e-05 GTATCTTGCT TTGTTTGC AGTTCTTGAG chr3L:3628078-3628198 51 2.76e-05 TTTTCCCGGC TTGTTTGC CTCAATTGTT chrX:12276715-12276835 87 2.76e-05 ATACATCAAG GTGTTTGC ATTACATTAG chr3R:16904986-16905106 82 2.76e-05 GCTTGTTTAT TTGTTTGC CTTCGATGCC chr3R:31704672-31704792 75 1.03e-04 ATTCAACTGC TTATTTGC CTTATCCTAA chr2L:6818464-6818584 18 1.03e-04 TCGGAGCAAC TTATTTGC TTTCTGCTGG chr2L:5042255-5042375 107 1.03e-04 TGATTATATT TTATTTGC TTTTCA chr3L:16056363-16056483 41 1.03e-04 GTCAACATCA ATGTTTGC TTGATAAATA chr3L:14274796-14274916 30 1.03e-04 GAAATATTTA TTATTTGC TTATAAGGCC chr2R:6528068-6528188 111 1.03e-04 AACCACTGAG GTATTTGC AT chr3R:23133687-23133807 64 1.03e-04 GGCCAAAGGC TTATTTGC CCATGCTTAC chr3L:13622907-13623027 76 1.03e-04 TTTGTGTTTC GTATTTGC ACTGGGCAAA chr3L:6840004-6840124 108 1.03e-04 TTTTAAATTA TTATTTGC CTTTG chr3R:31706975-31707095 50 1.03e-04 AATCACAAAA GTATTTGC ATTATTTGAT chr3L:13259782-13259902 74 1.03e-04 CATAAATAAA TTATTTGC TTAGGAGCAC chr3R:11351438-11351558 83 1.03e-04 ATTACAGTTC GTATTTGC TCTTATCGAC chr2L:15324248-15324368 85 1.03e-04 ACAAAATGGG TTATTTGC CCAGTCAAAC chr3L:12677678-12677798 39 1.41e-04 TCCTAAGTAA ATATTTGC ACAGAGCGGC chr3L:11355615-11355735 46 1.41e-04 AAGAGCGTCA ATATTTGC CCCAAAATAA chr2L:7277966-7278086 102 1.41e-04 CCAGTATCCA ATATTTGC ACAAGTTAAT chr2R:18202733-18202853 48 1.41e-04 TTGTTTTCGT ATATTTGC GCTTGGGCTC chr3L:6589800-6589920 113 1.41e-04 AATATATTAT ATATTTGC chr3L:973504-973624 51 1.41e-04 GACAATCTAA ATATTTGC CTTGGTTCCC chr3L:5017707-5017827 75 1.50e-04 TTTCTGTGTA CTGTTTGC TACCCCTCCC chr3R:23134848-23134968 57 1.64e-04 GCTAAATAAT GTGTGTGC CTTGTAAGTG chr3R:5327987-5328107 43 1.64e-04 AAATATTTAT GTGTGTGC AAGCAGTGAA chrX:12119483-12119603 106 1.64e-04 gtgtgcgtgt gtgtgtgc gtgtgcg chr2L:8165937-8166057 68 1.82e-04 ACGGCTTGGC CTATTTGC TTATCTTATT chr2R:8177300-8177420 1 1.82e-04 . CTATTTGC AGGTGCTTCC chr2L:14586816-14586936 75 1.82e-04 AAATAATTTT CTATTTGC TTAAATTTAT chr3R:28586958-28587078 88 2.19e-04 ACTCAAATCC TTATGTGC ACTTCTAATA chr2L:18906750-18906870 102 2.19e-04 TAGTACTAGT GTATGTGC CTTGAATTTC chrX:7552268-7552388 12 2.19e-04 TGGACCGAAA ATGTGTGC AACATATAAT chrX:17872451-17872571 4 2.19e-04 AAG TTATGTGC ATTGTAACGA chr3R:21001273-21001393 50 2.76e-04 TAGGTCCTAT GTGTTTAC CAGGGTAAAT chr3R:15667249-15667369 4 2.76e-04 CCT TTGTTTAC CTGCATTTTC chr2L:3570662-3570782 109 2.76e-04 GATTTCTAAT TTGTTTAC ACTC chr3L:9015291-9015411 15 2.76e-04 CTTAGAGCCT TTGTTTAC CGAACAAACT chr3L:1358417-1358537 82 2.76e-04 TTTCACTCAA GTGTTTAC TCTTCAAATG chr3L:11345695-11345815 59 2.76e-04 AAATTCGAAT TTGTTTAC ATGCACACAT chr2R:6037832-6037952 59 3.08e-04 GCTCGAAGGG ATATGTGC GGCCCTCCAC chrX:7169603-7169723 43 3.08e-04 CGTTTAGTAA ATATGTGC TTTAGGCTCT chr3R:20548393-20548513 39 3.08e-04 AGCTCATAAA ATATGTGC TCAAGTCTAT chr2L:20204771-20204891 79 4.62e-04 aaaacaagaa ttatttac atggtgcgaa chr3R:23738090-23738210 1 4.62e-04 . TTATTTAC GCCGGTCAAA chr3R:4947885-4948005 35 4.62e-04 ATGTACATAT TTATTTAC GAATGTCGGG chr3L:3978071-3978191 1 4.62e-04 . GTATTTAC AATTAACCCT chr3L:15802807-15802927 111 4.62e-04 GGACTTAAAA ATGTTTAC TT chr3L:12444223-12444343 95 4.62e-04 GTAAGACCAT TTATTTAC TTAGCTTTAA chr3L:15847421-15847541 72 4.62e-04 gagtatacga gtatTTAC CAAAAAAGGC chr2R:14810361-14810481 62 4.62e-04 CACTTCCGAA ATGTTTAC TTGACTTATA chrX:19765593-19765713 4 4.62e-04 AAT ATGTTTAC TAAACACAAA chr2R:16515160-16515280 83 5.03e-04 TTAGTTGGAA ACGTTTGC ACTATATTAT chr3R:19935352-19935472 46 5.03e-04 ATTAGACAAG TCATTTGC AGACGGCATA chr3L:4272310-4272430 89 5.03e-04 CTTTATTTAT TCATTTGC CTGTTTATTT chr3R:6949441-6949561 96 5.03e-04 TTATTCTAAA TCATTTGC TTTGTAGCGT chr3R:14589589-14589709 21 5.03e-04 CCAAACAAAT ACGTTTGC ACTGGGAGAA chr3R:19246466-19246586 37 6.08e-04 GCCAATGTAA ATATTTAC TATTTTCAGT chr2L:22037021-22037141 43 6.08e-04 CATCTGGCAA ATATTTAC ATAAGTCGGG chr3L:16743996-16744116 43 6.08e-04 AAACATACAG TTCTTTGC AGTAGTTATC chr2L:5239537-5239657 44 6.08e-04 CCATACATAC ATATTTAC TTTGAAATCC chr3L:14447072-14447192 98 6.08e-04 CTTCATGCAA ATATTTAC TCCAACAGTT chrX:4458654-4458774 99 6.08e-04 TCGTTTATCT GTCTTTGC TTTGAGAGAT chr3L:4992228-4992348 50 6.08e-04 AAATAAGTAA ATATTTAC TATTTACTCT chrX:3354517-3354637 66 6.08e-04 GCCACTGTAA ATATTTAC ATGTGCAGCC chr3L:15320337-15320457 42 6.36e-04 CTCCATTATT ACATTTGC GATTTTTGTG chr2R:17084279-17084399 19 6.73e-04 GTTTCAGTTT CTGTTTAC CGTCGCACTC chr2L:3584439-3584559 20 6.73e-04 ATTTCCTTTC ATCTTTGC CGTAGGTCAA chr2R:16479733-16479853 65 6.73e-04 ATTGGTGTTT CTGTTTAC AACTGGCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRTTTGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19839258-19839378 2.8e-05 64_[+2]_48 chrX:2050788-2050908 2.8e-05 45_[+2]_67 chr2R:18675633-18675753 2.8e-05 79_[+2]_33 chrX:7166470-7166590 2.8e-05 103_[+2]_9 chr2R:12458264-12458384 2.8e-05 51_[+2]_61 chr2R:7691616-7691736 2.8e-05 40_[+2]_72 chr3R:29548888-29549008 2.8e-05 41_[+2]_71 chr2L:17262370-17262490 2.8e-05 103_[+2]_9 chr3R:30812101-30812221 2.8e-05 40_[+2]_72 chr3L:3628078-3628198 2.8e-05 50_[+2]_62 chrX:12276715-12276835 2.8e-05 86_[+2]_26 chr3R:16904986-16905106 2.8e-05 81_[+2]_31 chr3R:31704672-31704792 0.0001 74_[+2]_38 chr2L:6818464-6818584 0.0001 17_[+2]_95 chr2L:5042255-5042375 0.0001 106_[+2]_6 chr3L:16056363-16056483 0.0001 40_[+2]_72 chr3L:14274796-14274916 0.0001 29_[+2]_83 chr2R:6528068-6528188 0.0001 110_[+2]_2 chr3R:23133687-23133807 0.0001 63_[+2]_49 chr3L:13622907-13623027 0.0001 75_[+2]_37 chr3L:6840004-6840124 0.0001 107_[+2]_5 chr3R:31706975-31707095 0.0001 49_[+2]_63 chr3L:13259782-13259902 0.0001 73_[+2]_39 chr3R:11351438-11351558 0.0001 82_[+2]_30 chr2L:15324248-15324368 0.0001 84_[+2]_28 chr3L:12677678-12677798 0.00014 38_[+2]_74 chr3L:11355615-11355735 0.00014 45_[+2]_67 chr2L:7277966-7278086 0.00014 101_[+2]_11 chr2R:18202733-18202853 0.00014 47_[+2]_65 chr3L:6589800-6589920 0.00014 112_[+2] chr3L:973504-973624 0.00014 50_[+2]_62 chr3L:5017707-5017827 0.00015 74_[+2]_38 chr3R:23134848-23134968 0.00016 56_[+2]_56 chr3R:5327987-5328107 0.00016 42_[+2]_70 chrX:12119483-12119603 0.00016 105_[+2]_7 chr2L:8165937-8166057 0.00018 67_[+2]_45 chr2R:8177300-8177420 0.00018 [+2]_112 chr2L:14586816-14586936 0.00018 74_[+2]_38 chr3R:28586958-28587078 0.00022 87_[+2]_25 chr2L:18906750-18906870 0.00022 101_[+2]_11 chrX:7552268-7552388 0.00022 11_[+2]_101 chrX:17872451-17872571 0.00022 3_[+2]_109 chr3R:21001273-21001393 0.00028 49_[+2]_63 chr3R:15667249-15667369 0.00028 3_[+2]_109 chr2L:3570662-3570782 0.00028 108_[+2]_4 chr3L:9015291-9015411 0.00028 14_[+2]_98 chr3L:1358417-1358537 0.00028 81_[+2]_31 chr3L:11345695-11345815 0.00028 58_[+2]_54 chr2R:6037832-6037952 0.00031 58_[+2]_54 chrX:7169603-7169723 0.00031 42_[+2]_70 chr3R:20548393-20548513 0.00031 38_[+2]_74 chr2L:20204771-20204891 0.00046 78_[+2]_34 chr3R:23738090-23738210 0.00046 [+2]_112 chr3R:4947885-4948005 0.00046 34_[+2]_78 chr3L:3978071-3978191 0.00046 [+2]_112 chr3L:15802807-15802927 0.00046 110_[+2]_2 chr3L:12444223-12444343 0.00046 94_[+2]_18 chr3L:15847421-15847541 0.00046 71_[+2]_41 chr2R:14810361-14810481 0.00046 61_[+2]_51 chrX:19765593-19765713 0.00046 3_[+2]_109 chr2R:16515160-16515280 0.0005 82_[+2]_30 chr3R:19935352-19935472 0.0005 45_[+2]_67 chr3L:4272310-4272430 0.0005 88_[+2]_24 chr3R:6949441-6949561 0.0005 95_[+2]_17 chr3R:14589589-14589709 0.0005 20_[+2]_92 chr3R:19246466-19246586 0.00061 36_[+2]_76 chr2L:22037021-22037141 0.00061 42_[+2]_70 chr3L:16743996-16744116 0.00061 42_[+2]_70 chr2L:5239537-5239657 0.00061 43_[+2]_69 chr3L:14447072-14447192 0.00061 97_[+2]_15 chrX:4458654-4458774 0.00061 98_[+2]_14 chr3L:4992228-4992348 0.00061 49_[+2]_63 chrX:3354517-3354637 0.00061 65_[+2]_47 chr3L:15320337-15320457 0.00064 41_[+2]_71 chr2R:17084279-17084399 0.00067 18_[+2]_94 chr2L:3584439-3584559 0.00067 19_[+2]_93 chr2R:16479733-16479853 0.00067 64_[+2]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRTTTGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DTRTTTGC width=8 seqs=77 chrX:19839258-19839378 ( 65) TTGTTTGC 1 chrX:2050788-2050908 ( 46) TTGTTTGC 1 chr2R:18675633-18675753 ( 80) GTGTTTGC 1 chrX:7166470-7166590 ( 104) TTGTTTGC 1 chr2R:12458264-12458384 ( 52) TTGTTTGC 1 chr2R:7691616-7691736 ( 41) GTGTTTGC 1 chr3R:29548888-29549008 ( 42) TTGTTTGC 1 chr2L:17262370-17262490 ( 104) TTGTTTGC 1 chr3R:30812101-30812221 ( 41) TTGTTTGC 1 chr3L:3628078-3628198 ( 51) TTGTTTGC 1 chrX:12276715-12276835 ( 87) GTGTTTGC 1 chr3R:16904986-16905106 ( 82) TTGTTTGC 1 chr3R:31704672-31704792 ( 75) TTATTTGC 1 chr2L:6818464-6818584 ( 18) TTATTTGC 1 chr2L:5042255-5042375 ( 107) TTATTTGC 1 chr3L:16056363-16056483 ( 41) ATGTTTGC 1 chr3L:14274796-14274916 ( 30) TTATTTGC 1 chr2R:6528068-6528188 ( 111) GTATTTGC 1 chr3R:23133687-23133807 ( 64) TTATTTGC 1 chr3L:13622907-13623027 ( 76) GTATTTGC 1 chr3L:6840004-6840124 ( 108) TTATTTGC 1 chr3R:31706975-31707095 ( 50) GTATTTGC 1 chr3L:13259782-13259902 ( 74) TTATTTGC 1 chr3R:11351438-11351558 ( 83) GTATTTGC 1 chr2L:15324248-15324368 ( 85) TTATTTGC 1 chr3L:12677678-12677798 ( 39) ATATTTGC 1 chr3L:11355615-11355735 ( 46) ATATTTGC 1 chr2L:7277966-7278086 ( 102) ATATTTGC 1 chr2R:18202733-18202853 ( 48) ATATTTGC 1 chr3L:6589800-6589920 ( 113) ATATTTGC 1 chr3L:973504-973624 ( 51) ATATTTGC 1 chr3L:5017707-5017827 ( 75) CTGTTTGC 1 chr3R:23134848-23134968 ( 57) GTGTGTGC 1 chr3R:5327987-5328107 ( 43) GTGTGTGC 1 chrX:12119483-12119603 ( 106) GTGTGTGC 1 chr2L:8165937-8166057 ( 68) CTATTTGC 1 chr2R:8177300-8177420 ( 1) CTATTTGC 1 chr2L:14586816-14586936 ( 75) CTATTTGC 1 chr3R:28586958-28587078 ( 88) TTATGTGC 1 chr2L:18906750-18906870 ( 102) GTATGTGC 1 chrX:7552268-7552388 ( 12) ATGTGTGC 1 chrX:17872451-17872571 ( 4) TTATGTGC 1 chr3R:21001273-21001393 ( 50) GTGTTTAC 1 chr3R:15667249-15667369 ( 4) TTGTTTAC 1 chr2L:3570662-3570782 ( 109) TTGTTTAC 1 chr3L:9015291-9015411 ( 15) TTGTTTAC 1 chr3L:1358417-1358537 ( 82) GTGTTTAC 1 chr3L:11345695-11345815 ( 59) TTGTTTAC 1 chr2R:6037832-6037952 ( 59) ATATGTGC 1 chrX:7169603-7169723 ( 43) ATATGTGC 1 chr3R:20548393-20548513 ( 39) ATATGTGC 1 chr2L:20204771-20204891 ( 79) TTATTTAC 1 chr3R:23738090-23738210 ( 1) TTATTTAC 1 chr3R:4947885-4948005 ( 35) TTATTTAC 1 chr3L:3978071-3978191 ( 1) GTATTTAC 1 chr3L:15802807-15802927 ( 111) ATGTTTAC 1 chr3L:12444223-12444343 ( 95) TTATTTAC 1 chr3L:15847421-15847541 ( 72) GTATTTAC 1 chr2R:14810361-14810481 ( 62) ATGTTTAC 1 chrX:19765593-19765713 ( 4) ATGTTTAC 1 chr2R:16515160-16515280 ( 83) ACGTTTGC 1 chr3R:19935352-19935472 ( 46) TCATTTGC 1 chr3L:4272310-4272430 ( 89) TCATTTGC 1 chr3R:6949441-6949561 ( 96) TCATTTGC 1 chr3R:14589589-14589709 ( 21) ACGTTTGC 1 chr3R:19246466-19246586 ( 37) ATATTTAC 1 chr2L:22037021-22037141 ( 43) ATATTTAC 1 chr3L:16743996-16744116 ( 43) TTCTTTGC 1 chr2L:5239537-5239657 ( 44) ATATTTAC 1 chr3L:14447072-14447192 ( 98) ATATTTAC 1 chrX:4458654-4458774 ( 99) GTCTTTGC 1 chr3L:4992228-4992348 ( 50) ATATTTAC 1 chrX:3354517-3354637 ( 66) ATATTTAC 1 chr3L:15320337-15320457 ( 42) ACATTTGC 1 chr2R:17084279-17084399 ( 19) CTGTTTAC 1 chr2L:3584439-3584559 ( 20) ATCTTTGC 1 chr2R:16479733-16479853 ( 65) CTGTTTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRTTTGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.42632 E= 5.9e+000 -12 -106 34 27 -1291 -106 -1291 146 72 -206 129 -1291 -1291 -1291 -1291 158 -1291 -1291 -34 138 -1291 -1291 -1291 158 -18 -1291 209 -1291 -1291 262 -1291 -1291 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRTTTGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 77 E= 5.9e+000 0.311688 0.077922 0.207792 0.402597 0.000000 0.077922 0.000000 0.922078 0.558442 0.038961 0.402597 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.129870 0.870130 0.000000 0.000000 0.000000 1.000000 0.298701 0.000000 0.701299 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTRTTTGC MEME-2 regular expression -------------------------------------------------------------------------------- [TAG]T[AG]TTT[GA]C -------------------------------------------------------------------------------- Time 13.79 secs. ******************************************************************************** ******************************************************************************** MOTIF GSAHKCGG MEME-3 width = 8 sites = 21 llr = 198 E-value = 1.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSAHKCGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::74:::: pos.-specific C :6:3:a:2 probability G a43:4:a8 matrix T :::36::: bits 2.6 * ** 2.4 * ** 2.1 * ** 1.8 * *** Relative 1.6 ** *** Entropy 1.3 ** *** (13.6 bits) 1.0 *** **** 0.8 *** **** 0.5 *** **** 0.3 ******** 0.0 -------- Multilevel GCAATCGG consensus GGTG C sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSAHKCGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:6840004-6840124 52 1.61e-06 TGTTTTGTTC GCGCGCGG CAAAAGTCAA chr3R:23738090-23738210 83 9.87e-06 CCGGGCTGTG GCACTCGG ATGCGATACC chr2L:7277966-7278086 20 9.87e-06 AAAGGGCAAG GCACTCGG CAAAAATATT chr3L:14447072-14447192 28 9.87e-06 AAAACAAAGT GCGAGCGG GAGGGCAAAG chr3L:13259782-13259902 88 9.87e-06 TTGCTTAGGA GCACTCGG CAGTTGgacg chr3R:26539288-26539408 66 2.66e-05 CAAGCCAGCA GCAATCGG ACATAAACAT chr3R:14484695-14484815 80 2.66e-05 GTTTTGACCG GGAAGCGG GGACCCCAGA chr2L:12589016-12589136 74 2.66e-05 TATTGATAAG GCGATCGG CACGATATGT chr2L:3548995-3549115 99 2.66e-05 CGTGGGTGAA GGGAGCGG GGCATATAAT chr3R:29548888-29549008 22 3.67e-05 CCATCGTCCA GCATTCGG AGTATTTATG chr2R:19569822-19569942 30 3.67e-05 GACAAGCGAG GGATGCGG CGCATTTGGG chr2L:15741550-15741670 110 3.67e-05 CAGGTGCATC GCATTCGG CGC chrX:17504487-17504607 98 3.67e-05 TTGTAGCTGC GCATTCGG TTCGACAACA chr2L:4378501-4378621 99 4.52e-05 ACAGGTCAAG GGGATCGG AAGATAAGAA chr3R:10599074-10599194 54 4.52e-05 TACAAACTCG GGAATCGG AGAGAGATGG chrX:423510-423630 53 4.52e-05 AACTGTATCG GGAATCGG TTAAGTGACT chr2R:18675055-18675175 42 6.01e-05 GCGATGCGAA GGACGCGC GTAGATAAGG chr2R:16515160-16515280 14 6.33e-05 TCAACCAGTG GCGTGCGC AAGGATTTCT chr2R:18202733-18202853 5 6.33e-05 GTGC GCATGCGC GCACTCATAT chrX:12276715-12276835 12 6.33e-05 acgcacacaA GCGTGCGC AAATATTCGT chr2R:12458264-12458384 6 7.67e-05 CAAAA GGACTCGC GGCTTTTCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSAHKCGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:6840004-6840124 1.6e-06 51_[+3]_61 chr3R:23738090-23738210 9.9e-06 82_[+3]_30 chr2L:7277966-7278086 9.9e-06 19_[+3]_93 chr3L:14447072-14447192 9.9e-06 27_[+3]_85 chr3L:13259782-13259902 9.9e-06 87_[+3]_25 chr3R:26539288-26539408 2.7e-05 65_[+3]_47 chr3R:14484695-14484815 2.7e-05 79_[+3]_33 chr2L:12589016-12589136 2.7e-05 73_[+3]_39 chr2L:3548995-3549115 2.7e-05 98_[+3]_14 chr3R:29548888-29549008 3.7e-05 21_[+3]_91 chr2R:19569822-19569942 3.7e-05 29_[+3]_83 chr2L:15741550-15741670 3.7e-05 109_[+3]_3 chrX:17504487-17504607 3.7e-05 97_[+3]_15 chr2L:4378501-4378621 4.5e-05 98_[+3]_14 chr3R:10599074-10599194 4.5e-05 53_[+3]_59 chrX:423510-423630 4.5e-05 52_[+3]_60 chr2R:18675055-18675175 6e-05 41_[+3]_71 chr2R:16515160-16515280 6.3e-05 13_[+3]_99 chr2R:18202733-18202853 6.3e-05 4_[+3]_108 chrX:12276715-12276835 6.3e-05 11_[+3]_101 chr2R:12458264-12458384 7.7e-05 5_[+3]_107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSAHKCGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSAHKCGG width=8 seqs=21 chr3L:6840004-6840124 ( 52) GCGCGCGG 1 chr3R:23738090-23738210 ( 83) GCACTCGG 1 chr2L:7277966-7278086 ( 20) GCACTCGG 1 chr3L:14447072-14447192 ( 28) GCGAGCGG 1 chr3L:13259782-13259902 ( 88) GCACTCGG 1 chr3R:26539288-26539408 ( 66) GCAATCGG 1 chr3R:14484695-14484815 ( 80) GGAAGCGG 1 chr2L:12589016-12589136 ( 74) GCGATCGG 1 chr2L:3548995-3549115 ( 99) GGGAGCGG 1 chr3R:29548888-29549008 ( 22) GCATTCGG 1 chr2R:19569822-19569942 ( 30) GGATGCGG 1 chr2L:15741550-15741670 ( 110) GCATTCGG 1 chrX:17504487-17504607 ( 98) GCATTCGG 1 chr2L:4378501-4378621 ( 99) GGGATCGG 1 chr3R:10599074-10599194 ( 54) GGAATCGG 1 chrX:423510-423630 ( 53) GGAATCGG 1 chr2R:18675055-18675175 ( 42) GGACGCGC 1 chr2R:16515160-16515280 ( 14) GCGTGCGC 1 chr2R:18202733-18202853 ( 5) GCATGCGC 1 chrX:12276715-12276835 ( 12) GCGTGCGC 1 chr2R:12458264-12458384 ( 6) GGACTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSAHKCGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8981 E= 1.9e+002 -1104 -1104 260 -1104 -1104 192 121 -1104 98 -1104 102 -1104 17 81 -1104 0 -1104 -1104 138 77 -1104 262 -1104 -1104 -1104 -1104 260 -1104 -1104 55 221 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSAHKCGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.9e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.619048 0.380952 0.000000 0.666667 0.000000 0.333333 0.000000 0.380952 0.285714 0.000000 0.333333 0.000000 0.000000 0.428571 0.571429 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.238095 0.761905 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSAHKCGG MEME-3 regular expression -------------------------------------------------------------------------------- G[CG][AG][ATC][TG]CG[GC] -------------------------------------------------------------------------------- Time 19.91 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCCAGC MEME-4 width = 8 sites = 2 llr = 28 E-value = 5.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCCAGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C a:aaa::a probability G :a::::a: matrix T :::::::: bits 2.6 ***** ** 2.4 ***** ** 2.1 ***** ** 1.8 ***** ** Relative 1.6 ******** Entropy 1.3 ******** (19.9 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCCCAGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCAGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:19246466-19246586 99 1.06e-06 TGGTAAACAT CGCCCAGC TGTTTATCCT chr2R:12458264-12458384 36 1.06e-06 CCAACTCACA CGCCCAGC CATCTGAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCAGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:19246466-19246586 1.1e-06 98_[+4]_14 chr2R:12458264-12458384 1.1e-06 35_[+4]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCAGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCCAGC width=8 seqs=2 chr3R:19246466-19246586 ( 99) CGCCCAGC 1 chr2R:12458264-12458384 ( 36) CGCCCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCAGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 5.1e+003 -765 261 -765 -765 -765 -765 260 -765 -765 261 -765 -765 -765 261 -765 -765 -765 261 -765 -765 156 -765 -765 -765 -765 -765 260 -765 -765 261 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCAGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 5.1e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCCAGC MEME-4 regular expression -------------------------------------------------------------------------------- CGCCCAGC -------------------------------------------------------------------------------- Time 25.99 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGTGGGC MEME-5 width = 8 sites = 7 llr = 81 E-value = 5.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGTGGGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A 1::::::: pos.-specific C :a::3::a probability G 9:717aa: matrix T ::39:::: bits 2.6 * *** 2.4 * *** 2.1 * *** 1.8 ** **** Relative 1.6 *** **** Entropy 1.3 *** **** (16.6 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGTGGGC consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGGGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:9015291-9015411 81 1.09e-06 CCCGGTTCCA GCGTGGGC GTTACAAATA chr3R:23134848-23134968 25 2.16e-06 CGTATACACG GCGTCGGC GGCCCAAAAA chr3L:4272310-4272430 22 2.16e-06 ACATCAACTC GCGTCGGC CGTATCTTTT chr2L:5239537-5239657 10 2.69e-06 AGTGGAAAT GCGGGGGC TAAAGGTTGA chr3R:6664432-6664552 78 4.89e-06 GTGCCGAGTG GCTTGGGC TGCATTTGAA chr2R:18202733-18202853 56 4.89e-06 GTATATTTGC GCTTGGGC TCTTATTTGT chr3R:8285724-8285844 63 7.64e-06 AATTCTATAG ACGTGGGC AATTGTTTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGGGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9015291-9015411 1.1e-06 80_[+5]_32 chr3R:23134848-23134968 2.2e-06 24_[+5]_88 chr3L:4272310-4272430 2.2e-06 21_[+5]_91 chr2L:5239537-5239657 2.7e-06 9_[+5]_103 chr3R:6664432-6664552 4.9e-06 77_[+5]_35 chr2R:18202733-18202853 4.9e-06 55_[+5]_57 chr3R:8285724-8285844 7.6e-06 62_[+5]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGGGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGTGGGC width=8 seqs=7 chr3L:9015291-9015411 ( 81) GCGTGGGC 1 chr3R:23134848-23134968 ( 25) GCGTCGGC 1 chr3L:4272310-4272430 ( 22) GCGTCGGC 1 chr2L:5239537-5239657 ( 10) GCGGGGGC 1 chr3R:6664432-6664552 ( 78) GCTTGGGC 1 chr2R:18202733-18202853 ( 56) GCTTGGGC 1 chr3R:8285724-8285844 ( 63) ACGTGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGGGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 5.4e+003 -124 -945 238 -945 -945 262 -945 -945 -945 -945 212 -23 -945 -945 -20 136 -945 81 212 -945 -945 -945 260 -945 -945 -945 260 -945 -945 262 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGGGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 5.4e+003 0.142857 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.714286 0.285714 0.000000 0.000000 0.142857 0.857143 0.000000 0.285714 0.714286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTGGGC MEME-5 regular expression -------------------------------------------------------------------------------- GC[GT]T[GC]GGC -------------------------------------------------------------------------------- Time 32.08 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19765593-19765713 1.85e-02 80_[+1(2.88e-05)]_32 chrX:17872451-17872571 3.03e-01 120 chr3R:8285724-8285844 6.92e-02 62_[+5(7.64e-06)]_50 chr3R:6663073-6663193 8.67e-01 120 chr3R:5761094-5761214 4.09e-02 120 chr3R:12113830-12113950 5.31e-02 120 chr3R:22161763-22161883 1.99e-01 120 chr3R:19340426-19340546 9.60e-01 120 chrX:16205236-16205356 7.96e-01 120 chr3L:7943182-7943302 3.93e-02 32_[+1(1.93e-05)]_80 chr2R:9421205-9421325 5.72e-02 120 chr2L:3853662-3853782 7.89e-01 120 chr3L:14974629-14974749 2.33e-01 120 chr2R:9870577-9870697 4.32e-01 120 chr3R:19343708-19343828 9.12e-01 120 chr3L:15232520-15232640 7.27e-01 120 chrX:8830195-8830315 5.82e-01 120 chr3L:973504-973624 1.18e-01 120 chr3R:23031038-23031158 8.82e-01 120 chr3R:8336260-8336380 9.98e-01 120 chr3L:12453632-12453752 4.99e-01 120 chrX:8444396-8444516 1.45e-01 120 chr3R:22635004-22635124 8.90e-01 120 chr3R:16904986-16905106 6.20e-03 81_[+2(2.76e-05)]_31 chrX:414469-414589 7.31e-01 120 chr3R:16033897-16034017 9.99e-01 120 chrX:9689259-9689379 5.09e-01 120 chr3L:20644806-20644926 8.72e-01 120 chr2L:8548247-8548367 9.40e-02 54_[+1(6.84e-05)]_58 chrX:3354517-3354637 2.16e-01 120 chr2L:15458235-15458355 7.91e-01 120 chr2R:12896100-12896220 9.89e-01 120 chr2R:16479733-16479853 5.41e-02 120 chr2L:15324248-15324368 4.53e-02 120 chr3L:23738611-23738731 3.13e-01 120 chr3R:11351438-11351558 3.32e-01 120 chr2L:3548995-3549115 2.17e-03 98_[+3(2.66e-05)]_14 chr3R:15587633-15587753 8.67e-01 120 chrX:2295169-2295289 7.94e-01 120 chr3R:21825283-21825403 1.23e-01 120 chr3L:13259782-13259902 5.03e-05 87_[+3(9.87e-06)]_25 chrX:12276715-12276835 1.51e-05 11_[+3(6.33e-05)]_67_[+2(2.76e-05)]_\ 26 chr3L:11345695-11345815 3.70e-03 120 chr3R:16630680-16630800 7.91e-01 120 chr3R:30770210-30770330 8.16e-01 120 chr3R:29266647-29266767 7.79e-01 120 chr3L:6312186-6312306 3.62e-02 26_[+1(1.93e-05)]_14_[+1(2.88e-05)]_\ 64 chr2L:9990247-9990367 5.20e-01 120 chr2R:11403183-11403303 2.09e-02 75_[+1(1.93e-05)]_37 chrX:8665762-8665882 8.01e-01 120 chrX:18207709-18207829 4.30e-01 120 chr2L:14586816-14586936 2.74e-01 120 chr3L:3628078-3628198 1.02e-02 50_[+2(2.76e-05)]_62 chr2L:3555812-3555932 7.89e-01 120 chr2L:15486606-15486726 8.34e-01 120 chr2R:14810361-14810481 4.87e-01 120 chr3L:1358417-1358537 1.55e-01 120 chrX:17504487-17504607 8.05e-03 97_[+3(3.67e-05)]_15 chr3L:20687548-20687668 9.71e-01 120 chr3L:4992228-4992348 3.70e-03 37_[+1(6.84e-05)]_75 chrX:16660747-16660867 8.58e-01 120 chr3L:21727144-21727264 4.85e-01 120 chr3L:13049776-13049896 5.72e-01 120 chr2L:2461727-2461847 8.88e-01 120 chr2L:12589016-12589136 3.05e-02 73_[+3(2.66e-05)]_39 chr3R:9035409-9035529 9.05e-01 120 chr3L:15847421-15847541 2.39e-01 120 chrX:423510-423630 2.58e-03 52_[+3(4.52e-05)]_10_[+5(6.45e-05)]_\ 42 chr3L:15315225-15315345 3.91e-01 120 chrX:9729747-9729867 4.88e-02 42_[+1(6.84e-05)]_19_[+1(1.93e-05)]_\ 43 chr2L:8762991-8763111 9.74e-01 120 chr2L:1557152-1557272 2.77e-02 37_[+1(7.78e-05)]_75 chr3L:22162708-22162828 6.45e-01 120 chr2R:20027197-20027317 2.38e-01 120 chr2R:20127312-20127432 1.87e-01 120 chr3R:31706975-31707095 7.77e-02 120 chr2L:3819045-3819165 9.56e-01 120 chrX:7569842-7569962 9.46e-01 120 chr3L:14953003-14953123 9.98e-01 120 chrX:15674487-15674607 3.96e-01 120 chrX:4458654-4458774 5.87e-01 120 chr3L:14971969-14972089 4.86e-01 120 chr3L:14447072-14447192 4.96e-05 27_[+3(9.87e-06)]_39_[+1(1.93e-05)]_\ 38 chr2L:9189451-9189571 8.66e-04 120 chr2L:15741550-15741670 1.45e-01 109_[+3(3.67e-05)]_3 chr2L:3584439-3584559 1.11e-03 105_[+1(1.93e-05)]_7 chr2L:21111995-21112115 2.24e-01 52_[+1(6.84e-05)]_60 chr2L:8276391-8276511 1.65e-02 11_[+1(7.78e-05)]_101 chr3L:15330195-15330315 7.36e-01 120 chr3L:19179586-19179706 6.70e-01 120 chrX:18946950-18947070 8.79e-01 120 chr3R:14589589-14589709 8.17e-03 120 chr2L:18895198-18895318 2.70e-02 85_[+5(4.23e-05)]_27 chr3L:7957066-7957186 9.85e-01 120 chrX:19323171-19323291 3.64e-01 120 chr2L:12641563-12641683 1.25e-01 120 chr3R:19339349-19339469 9.10e-01 120 chr3R:20276882-20277002 2.88e-01 120 chr3L:3843080-3843200 2.02e-01 120 chrX:3832381-3832501 1.15e-02 120 chr3R:21535477-21535597 3.17e-01 120 chrX:4574060-4574180 1.59e-01 120 chr3L:6589800-6589920 4.14e-01 120 chr2L:8842296-8842416 7.96e-01 120 chrX:4459768-4459888 2.65e-01 120 chr3L:9015291-9015411 4.14e-04 80_[+5(1.09e-06)]_32 chr3L:6834711-6834831 5.36e-01 120 chrX:12119483-12119603 1.02e-04 39_[+1(1.93e-05)]_64_[+5(6.45e-05)]_\ 1 chr3R:30812101-30812221 1.90e-03 40_[+2(2.76e-05)]_72 chr3R:8683398-8683518 7.12e-01 120 chr2R:12910295-12910415 4.29e-02 120 chr3L:12444223-12444343 4.35e-01 120 chr3L:15802807-15802927 6.44e-01 120 chr3R:8850774-8850894 2.76e-02 86_[+1(1.93e-05)]_26 chr2R:14312325-14312445 4.72e-01 120 chr3R:24270188-24270308 9.14e-02 120 chr3R:6949441-6949561 1.77e-01 120 chr2R:6603122-6603242 1.08e-01 120 chr2L:6177326-6177446 6.29e-01 120 chr2L:5239537-5239657 3.82e-03 9_[+5(2.69e-06)]_103 chrX:18208571-18208691 9.94e-01 120 chr3R:20548393-20548513 4.31e-01 120 chr3L:5989511-5989631 7.55e-01 120 chrX:7169603-7169723 3.18e-01 120 chr3L:15320337-15320457 4.13e-01 120 chr3R:21857678-21857798 2.74e-01 120 chr3R:5327987-5328107 3.92e-03 120 chr3L:6840004-6840124 8.14e-06 51_[+3(1.61e-06)]_61 chr3L:14152735-14152855 9.31e-01 120 chr2R:9660226-9660346 9.17e-01 120 chr2R:6037832-6037952 4.95e-02 120 chr3L:14961234-14961354 9.94e-01 120 chr3R:23740806-23740926 4.51e-01 120 chr3L:8713153-8713273 8.84e-01 120 chr2L:3570662-3570782 1.45e-02 120 chr2L:17262370-17262490 9.84e-04 103_[+2(2.76e-05)]_9 chr3L:16743996-16744116 7.59e-01 120 chr3R:19370874-19370994 3.33e-01 120 chr3L:13622907-13623027 3.66e-02 120 chr3L:3978071-3978191 4.53e-01 120 chr2R:8177300-8177420 1.73e-02 120 chr2R:25098464-25098584 1.77e-02 95_[+1(6.84e-05)]_17 chr2L:7277724-7277844 4.97e-01 120 chr2L:7302876-7302996 8.14e-01 120 chr2R:18675055-18675175 2.98e-02 41_[+3(6.01e-05)]_71 chr3R:4947885-4948005 1.72e-02 120 chr2R:22158061-22158181 1.24e-01 120 chr2R:18202733-18202853 2.52e-06 4_[+3(6.33e-05)]_43_[+5(4.89e-06)]_\ 57 chr2L:11326523-11326643 9.29e-01 120 chr2L:7277966-7278086 8.58e-04 19_[+3(9.87e-06)]_93 chr2R:19569822-19569942 1.16e-02 29_[+3(3.67e-05)]_83 chr3R:29548888-29549008 3.04e-07 21_[+3(3.67e-05)]_12_[+2(2.76e-05)]_\ 45_[+1(6.84e-05)]_18 chr2R:20091288-20091408 3.12e-01 120 chr3R:14484695-14484815 2.01e-05 37_[+1(1.93e-05)]_34_[+3(2.66e-05)]_\ 33 chr2L:20935492-20935612 1.57e-01 120 chr2R:18677903-18678023 2.93e-01 120 chrX:3344785-3344905 9.81e-01 120 chrX:457942-458062 8.39e-01 120 chr3R:5320777-5320897 8.40e-03 92_[+1(1.93e-05)]_20 chr3L:11004166-11004286 9.81e-03 120 chrX:382813-382933 9.53e-01 120 chr2L:22037021-22037141 1.97e-02 120 chr3L:11439711-11439831 9.67e-01 120 chr3R:10599074-10599194 2.94e-02 53_[+3(4.52e-05)]_59 chr2R:7691616-7691736 1.89e-02 40_[+2(2.76e-05)]_72 chr3R:23133687-23133807 7.75e-03 120 chrX:7556370-7556490 2.46e-02 120 chr2L:8558718-8558838 1.41e-01 120 chr2L:8787690-8787810 8.41e-01 120 chr3L:590015-590135 8.54e-01 120 chr2R:12458264-12458384 1.20e-06 5_[+3(7.67e-05)]_22_[+4(1.06e-06)]_\ 8_[+2(2.76e-05)]_61 chr3R:15667249-15667369 2.33e-02 120 chr3R:6664432-6664552 3.61e-05 27_[+1(2.88e-05)]_42_[+5(4.89e-06)]_\ 24_[+1(1.93e-05)]_3 chr3R:21001273-21001393 1.77e-01 120 chr3R:17825931-17826051 9.59e-01 120 chr3R:13404957-13405077 8.50e-01 120 chr2L:1448334-1448454 2.77e-01 120 chr2L:4378501-4378621 1.37e-02 98_[+3(4.52e-05)]_14 chr3R:13972303-13972423 7.20e-01 120 chr2R:9703317-9703437 5.23e-01 120 chr3L:1083426-1083546 6.16e-01 120 chr2R:6528068-6528188 1.06e-03 120 chrX:19843030-19843150 9.81e-01 120 chr3L:18225112-18225232 7.80e-01 120 chr2L:9586100-9586220 9.98e-01 120 chr3R:19246466-19246586 1.14e-04 98_[+4(1.06e-06)]_14 chr3L:15670578-15670698 9.74e-01 120 chrX:7552268-7552388 2.94e-01 120 chrX:12090326-12090446 8.66e-01 120 chr2L:1456992-1457112 7.02e-01 120 chr2L:5365911-5366031 8.50e-01 120 chr3L:15732198-15732318 8.77e-01 120 chrX:14629577-14629697 9.76e-01 120 chr3R:10626162-10626282 8.63e-01 120 chr3L:18838006-18838126 3.94e-01 120 chr3L:14274796-14274916 2.55e-03 [+1(6.84e-05)]_112 chr3R:6751893-6752013 9.78e-01 120 chr3R:29541510-29541630 9.13e-01 120 chrX:7166470-7166590 4.18e-02 103_[+2(2.76e-05)]_9 chr3L:8834597-8834717 1.27e-02 111_[+1(1.93e-05)]_1 chr2R:18675633-18675753 1.74e-03 79_[+2(2.76e-05)]_33 chr3R:8197280-8197400 3.98e-01 120 chr3L:6978141-6978261 3.80e-03 29_[+5(7.64e-05)]_83 chr3R:30918974-30919094 4.55e-02 60_[+1(6.84e-05)]_52 chr3R:29547711-29547831 9.33e-01 120 chrX:2050788-2050908 3.13e-03 45_[+2(2.76e-05)]_53_[+5(6.45e-05)]_\ 6 chr2L:8165937-8166057 5.25e-04 120 chr3R:9349494-9349614 1.54e-01 120 chr3R:10354104-10354224 9.99e-01 120 chr3L:16056363-16056483 6.06e-03 120 chr3R:11780844-11780964 5.11e-01 120 chr2R:17084279-17084399 1.56e-02 120 chr2L:11470060-11470180 7.96e-01 120 chr3L:4272310-4272430 9.56e-04 21_[+5(2.16e-06)]_91 chr3L:1431774-1431894 4.83e-01 120 chr2R:6607639-6607759 9.50e-02 120 chrX:5604296-5604416 3.62e-02 81_[+1(1.93e-05)]_31 chr2L:18906750-18906870 3.06e-01 120 chr3R:26539288-26539408 2.86e-03 65_[+3(2.66e-05)]_47 chr2L:7526182-7526302 4.20e-01 120 chr3L:22130361-22130481 9.88e-01 120 chrX:7892612-7892732 9.54e-01 120 chr2L:5042255-5042375 2.20e-01 120 chr3R:29696517-29696637 7.02e-01 120 chr3R:23738090-23738210 1.23e-04 82_[+3(9.87e-06)]_30 chr2R:13470231-13470351 2.36e-01 120 chr3R:10651067-10651187 6.15e-01 120 chr3R:4861287-4861407 6.34e-02 77_[+1(2.88e-05)]_[+1(2.88e-05)]_27 chr2L:6818464-6818584 1.66e-02 120 chr2R:6196626-6196746 1.84e-01 120 chr3L:5017707-5017827 2.72e-01 120 chr3R:19935352-19935472 3.34e-01 120 chr3L:5994264-5994384 4.63e-01 120 chr3R:31704672-31704792 3.43e-01 120 chrX:3359015-3359135 3.35e-01 120 chrX:19839258-19839378 1.55e-02 64_[+2(2.76e-05)]_48 chr3L:11355615-11355735 9.86e-03 120 chrX:12940046-12940166 8.98e-01 120 chr3L:16013328-16013448 9.66e-01 120 chrX:12744409-12744529 8.41e-01 120 chr3R:28586958-28587078 1.25e-01 120 chr3R:23134848-23134968 5.10e-05 24_[+5(2.16e-06)]_88 chr3R:23159465-23159585 5.30e-01 120 chr2L:20204771-20204891 5.14e-01 120 chr2R:16515160-16515280 5.60e-04 13_[+3(6.33e-05)]_99 chr3L:12677678-12677798 1.67e-03 120 chr2L:4365052-4365172 1.63e-01 120 chr3R:30865561-30865681 9.64e-01 120 chr2L:7293587-7293707 3.62e-01 120 chr2R:18585043-18585163 3.33e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************