******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1529.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:347744-347864 1.0000 120 chr3R:16309486-16309606 1.0000 120 chr2L:16299544-16299664 1.0000 120 chr3L:11046790-11046910 1.0000 120 chr3L:3819133-3819253 1.0000 120 chrX:16421888-16422008 1.0000 120 chr2R:15359772-15359892 1.0000 120 chr3L:8527595-8527715 1.0000 120 chr3L:639692-639812 1.0000 120 chr3R:11968337-11968457 1.0000 120 chr3L:8705455-8705575 1.0000 120 chr2L:5987035-5987155 1.0000 120 chr3R:16274556-16274676 1.0000 120 chr2L:6724104-6724224 1.0000 120 chr3R:30252458-30252578 1.0000 120 chr2L:18968060-18968180 1.0000 120 chr3L:8527809-8527929 1.0000 120 chr3R:8250286-8250406 1.0000 120 chr2R:16155994-16156114 1.0000 120 chr2R:11592259-11592379 1.0000 120 chr3R:8362479-8362599 1.0000 120 chr2R:10673098-10673218 1.0000 120 chr2L:7134222-7134342 1.0000 120 chr2R:10813398-10813518 1.0000 120 chr2R:23601831-23601951 1.0000 120 chr3R:20714547-20714667 1.0000 120 chr3R:18243082-18243202 1.0000 120 chr2L:11207596-11207716 1.0000 120 chr2R:6719820-6719940 1.0000 120 chr2L:13666633-13666753 1.0000 120 chr2L:1646686-1646806 1.0000 120 chr2L:3770187-3770307 1.0000 120 chr2L:8290201-8290321 1.0000 120 chr2R:6960478-6960598 1.0000 120 chr3L:639892-640012 1.0000 120 chr2L:9137045-9137165 1.0000 120 chrX:16253339-16253459 1.0000 120 chr2L:19370220-19370340 1.0000 120 chr2R:16846057-16846177 1.0000 120 chr2R:6676190-6676310 1.0000 120 chrX:3152157-3152277 1.0000 120 chr3L:19018571-19018691 1.0000 120 chr2L:8080814-8080934 1.0000 120 chr3L:4400005-4400125 1.0000 120 chr3L:14172706-14172826 1.0000 120 chrX:3073730-3073850 1.0000 120 chr3R:30252665-30252785 1.0000 120 chrX:3024668-3024788 1.0000 120 chr3R:21347938-21348058 1.0000 120 chr2L:107842-107962 1.0000 120 chr2R:16847054-16847174 1.0000 120 chrX:9644948-9645068 1.0000 120 chr3R:19182940-19183060 1.0000 120 chr3L:19056875-19056995 1.0000 120 chr2R:17077983-17078103 1.0000 120 chr2R:13474945-13475065 1.0000 120 chr2L:4031954-4032074 1.0000 120 chr3R:20277008-20277128 1.0000 120 chr3R:18785892-18786012 1.0000 120 chr3L:11491967-11492087 1.0000 120 chr3L:9333843-9333963 1.0000 120 chr3L:754718-754838 1.0000 120 chr2R:23659697-23659817 1.0000 120 chr3L:17937471-17937591 1.0000 120 chr2L:18496952-18497072 1.0000 120 chr2R:24897736-24897856 1.0000 120 chr3R:12701406-12701526 1.0000 120 chr2L:3624979-3625099 1.0000 120 chr3L:10428189-10428309 1.0000 120 chr2R:20195223-20195343 1.0000 120 chr2L:470042-470162 1.0000 120 chr2L:16299744-16299864 1.0000 120 chrX:22509189-22509309 1.0000 120 chrX:21028218-21028338 1.0000 120 chr3L:9101802-9101922 1.0000 120 chr3R:13893035-13893155 1.0000 120 chrX:7227451-7227571 1.0000 120 chr3R:29087607-29087727 1.0000 120 chr3R:6229213-6229333 1.0000 120 chr2R:13993281-13993401 1.0000 120 chr3L:22728210-22728330 1.0000 120 chr3R:14744467-14744587 1.0000 120 chr3L:3380588-3380708 1.0000 120 chrX:12923388-12923508 1.0000 120 chr3R:22573718-22573838 1.0000 120 chr2R:19860349-19860469 1.0000 120 chr3R:28857428-28857548 1.0000 120 chr3R:10498723-10498843 1.0000 120 chr2R:7477345-7477465 1.0000 120 chr3L:3059438-3059558 1.0000 120 chr2R:12729325-12729445 1.0000 120 chr3R:30865568-30865688 1.0000 120 chr3L:8925817-8925937 1.0000 120 chr2R:13305658-13305778 1.0000 120 chr3R:17828806-17828926 1.0000 120 chrX:18238042-18238162 1.0000 120 chr2R:7952836-7952956 1.0000 120 chr2R:10212480-10212600 1.0000 120 chr2L:7525401-7525521 1.0000 120 chr3L:21259403-21259523 1.0000 120 chr3R:5103761-5103881 1.0000 120 chr2L:20944420-20944540 1.0000 120 chr2R:11803419-11803539 1.0000 120 chr2R:21251546-21251666 1.0000 120 chr3R:16907948-16908068 1.0000 120 chr2R:14971304-14971424 1.0000 120 chr2L:2749274-2749394 1.0000 120 chr2L:14537595-14537715 1.0000 120 chr3L:8683903-8684023 1.0000 120 chr2R:14485461-14485581 1.0000 120 chr3L:17047875-17047995 1.0000 120 chr3L:19073321-19073441 1.0000 120 chr3L:14354653-14354773 1.0000 120 chr3R:21598082-21598202 1.0000 120 chr3R:27946741-27946861 1.0000 120 chr3L:10858591-10858711 1.0000 120 chr3R:14598113-14598233 1.0000 120 chrX:5745198-5745318 1.0000 120 chr3L:22910035-22910155 1.0000 120 chrX:17782086-17782206 1.0000 120 chr3L:7859829-7859949 1.0000 120 chr3R:21263278-21263398 1.0000 120 chr2L:3345776-3345896 1.0000 120 chr2L:3851450-3851570 1.0000 120 chr3R:28586951-28587071 1.0000 120 chr3L:1169784-1169904 1.0000 120 chr3L:16429572-16429692 1.0000 120 chr2L:3856425-3856545 1.0000 120 chr2R:15134308-15134428 1.0000 120 chr3L:3873174-3873294 1.0000 120 chr2L:14245593-14245713 1.0000 120 chr3R:25885239-25885359 1.0000 120 chrX:14634817-14634937 1.0000 120 chrX:17298084-17298204 1.0000 120 chr4:1199278-1199398 1.0000 120 chr3R:29083938-29084058 1.0000 120 chr2R:21527430-21527550 1.0000 120 chrX:14622342-14622462 1.0000 120 chr3L:10391115-10391235 1.0000 120 chr3L:10350854-10350974 1.0000 120 chr2L:20464491-20464611 1.0000 120 chr2L:12498632-12498752 1.0000 120 chr3L:3978088-3978208 1.0000 120 chr2R:13570030-13570150 1.0000 120 chr2L:20327552-20327672 1.0000 120 chrX:4581882-4582002 1.0000 120 chrX:18101193-18101313 1.0000 120 chr3L:14194227-14194347 1.0000 120 chr3R:21865184-21865304 1.0000 120 chr3R:28852035-28852155 1.0000 120 chr2L:6818487-6818607 1.0000 120 chr2R:14217003-14217123 1.0000 120 chr2R:6532649-6532769 1.0000 120 chr3L:8058412-8058532 1.0000 120 chrX:4609791-4609911 1.0000 120 chr3R:14386287-14386407 1.0000 120 chr3R:31549202-31549322 1.0000 120 chr2R:12644254-12644374 1.0000 120 chr3R:24293293-24293413 1.0000 120 chr3R:14723685-14723805 1.0000 120 chr3R:29480077-29480197 1.0000 120 chr3L:14328431-14328551 1.0000 120 chr2L:4915997-4916117 1.0000 120 chr2R:19874659-19874779 1.0000 120 chr2R:9543711-9543831 1.0000 120 chr2L:7566712-7566832 1.0000 120 chrX:20644150-20644270 1.0000 120 chr3L:19899093-19899213 1.0000 120 chr3R:21594450-21594570 1.0000 120 chr3R:27826319-27826439 1.0000 120 chrX:13645173-13645293 1.0000 120 chr4:225998-226118 1.0000 120 chr3L:16054164-16054284 1.0000 120 chr2R:14906326-14906446 1.0000 120 chr2L:8423937-8424057 1.0000 120 chr3R:13448495-13448615 1.0000 120 chr2L:827676-827796 1.0000 120 chr3L:7961381-7961501 1.0000 120 chr3R:31687969-31688089 1.0000 120 chr2R:22540032-22540152 1.0000 120 chr3L:13032263-13032383 1.0000 120 chr3L:21130963-21131083 1.0000 120 chr2R:10059091-10059211 1.0000 120 chr3L:517400-517520 1.0000 120 chr2R:7473795-7473915 1.0000 120 chr3L:4272289-4272409 1.0000 120 chrX:3134388-3134508 1.0000 120 chr2R:16091938-16092058 1.0000 120 chr3R:23947145-23947265 1.0000 120 chr3R:30918917-30919037 1.0000 120 chr3R:11617540-11617660 1.0000 120 chr2R:10681383-10681503 1.0000 120 chr2R:13482150-13482270 1.0000 120 chr3L:16640599-16640719 1.0000 120 chr3L:1602760-1602880 1.0000 120 chr3R:6665453-6665573 1.0000 120 chr2L:6461649-6461769 1.0000 120 chr3L:10428969-10429089 1.0000 120 chr3L:17016445-17016565 1.0000 120 chr3R:22039591-22039711 1.0000 120 chr3R:13549605-13549725 1.0000 120 chr3L:5926061-5926181 1.0000 120 chr3R:21561453-21561573 1.0000 120 chr2L:1911404-1911524 1.0000 120 chr3R:8954982-8955102 1.0000 120 chr2R:23180957-23181077 1.0000 120 chr2L:18505661-18505781 1.0000 120 chr3R:29581555-29581675 1.0000 120 chr3R:19274124-19274244 1.0000 120 chr2L:1094886-1095006 1.0000 120 chr3R:17655173-17655293 1.0000 120 chr2L:10543518-10543638 1.0000 120 chr2R:14803502-14803622 1.0000 120 chr2R:13924325-13924445 1.0000 120 chr2L:3003561-3003681 1.0000 120 chr2R:10303678-10303798 1.0000 120 chr2R:12452981-12453101 1.0000 120 chr3R:19114004-19114124 1.0000 120 chr2L:9190439-9190559 1.0000 120 chr3L:11273687-11273807 1.0000 120 chr2L:17583079-17583199 1.0000 120 chrX:10582188-10582308 1.0000 120 chr2L:12465869-12465989 1.0000 120 chr3R:15983672-15983792 1.0000 120 chr3R:7103360-7103480 1.0000 120 chrX:11660617-11660737 1.0000 120 chr3L:16452419-16452539 1.0000 120 chr2L:3587425-3587545 1.0000 120 chr2L:6283430-6283550 1.0000 120 chrX:9652117-9652237 1.0000 120 chr3L:905123-905243 1.0000 120 chrX:12454501-12454621 1.0000 120 chr2L:20890056-20890176 1.0000 120 chr3R:5746783-5746903 1.0000 120 chr2L:12487452-12487572 1.0000 120 chr2R:6610306-6610426 1.0000 120 chr3L:14190342-14190462 1.0000 120 chr3R:4846919-4847039 1.0000 120 chr2R:22387673-22387793 1.0000 120 chr3R:25888802-25888922 1.0000 120 chrX:19371625-19371745 1.0000 120 chr3R:20542398-20542518 1.0000 120 chr3R:10567021-10567141 1.0000 120 chr3R:23300709-23300829 1.0000 120 chrX:5639255-5639375 1.0000 120 chr2L:16523211-16523331 1.0000 120 chrX:3397050-3397170 1.0000 120 chr3R:27138139-27138259 1.0000 120 chr2L:3647750-3647870 1.0000 120 chr2R:9681821-9681941 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG1529/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1529.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.313 C 0.186 G 0.188 T 0.314 Background letter frequencies (from file dataset with add-one prior applied): A 0.313 C 0.186 G 0.188 T 0.314 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCRGYBGC MEME-1 width = 8 sites = 18 llr = 175 E-value = 3.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCRGYBGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::4::::: pos.-specific C :a2:62:a probability G a:2a:4a: matrix T ::2:43:: bits 2.4 ** * ** 2.2 ** * ** 1.9 ** * ** 1.7 ** * ** Relative 1.5 ** * ** Entropy 1.2 ** ** ** (14.0 bits) 1.0 ** ** ** 0.7 ** ***** 0.5 ** ***** 0.2 ** ***** 0.0 -------- Multilevel GCAGCGGC consensus G TT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGYBGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17937471-17937591 46 4.03e-06 TTCATTTCAA GCGGCGGC TCTACCAtct chr2L:19370220-19370340 38 4.03e-06 TGTGAAAAGG GCGGCGGC GGGGTGACGA chr3R:28852035-28852155 30 5.52e-06 TCTTGCTAAT GCCGCGGC TTACGTTGTA chr3L:639692-639812 46 8.01e-06 TTTCATAGCT GCAGCCGC ATGGTTGTGC chrX:11660617-11660737 103 1.37e-05 GTCTGCATCA GCAGCTGC GACAGCGACG chr2R:10303678-10303798 109 1.37e-05 AAATATTTGT GCAGCTGC CCCA chr3L:5926061-5926181 12 1.37e-05 TCTTTTAGGT GCAGCTGC ATATTCAAAT chr2R:12729325-12729445 100 1.62e-05 TGTGTATATG GCTGCGGC TTTTAGCTTT chr3L:19018571-19018691 105 2.30e-05 ATAACCGCGG GCAGTGGC GTTGCTTA chr2L:3770187-3770307 78 2.30e-05 TACTGTTTTT GCAGTGGC AGCAGCCACA chr3L:21259403-21259523 79 2.45e-05 CCGGCAGTAA GCCGCCGC ATTTTGGACA chr3R:10567021-10567141 81 2.70e-05 AGATAAGGCA GCGGTGGC GCGCAATTGT chr3R:29083938-29084058 104 3.21e-05 TGTGTCGAGT GCCGTGGC GAAAGAGAC chr2R:10673098-10673218 84 3.46e-05 ACCTCTCTCT GCTGCCGC AACATGTTGC chr3R:21347938-21348058 79 3.88e-05 AGTATGAAAT GCAGTCGC ATAAAATATT chr2L:18496952-18497072 17 4.30e-05 TGTGTTTTAA GCTGCTGC TAGGAACGAC chr2L:16523211-16523331 98 5.26e-05 TGCCGGCGTC GCAGTTGC TGCATATTTG chr3L:17047875-17047995 32 6.11e-05 AATGCATATA GCGGTTGC TCTGGCGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGYBGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17937471-17937591 4e-06 45_[+1]_67 chr2L:19370220-19370340 4e-06 37_[+1]_75 chr3R:28852035-28852155 5.5e-06 29_[+1]_83 chr3L:639692-639812 8e-06 45_[+1]_67 chrX:11660617-11660737 1.4e-05 102_[+1]_10 chr2R:10303678-10303798 1.4e-05 108_[+1]_4 chr3L:5926061-5926181 1.4e-05 11_[+1]_101 chr2R:12729325-12729445 1.6e-05 99_[+1]_13 chr3L:19018571-19018691 2.3e-05 104_[+1]_8 chr2L:3770187-3770307 2.3e-05 77_[+1]_35 chr3L:21259403-21259523 2.4e-05 78_[+1]_34 chr3R:10567021-10567141 2.7e-05 80_[+1]_32 chr3R:29083938-29084058 3.2e-05 103_[+1]_9 chr2R:10673098-10673218 3.5e-05 83_[+1]_29 chr3R:21347938-21348058 3.9e-05 78_[+1]_34 chr2L:18496952-18497072 4.3e-05 16_[+1]_96 chr2L:16523211-16523331 5.3e-05 97_[+1]_15 chr3L:17047875-17047995 6.1e-05 31_[+1]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGYBGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCRGYBGC width=8 seqs=18 chr3L:17937471-17937591 ( 46) GCGGCGGC 1 chr2L:19370220-19370340 ( 38) GCGGCGGC 1 chr3R:28852035-28852155 ( 30) GCCGCGGC 1 chr3L:639692-639812 ( 46) GCAGCCGC 1 chrX:11660617-11660737 ( 103) GCAGCTGC 1 chr2R:10303678-10303798 ( 109) GCAGCTGC 1 chr3L:5926061-5926181 ( 12) GCAGCTGC 1 chr2R:12729325-12729445 ( 100) GCTGCGGC 1 chr3L:19018571-19018691 ( 105) GCAGTGGC 1 chr2L:3770187-3770307 ( 78) GCAGTGGC 1 chr3L:21259403-21259523 ( 79) GCCGCCGC 1 chr3R:10567021-10567141 ( 81) GCGGTGGC 1 chr3R:29083938-29084058 ( 104) GCCGTGGC 1 chr2R:10673098-10673218 ( 84) GCTGCCGC 1 chr3R:21347938-21348058 ( 79) GCAGTCGC 1 chr2L:18496952-18497072 ( 17) GCTGCTGC 1 chr2L:16523211-16523331 ( 98) GCAGTTGC 1 chr3L:17047875-17047995 ( 32) GCGGTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGYBGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 3.6e+002 -1081 -1081 241 -1081 -1081 243 -1081 -1081 51 -16 24 -91 -1081 -1081 241 -1081 -1081 172 -1081 31 -1081 26 124 9 -1081 -1081 241 -1081 -1081 243 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGYBGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 3.6e+002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.444444 0.166667 0.222222 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.611111 0.000000 0.388889 0.000000 0.222222 0.444444 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCRGYBGC MEME-1 regular expression -------------------------------------------------------------------------------- GC[AG]G[CT][GTC]GC -------------------------------------------------------------------------------- Time 7.57 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCMSKGM MEME-2 width = 8 sites = 35 llr = 296 E-value = 2.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCMSKGM MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::6:2:4 pos.-specific C 1:a461:6 probability G :a::43a: matrix T 9::::4:: bits 2.4 ** * 2.2 ** * 1.9 ** * 1.7 ** * Relative 1.5 ** * * Entropy 1.2 *** * ** (12.2 bits) 1.0 ***** ** 0.7 ***** ** 0.5 ***** ** 0.2 ***** ** 0.0 -------- Multilevel TGCACTGC consensus CGG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCMSKGM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6532649-6532769 89 1.79e-05 GTAGCTCCAG TGCCCGGC TCGCCCCCCT chr3L:14194227-14194347 10 1.79e-05 TAAATGAAA TGCACTGC AAACACACGA chr2R:15134308-15134428 92 1.79e-05 AATTGACTGC TGCACTGC GATGCAAGTA chr3L:16429572-16429692 28 1.79e-05 ATTTGCCTTT TGCCCGGC CAAATGACGT chr2R:10813398-10813518 95 1.79e-05 TGTGTTCAAA TGCACTGC TTTCAGCACA chr3R:6665453-6665573 89 3.60e-05 CAGAATTTAG TGCAGGGC GGATGAGTCG chr2L:3345776-3345896 33 3.60e-05 AACCACAAGT TGCAGGGC ACAGCGAAGG chr3R:10498723-10498843 110 3.60e-05 ACAATTTTCT TGCAGTGC ACA chrX:21028218-21028338 29 3.60e-05 GAACACATAG TGCAGGGC GCGTCCCGAT chr2R:13474945-13475065 16 3.60e-05 CGACACGCAC TGCAGGGC AAGAAAAAGT chr2L:5987035-5987155 98 3.60e-05 TGTTCCCTTT TGCCGGGC ATCGAGTGCG chr3L:8683903-8684023 9 4.26e-05 TGACCCAA TGCACCGC AAGTGGAAAA chr3R:15983672-15983792 38 7.27e-05 TACAATTGTT TGCCCTGA AAAATTAATG chr2L:17583079-17583199 16 7.27e-05 GGGGATTTGC TGCACTGA GCGGAAATGT chr2R:13924325-13924445 13 7.27e-05 GAAAAGAGGG TGCACTGA GAAAAATCTT chr2L:1911404-1911524 40 7.27e-05 GAAAATGATA TGCACTGA AAACAAGCGT chr3R:14386287-14386407 29 7.27e-05 ATTCAAAGTA TGCCCTGA ACTTTTTAAG chr3L:19056875-19056995 40 7.27e-05 ATGATGGAGC TGCACTGA AAGATACTTT chr3L:4400005-4400125 24 7.27e-05 CGTCTGCAAT TGCACGGA AAGAAAATTG chr3L:14354653-14354773 111 8.39e-05 CTCCAGACCC TGCACAGC TG chr2R:10303678-10303798 91 1.21e-04 ATGGTTCATT TGCCGTGA AAATATTTGT chr3L:3819133-3819253 45 1.21e-04 TTAGTAGGGC TGCCGGGA AGGCCCCGTT chr3R:27138139-27138259 33 1.43e-04 AGGTGTAATA TGCAGAGC ATGCAGTGGG chr3R:25888802-25888922 57 1.43e-04 ATAAAAAAGA TGCCGAGC ATTTAGATAA chr2L:20890056-20890176 66 1.43e-04 TTTCTTTCAG TGCACCGA TTCACCCATT chr3R:7103360-7103480 91 1.43e-04 AAATGTTACA TGCACCGA ATGTACAAAA chrX:13645173-13645293 32 1.43e-04 TTAAAGCAAC TGCAGAGC AAATTTACCA chr2L:9137045-9137165 50 1.43e-04 CAATTCTGTC TGCCCCGA TCCACACTGT chr2L:7134222-7134342 96 1.43e-04 CTAATTCAAT TGCACCGA ACTAGTTCTC chr3R:19114004-19114124 84 1.54e-04 ctttctcatt cgcactgc tgtcagctaa chr3L:8705455-8705575 8 1.54e-04 TTAGCAA CGCCCTGC TGATAATGAT chr2R:23180957-23181077 112 1.73e-04 GTGGTGGAGG TGCCCAGA T chr3L:7961381-7961501 101 1.73e-04 GGAGTTCGGG TGCCCAGA GCCCGGGTCG chrX:12923388-12923508 113 1.95e-04 CGTTATTTCT CGCAGTGC chr2R:6960478-6960598 10 1.95e-04 GCGATTACT CGCCGTGC GATGAGGTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCMSKGM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6532649-6532769 1.8e-05 88_[+2]_24 chr3L:14194227-14194347 1.8e-05 9_[+2]_103 chr2R:15134308-15134428 1.8e-05 91_[+2]_21 chr3L:16429572-16429692 1.8e-05 27_[+2]_85 chr2R:10813398-10813518 1.8e-05 94_[+2]_18 chr3R:6665453-6665573 3.6e-05 88_[+2]_24 chr2L:3345776-3345896 3.6e-05 32_[+2]_80 chr3R:10498723-10498843 3.6e-05 109_[+2]_3 chrX:21028218-21028338 3.6e-05 28_[+2]_84 chr2R:13474945-13475065 3.6e-05 15_[+2]_97 chr2L:5987035-5987155 3.6e-05 97_[+2]_15 chr3L:8683903-8684023 4.3e-05 8_[+2]_104 chr3R:15983672-15983792 7.3e-05 37_[+2]_75 chr2L:17583079-17583199 7.3e-05 15_[+2]_97 chr2R:13924325-13924445 7.3e-05 12_[+2]_100 chr2L:1911404-1911524 7.3e-05 39_[+2]_73 chr3R:14386287-14386407 7.3e-05 28_[+2]_84 chr3L:19056875-19056995 7.3e-05 39_[+2]_73 chr3L:4400005-4400125 7.3e-05 23_[+2]_89 chr3L:14354653-14354773 8.4e-05 110_[+2]_2 chr2R:10303678-10303798 0.00012 90_[+2]_22 chr3L:3819133-3819253 0.00012 44_[+2]_68 chr3R:27138139-27138259 0.00014 32_[+2]_80 chr3R:25888802-25888922 0.00014 56_[+2]_56 chr2L:20890056-20890176 0.00014 65_[+2]_47 chr3R:7103360-7103480 0.00014 90_[+2]_22 chrX:13645173-13645293 0.00014 31_[+2]_81 chr2L:9137045-9137165 0.00014 49_[+2]_63 chr2L:7134222-7134342 0.00014 95_[+2]_17 chr3R:19114004-19114124 0.00015 83_[+2]_29 chr3L:8705455-8705575 0.00015 7_[+2]_105 chr2R:23180957-23181077 0.00017 111_[+2]_1 chr3L:7961381-7961501 0.00017 100_[+2]_12 chrX:12923388-12923508 0.00019 112_[+2] chr2R:6960478-6960598 0.00019 9_[+2]_103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCMSKGM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCMSKGM width=8 seqs=35 chr2R:6532649-6532769 ( 89) TGCCCGGC 1 chr3L:14194227-14194347 ( 10) TGCACTGC 1 chr2R:15134308-15134428 ( 92) TGCACTGC 1 chr3L:16429572-16429692 ( 28) TGCCCGGC 1 chr2R:10813398-10813518 ( 95) TGCACTGC 1 chr3R:6665453-6665573 ( 89) TGCAGGGC 1 chr2L:3345776-3345896 ( 33) TGCAGGGC 1 chr3R:10498723-10498843 ( 110) TGCAGTGC 1 chrX:21028218-21028338 ( 29) TGCAGGGC 1 chr2R:13474945-13475065 ( 16) TGCAGGGC 1 chr2L:5987035-5987155 ( 98) TGCCGGGC 1 chr3L:8683903-8684023 ( 9) TGCACCGC 1 chr3R:15983672-15983792 ( 38) TGCCCTGA 1 chr2L:17583079-17583199 ( 16) TGCACTGA 1 chr2R:13924325-13924445 ( 13) TGCACTGA 1 chr2L:1911404-1911524 ( 40) TGCACTGA 1 chr3R:14386287-14386407 ( 29) TGCCCTGA 1 chr3L:19056875-19056995 ( 40) TGCACTGA 1 chr3L:4400005-4400125 ( 24) TGCACGGA 1 chr3L:14354653-14354773 ( 111) TGCACAGC 1 chr2R:10303678-10303798 ( 91) TGCCGTGA 1 chr3L:3819133-3819253 ( 45) TGCCGGGA 1 chr3R:27138139-27138259 ( 33) TGCAGAGC 1 chr3R:25888802-25888922 ( 57) TGCCGAGC 1 chr2L:20890056-20890176 ( 66) TGCACCGA 1 chr3R:7103360-7103480 ( 91) TGCACCGA 1 chrX:13645173-13645293 ( 32) TGCAGAGC 1 chr2L:9137045-9137165 ( 50) TGCCCCGA 1 chr2L:7134222-7134342 ( 96) TGCACCGA 1 chr3R:19114004-19114124 ( 84) CGCACTGC 1 chr3L:8705455-8705575 ( 8) CGCCCTGC 1 chr2R:23180957-23181077 ( 112) TGCCCAGA 1 chr3L:7961381-7961501 ( 101) TGCCCAGA 1 chrX:12923388-12923508 ( 113) CGCAGTGC 1 chr2R:6960478-6960598 ( 10) CGCCGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCMSKGM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4349 E= 2.8e+003 -1177 -70 -1177 150 -1177 -1177 241 -1177 -1177 243 -1177 -1177 101 100 -1177 -1177 -1177 176 99 -1177 -87 -38 46 45 -1177 -1177 241 -1177 45 162 -1177 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCMSKGM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 2.8e+003 0.000000 0.114286 0.000000 0.885714 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.628571 0.371429 0.000000 0.000000 0.000000 0.628571 0.371429 0.000000 0.171429 0.142857 0.257143 0.428571 0.000000 0.000000 1.000000 0.000000 0.428571 0.571429 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCMSKGM MEME-2 regular expression -------------------------------------------------------------------------------- TGC[AC][CG][TG]G[CA] -------------------------------------------------------------------------------- Time 13.85 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCYGCCC MEME-3 width = 8 sites = 2 llr = 25 E-value = 3.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCYGCCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:a5:aaa probability G :a::a::: matrix T :::5:::: bits 2.4 *** **** 2.2 *** **** 1.9 *** **** 1.7 *** **** Relative 1.5 *** **** Entropy 1.2 *** **** (18.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCCGCCC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCYGCCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6532649-6532769 31 1.46e-06 CCCCGACATC CGCCGCCC TGTCATATTT chr2L:16299544-16299664 104 3.93e-06 ctctctctct cgctgccc ctctctctc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCYGCCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6532649-6532769 1.5e-06 30_[+3]_82 chr2L:16299544-16299664 3.9e-06 103_[+3]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCYGCCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCYGCCC width=8 seqs=2 chr2R:6532649-6532769 ( 31) CGCCGCCC 1 chr2L:16299544-16299664 ( 104) CGCTGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCYGCCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 3.9e+004 -765 242 -765 -765 -765 -765 241 -765 -765 242 -765 -765 -765 142 -765 67 -765 -765 241 -765 -765 242 -765 -765 -765 242 -765 -765 -765 242 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCYGCCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.9e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCYGCCC MEME-3 regular expression -------------------------------------------------------------------------------- CGC[CT]GCCC -------------------------------------------------------------------------------- Time 20.06 secs. ******************************************************************************** ******************************************************************************** MOTIF CCACCCGC MEME-4 width = 8 sites = 2 llr = 26 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACCCGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C aa:aaa:a probability G ::::::a: matrix T :::::::: bits 2.4 ** ***** 2.2 ** ***** 1.9 ** ***** 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (18.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCACCCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:14354653-14354773 15 2.44e-06 ATTTTCTTTG CCACCCGC CGTCACTCGT chr2R:23659697-23659817 42 2.44e-06 ACACGTTGCA CCACCCGC TGACCACCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14354653-14354773 2.4e-06 14_[+4]_98 chr2R:23659697-23659817 2.4e-06 41_[+4]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACCCGC width=8 seqs=2 chr3L:14354653-14354773 ( 15) CCACCCGC 1 chr2R:23659697-23659817 ( 42) CCACCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.5e+004 -765 242 -765 -765 -765 242 -765 -765 167 -765 -765 -765 -765 242 -765 -765 -765 242 -765 -765 -765 242 -765 -765 -765 -765 241 -765 -765 242 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.5e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCCGC MEME-4 regular expression -------------------------------------------------------------------------------- CCACCCGC -------------------------------------------------------------------------------- Time 26.27 secs. ******************************************************************************** ******************************************************************************** MOTIF CSCCCCYC MEME-5 width = 8 sites = 2 llr = 24 E-value = 8.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSCCCCYC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a5aaaa5a probability G :5:::::: matrix T ::::::5: bits 2.4 * **** * 2.2 * **** * 1.9 * **** * 1.7 * **** * Relative 1.5 ****** * Entropy 1.2 ****** * (17.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCCCCCC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCCCYC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6532649-6532769 98 2.88e-06 GTGCCCGGCT CGCCCCCC TTTCGATGTG chr2L:1094886-1095006 7 7.74e-06 CCTCCT CCCCCCTC CTCCCACCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCCCYC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6532649-6532769 2.9e-06 97_[+5]_15 chr2L:1094886-1095006 7.7e-06 6_[+5]_106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCCCYC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSCCCCYC width=8 seqs=2 chr2R:6532649-6532769 ( 98) CGCCCCCC 1 chr2L:1094886-1095006 ( 7) CCCCCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCCCYC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 8.8e+004 -765 242 -765 -765 -765 142 141 -765 -765 242 -765 -765 -765 242 -765 -765 -765 242 -765 -765 -765 242 -765 -765 -765 142 -765 67 -765 242 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCCCYC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 8.8e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCCCCYC MEME-5 regular expression -------------------------------------------------------------------------------- C[CG]CCCC[CT]C -------------------------------------------------------------------------------- Time 32.46 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:347744-347864 4.17e-01 120 chr3R:16309486-16309606 7.59e-01 120 chr2L:16299544-16299664 7.26e-05 103_[+3(3.93e-06)]_9 chr3L:11046790-11046910 2.09e-04 57_[+5(2.88e-06)]_55 chr3L:3819133-3819253 5.76e-02 120 chrX:16421888-16422008 2.89e-02 120 chr2R:15359772-15359892 3.34e-01 120 chr3L:8527595-8527715 8.90e-01 120 chr3L:639692-639812 1.66e-03 45_[+1(8.01e-06)]_67 chr3R:11968337-11968457 3.65e-01 120 chr3L:8705455-8705575 8.27e-03 120 chr2L:5987035-5987155 2.88e-03 97_[+2(3.60e-05)]_15 chr3R:16274556-16274676 3.65e-01 120 chr2L:6724104-6724224 3.00e-03 46_[+3(5.26e-05)]_66 chr3R:30252458-30252578 6.12e-01 120 chr2L:18968060-18968180 1.64e-03 4_[+5(2.03e-05)]_108 chr3L:8527809-8527929 2.13e-01 120 chr3R:8250286-8250406 4.21e-02 120 chr2R:16155994-16156114 4.36e-02 120 chr2R:11592259-11592379 2.29e-01 120 chr3R:8362479-8362599 1.83e-01 120 chr2R:10673098-10673218 8.50e-03 83_[+1(3.46e-05)]_29 chr2L:7134222-7134342 1.31e-01 120 chr2R:10813398-10813518 1.76e-01 94_[+2(1.79e-05)]_18 chr2R:23601831-23601951 6.07e-01 120 chr3R:20714547-20714667 2.31e-01 120 chr3R:18243082-18243202 1.91e-01 120 chr2L:11207596-11207716 7.28e-02 120 chr2R:6719820-6719940 7.79e-01 120 chr2L:13666633-13666753 5.46e-01 120 chr2L:1646686-1646806 7.78e-01 120 chr2L:3770187-3770307 2.51e-02 77_[+1(2.30e-05)]_35 chr2L:8290201-8290321 5.96e-01 120 chr2R:6960478-6960598 4.05e-03 120 chr3L:639892-640012 2.52e-01 120 chr2L:9137045-9137165 3.44e-02 120 chrX:16253339-16253459 3.06e-02 9_[+4(8.24e-05)]_103 chr2L:19370220-19370340 1.76e-02 37_[+1(4.03e-06)]_75 chr2R:16846057-16846177 7.52e-01 120 chr2R:6676190-6676310 6.04e-01 120 chrX:3152157-3152277 9.83e-01 120 chr3L:19018571-19018691 5.93e-02 104_[+1(2.30e-05)]_8 chr2L:8080814-8080934 5.68e-01 120 chr3L:4400005-4400125 1.85e-01 23_[+2(7.27e-05)]_89 chr3L:14172706-14172826 2.69e-01 120 chrX:3073730-3073850 9.99e-01 120 chr3R:30252665-30252785 8.35e-01 120 chrX:3024668-3024788 1.47e-02 120 chr3R:21347938-21348058 2.49e-01 78_[+1(3.88e-05)]_34 chr2L:107842-107962 1.47e-01 120 chr2R:16847054-16847174 9.88e-01 120 chrX:9644948-9645068 8.34e-02 120 chr3R:19182940-19183060 6.86e-01 120 chr3L:19056875-19056995 4.13e-02 39_[+2(7.27e-05)]_73 chr2R:17077983-17078103 3.41e-01 120 chr2R:13474945-13475065 1.97e-02 15_[+2(3.60e-05)]_97 chr2L:4031954-4032074 9.37e-01 120 chr3R:20277008-20277128 7.77e-01 120 chr3R:18785892-18786012 8.96e-01 120 chr3L:11491967-11492087 2.96e-02 28_[+4(8.24e-05)]_84 chr3L:9333843-9333963 1.13e-01 120 chr3L:754718-754838 9.98e-01 120 chr2R:23659697-23659817 1.73e-05 41_[+4(2.44e-06)]_71 chr3L:17937471-17937591 4.85e-03 45_[+1(4.03e-06)]_67 chr2L:18496952-18497072 2.03e-01 16_[+1(4.30e-05)]_96 chr2R:24897736-24897856 9.50e-01 120 chr3R:12701406-12701526 7.10e-03 120 chr2L:3624979-3625099 6.43e-02 120 chr3L:10428189-10428309 1.00e+00 120 chr2R:20195223-20195343 1.00e+00 120 chr2L:470042-470162 2.89e-02 120 chr2L:16299744-16299864 9.91e-01 120 chrX:22509189-22509309 5.55e-01 120 chrX:21028218-21028338 3.67e-03 28_[+2(3.60e-05)]_84 chr3L:9101802-9101922 7.11e-02 120 chr3R:13893035-13893155 5.45e-01 120 chrX:7227451-7227571 6.69e-02 120 chr3R:29087607-29087727 3.77e-01 120 chr3R:6229213-6229333 1.00e+00 120 chr2R:13993281-13993401 3.16e-01 120 chr3L:22728210-22728330 3.68e-01 120 chr3R:14744467-14744587 9.74e-01 120 chr3L:3380588-3380708 9.76e-01 120 chrX:12923388-12923508 3.38e-01 120 chr3R:22573718-22573838 3.18e-01 120 chr2R:19860349-19860469 9.89e-01 120 chr3R:28857428-28857548 4.79e-01 120 chr3R:10498723-10498843 5.10e-02 109_[+2(3.60e-05)]_3 chr2R:7477345-7477465 9.79e-01 120 chr3L:3059438-3059558 3.75e-01 120 chr2R:12729325-12729445 2.73e-02 99_[+1(1.62e-05)]_13 chr3R:30865568-30865688 1.00e+00 120 chr3L:8925817-8925937 1.00e+00 120 chr2R:13305658-13305778 7.94e-01 120 chr3R:17828806-17828926 9.93e-01 120 chrX:18238042-18238162 2.86e-01 120 chr2R:7952836-7952956 8.59e-01 120 chr2R:10212480-10212600 9.99e-01 120 chr2L:7525401-7525521 7.13e-01 120 chr3L:21259403-21259523 4.92e-03 78_[+1(2.45e-05)]_34 chr3R:5103761-5103881 8.96e-01 120 chr2L:20944420-20944540 9.96e-01 120 chr2R:11803419-11803539 9.80e-01 120 chr2R:21251546-21251666 8.09e-01 120 chr3R:16907948-16908068 9.96e-01 120 chr2R:14971304-14971424 5.93e-02 120 chr2L:2749274-2749394 1.59e-02 120 chr2L:14537595-14537715 8.05e-01 120 chr3L:8683903-8684023 9.66e-03 8_[+2(4.26e-05)]_104 chr2R:14485461-14485581 7.87e-01 120 chr3L:17047875-17047995 2.54e-01 31_[+1(6.11e-05)]_81 chr3L:19073321-19073441 2.16e-02 120 chr3L:14354653-14354773 1.92e-05 14_[+4(2.44e-06)]_88_[+2(8.39e-05)]_\ 2 chr3R:21598082-21598202 4.25e-01 120 chr3R:27946741-27946861 5.46e-01 120 chr3L:10858591-10858711 4.56e-01 120 chr3R:14598113-14598233 1.00e+00 120 chrX:5745198-5745318 3.99e-01 120 chr3L:22910035-22910155 8.18e-01 120 chrX:17782086-17782206 3.82e-03 81_[+4(8.24e-05)]_31 chr3L:7859829-7859949 3.22e-01 120 chr3R:21263278-21263398 1.19e-01 120 chr2L:3345776-3345896 1.34e-01 32_[+2(3.60e-05)]_80 chr2L:3851450-3851570 1.00e+00 120 chr3R:28586951-28587071 2.10e-01 120 chr3L:1169784-1169904 2.06e-01 120 chr3L:16429572-16429692 8.08e-02 27_[+2(1.79e-05)]_85 chr2L:3856425-3856545 9.21e-01 120 chr2R:15134308-15134428 1.99e-02 91_[+2(1.79e-05)]_21 chr3L:3873174-3873294 1.00e+00 120 chr2L:14245593-14245713 4.54e-01 120 chr3R:25885239-25885359 5.13e-01 120 chrX:14634817-14634937 1.00e+00 120 chrX:17298084-17298204 8.45e-01 120 chr4:1199278-1199398 9.95e-01 120 chr3R:29083938-29084058 4.53e-02 103_[+1(3.21e-05)]_9 chr2R:21527430-21527550 2.74e-01 120 chrX:14622342-14622462 8.06e-01 120 chr3L:10391115-10391235 1.00e+00 120 chr3L:10350854-10350974 4.58e-01 120 chr2L:20464491-20464611 7.42e-01 120 chr2L:12498632-12498752 4.24e-03 80_[+1(4.30e-05)]_32 chr3L:3978088-3978208 1.00e+00 120 chr2R:13570030-13570150 3.58e-01 120 chr2L:20327552-20327672 1.35e-03 120 chrX:4581882-4582002 1.00e+00 120 chrX:18101193-18101313 2.48e-01 120 chr3L:14194227-14194347 1.24e-02 9_[+2(1.79e-05)]_103 chr3R:21865184-21865304 9.52e-01 120 chr3R:28852035-28852155 9.99e-04 29_[+1(5.52e-06)]_83 chr2L:6818487-6818607 7.70e-01 120 chr2R:14217003-14217123 5.58e-01 120 chr2R:6532649-6532769 3.04e-08 30_[+3(1.46e-06)]_50_[+2(1.79e-05)]_\ 1_[+5(2.88e-06)]_15 chr3L:8058412-8058532 1.50e-01 120 chrX:4609791-4609911 6.62e-01 120 chr3R:14386287-14386407 4.38e-01 28_[+2(7.27e-05)]_84 chr3R:31549202-31549322 9.74e-01 120 chr2R:12644254-12644374 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chr2R:6610306-6610426 2.35e-01 120 chr3L:14190342-14190462 9.78e-01 120 chr3R:4846919-4847039 9.14e-01 120 chr2R:22387673-22387793 9.93e-01 120 chr3R:25888802-25888922 3.52e-01 120 chrX:19371625-19371745 9.04e-01 120 chr3R:20542398-20542518 5.35e-01 120 chr3R:10567021-10567141 2.48e-02 80_[+1(2.70e-05)]_32 chr3R:23300709-23300829 1.00e+00 120 chrX:5639255-5639375 3.33e-01 120 chr2L:16523211-16523331 1.62e-03 97_[+1(5.26e-05)]_15 chrX:3397050-3397170 7.99e-01 120 chr3R:27138139-27138259 1.59e-01 120 chr2L:3647750-3647870 7.46e-04 43_[+5(2.85e-05)]_69 chr2R:9681821-9681941 8.37e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n05.farnam.hpc.yale.internal ********************************************************************************