******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG15479.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:3620738-3620858 1.0000 120 chr3R:24027361-24027481 1.0000 120 chr2R:14310661-14310781 1.0000 120 chr2L:17269848-17269968 1.0000 120 chrX:10583510-10583630 1.0000 120 chr3L:9485471-9485591 1.0000 120 chr3L:21594242-21594362 1.0000 120 chr3L:5853721-5853841 1.0000 120 chr2L:5202661-5202781 1.0000 120 chr2L:5195445-5195565 1.0000 120 chr2R:14231024-14231144 1.0000 120 chr2L:9128783-9128903 1.0000 120 chr2R:6504502-6504622 1.0000 120 chr2R:20129669-20129789 1.0000 120 chr2R:12614754-12614874 1.0000 120 chr2L:11418860-11418980 1.0000 120 chr3R:20573884-20574004 1.0000 120 chr3L:21298792-21298912 1.0000 120 chr3L:8527334-8527454 1.0000 120 chr3L:22869257-22869377 1.0000 120 chr2R:14167634-14167754 1.0000 120 chr2R:12209077-12209197 1.0000 120 chrX:16688827-16688947 1.0000 120 chr3R:17081312-17081432 1.0000 120 chr2R:17479800-17479920 1.0000 120 chr2R:12170944-12171064 1.0000 120 chr3L:2197524-2197644 1.0000 120 chr2L:13231558-13231678 1.0000 120 chr3L:22204666-22204786 1.0000 120 chr2L:6617292-6617412 1.0000 120 chrX:20639477-20639597 1.0000 120 chrX:7082518-7082638 1.0000 120 chr3L:22168660-22168780 1.0000 120 chr2L:18799777-18799897 1.0000 120 chr2L:356410-356530 1.0000 120 chr3R:4487063-4487183 1.0000 120 chr3R:18118808-18118928 1.0000 120 chr3L:11035153-11035273 1.0000 120 chrX:10493946-10494066 1.0000 120 chr2L:28857-28977 1.0000 120 chr3L:14406762-14406882 1.0000 120 chr2R:2079240-2079360 1.0000 120 chr2R:16520771-16520891 1.0000 120 chr3L:14946194-14946314 1.0000 120 chr2L:9992588-9992708 1.0000 120 chr2L:12065247-12065367 1.0000 120 chr3R:16685255-16685375 1.0000 120 chr2R:20560497-20560617 1.0000 120 chrX:14221459-14221579 1.0000 120 chr2R:18694157-18694277 1.0000 120 chr2L:16455235-16455355 1.0000 120 chr3L:14105119-14105239 1.0000 120 chrX:1480761-1480881 1.0000 120 chr2R:15556042-15556162 1.0000 120 chr3L:22067976-22068096 1.0000 120 chr2L:7585073-7585193 1.0000 120 chr2R:7592738-7592858 1.0000 120 chr3L:25849843-25849963 1.0000 120 chrX:15487790-15487910 1.0000 120 chr2L:4893536-4893656 1.0000 120 chrX:3838081-3838201 1.0000 120 chrX:4454732-4454852 1.0000 120 chr3L:8452833-8452953 1.0000 120 chr3L:14944414-14944534 1.0000 120 chrX:766167-766287 1.0000 120 chr2R:12965411-12965531 1.0000 120 chr3L:1772735-1772855 1.0000 120 chr3L:8454505-8454625 1.0000 120 chrX:2512089-2512209 1.0000 120 chr2R:8226541-8226661 1.0000 120 chr2L:5053687-5053807 1.0000 120 chr3L:19288675-19288795 1.0000 120 chr2R:19661945-19662065 1.0000 120 chr3L:14583944-14584064 1.0000 120 chr3R:8187601-8187721 1.0000 120 chrX:10809450-10809570 1.0000 120 chr3R:9684266-9684386 1.0000 120 chr2L:12551535-12551655 1.0000 120 chr3L:13408652-13408772 1.0000 120 chr3L:21266399-21266519 1.0000 120 chr2L:1948105-1948225 1.0000 120 chr3R:30700252-30700372 1.0000 120 chr2L:9705430-9705550 1.0000 120 chrX:19775204-19775324 1.0000 120 chr3R:4204318-4204438 1.0000 120 chr2L:9874618-9874738 1.0000 120 chrX:22836594-22836714 1.0000 120 chr2L:8839297-8839417 1.0000 120 chr3R:6932060-6932180 1.0000 120 chr3L:20981407-20981527 1.0000 120 chr2L:2362307-2362427 1.0000 120 chr2L:1958359-1958479 1.0000 120 chr3R:28568283-28568403 1.0000 120 chr3R:5262557-5262677 1.0000 120 chr2R:13555779-13555899 1.0000 120 chr2R:4613764-4613884 1.0000 120 chr2R:11609336-11609456 1.0000 120 chrX:7742181-7742301 1.0000 120 chr2L:514232-514352 1.0000 120 chrX:16793561-16793681 1.0000 120 chr2L:8236518-8236638 1.0000 120 chr3R:30775850-30775970 1.0000 120 chrX:7044814-7044934 1.0000 120 chr3L:16018029-16018149 1.0000 120 chrX:4585447-4585567 1.0000 120 chr2L:8116772-8116892 1.0000 120 chr3R:23341881-23342001 1.0000 120 chr2L:14045823-14045943 1.0000 120 chr2L:18778756-18778876 1.0000 120 chrX:592994-593114 1.0000 120 chr3R:5684523-5684643 1.0000 120 chrX:13282618-13282738 1.0000 120 chr3L:11253998-11254118 1.0000 120 chr4:846255-846375 1.0000 120 chr2L:5277418-5277538 1.0000 120 chr2R:18305979-18306099 1.0000 120 chr3L:618065-618185 1.0000 120 chr3L:5834926-5835046 1.0000 120 chrX:13804558-13804678 1.0000 120 chr3L:14990027-14990147 1.0000 120 chr3R:30740836-30740956 1.0000 120 chr2R:9928016-9928136 1.0000 120 chr3R:14474180-14474300 1.0000 120 chr3R:29301381-29301501 1.0000 120 chr3R:5073874-5073994 1.0000 120 chr3R:6916839-6916959 1.0000 120 chr2R:13448770-13448890 1.0000 120 chr3L:1726889-1727009 1.0000 120 chr2R:9977112-9977232 1.0000 120 chr2R:5713510-5713630 1.0000 120 chr2R:7595445-7595565 1.0000 120 chr2R:9231223-9231343 1.0000 120 chr2L:1890445-1890565 1.0000 120 chr3L:1727697-1727817 1.0000 120 chrX:719197-719317 1.0000 120 chr3R:20791309-20791429 1.0000 120 chr3R:9683431-9683551 1.0000 120 chr3R:30780611-30780731 1.0000 120 chr3L:296748-296868 1.0000 120 chrX:7040633-7040753 1.0000 120 chrX:577093-577213 1.0000 120 chr3R:9632129-9632249 1.0000 120 chr2L:1068630-1068750 1.0000 120 chr3L:3812054-3812174 1.0000 120 chr3L:3304887-3305007 1.0000 120 chr3R:6957108-6957228 1.0000 120 chr3L:22952889-22953009 1.0000 120 chrX:13173040-13173160 1.0000 120 chr3R:25632812-25632932 1.0000 120 chr2L:21082921-21083041 1.0000 120 chr3R:4959990-4960110 1.0000 120 chr2R:22728537-22728657 1.0000 120 chr3R:9458947-9459067 1.0000 120 chr2R:20899967-20900087 1.0000 120 chr3R:19835093-19835213 1.0000 120 chr2L:8237934-8238054 1.0000 120 chr3R:8699665-8699785 1.0000 120 chrX:8643265-8643385 1.0000 120 chr2L:22218115-22218235 1.0000 120 chr3R:24726776-24726896 1.0000 120 chrX:6822903-6823023 1.0000 120 chr3L:12679412-12679532 1.0000 120 chr3R:19332485-19332605 1.0000 120 chr2L:8830871-8830991 1.0000 120 chr2L:12545475-12545595 1.0000 120 chr3L:7154350-7154470 1.0000 120 chrX:19563916-19564036 1.0000 120 chr3R:31193062-31193182 1.0000 120 chr3R:21420612-21420732 1.0000 120 chr3R:4591744-4591864 1.0000 120 chr3R:16810990-16811110 1.0000 120 chr3L:9037649-9037769 1.0000 120 chrX:7040834-7040954 1.0000 120 chr3R:6888945-6889065 1.0000 120 chr2R:6248533-6248653 1.0000 120 chr2R:6194349-6194469 1.0000 120 chr3L:10848877-10848997 1.0000 120 chr2L:346949-347069 1.0000 120 chr3R:9398995-9399115 1.0000 120 chr2R:13710411-13710531 1.0000 120 chr3L:21472021-21472141 1.0000 120 chr3R:1444904-1445024 1.0000 120 chr3L:9017272-9017392 1.0000 120 chr3R:5056149-5056269 1.0000 120 chr2L:17262903-17263023 1.0000 120 chr3L:4694954-4695074 1.0000 120 chr3R:19808504-19808624 1.0000 120 chrX:2408903-2409023 1.0000 120 chr2R:8129689-8129809 1.0000 120 chrX:423475-423595 1.0000 120 chrX:12747083-12747203 1.0000 120 chr2L:7291189-7291309 1.0000 120 chr3L:8189355-8189475 1.0000 120 chr3L:18348308-18348428 1.0000 120 chrX:10093987-10094107 1.0000 120 chr3L:20784557-20784677 1.0000 120 chr3R:8108900-8109020 1.0000 120 chr2R:10078642-10078762 1.0000 120 chr3R:4203372-4203492 1.0000 120 chr3L:4709880-4710000 1.0000 120 chrX:15713368-15713488 1.0000 120 chr3R:17082626-17082746 1.0000 120 chr3R:9440410-9440530 1.0000 120 chr2R:9867817-9867937 1.0000 120 chr3R:16718798-16718918 1.0000 120 chr2L:12666175-12666295 1.0000 120 chr3R:24297011-24297131 1.0000 120 chr3R:4340536-4340656 1.0000 120 chr2R:9984960-9985080 1.0000 120 chr3L:9368840-9368960 1.0000 120 chr2L:2456633-2456753 1.0000 120 chr2R:19258648-19258768 1.0000 120 chr2R:2704138-2704258 1.0000 120 chr2L:7859749-7859869 1.0000 120 chr2R:6505814-6505934 1.0000 120 chr3L:21727517-21727637 1.0000 120 chr2L:8510577-8510697 1.0000 120 chrX:16957635-16957755 1.0000 120 chr3R:23880227-23880347 1.0000 120 chr2R:22244922-22245042 1.0000 120 chr3R:23881126-23881246 1.0000 120 chr3L:14995531-14995651 1.0000 120 chr3R:13809386-13809506 1.0000 120 chrX:16818879-16818999 1.0000 120 chr3L:17411377-17411497 1.0000 120 chr2L:9587516-9587636 1.0000 120 chr2L:20561937-20562057 1.0000 120 chr3R:15474011-15474131 1.0000 120 chr2R:6680264-6680384 1.0000 120 chr3R:4866256-4866376 1.0000 120 chr2L:1965844-1965964 1.0000 120 chr2R:12530707-12530827 1.0000 120 chr3L:9002601-9002721 1.0000 120 chr2R:19780764-19780884 1.0000 120 chrX:11818129-11818249 1.0000 120 chr2R:13228843-13228963 1.0000 120 chr2R:23206098-23206218 1.0000 120 chr3L:15595289-15595409 1.0000 120 chr3R:4545980-4546100 1.0000 120 chrX:18303740-18303860 1.0000 120 chr2R:24273551-24273671 1.0000 120 chr2R:15886654-15886774 1.0000 120 chr3L:14556190-14556310 1.0000 120 chrX:409531-409651 1.0000 120 chr2L:21083122-21083242 1.0000 120 chr3R:13879475-13879595 1.0000 120 chr3R:23789493-23789613 1.0000 120 chr3R:22455251-22455371 1.0000 120 chr2R:1341012-1341132 1.0000 120 chrX:11793546-11793666 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG15479/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG15479.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.266 C 0.236 G 0.231 T 0.267 Background letter frequencies (from file dataset with add-one prior applied): A 0.266 C 0.236 G 0.231 T 0.267 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTGYGCAA MEME-1 width = 8 sites = 29 llr = 266 E-value = 3.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGYGCAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:::::a9 pos.-specific C :::3:a:: probability G ::9:a::1 matrix T 8a17:::: bits 2.1 ** 1.9 * *** 1.7 * *** 1.5 ** **** Relative 1.3 ** **** Entropy 1.1 ******** (13.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTGTGCAA consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYGCAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:409531-409651 32 1.70e-05 GTACGATCAC TTGTGCAA AGGACTTAGG chrX:11818129-11818249 63 1.70e-05 GACGTGTAAG TTGTGCAA ACAAAGAGCC chr3L:9017272-9017392 31 1.70e-05 GTAGTCGCCT TTGTGCAA GTAGTCGTGC chr2L:346949-347069 50 1.70e-05 CTCTGTGTAA TTGTGCAA TTGGCTTAAC chr2L:8237934-8238054 31 1.70e-05 AAAAGATCTC TTGTGCAA TAATACATAT chr3R:6957108-6957228 42 1.70e-05 attctcgttt ttGTGCAA TTTTTTTGCC chrX:7040633-7040753 65 1.70e-05 TCATGGGTTG TTGTGCAA GCAATCTGAA chrX:7742181-7742301 58 1.70e-05 AGCTTAAACT TTGTGCAA TTTTTTAAGC chrX:3838081-3838201 96 1.70e-05 ATCTAAATGC TTGTGCAA CTGTTGCccg chr3L:5853721-5853841 79 1.70e-05 TGTTTGCGGA TTGTGCAA TTGATGTGCG chr3R:19332485-19332605 19 3.20e-05 AACAAAATGA TTGCGCAA AAAAAACAAT chr3R:25632812-25632932 18 3.20e-05 AAATTCGGTC TTGCGCAA GAATCCTGCA chr3R:4204318-4204438 105 3.20e-05 CGCCCGCCTT TTGCGCAA GTCGGACC chrX:10493946-10494066 53 3.20e-05 CCAGGTACAG TTGCGCAA GCCAATGACT chr2L:13231558-13231678 47 3.20e-05 CGCACAGCGA TTGCGCAA TCGCCAAAAG chr3R:20573884-20574004 95 3.20e-05 GCAATACGGC TTGCGCAA CTCCGCTGCC chr3L:14556190-14556310 43 4.88e-05 GCAGAAAAAT ATGTGCAA ACATAGCATC chr2R:9867817-9867937 42 4.88e-05 AGAATCTTAC ATGTGCAA AATTACTGAG chr2R:9977112-9977232 71 4.88e-05 TGAGTGCAGA ATGTGCAA TAAAGCGGCA chr3L:13408652-13408772 93 4.88e-05 GGACCCAAAA ATGTGCAA CTGTTGGGCG chr2R:7592738-7592858 9 4.88e-05 GCGCCGGC ATGTGCAA TGGCAGTCTT chr3R:13809386-13809506 33 6.38e-05 TACGCGGCCG ATGCGCAA GCAGGCCAAT chr3L:2197524-2197644 85 6.38e-05 GATCTACTTG ATGCGCAA GTGCCTGCAG chr2R:19780764-19780884 74 8.34e-05 CCACCGCCCT TTTTGCAA CCTCGACCTC chr2L:18778756-18778876 63 8.34e-05 GTTGTGTTAT TTTTGCAA TTTTCGCTCG chr2R:19661945-19662065 46 8.34e-05 TTAGTGAAAA TTTTGCAA CTTAATCCGT chr3R:30775850-30775970 27 1.15e-04 TAACTCCCAA TTGTGCAG TTGTTGTTTT chr2L:8236518-8236638 90 1.15e-04 CTTAACACCA TTTCGCAA CGGCCTATCT chr3L:22067976-22068096 46 1.28e-04 GCGGGTGGTG TTGCGCAG CACAGTTATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYGCAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:409531-409651 1.7e-05 31_[+1]_81 chrX:11818129-11818249 1.7e-05 62_[+1]_50 chr3L:9017272-9017392 1.7e-05 30_[+1]_82 chr2L:346949-347069 1.7e-05 49_[+1]_63 chr2L:8237934-8238054 1.7e-05 30_[+1]_82 chr3R:6957108-6957228 1.7e-05 41_[+1]_71 chrX:7040633-7040753 1.7e-05 64_[+1]_48 chrX:7742181-7742301 1.7e-05 57_[+1]_55 chrX:3838081-3838201 1.7e-05 95_[+1]_17 chr3L:5853721-5853841 1.7e-05 78_[+1]_34 chr3R:19332485-19332605 3.2e-05 18_[+1]_94 chr3R:25632812-25632932 3.2e-05 17_[+1]_95 chr3R:4204318-4204438 3.2e-05 104_[+1]_8 chrX:10493946-10494066 3.2e-05 52_[+1]_60 chr2L:13231558-13231678 3.2e-05 46_[+1]_66 chr3R:20573884-20574004 3.2e-05 94_[+1]_18 chr3L:14556190-14556310 4.9e-05 42_[+1]_70 chr2R:9867817-9867937 4.9e-05 41_[+1]_71 chr2R:9977112-9977232 4.9e-05 70_[+1]_42 chr3L:13408652-13408772 4.9e-05 92_[+1]_20 chr2R:7592738-7592858 4.9e-05 8_[+1]_104 chr3R:13809386-13809506 6.4e-05 32_[+1]_80 chr3L:2197524-2197644 6.4e-05 84_[+1]_28 chr2R:19780764-19780884 8.3e-05 73_[+1]_39 chr2L:18778756-18778876 8.3e-05 62_[+1]_50 chr2R:19661945-19662065 8.3e-05 45_[+1]_67 chr3R:30775850-30775970 0.00012 26_[+1]_86 chr2L:8236518-8236638 0.00012 89_[+1]_23 chr3L:22067976-22068096 0.00013 45_[+1]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYGCAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGYGCAA width=8 seqs=29 chrX:409531-409651 ( 32) TTGTGCAA 1 chrX:11818129-11818249 ( 63) TTGTGCAA 1 chr3L:9017272-9017392 ( 31) TTGTGCAA 1 chr2L:346949-347069 ( 50) TTGTGCAA 1 chr2L:8237934-8238054 ( 31) TTGTGCAA 1 chr3R:6957108-6957228 ( 42) TTGTGCAA 1 chrX:7040633-7040753 ( 65) TTGTGCAA 1 chrX:7742181-7742301 ( 58) TTGTGCAA 1 chrX:3838081-3838201 ( 96) TTGTGCAA 1 chr3L:5853721-5853841 ( 79) TTGTGCAA 1 chr3R:19332485-19332605 ( 19) TTGCGCAA 1 chr3R:25632812-25632932 ( 18) TTGCGCAA 1 chr3R:4204318-4204438 ( 105) TTGCGCAA 1 chrX:10493946-10494066 ( 53) TTGCGCAA 1 chr2L:13231558-13231678 ( 47) TTGCGCAA 1 chr3R:20573884-20574004 ( 95) TTGCGCAA 1 chr3L:14556190-14556310 ( 43) ATGTGCAA 1 chr2R:9867817-9867937 ( 42) ATGTGCAA 1 chr2R:9977112-9977232 ( 71) ATGTGCAA 1 chr3L:13408652-13408772 ( 93) ATGTGCAA 1 chr2R:7592738-7592858 ( 9) ATGTGCAA 1 chr3R:13809386-13809506 ( 33) ATGCGCAA 1 chr3L:2197524-2197644 ( 85) ATGCGCAA 1 chr2R:19780764-19780884 ( 74) TTTTGCAA 1 chr2L:18778756-18778876 ( 63) TTTTGCAA 1 chr2R:19661945-19662065 ( 46) TTTTGCAA 1 chr3R:30775850-30775970 ( 27) TTGTGCAG 1 chr2L:8236518-8236638 ( 90) TTTCGCAA 1 chr3L:22067976-22068096 ( 46) TTGCGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYGCAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5678 E= 3.4e-003 -14 -1150 -1150 151 -1150 -1150 -1150 191 -1150 -1150 190 -95 -1150 54 -1150 130 -1150 -1150 211 -1150 -1150 208 -1150 -1150 191 -1150 -1150 -1150 181 -1150 -174 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYGCAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 3.4e-003 0.241379 0.000000 0.000000 0.758621 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.862069 0.137931 0.000000 0.344828 0.000000 0.655172 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.931034 0.000000 0.068966 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYGCAA MEME-1 regular expression -------------------------------------------------------------------------------- [TA]TG[TC]GCAA -------------------------------------------------------------------------------- Time 7.53 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGGTAGM MEME-2 width = 8 sites = 19 llr = 187 E-value = 9.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGGTAGM MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a:1:a:4 pos.-specific C a:::2::6 probability G ::a9::a: matrix T ::::8::: bits 2.1 * * * 1.9 **** ** 1.7 **** ** 1.5 **** ** Relative 1.3 ******* Entropy 1.1 ******** (14.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGGTAGC consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGTAGM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:409531-409651 67 1.30e-05 TTTTCGAGGG CAGGTAGC CAGGATCCGA chr3R:5056149-5056269 37 1.30e-05 AGCAGCAGCC CAGGTAGC GAAAAAGAGA chrX:6822903-6823023 108 1.30e-05 ATTCGGTGGG CAGGTAGC GGTCA chr3L:296748-296868 10 1.30e-05 TGCGCATAC CAGGTAGC AAATGGCCAG chrX:592994-593114 27 1.30e-05 ctgacccgac cAGGTAGC TGCGATCCTT chr2L:8116772-8116892 89 1.30e-05 TGTGTGTGCT CAGGTAGC CGGCGAGGTA chr2R:20560497-20560617 2 1.30e-05 G CAGGTAGC TCATATTGAT chrX:10493946-10494066 110 1.30e-05 CCACTACCCA CAGGTAGC CCA chr3R:13879475-13879595 76 2.76e-05 ACTTAAGGCC CAGGTAGA TATCGGCACT chr2R:19258648-19258768 46 2.76e-05 TTGGCCCAGG CAGGTAGA ACCTGCGATA chrX:22836594-22836714 100 2.76e-05 ATCCTGAGGA CAGGTAGA ACACCGCATC chr3L:14944414-14944534 35 2.76e-05 AACCGTTTTG CAGGTAGA ATTAGCAGTT chr2L:9992588-9992708 94 2.76e-05 TGGGTAAACT CAGGTAGA GACTATCCCA chr3L:8527334-8527454 19 2.76e-05 AATTGCTCAG CAGGTAGA GAGACGATCT chrX:7742181-7742301 81 3.91e-05 TAAGCACACA CAGGCAGC AGCATGCGTA chr2R:14167634-14167754 51 3.91e-05 ACTTCAGGCA CAGGCAGC CAAGCAGATC chr3L:14556190-14556310 30 5.20e-05 AGAAAAAAGT CAGGCAGA AAAATATGTG chr3R:23880227-23880347 103 5.20e-05 GATCAAAATT CAGGCAGA TTAGGAAAGA chr2R:8226541-8226661 66 6.69e-05 CCAAGAAACG CAGATAGC TGGGTCCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGTAGM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:409531-409651 1.3e-05 66_[+2]_46 chr3R:5056149-5056269 1.3e-05 36_[+2]_76 chrX:6822903-6823023 1.3e-05 107_[+2]_5 chr3L:296748-296868 1.3e-05 9_[+2]_103 chrX:592994-593114 1.3e-05 26_[+2]_86 chr2L:8116772-8116892 1.3e-05 88_[+2]_24 chr2R:20560497-20560617 1.3e-05 1_[+2]_111 chrX:10493946-10494066 1.3e-05 109_[+2]_3 chr3R:13879475-13879595 2.8e-05 75_[+2]_37 chr2R:19258648-19258768 2.8e-05 45_[+2]_67 chrX:22836594-22836714 2.8e-05 99_[+2]_13 chr3L:14944414-14944534 2.8e-05 34_[+2]_78 chr2L:9992588-9992708 2.8e-05 93_[+2]_19 chr3L:8527334-8527454 2.8e-05 18_[+2]_94 chrX:7742181-7742301 3.9e-05 80_[+2]_32 chr2R:14167634-14167754 3.9e-05 50_[+2]_62 chr3L:14556190-14556310 5.2e-05 29_[+2]_83 chr3R:23880227-23880347 5.2e-05 102_[+2]_10 chr2R:8226541-8226661 6.7e-05 65_[+2]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGTAGM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGGTAGM width=8 seqs=19 chrX:409531-409651 ( 67) CAGGTAGC 1 chr3R:5056149-5056269 ( 37) CAGGTAGC 1 chrX:6822903-6823023 ( 108) CAGGTAGC 1 chr3L:296748-296868 ( 10) CAGGTAGC 1 chrX:592994-593114 ( 27) CAGGTAGC 1 chr2L:8116772-8116892 ( 89) CAGGTAGC 1 chr2R:20560497-20560617 ( 2) CAGGTAGC 1 chrX:10493946-10494066 ( 110) CAGGTAGC 1 chr3R:13879475-13879595 ( 76) CAGGTAGA 1 chr2R:19258648-19258768 ( 46) CAGGTAGA 1 chrX:22836594-22836714 ( 100) CAGGTAGA 1 chr3L:14944414-14944534 ( 35) CAGGTAGA 1 chr2L:9992588-9992708 ( 94) CAGGTAGA 1 chr3L:8527334-8527454 ( 19) CAGGTAGA 1 chrX:7742181-7742301 ( 81) CAGGCAGC 1 chr2R:14167634-14167754 ( 51) CAGGCAGC 1 chr3L:14556190-14556310 ( 30) CAGGCAGA 1 chr3R:23880227-23880347 ( 103) CAGGCAGA 1 chr2R:8226541-8226661 ( 66) CAGATAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGTAGM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.732 E= 9.7e-001 -1089 208 -1089 -1089 191 -1089 -1089 -1089 -1089 -1089 211 -1089 -233 -1089 204 -1089 -1089 -17 -1089 156 191 -1089 -1089 -1089 -1089 -1089 211 -1089 66 129 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGTAGM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 9.7e-001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.052632 0.000000 0.947368 0.000000 0.000000 0.210526 0.000000 0.789474 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.421053 0.578947 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGTAGM MEME-2 regular expression -------------------------------------------------------------------------------- CAGG[TC]AG[CA] -------------------------------------------------------------------------------- Time 13.78 secs. ******************************************************************************** ******************************************************************************** MOTIF HGATAAGV MEME-3 width = 8 sites = 35 llr = 310 E-value = 3.6e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif HGATAAGV MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3:a:aa:2 pos.-specific C 3::::::4 probability G :a::::a4 matrix T 5::a:::: bits 2.1 * * 1.9 ****** 1.7 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ****** (12.8 bits) 0.8 ****** 0.6 ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGATAAGC consensus C G sequence A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGATAAGV MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:21083122-21083242 41 3.34e-05 CAGTTGCTCT TGATAAGG ATTGACACCC chr2R:22244922-22245042 49 3.34e-05 CAAGCTGTAG TGATAAGG GCCGTGTAGA chr3L:21727517-21727637 14 3.34e-05 AGGCAACAAC TGATAAGC AATCCACCGC chr3R:4203372-4203492 103 3.34e-05 TGTGTAATTT TGATAAGG TCATATATTT chrX:10093987-10094107 41 3.34e-05 CATTTACGCA TGATAAGC CCGATAAGCA chr3R:9683431-9683551 112 3.34e-05 TCTGTGCCGC TGATAAGC C chr3L:1726889-1727009 80 3.34e-05 ATTTTACAAG TGATAAGG GTGGATGATA chr2L:8116772-8116892 55 3.34e-05 ACTGCGGATG TGATAAGG ATGGGGCAAC chr3R:30775850-30775970 63 3.34e-05 CCTGCCAGCG TGATAAGG CATTGTTGCC chr2L:514232-514352 5 3.34e-05 CGAT TGATAAGC TGGAACAGCT chr3L:20981407-20981527 86 3.34e-05 AGCCGGATGC TGATAAGC CGTTTGGACG chr3L:14406762-14406882 100 3.34e-05 AAGAGGGAAA TGATAAGG CTAGGTAAGA chr3R:24027361-24027481 61 3.34e-05 CTCAAATTTA TGATAAGG CTGGCAAGCA chr3L:18348308-18348428 15 6.30e-05 CCCTTGGACG CGATAAGC CAAACACGAG chr3R:9458947-9459067 77 6.30e-05 GTTTACTTCG CGATAAGC CAGAGCACTC chr3R:29301381-29301501 8 6.30e-05 TATATCT CGATAAGG TGGTCATTTT chr3R:30740836-30740956 21 6.30e-05 CGAAGGAAGT CGATAAGG TCCGTAGTCC chr3R:8187601-8187721 8 6.30e-05 ATAAGGA CGATAAGC GCTTACGCAT chrX:15487790-15487910 49 6.30e-05 ATTTAAACTG CGATAAGC TAGGAGTCGG chr2L:16455235-16455355 103 6.30e-05 GCGATGATGG CGATAAGG AAATGCATGT chr2L:12065247-12065367 3 6.30e-05 AC CGATAAGG ATTAACACTT chrX:577093-577213 78 9.63e-05 GGCAGAAATC AGATAAGC GGGCTCGGCG chr2R:5713510-5713630 49 9.63e-05 TCATCGCGAG AGATAAGC ACTTGCTGCC chr3R:5073874-5073994 89 9.63e-05 GCCATCGGCC AGATAAGC TAAATCCAGT chr3R:28568283-28568403 74 9.63e-05 GCCCGAGATT AGATAAGG CACCTCTACC chrX:14221459-14221579 94 9.63e-05 ACATGCAAGC AGATAAGC TGCATAATAA chr3L:22204666-22204786 98 9.63e-05 TTTCTATTGT AGATAAGC GGGAAACATG chr3R:9684266-9684386 90 1.15e-04 CACAGCCTAC TGATAAGA ACAAGCCACG chr2R:18694157-18694277 67 1.15e-04 TTGTTACCCC TGATAAGA GCGCACAGCT chrX:10583510-10583630 113 1.15e-04 AGCAACCCAT TGATAAGA chr3L:11253998-11254118 3 1.32e-04 TA CGATAAGA AGGCTGTCGA chr3L:21266399-21266519 29 1.32e-04 TAACGAAAGA CGATAAGA ACACTGCAAA chr2L:1890445-1890565 78 1.51e-04 AGACGCGGAA AGATAAGA TACAAGCGGA chr2R:12614754-12614874 49 1.51e-04 TATGTAAGGC AGATAAGA CCAGTTCGCG chr2R:14231024-14231144 108 1.51e-04 AAATTGGTTC AGATAAGA GGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGATAAGV MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:21083122-21083242 3.3e-05 40_[+3]_72 chr2R:22244922-22245042 3.3e-05 48_[+3]_64 chr3L:21727517-21727637 3.3e-05 13_[+3]_99 chr3R:4203372-4203492 3.3e-05 102_[+3]_10 chrX:10093987-10094107 3.3e-05 40_[+3]_72 chr3R:9683431-9683551 3.3e-05 111_[+3]_1 chr3L:1726889-1727009 3.3e-05 79_[+3]_33 chr2L:8116772-8116892 3.3e-05 54_[+3]_58 chr3R:30775850-30775970 3.3e-05 62_[+3]_50 chr2L:514232-514352 3.3e-05 4_[+3]_108 chr3L:20981407-20981527 3.3e-05 85_[+3]_27 chr3L:14406762-14406882 3.3e-05 99_[+3]_13 chr3R:24027361-24027481 3.3e-05 60_[+3]_52 chr3L:18348308-18348428 6.3e-05 14_[+3]_98 chr3R:9458947-9459067 6.3e-05 76_[+3]_36 chr3R:29301381-29301501 6.3e-05 7_[+3]_105 chr3R:30740836-30740956 6.3e-05 20_[+3]_92 chr3R:8187601-8187721 6.3e-05 7_[+3]_105 chrX:15487790-15487910 6.3e-05 48_[+3]_64 chr2L:16455235-16455355 6.3e-05 102_[+3]_10 chr2L:12065247-12065367 6.3e-05 2_[+3]_110 chrX:577093-577213 9.6e-05 77_[+3]_35 chr2R:5713510-5713630 9.6e-05 48_[+3]_64 chr3R:5073874-5073994 9.6e-05 88_[+3]_24 chr3R:28568283-28568403 9.6e-05 73_[+3]_39 chrX:14221459-14221579 9.6e-05 93_[+3]_19 chr3L:22204666-22204786 9.6e-05 97_[+3]_15 chr3R:9684266-9684386 0.00012 89_[+3]_23 chr2R:18694157-18694277 0.00012 66_[+3]_46 chrX:10583510-10583630 0.00012 112_[+3] chr3L:11253998-11254118 0.00013 2_[+3]_110 chr3L:21266399-21266519 0.00013 28_[+3]_84 chr2L:1890445-1890565 0.00015 77_[+3]_35 chr2R:12614754-12614874 0.00015 48_[+3]_64 chr2R:14231024-14231144 0.00015 107_[+3]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGATAAGV MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HGATAAGV width=8 seqs=35 chr2L:21083122-21083242 ( 41) TGATAAGG 1 chr2R:22244922-22245042 ( 49) TGATAAGG 1 chr3L:21727517-21727637 ( 14) TGATAAGC 1 chr3R:4203372-4203492 ( 103) TGATAAGG 1 chrX:10093987-10094107 ( 41) TGATAAGC 1 chr3R:9683431-9683551 ( 112) TGATAAGC 1 chr3L:1726889-1727009 ( 80) TGATAAGG 1 chr2L:8116772-8116892 ( 55) TGATAAGG 1 chr3R:30775850-30775970 ( 63) TGATAAGG 1 chr2L:514232-514352 ( 5) TGATAAGC 1 chr3L:20981407-20981527 ( 86) TGATAAGC 1 chr3L:14406762-14406882 ( 100) TGATAAGG 1 chr3R:24027361-24027481 ( 61) TGATAAGG 1 chr3L:18348308-18348428 ( 15) CGATAAGC 1 chr3R:9458947-9459067 ( 77) CGATAAGC 1 chr3R:29301381-29301501 ( 8) CGATAAGG 1 chr3R:30740836-30740956 ( 21) CGATAAGG 1 chr3R:8187601-8187721 ( 8) CGATAAGC 1 chrX:15487790-15487910 ( 49) CGATAAGC 1 chr2L:16455235-16455355 ( 103) CGATAAGG 1 chr2L:12065247-12065367 ( 3) CGATAAGG 1 chrX:577093-577213 ( 78) AGATAAGC 1 chr2R:5713510-5713630 ( 49) AGATAAGC 1 chr3R:5073874-5073994 ( 89) AGATAAGC 1 chr3R:28568283-28568403 ( 74) AGATAAGG 1 chrX:14221459-14221579 ( 94) AGATAAGC 1 chr3L:22204666-22204786 ( 98) AGATAAGC 1 chr3R:9684266-9684386 ( 90) TGATAAGA 1 chr2R:18694157-18694277 ( 67) TGATAAGA 1 chrX:10583510-10583630 ( 113) TGATAAGA 1 chr3L:11253998-11254118 ( 3) CGATAAGA 1 chr3L:21266399-21266519 ( 29) CGATAAGA 1 chr2L:1890445-1890565 ( 78) AGATAAGA 1 chr2R:12614754-12614874 ( 49) AGATAAGA 1 chr2R:14231024-14231144 ( 108) AGATAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGATAAGV MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0411 E= 3.6e-004 -5 27 -1177 78 -1177 -1177 211 -1177 191 -1177 -1177 -1177 -1177 -1177 -1177 191 191 -1177 -1177 -1177 191 -1177 -1177 -1177 -1177 -1177 211 -1177 -22 76 69 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGATAAGV MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 3.6e-004 0.257143 0.285714 0.000000 0.457143 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.228571 0.400000 0.371429 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HGATAAGV MEME-3 regular expression -------------------------------------------------------------------------------- [TCA]GATAAG[CGA] -------------------------------------------------------------------------------- Time 19.98 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGCAGC MEME-4 width = 8 sites = 30 llr = 262 E-value = 7.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGCAGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1:a2:a:: pos.-specific C :a::9::7 probability G 7::8::93 matrix T 2:::1:1: bits 2.1 * 1.9 ** * 1.7 ** ** 1.5 ** *** Relative 1.3 ******* Entropy 1.1 ******** (12.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCAGC consensus T A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCAGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17411377-17411497 90 1.15e-05 CTTGGCAACA GCAGCAGC CTCTTATCAC chr3R:5056149-5056269 28 1.15e-05 AGTTTTTGCA GCAGCAGC CCAGGTAGCG chrX:7040834-7040954 19 1.15e-05 agcagcggta gcagcagc TCCTCATCGT chr2L:9705430-9705550 18 1.15e-05 Cgcagcagca gcagcagc aacagctatt chr2L:5053687-5053807 52 1.15e-05 CAGCCATACA GCAGCAGC TGCAATCACA chr2R:7592738-7592858 74 1.15e-05 tggagatgca gcagcagc AGACGGGCAA chr2R:24273551-24273671 105 2.27e-05 TGACGCATGT GCAGCAGG AGCACGGC chr2L:12666175-12666295 24 2.27e-05 GATGCAAAAG GCAGCAGG ATCGGCTTAC chr2R:22728537-22728657 16 2.27e-05 GTTTTCGGCT GCAGCAGG AGCAGATATT chrX:16793561-16793681 85 2.27e-05 GTCCTTTCGT GCAGCAGG TGTGCAAGGA chr2R:10078642-10078762 104 3.59e-05 AAGGGCACCA TCAGCAGC CCGAGGGGT chr3L:12679412-12679532 64 3.59e-05 CGTGGCATTA TCAGCAGC GATAATGAAT chr2L:1965844-1965964 95 4.91e-05 AGCGCGAATT GCAACAGC TGTCAAGTAT chr2R:6505814-6505934 106 4.91e-05 CGGcagcact gcaacagc aacagca chr3L:10848877-10848997 105 4.91e-05 ATCTTCGACT GCAACAGC AGCGGCAG chrX:6822903-6823023 16 4.91e-05 GGCGCCTGGC GCAACAGC CAGTTCGGCG chr3L:13408652-13408772 44 4.91e-05 CAAGAAATGA GCAACAGC AAGGGAAAAA chrX:7040633-7040753 109 6.24e-05 AGCCTGAATA GCAGCATC TATG chr3R:17081312-17081432 112 6.24e-05 TGTATTTTGC GCAGCATC G chr3R:23880227-23880347 60 7.54e-05 AAAGAAAGTC TCAGCAGG TAAGACATTG chr3R:19332485-19332605 96 7.54e-05 TGGCCGATGC TCAGCAGG TTGCCGAATA chr2L:12551535-12551655 68 7.54e-05 GAATTGCGAT TCAGCAGG GTGCGATGCG chrX:12747083-12747203 63 1.01e-04 CGACGAAGAC GCAGTAGC AATGACACCG chr3R:6888945-6889065 17 1.01e-04 TAGCCCAACG GCAGTAGC AATATAGCCA chr2R:6504502-6504622 108 1.01e-04 CTGATGCGCC GCAGTAGC AGAGC chr2L:346949-347069 77 1.14e-04 CTTATCCAAT ACAGCAGC ATAAACATTG chr2R:20129669-20129789 21 1.14e-04 TATCTATGAA ACAGCAGC AAATTAAGCG chr2L:9992588-9992708 53 1.27e-04 GTGCAAAATC GCAGCATG ACAACGGACG chr2L:13231558-13231678 98 1.27e-04 GGCTTCCCCG GCAGCATG AATACTTCGA chr2R:18305979-18306099 59 1.43e-04 TACACAATTT TCAACAGC TACATTTTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCAGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17411377-17411497 1.1e-05 89_[+4]_23 chr3R:5056149-5056269 1.1e-05 27_[+4]_85 chrX:7040834-7040954 1.1e-05 18_[+4]_94 chr2L:9705430-9705550 1.1e-05 17_[+4]_95 chr2L:5053687-5053807 1.1e-05 51_[+4]_61 chr2R:7592738-7592858 1.1e-05 73_[+4]_39 chr2R:24273551-24273671 2.3e-05 104_[+4]_8 chr2L:12666175-12666295 2.3e-05 23_[+4]_89 chr2R:22728537-22728657 2.3e-05 15_[+4]_97 chrX:16793561-16793681 2.3e-05 84_[+4]_28 chr2R:10078642-10078762 3.6e-05 103_[+4]_9 chr3L:12679412-12679532 3.6e-05 63_[+4]_49 chr2L:1965844-1965964 4.9e-05 94_[+4]_18 chr2R:6505814-6505934 4.9e-05 105_[+4]_7 chr3L:10848877-10848997 4.9e-05 104_[+4]_8 chrX:6822903-6823023 4.9e-05 15_[+4]_97 chr3L:13408652-13408772 4.9e-05 43_[+4]_69 chrX:7040633-7040753 6.2e-05 108_[+4]_4 chr3R:17081312-17081432 6.2e-05 111_[+4]_1 chr3R:23880227-23880347 7.5e-05 59_[+4]_53 chr3R:19332485-19332605 7.5e-05 95_[+4]_17 chr2L:12551535-12551655 7.5e-05 67_[+4]_45 chrX:12747083-12747203 0.0001 62_[+4]_50 chr3R:6888945-6889065 0.0001 16_[+4]_96 chr2R:6504502-6504622 0.0001 107_[+4]_5 chr2L:346949-347069 0.00011 76_[+4]_36 chr2R:20129669-20129789 0.00011 20_[+4]_92 chr2L:9992588-9992708 0.00013 52_[+4]_60 chr2L:13231558-13231678 0.00013 97_[+4]_15 chr2R:18305979-18306099 0.00014 58_[+4]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCAGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGCAGC width=8 seqs=30 chr3L:17411377-17411497 ( 90) GCAGCAGC 1 chr3R:5056149-5056269 ( 28) GCAGCAGC 1 chrX:7040834-7040954 ( 19) GCAGCAGC 1 chr2L:9705430-9705550 ( 18) GCAGCAGC 1 chr2L:5053687-5053807 ( 52) GCAGCAGC 1 chr2R:7592738-7592858 ( 74) GCAGCAGC 1 chr2R:24273551-24273671 ( 105) GCAGCAGG 1 chr2L:12666175-12666295 ( 24) GCAGCAGG 1 chr2R:22728537-22728657 ( 16) GCAGCAGG 1 chrX:16793561-16793681 ( 85) GCAGCAGG 1 chr2R:10078642-10078762 ( 104) TCAGCAGC 1 chr3L:12679412-12679532 ( 64) TCAGCAGC 1 chr2L:1965844-1965964 ( 95) GCAACAGC 1 chr2R:6505814-6505934 ( 106) GCAACAGC 1 chr3L:10848877-10848997 ( 105) GCAACAGC 1 chrX:6822903-6823023 ( 16) GCAACAGC 1 chr3L:13408652-13408772 ( 44) GCAACAGC 1 chrX:7040633-7040753 ( 109) GCAGCATC 1 chr3R:17081312-17081432 ( 112) GCAGCATC 1 chr3R:23880227-23880347 ( 60) TCAGCAGG 1 chr3R:19332485-19332605 ( 96) TCAGCAGG 1 chr2L:12551535-12551655 ( 68) TCAGCAGG 1 chrX:12747083-12747203 ( 63) GCAGTAGC 1 chr3R:6888945-6889065 ( 17) GCAGTAGC 1 chr2R:6504502-6504622 ( 108) GCAGTAGC 1 chr2L:346949-347069 ( 77) ACAGCAGC 1 chr2R:20129669-20129789 ( 21) ACAGCAGC 1 chr2L:9992588-9992708 ( 53) GCAGCATG 1 chr2L:13231558-13231678 ( 98) GCAGCATG 1 chr2R:18305979-18306099 ( 59) TCAACAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCAGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5839 E= 7.2e+002 -199 -1155 167 -42 -1155 208 -1155 -1155 191 -1155 -1155 -1155 -41 -1155 179 -1155 -1155 193 -1155 -141 191 -1155 -1155 -1155 -1155 -1155 191 -100 -1155 157 38 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCAGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 7.2e+002 0.066667 0.000000 0.733333 0.200000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.900000 0.000000 0.100000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.866667 0.133333 0.000000 0.700000 0.300000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCAGC MEME-4 regular expression -------------------------------------------------------------------------------- [GT]CA[GA]CAG[CG] -------------------------------------------------------------------------------- Time 26.10 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTATCKS MEME-5 width = 8 sites = 52 llr = 406 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTATCKS MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a:::2 pos.-specific C 6::::a:3 probability G 23::::45 matrix T 28a:a:6: bits 2.1 * 1.9 **** 1.7 **** 1.5 **** Relative 1.3 **** Entropy 1.1 ****** (11.3 bits) 0.8 ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTATCTG consensus TG GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCKS MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16818879-16818999 50 1.74e-05 GATTGCGCTA CTTATCTG GTGGCCAGTG chr2R:15556042-15556162 87 1.74e-05 CTCTGATTTG CTTATCTG ATAGCCCAGC chr2L:6617292-6617412 68 1.74e-05 GCTTCTTGGC CTTATCTG GTGGTCAACA chr2R:13228843-13228963 74 3.24e-05 CTGAACAGGC CTTATCGG CCAGATTATA chr3L:17411377-17411497 53 3.24e-05 GCGCTCTCCT CTTATCGG CCCAATGGCA chr2R:22244922-22245042 106 3.24e-05 TAAGATAATC CTTATCGG CTGAGAT chr2L:2362307-2362427 15 3.24e-05 CTACAACATT CTTATCGG TCCCTTGTGC chr2L:12065247-12065367 57 3.24e-05 GTGAGGGTTT CTTATCGG GTATATGGGT chr2R:17479800-17479920 45 3.24e-05 CCGTGGTCTC CTTATCGG ATCATGCTGC chr2R:20129669-20129789 42 3.24e-05 TTAAGCGTGT CTTATCGG CAAATTGCAG chr2R:6680264-6680384 46 5.02e-05 TACACAGTAG CTTATCTC GATCACTTTC chrX:766167-766287 100 5.02e-05 AATCCCCGTT CTTATCTC GAGTAAAAGA chr2L:7585073-7585193 18 5.02e-05 TTTTAATATC CTTATCTC GGGATCGTCG chr2R:24273551-24273671 40 6.56e-05 AAACAACTTC CTTATCGC AGCGATACAC chr3L:21472021-21472141 95 6.56e-05 tgGGCGCGTC CTTATCGC TAAGCAAACA chr3R:9458947-9459067 104 6.56e-05 CAATTACGCA CTTATCGC TTATTTCTA chr3L:11035153-11035273 108 6.56e-05 ATGCAAAACG CTTATCGC TGCAG chr3L:5853721-5853841 33 6.56e-05 TCTGTCTCGG CTTATCGC TTTAATCTCT chr3R:5056149-5056269 63 8.06e-05 GAGTGTCGCG CGTATCTG TCGGATGCAG chr2L:14045823-14045943 82 8.06e-05 AACGTCGTGC CGTATCTG TATCTTTATC chrX:4585447-4585567 30 8.06e-05 CAACATTCCC CGTATCTG AGAAATATCT chr2L:9874618-9874738 97 8.06e-05 GTGTGTCTAC CGTATCTG TGActgtctc chrX:2408903-2409023 58 1.13e-04 ATATGTTGTA CGTATCGG CAGGTCAAAA chrX:2512089-2512209 50 1.13e-04 aatctgaacc tttatctg GTCCTGAGTC chrX:15487790-15487910 79 1.13e-04 CTACCCTAGT TTTATCTG CACTTCTCGC chr3R:9683431-9683551 28 1.50e-04 AAATTTTCAT CTTATCTA TGCCTCTTAT chrX:4454732-4454852 73 1.50e-04 TGCCTGATTT CTTATCTA ATGCCTAATG chr3R:23789493-23789613 44 1.68e-04 ACATCCAAGT CTTATCGA CAGTGGGTTT chr3R:9632129-9632249 101 1.68e-04 CACCAACAGC CTTATCGA TGGAGTCATC chrX:13804558-13804678 64 1.68e-04 GCCAACAATG CTTATCGA CGAAGTGAGA chr2R:20560497-20560617 68 1.68e-04 GCTTCAGATA CTTATCGA AGAACAAACC chr3R:9398995-9399115 98 2.00e-04 CACCGCAGCG GTTATCTG CACGGTGGCG chr3R:30780611-30780731 15 2.00e-04 CCTGATCGAG GTTATCTG CAAAGGGAAG chr3R:6932060-6932180 82 2.00e-04 CAGAGGTATC CGTATCTC CGCTGGCTTT chr3R:9684266-9684386 71 2.00e-04 AACGACACAG GTTATCTG TCACAGCCTA chr2R:12170944-12171064 15 2.00e-04 GAATCTTCTG GTTATCTG GCTGCGCCAC chr2R:6505814-6505934 70 2.48e-04 CCCACGTTGA TTTATCTC GTTTAAGTGA chrX:15713368-15713488 16 2.48e-04 CCTCCGCTCC TTTATCTC TCTTTTCGCC chr3L:8452833-8452953 64 2.48e-04 TACGGATCTC TTTATCTC TTCCAATGAA chr2L:22218115-22218235 16 2.66e-04 CTACTTTTCG TTTATCGC AAGCATTTTC chr2R:20899967-20900087 99 2.66e-04 CAAACATGAA TTTATCGC GCAAGCAATT chrX:16688827-16688947 41 2.83e-04 CCCAGATACA GTTATCTC CACAGATATC chr2R:12614754-12614874 4 2.83e-04 AAC GTTATCTC AGAGTGGTTT chr3L:14583944-14584064 58 2.98e-04 aatcgccatc gttatcgc CGCCCATATC chr3L:14556190-14556310 99 3.15e-04 AAGATTCAAA TGTATCTG TAGATGAGCA chr2R:11609336-11609456 6 3.15e-04 gtatc tgtatctg tatttgtaAA chr2R:6504502-6504622 45 3.15e-04 TGCAGGCATT TGTATCTG GCAGATACGC chr3R:22455251-22455371 11 3.47e-04 TGTGTAATCC CGTATCTA TCTGGCATCA chrX:423475-423595 81 3.47e-04 ATTCGGGAAC TGTATCGG GAATCGGTTA chr3L:9037649-9037769 33 3.85e-04 GATAGCCGAT CGTATCGA TTACACACCG chr2L:5195445-5195565 74 4.49e-04 GGGATCGATT TGTATCTC AGATATATTT chrX:11793546-11793666 35 4.84e-04 CTGTAATCGC GTTATCTA AGCGCGCGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCKS MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16818879-16818999 1.7e-05 49_[+5]_63 chr2R:15556042-15556162 1.7e-05 86_[+5]_26 chr2L:6617292-6617412 1.7e-05 67_[+5]_45 chr2R:13228843-13228963 3.2e-05 73_[+5]_39 chr3L:17411377-17411497 3.2e-05 52_[+5]_60 chr2R:22244922-22245042 3.2e-05 105_[+5]_7 chr2L:2362307-2362427 3.2e-05 14_[+5]_98 chr2L:12065247-12065367 3.2e-05 56_[+5]_56 chr2R:17479800-17479920 3.2e-05 44_[+5]_68 chr2R:20129669-20129789 3.2e-05 41_[+5]_71 chr2R:6680264-6680384 5e-05 45_[+5]_67 chrX:766167-766287 5e-05 99_[+5]_13 chr2L:7585073-7585193 5e-05 17_[+5]_95 chr2R:24273551-24273671 6.6e-05 39_[+5]_73 chr3L:21472021-21472141 6.6e-05 94_[+5]_18 chr3R:9458947-9459067 6.6e-05 103_[+5]_9 chr3L:11035153-11035273 6.6e-05 107_[+5]_5 chr3L:5853721-5853841 6.6e-05 32_[+5]_80 chr3R:5056149-5056269 8.1e-05 62_[+5]_50 chr2L:14045823-14045943 8.1e-05 81_[+5]_31 chrX:4585447-4585567 8.1e-05 29_[+5]_83 chr2L:9874618-9874738 8.1e-05 96_[+5]_16 chrX:2408903-2409023 0.00011 57_[+5]_55 chrX:2512089-2512209 0.00011 49_[+5]_63 chrX:15487790-15487910 0.00011 78_[+5]_34 chr3R:9683431-9683551 0.00015 27_[+5]_85 chrX:4454732-4454852 0.00015 72_[+5]_40 chr3R:23789493-23789613 0.00017 43_[+5]_69 chr3R:9632129-9632249 0.00017 100_[+5]_12 chrX:13804558-13804678 0.00017 63_[+5]_49 chr2R:20560497-20560617 0.00017 67_[+5]_45 chr3R:9398995-9399115 0.0002 97_[+5]_15 chr3R:30780611-30780731 0.0002 14_[+5]_98 chr3R:6932060-6932180 0.0002 81_[+5]_31 chr3R:9684266-9684386 0.0002 70_[+5]_42 chr2R:12170944-12171064 0.0002 14_[+5]_98 chr2R:6505814-6505934 0.00025 69_[+5]_43 chrX:15713368-15713488 0.00025 15_[+5]_97 chr3L:8452833-8452953 0.00025 63_[+5]_49 chr2L:22218115-22218235 0.00027 15_[+5]_97 chr2R:20899967-20900087 0.00027 98_[+5]_14 chrX:16688827-16688947 0.00028 40_[+5]_72 chr2R:12614754-12614874 0.00028 3_[+5]_109 chr3L:14583944-14584064 0.0003 57_[+5]_55 chr3L:14556190-14556310 0.00032 98_[+5]_14 chr2R:11609336-11609456 0.00032 5_[+5]_107 chr2R:6504502-6504622 0.00032 44_[+5]_68 chr3R:22455251-22455371 0.00035 10_[+5]_102 chrX:423475-423595 0.00035 80_[+5]_32 chr3L:9037649-9037769 0.00038 32_[+5]_80 chr2L:5195445-5195565 0.00045 73_[+5]_39 chrX:11793546-11793666 0.00048 34_[+5]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCKS MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTATCKS width=8 seqs=52 chrX:16818879-16818999 ( 50) CTTATCTG 1 chr2R:15556042-15556162 ( 87) CTTATCTG 1 chr2L:6617292-6617412 ( 68) CTTATCTG 1 chr2R:13228843-13228963 ( 74) CTTATCGG 1 chr3L:17411377-17411497 ( 53) CTTATCGG 1 chr2R:22244922-22245042 ( 106) CTTATCGG 1 chr2L:2362307-2362427 ( 15) CTTATCGG 1 chr2L:12065247-12065367 ( 57) CTTATCGG 1 chr2R:17479800-17479920 ( 45) CTTATCGG 1 chr2R:20129669-20129789 ( 42) CTTATCGG 1 chr2R:6680264-6680384 ( 46) CTTATCTC 1 chrX:766167-766287 ( 100) CTTATCTC 1 chr2L:7585073-7585193 ( 18) CTTATCTC 1 chr2R:24273551-24273671 ( 40) CTTATCGC 1 chr3L:21472021-21472141 ( 95) CTTATCGC 1 chr3R:9458947-9459067 ( 104) CTTATCGC 1 chr3L:11035153-11035273 ( 108) CTTATCGC 1 chr3L:5853721-5853841 ( 33) CTTATCGC 1 chr3R:5056149-5056269 ( 63) CGTATCTG 1 chr2L:14045823-14045943 ( 82) CGTATCTG 1 chrX:4585447-4585567 ( 30) CGTATCTG 1 chr2L:9874618-9874738 ( 97) CGTATCTG 1 chrX:2408903-2409023 ( 58) CGTATCGG 1 chrX:2512089-2512209 ( 50) TTTATCTG 1 chrX:15487790-15487910 ( 79) TTTATCTG 1 chr3R:9683431-9683551 ( 28) CTTATCTA 1 chrX:4454732-4454852 ( 73) CTTATCTA 1 chr3R:23789493-23789613 ( 44) CTTATCGA 1 chr3R:9632129-9632249 ( 101) CTTATCGA 1 chrX:13804558-13804678 ( 64) CTTATCGA 1 chr2R:20560497-20560617 ( 68) CTTATCGA 1 chr3R:9398995-9399115 ( 98) GTTATCTG 1 chr3R:30780611-30780731 ( 15) GTTATCTG 1 chr3R:6932060-6932180 ( 82) CGTATCTC 1 chr3R:9684266-9684386 ( 71) GTTATCTG 1 chr2R:12170944-12171064 ( 15) GTTATCTG 1 chr2R:6505814-6505934 ( 70) TTTATCTC 1 chrX:15713368-15713488 ( 16) TTTATCTC 1 chr3L:8452833-8452953 ( 64) TTTATCTC 1 chr2L:22218115-22218235 ( 16) TTTATCGC 1 chr2R:20899967-20900087 ( 99) TTTATCGC 1 chrX:16688827-16688947 ( 41) GTTATCTC 1 chr2R:12614754-12614874 ( 4) GTTATCTC 1 chr3L:14583944-14584064 ( 58) GTTATCGC 1 chr3L:14556190-14556310 ( 99) TGTATCTG 1 chr2R:11609336-11609456 ( 6) TGTATCTG 1 chr2R:6504502-6504622 ( 45) TGTATCTG 1 chr3R:22455251-22455371 ( 11) CGTATCTA 1 chrX:423475-423595 ( 81) TGTATCGG 1 chr3L:9037649-9037769 ( 33) CGTATCGA 1 chr2L:5195445-5195565 ( 74) TGTATCTC 1 chrX:11793546-11793666 ( 35) GTTATCTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCKS MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2487 E= 1.0e+004 -1234 138 -59 -21 -1234 -1234 11 149 -1234 -1234 -1234 191 191 -1234 -1234 -1234 -1234 -1234 -1234 191 -1234 208 -1234 -1234 -1234 -1234 87 111 -62 55 106 -1234 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCKS MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 1.0e+004 0.000000 0.615385 0.153846 0.230769 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.423077 0.576923 0.173077 0.346154 0.480769 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTATCKS MEME-5 regular expression -------------------------------------------------------------------------------- [CT][TG]TATC[TG][GC] -------------------------------------------------------------------------------- Time 32.17 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:3620738-3620858 2.94e-01 120 chr3R:24027361-24027481 1.11e-01 8_[+3(9.63e-05)]_44_[+3(3.34e-05)]_\ 52 chr2R:14310661-14310781 4.24e-01 120 chr2L:17269848-17269968 1.09e-01 120 chrX:10583510-10583630 2.90e-01 120 chr3L:9485471-9485591 4.39e-02 120 chr3L:21594242-21594362 2.89e-01 120 chr3L:5853721-5853841 4.32e-03 32_[+5(6.56e-05)]_38_[+1(1.70e-05)]_\ 34 chr2L:5202661-5202781 4.89e-01 120 chr2L:5195445-5195565 9.11e-02 120 chr2R:14231024-14231144 2.83e-02 120 chr2L:9128783-9128903 1.40e-01 120 chr2R:6504502-6504622 3.88e-03 120 chr2R:20129669-20129789 2.05e-03 41_[+5(3.24e-05)]_71 chr2R:12614754-12614874 5.56e-03 120 chr2L:11418860-11418980 3.57e-01 120 chr3R:20573884-20574004 1.10e-01 94_[+1(3.20e-05)]_18 chr3L:21298792-21298912 6.09e-01 120 chr3L:8527334-8527454 1.16e-03 18_[+2(2.76e-05)]_94 chr3L:22869257-22869377 2.03e-01 120 chr2R:14167634-14167754 2.78e-03 50_[+2(3.91e-05)]_62 chr2R:12209077-12209197 6.27e-01 120 chrX:16688827-16688947 1.14e-01 120 chr3R:17081312-17081432 1.88e-02 111_[+4(6.24e-05)]_1 chr2R:17479800-17479920 9.12e-02 44_[+5(3.24e-05)]_68 chr2R:12170944-12171064 2.16e-01 120 chr3L:2197524-2197644 9.18e-02 84_[+1(6.38e-05)]_28 chr2L:13231558-13231678 2.82e-03 46_[+1(3.20e-05)]_66 chr3L:22204666-22204786 1.54e-01 97_[+3(9.63e-05)]_15 chr2L:6617292-6617412 7.15e-02 67_[+5(1.74e-05)]_45 chrX:20639477-20639597 1.13e-01 120 chrX:7082518-7082638 9.19e-01 120 chr3L:22168660-22168780 2.87e-01 120 chr2L:18799777-18799897 1.12e-01 120 chr2L:356410-356530 2.20e-01 56_[+2(8.37e-05)]_56 chr3R:4487063-4487183 2.47e-01 120 chr3R:18118808-18118928 6.38e-01 120 chr3L:11035153-11035273 5.62e-02 107_[+5(6.56e-05)]_5 chrX:10493946-10494066 3.31e-03 52_[+1(3.20e-05)]_49_[+2(1.30e-05)]_\ 3 chr2L:28857-28977 4.53e-01 120 chr3L:14406762-14406882 5.06e-03 99_[+3(3.34e-05)]_13 chr2R:2079240-2079360 2.65e-01 120 chr2R:16520771-16520891 1.61e-01 120 chr3L:14946194-14946314 6.18e-01 120 chr2L:9992588-9992708 1.64e-03 93_[+2(2.76e-05)]_19 chr2L:12065247-12065367 1.13e-02 2_[+3(6.30e-05)]_46_[+5(3.24e-05)]_\ 56 chr3R:16685255-16685375 7.92e-01 120 chr2R:20560497-20560617 4.43e-03 1_[+2(1.30e-05)]_111 chrX:14221459-14221579 2.99e-02 93_[+3(9.63e-05)]_19 chr2R:18694157-18694277 2.33e-01 120 chr2L:16455235-16455355 1.98e-02 102_[+3(6.30e-05)]_10 chr3L:14105119-14105239 9.19e-01 120 chrX:1480761-1480881 7.12e-01 120 chr2R:15556042-15556162 2.67e-02 86_[+5(1.74e-05)]_26 chr3L:22067976-22068096 1.46e-02 120 chr2L:7585073-7585193 9.99e-02 17_[+5(5.02e-05)]_95 chr2R:7592738-7592858 4.02e-04 8_[+1(4.88e-05)]_54_[+4(1.15e-05)]_\ 42 chr3L:25849843-25849963 6.05e-01 120 chrX:15487790-15487910 2.83e-02 48_[+3(6.30e-05)]_64 chr2L:4893536-4893656 3.39e-01 120 chrX:3838081-3838201 6.37e-02 95_[+1(1.70e-05)]_17 chrX:4454732-4454852 2.98e-01 120 chr3L:8452833-8452953 7.55e-02 120 chr3L:14944414-14944534 1.07e-02 34_[+2(2.76e-05)]_78 chrX:766167-766287 1.46e-01 99_[+5(5.02e-05)]_13 chr2R:12965411-12965531 2.24e-01 120 chr3L:1772735-1772855 5.65e-01 120 chr3L:8454505-8454625 5.20e-01 120 chrX:2512089-2512209 5.41e-02 120 chr2R:8226541-8226661 2.12e-01 65_[+2(6.69e-05)]_47 chr2L:5053687-5053807 2.68e-02 51_[+4(1.15e-05)]_61 chr3L:19288675-19288795 4.18e-01 120 chr2R:19661945-19662065 2.02e-01 45_[+1(8.34e-05)]_67 chr3L:14583944-14584064 4.30e-01 120 chr3R:8187601-8187721 8.95e-03 7_[+3(6.30e-05)]_105 chrX:10809450-10809570 2.32e-01 120 chr3R:9684266-9684386 7.62e-02 120 chr2L:12551535-12551655 1.07e-01 67_[+4(7.54e-05)]_45 chr3L:13408652-13408772 5.79e-03 43_[+4(4.91e-05)]_41_[+1(4.88e-05)]_\ 20 chr3L:21266399-21266519 2.62e-01 120 chr2L:1948105-1948225 3.20e-01 120 chr3R:30700252-30700372 4.13e-02 120 chr2L:9705430-9705550 1.37e-02 8_[+4(1.15e-05)]_1_[+4(1.15e-05)]_\ 58_[+4(1.15e-05)]_29 chrX:19775204-19775324 2.62e-01 120 chr3R:4204318-4204438 1.08e-01 104_[+1(3.20e-05)]_8 chr2L:9874618-9874738 2.40e-01 96_[+5(8.06e-05)]_16 chrX:22836594-22836714 1.44e-02 99_[+2(2.76e-05)]_13 chr2L:8839297-8839417 8.83e-02 120 chr3R:6932060-6932180 1.25e-01 120 chr3L:20981407-20981527 1.65e-02 85_[+3(3.34e-05)]_27 chr2L:2362307-2362427 3.92e-02 14_[+5(3.24e-05)]_98 chr2L:1958359-1958479 7.67e-01 120 chr3R:28568283-28568403 5.34e-02 73_[+3(9.63e-05)]_39 chr3R:5262557-5262677 5.13e-01 120 chr2R:13555779-13555899 1.64e-01 120 chr2R:4613764-4613884 7.67e-01 120 chr2R:11609336-11609456 1.17e-01 120 chrX:7742181-7742301 9.74e-06 57_[+1(1.70e-05)]_18_[+4(1.15e-05)]_\ 29 chr2L:514232-514352 2.45e-02 4_[+3(3.34e-05)]_108 chrX:16793561-16793681 4.21e-03 84_[+4(2.27e-05)]_28 chr2L:8236518-8236638 2.85e-02 120 chr3R:30775850-30775970 1.06e-02 62_[+3(3.34e-05)]_50 chrX:7044814-7044934 2.01e-01 120 chr3L:16018029-16018149 2.27e-01 120 chrX:4585447-4585567 1.89e-01 29_[+5(8.06e-05)]_83 chr2L:8116772-8116892 5.51e-04 54_[+3(3.34e-05)]_26_[+2(1.30e-05)]_\ 24 chr3R:23341881-23342001 2.72e-01 120 chr2L:14045823-14045943 7.56e-02 81_[+5(8.06e-05)]_31 chr2L:18778756-18778876 2.43e-01 62_[+1(8.34e-05)]_50 chrX:592994-593114 6.58e-02 26_[+2(1.30e-05)]_86 chr3R:5684523-5684643 3.72e-01 120 chrX:13282618-13282738 7.95e-02 120 chr3L:11253998-11254118 2.18e-01 120 chr4:846255-846375 1.87e-01 120 chr2L:5277418-5277538 9.66e-01 120 chr2R:18305979-18306099 1.50e-01 120 chr3L:618065-618185 6.84e-01 120 chr3L:5834926-5835046 2.75e-01 120 chrX:13804558-13804678 5.92e-02 120 chr3L:14990027-14990147 9.36e-02 120 chr3R:30740836-30740956 1.43e-01 20_[+3(6.30e-05)]_92 chr2R:9928016-9928136 4.36e-01 120 chr3R:14474180-14474300 1.14e-01 120 chr3R:29301381-29301501 1.65e-02 7_[+3(6.30e-05)]_105 chr3R:5073874-5073994 1.21e-01 88_[+3(9.63e-05)]_24 chr3R:6916839-6916959 8.76e-02 120 chr2R:13448770-13448890 5.39e-01 120 chr3L:1726889-1727009 4.25e-02 79_[+3(3.34e-05)]_33 chr2R:9977112-9977232 9.19e-02 70_[+1(4.88e-05)]_42 chr2R:5713510-5713630 2.77e-02 48_[+3(9.63e-05)]_64 chr2R:7595445-7595565 1.14e-01 120 chr2R:9231223-9231343 2.01e-01 120 chr2L:1890445-1890565 6.08e-02 120 chr3L:1727697-1727817 3.15e-01 120 chrX:719197-719317 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chr3L:17411377-17411497 4.01e-03 52_[+5(3.24e-05)]_29_[+4(1.15e-05)]_\ 23 chr2L:9587516-9587636 3.33e-01 120 chr2L:20561937-20562057 4.36e-01 120 chr3R:15474011-15474131 7.50e-01 120 chr2R:6680264-6680384 6.20e-02 45_[+5(5.02e-05)]_67 chr3R:4866256-4866376 4.05e-02 81_[+2(6.69e-05)]_31 chr2L:1965844-1965964 1.83e-02 94_[+4(4.91e-05)]_18 chr2R:12530707-12530827 5.15e-01 120 chr3L:9002601-9002721 2.67e-01 120 chr2R:19780764-19780884 1.05e-01 73_[+1(8.34e-05)]_39 chrX:11818129-11818249 6.89e-02 62_[+1(1.70e-05)]_50 chr2R:13228843-13228963 7.27e-03 58_[+5(1.74e-05)]_7_[+5(3.24e-05)]_\ 39 chr2R:23206098-23206218 1.16e-01 120 chr3L:15595289-15595409 6.21e-01 120 chr3R:4545980-4546100 2.06e-01 120 chrX:18303740-18303860 4.39e-01 120 chr2R:24273551-24273671 8.11e-05 39_[+5(6.56e-05)]_57_[+4(2.27e-05)]_\ 8 chr2R:15886654-15886774 5.55e-01 120 chr3L:14556190-14556310 3.34e-04 29_[+2(5.20e-05)]_5_[+1(4.88e-05)]_\ 70 chrX:409531-409651 1.53e-03 31_[+1(1.70e-05)]_27_[+2(1.30e-05)]_\ 46 chr2L:21083122-21083242 7.11e-02 40_[+3(3.34e-05)]_72 chr3R:13879475-13879595 1.94e-02 75_[+2(2.76e-05)]_37 chr3R:23789493-23789613 2.17e-02 120 chr3R:22455251-22455371 4.29e-01 120 chr2R:1341012-1341132 2.83e-01 120 chrX:11793546-11793666 2.14e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n05.farnam.hpc.yale.internal ********************************************************************************