******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG15269.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:15105675-15105795 1.0000 120 chr3R:23438353-23438473 1.0000 120 chr2R:20633554-20633674 1.0000 120 chr3L:1674470-1674590 1.0000 120 chr2R:20581708-20581828 1.0000 120 chr3L:6779580-6779700 1.0000 120 chr3R:10125752-10125872 1.0000 120 chr2R:7896324-7896444 1.0000 120 chr3L:17055664-17055784 1.0000 120 chrX:9987826-9987946 1.0000 120 chr2L:11964055-11964175 1.0000 120 chr3R:19569000-19569120 1.0000 120 chr3R:22432253-22432373 1.0000 120 chr3R:5392734-5392854 1.0000 120 chr3R:25437428-25437548 1.0000 120 chr3L:18989751-18989871 1.0000 120 chr2L:14271563-14271683 1.0000 120 chr2L:15106273-15106393 1.0000 120 chr2L:171703-171823 1.0000 120 chr3R:23460876-23460996 1.0000 120 chr2L:17741665-17741785 1.0000 120 chr3L:16840641-16840761 1.0000 120 chr3L:8374283-8374403 1.0000 120 chr2L:2173753-2173873 1.0000 120 chr3L:2582045-2582165 1.0000 120 chr2R:16848205-16848325 1.0000 120 chr3L:1258761-1258881 1.0000 120 chr2R:15245064-15245184 1.0000 120 chr2R:20082939-20083059 1.0000 120 chr3L:7811083-7811203 1.0000 120 chr3R:4966554-4966674 1.0000 120 chrX:9202462-9202582 1.0000 120 chr3L:22408361-22408481 1.0000 120 chr3R:22666588-22666708 1.0000 120 chr2R:13165017-13165137 1.0000 120 chr3L:4461771-4461891 1.0000 120 chr3R:10274965-10275085 1.0000 120 chrX:6029348-6029468 1.0000 120 chr3L:8288569-8288689 1.0000 120 chr3R:17007474-17007594 1.0000 120 chrX:11515658-11515778 1.0000 120 chr3L:16289221-16289341 1.0000 120 chrX:6542455-6542575 1.0000 120 chrX:3109040-3109160 1.0000 120 chr3L:9341016-9341136 1.0000 120 chr3L:783127-783247 1.0000 120 chrX:9350437-9350557 1.0000 120 chr3L:1818970-1819090 1.0000 120 chr3R:23526208-23526328 1.0000 120 chr3L:3772719-3772839 1.0000 120 chr3L:332126-332246 1.0000 120 chr2R:11939434-11939554 1.0000 120 chr3R:19902469-19902589 1.0000 120 chr2L:7492647-7492767 1.0000 120 chr3R:20003201-20003321 1.0000 120 chrX:11848693-11848813 1.0000 120 chr3L:639045-639165 1.0000 120 chr2L:9522821-9522941 1.0000 120 chr3R:17611968-17612088 1.0000 120 chr2L:15909839-15909959 1.0000 120 chr2L:12010820-12010940 1.0000 120 chr3R:23210379-23210499 1.0000 120 chrX:11885487-11885607 1.0000 120 chr3L:4747239-4747359 1.0000 120 chr2R:13996747-13996867 1.0000 120 chr2L:14365720-14365840 1.0000 120 chr3L:10523026-10523146 1.0000 120 chrX:8206079-8206199 1.0000 120 chr3R:9702115-9702235 1.0000 120 chr2L:19415924-19416044 1.0000 120 chrX:13109858-13109978 1.0000 120 chr2R:13261850-13261970 1.0000 120 chr3L:4509080-4509200 1.0000 120 chrX:17482960-17483080 1.0000 120 chr2R:18374581-18374701 1.0000 120 chr3R:12451489-12451609 1.0000 120 chr3L:4852791-4852911 1.0000 120 chr3L:7086826-7086946 1.0000 120 chr3R:12562168-12562288 1.0000 120 chrX:13817595-13817715 1.0000 120 chr3L:11393937-11394057 1.0000 120 chr3L:16825267-16825387 1.0000 120 chr3R:5290647-5290767 1.0000 120 chr3R:24093641-24093761 1.0000 120 chr3L:9695829-9695949 1.0000 120 chr2L:5259615-5259735 1.0000 120 chr3R:14095534-14095654 1.0000 120 chr2R:9742935-9743055 1.0000 120 chrX:11391669-11391789 1.0000 120 chr2R:22789394-22789514 1.0000 120 chrX:11441128-11441248 1.0000 120 chr2L:2467846-2467966 1.0000 120 chrX:5989526-5989646 1.0000 120 chr2R:8759590-8759710 1.0000 120 chr2L:13156453-13156573 1.0000 120 chr3R:24906102-24906222 1.0000 120 chr3L:16697211-16697331 1.0000 120 chr3L:13478703-13478823 1.0000 120 chr3R:12083710-12083830 1.0000 120 chr2L:7443071-7443191 1.0000 120 chr2R:16581778-16581898 1.0000 120 chrX:20797638-20797758 1.0000 120 chrX:14593220-14593340 1.0000 120 chr2R:15155076-15155196 1.0000 120 chr3R:10154415-10154535 1.0000 120 chr2R:16924388-16924508 1.0000 120 chr3R:12543081-12543201 1.0000 120 chrX:10233266-10233386 1.0000 120 chr3R:11663662-11663782 1.0000 120 chr3R:20836339-20836459 1.0000 120 chr3R:9888798-9888918 1.0000 120 chrX:18094860-18094980 1.0000 120 chr3R:22542922-22543042 1.0000 120 chrX:9520363-9520483 1.0000 120 chr3L:9424598-9424718 1.0000 120 chr3L:22276752-22276872 1.0000 120 chr3R:24626344-24626464 1.0000 120 chr2R:9903462-9903582 1.0000 120 chr2L:2872676-2872796 1.0000 120 chr3L:3134292-3134412 1.0000 120 chr3R:15119853-15119973 1.0000 120 chr2L:7150893-7151013 1.0000 120 chr2L:16315042-16315162 1.0000 120 chr3L:4603577-4603697 1.0000 120 chrX:966978-967098 1.0000 120 chr3L:13903420-13903540 1.0000 120 chr2L:20808336-20808456 1.0000 120 chr2L:9779218-9779338 1.0000 120 chr2L:14497971-14498091 1.0000 120 chr3R:26030629-26030749 1.0000 120 chr2R:23057804-23057924 1.0000 120 chr3R:19152002-19152122 1.0000 120 chrX:19964334-19964454 1.0000 120 chr3R:18438898-18439018 1.0000 120 chr3L:3544408-3544528 1.0000 120 chr3R:23969560-23969680 1.0000 120 chr2R:10439069-10439189 1.0000 120 chr3R:21613065-21613185 1.0000 120 chr3L:19092229-19092349 1.0000 120 chrX:12073751-12073871 1.0000 120 chr3R:28677026-28677146 1.0000 120 chrX:14634838-14634958 1.0000 120 chr3R:26333449-26333569 1.0000 120 chrX:9431553-9431673 1.0000 120 chr3L:4000869-4000989 1.0000 120 chrX:17176621-17176741 1.0000 120 chr2R:10079878-10079998 1.0000 120 chr2R:8734640-8734760 1.0000 120 chrX:14840654-14840774 1.0000 120 chr2R:13935284-13935404 1.0000 120 chrX:18837165-18837285 1.0000 120 chr2R:10265418-10265538 1.0000 120 chr3L:11450676-11450796 1.0000 120 chrX:19306687-19306807 1.0000 120 chr3R:11661877-11661997 1.0000 120 chr3L:15923500-15923620 1.0000 120 chr2L:8982732-8982852 1.0000 120 chr3L:5365278-5365398 1.0000 120 chrX:17696807-17696927 1.0000 120 chr2L:1207568-1207688 1.0000 120 chr2L:16869099-16869219 1.0000 120 chr3R:4311242-4311362 1.0000 120 chr3R:9430464-9430584 1.0000 120 chr2R:12951417-12951537 1.0000 120 chr2R:12218929-12219049 1.0000 120 chr3R:10688952-10689072 1.0000 120 chrX:13764516-13764636 1.0000 120 chrX:3019705-3019825 1.0000 120 chr3L:16146663-16146783 1.0000 120 chr2L:7492075-7492195 1.0000 120 chr3R:9344933-9345053 1.0000 120 chr3L:3382002-3382122 1.0000 120 chrX:11379275-11379395 1.0000 120 chr3R:26494381-26494501 1.0000 120 chrX:6067549-6067669 1.0000 120 chr2R:12547646-12547766 1.0000 120 chr3L:1151793-1151913 1.0000 120 chr2L:18517410-18517530 1.0000 120 chr3L:10786023-10786143 1.0000 120 chr2L:7149081-7149201 1.0000 120 chr3L:17616959-17617079 1.0000 120 chr2R:7879175-7879295 1.0000 120 chr3L:16054285-16054405 1.0000 120 chrX:5095750-5095870 1.0000 120 chr2R:18435211-18435331 1.0000 120 chr3L:5819444-5819564 1.0000 120 chr2L:7434924-7435044 1.0000 120 chr3L:5554509-5554629 1.0000 120 chr3R:21163369-21163489 1.0000 120 chrX:17330424-17330544 1.0000 120 chr3L:11351349-11351469 1.0000 120 chr3R:16368436-16368556 1.0000 120 chr3L:18782185-18782305 1.0000 120 chrX:11081344-11081464 1.0000 120 chr3L:21056010-21056130 1.0000 120 chr3L:18114089-18114209 1.0000 120 chr2R:15846389-15846509 1.0000 120 chr2R:16849532-16849652 1.0000 120 chr3L:6157741-6157861 1.0000 120 chr3R:20950136-20950256 1.0000 120 chr2L:9564636-9564756 1.0000 120 chr2L:14011759-14011879 1.0000 120 chr2L:13512252-13512372 1.0000 120 chr3L:9691308-9691428 1.0000 120 chrX:3714167-3714287 1.0000 120 chr3L:10337735-10337855 1.0000 120 chr3R:30134796-30134916 1.0000 120 chr2R:10854275-10854395 1.0000 120 chr3L:2845350-2845470 1.0000 120 chr3R:13446645-13446765 1.0000 120 chr2L:11199204-11199324 1.0000 120 chr3R:26892874-26892994 1.0000 120 chr3R:15091900-15092020 1.0000 120 chrX:3455572-3455692 1.0000 120 chr3L:16149898-16150018 1.0000 120 chr2R:6220000-6220120 1.0000 120 chrX:10573675-10573795 1.0000 120 chr2L:7494397-7494517 1.0000 120 chr3L:21859767-21859887 1.0000 120 chr3R:28904289-28904409 1.0000 120 chr3R:22121365-22121485 1.0000 120 chr3L:13356191-13356311 1.0000 120 chr3R:22536584-22536704 1.0000 120 chr3R:12443311-12443431 1.0000 120 chr2R:15134276-15134396 1.0000 120 chrX:12547781-12547901 1.0000 120 chr3R:26888481-26888601 1.0000 120 chr3R:22108427-22108547 1.0000 120 chr2L:14141371-14141491 1.0000 120 chr2R:15754400-15754520 1.0000 120 chr3R:8854822-8854942 1.0000 120 chr2R:7054358-7054478 1.0000 120 chrX:12937926-12938046 1.0000 120 chr3L:3814647-3814767 1.0000 120 chr2L:3781535-3781655 1.0000 120 chrX:19166383-19166503 1.0000 120 chr2R:7987843-7987963 1.0000 120 chrX:2591770-2591890 1.0000 120 chr3R:17526170-17526290 1.0000 120 chr2L:18967009-18967129 1.0000 120 chrX:16854848-16854968 1.0000 120 chrX:947611-947731 1.0000 120 chr3L:3786920-3787040 1.0000 120 chr2L:1837843-1837963 1.0000 120 chr2L:10677504-10677624 1.0000 120 chr2L:7992103-7992223 1.0000 120 chr3L:3437321-3437441 1.0000 120 chr3L:6817091-6817211 1.0000 120 chr3L:10893569-10893689 1.0000 120 chr2R:21709635-21709755 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG15269/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG15269.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.347 C 0.162 G 0.159 T 0.333 Background letter frequencies (from file dataset with add-one prior applied): A 0.347 C 0.162 G 0.159 T 0.333 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGCMARSR MEME-1 width = 8 sites = 38 llr = 323 E-value = 4.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCMARSR MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::466:4 pos.-specific C ::a63132 probability G aa::2363 matrix T :::::::1 bits 2.7 *** 2.4 *** 2.1 *** 1.9 *** Relative 1.6 *** * Entropy 1.3 **** * (12.3 bits) 1.1 **** * 0.8 **** ** 0.5 ******* 0.3 ******** 0.0 -------- Multilevel GGCCAAGA consensus ACGCG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCMARSR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2173753-2173873 105 1.36e-06 GACGGGTGTA GGCCAGGG CGACAGAG chr3L:17055664-17055784 103 1.14e-05 AGTTTAAAAT GGCCAGGC CAAAATGCCA chr3L:11393937-11394057 23 1.44e-05 GTTTGTGTTT GGCCAACG CACCCAATTT chr3R:22666588-22666708 55 1.44e-05 GACCATTaac ggccaacg caaacgccaa chrX:2591770-2591890 102 2.39e-05 CTGGGATCGT GGCCAAGA GCGTAGTGGC chr3L:21056010-21056130 11 2.39e-05 GCAGAGACTC GGCCCAGA CGAGTATGGC chr2R:16924388-16924508 85 2.39e-05 ATCAATTAGC GGCCAAGA GCGTCATCGG chr3L:783127-783247 27 2.39e-05 AAACCAAACT GGCcaaga aacagaaaca chr2R:13165017-13165137 21 2.39e-05 CGTTTCTCTC GGCCAAGA AACACTTAAC chr3L:18989751-18989871 103 2.39e-05 CCGTGTTTCG GGCCCAGC ATTTTCATGG chr3R:10125752-10125872 46 2.39e-05 GCATTGAAAT GGCCAAGA GTGGCCGTAA chr2L:14365720-14365840 111 2.71e-05 CAGCTTAATC GGCCGGGC TT chrX:19306687-19306807 58 3.54e-05 CGACCCATCA GGCAAGGG GTATGATGAT chrX:14593220-14593340 60 3.54e-05 AATGATTATG GGCCAGCA GTGCGTATAC chr3R:19902469-19902589 11 3.54e-05 GATTGGAAAC GGCAAGGG GGGTGGCCTC chr3L:1258761-1258881 12 3.54e-05 ACAACTTGTT GGCCAGCA ATAAATGGTT chr3L:22408361-22408481 102 5.43e-05 TATCTGAGGC GGCCAACA GCGCTGTAAT chr3L:8374283-8374403 4 5.43e-05 ACA GGCAAAGG TCGTCACAGC chr2R:20581708-20581828 41 5.43e-05 TCCACAAGCG GGCCAACA TTTTATTTGT chr2L:18517410-18517530 61 5.90e-05 TTTTAAGCCC GGCCACCG GGACTGGCAG chr3L:13356191-13356311 30 7.19e-05 CTTTGTTACG GGCCAAGT GCTAGAATAC chr2L:5259615-5259735 100 7.19e-05 CAAAATACGT GGCCAAGT GGAATGGAGC chr3R:26030629-26030749 53 8.92e-05 TACGATTACA GGCACGGA TACACGGAAA chrX:9987826-9987946 27 8.92e-05 AATAAAAACT GGCAGAGG AAATTAGGCA chr3L:6779580-6779700 108 8.92e-05 GAGACAGGTT GGCAAGGC ATCCC chr2L:16315042-16315162 84 9.66e-05 CCAGTTGGGC GGCAAACG AGCGGCTCGA chr3L:3134292-3134412 45 9.66e-05 CACAAGCAGA GGCACACG ATAGAGAAAA chr2L:11964055-11964175 53 9.66e-05 CGTGTTGGCT GGCACACG ATCTTCACAA chr3R:23526208-23526328 49 1.20e-04 CGGACTATAA GGCACAGC CATGGCATCG chr3R:4966554-4966674 95 1.24e-04 TAGTCGCTCT GGCCGCGA ATGTGTGTCA chr3R:8854822-8854942 36 1.38e-04 GTCTCCAAAG GGCACCGG CTATCGTTTA chr3L:11351349-11351469 61 1.38e-04 ATGTCTATGT GGCCCACT GAAGATCGCG chr3L:11450676-11450796 103 1.38e-04 CGTCGGTTTT GGCCCACT GTCAATCCTT chr3L:1818970-1819090 45 1.41e-04 TGACACTGCC GGCAGGGC GTCCATTGTT chr3L:1674470-1674590 102 1.41e-04 TTTCCATTGT GGCaggga gcgcggaaga chr2R:11939434-11939554 59 1.94e-04 AGGCAGGTAA GGCCGCCA GGTAAGCTCG chr2L:7434924-7435044 84 2.23e-04 GTAGTCATAG GGCAAAGT CTTCACTTCT chr3L:4747239-4747359 5 2.76e-04 GGGG GGCCCGAG CGGAGGAGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCMARSR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2173753-2173873 1.4e-06 104_[+1]_8 chr3L:17055664-17055784 1.1e-05 102_[+1]_10 chr3L:11393937-11394057 1.4e-05 22_[+1]_90 chr3R:22666588-22666708 1.4e-05 54_[+1]_58 chrX:2591770-2591890 2.4e-05 101_[+1]_11 chr3L:21056010-21056130 2.4e-05 10_[+1]_102 chr2R:16924388-16924508 2.4e-05 84_[+1]_28 chr3L:783127-783247 2.4e-05 26_[+1]_86 chr2R:13165017-13165137 2.4e-05 20_[+1]_92 chr3L:18989751-18989871 2.4e-05 102_[+1]_10 chr3R:10125752-10125872 2.4e-05 45_[+1]_67 chr2L:14365720-14365840 2.7e-05 110_[+1]_2 chrX:19306687-19306807 3.5e-05 57_[+1]_55 chrX:14593220-14593340 3.5e-05 59_[+1]_53 chr3R:19902469-19902589 3.5e-05 10_[+1]_102 chr3L:1258761-1258881 3.5e-05 11_[+1]_101 chr3L:22408361-22408481 5.4e-05 101_[+1]_11 chr3L:8374283-8374403 5.4e-05 3_[+1]_109 chr2R:20581708-20581828 5.4e-05 40_[+1]_72 chr2L:18517410-18517530 5.9e-05 60_[+1]_52 chr3L:13356191-13356311 7.2e-05 29_[+1]_83 chr2L:5259615-5259735 7.2e-05 99_[+1]_13 chr3R:26030629-26030749 8.9e-05 52_[+1]_60 chrX:9987826-9987946 8.9e-05 26_[+1]_86 chr3L:6779580-6779700 8.9e-05 107_[+1]_5 chr2L:16315042-16315162 9.7e-05 83_[+1]_29 chr3L:3134292-3134412 9.7e-05 44_[+1]_68 chr2L:11964055-11964175 9.7e-05 52_[+1]_60 chr3R:23526208-23526328 0.00012 48_[+1]_64 chr3R:4966554-4966674 0.00012 94_[+1]_18 chr3R:8854822-8854942 0.00014 35_[+1]_77 chr3L:11351349-11351469 0.00014 60_[+1]_52 chr3L:11450676-11450796 0.00014 102_[+1]_10 chr3L:1818970-1819090 0.00014 44_[+1]_68 chr3L:1674470-1674590 0.00014 101_[+1]_11 chr2R:11939434-11939554 0.00019 58_[+1]_54 chr2L:7434924-7435044 0.00022 83_[+1]_29 chr3L:4747239-4747359 0.00028 4_[+1]_108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCMARSR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCMARSR width=8 seqs=38 chr2L:2173753-2173873 ( 105) GGCCAGGG 1 chr3L:17055664-17055784 ( 103) GGCCAGGC 1 chr3L:11393937-11394057 ( 23) GGCCAACG 1 chr3R:22666588-22666708 ( 55) GGCCAACG 1 chrX:2591770-2591890 ( 102) GGCCAAGA 1 chr3L:21056010-21056130 ( 11) GGCCCAGA 1 chr2R:16924388-16924508 ( 85) GGCCAAGA 1 chr3L:783127-783247 ( 27) GGCCAAGA 1 chr2R:13165017-13165137 ( 21) GGCCAAGA 1 chr3L:18989751-18989871 ( 103) GGCCCAGC 1 chr3R:10125752-10125872 ( 46) GGCCAAGA 1 chr2L:14365720-14365840 ( 111) GGCCGGGC 1 chrX:19306687-19306807 ( 58) GGCAAGGG 1 chrX:14593220-14593340 ( 60) GGCCAGCA 1 chr3R:19902469-19902589 ( 11) GGCAAGGG 1 chr3L:1258761-1258881 ( 12) GGCCAGCA 1 chr3L:22408361-22408481 ( 102) GGCCAACA 1 chr3L:8374283-8374403 ( 4) GGCAAAGG 1 chr2R:20581708-20581828 ( 41) GGCCAACA 1 chr2L:18517410-18517530 ( 61) GGCCACCG 1 chr3L:13356191-13356311 ( 30) GGCCAAGT 1 chr2L:5259615-5259735 ( 100) GGCCAAGT 1 chr3R:26030629-26030749 ( 53) GGCACGGA 1 chrX:9987826-9987946 ( 27) GGCAGAGG 1 chr3L:6779580-6779700 ( 108) GGCAAGGC 1 chr2L:16315042-16315162 ( 84) GGCAAACG 1 chr3L:3134292-3134412 ( 45) GGCACACG 1 chr2L:11964055-11964175 ( 53) GGCACACG 1 chr3R:23526208-23526328 ( 49) GGCACAGC 1 chr3R:4966554-4966674 ( 95) GGCCGCGA 1 chr3R:8854822-8854942 ( 36) GGCACCGG 1 chr3L:11351349-11351469 ( 61) GGCCCACT 1 chr3L:11450676-11450796 ( 103) GGCCCACT 1 chr3L:1818970-1819090 ( 45) GGCAGGGC 1 chr3L:1674470-1674590 ( 102) GGCAGGGA 1 chr2R:11939434-11939554 ( 59) GGCCGCCA 1 chr2L:7434924-7435044 ( 84) GGCAAAGT 1 chr3L:4747239-4747359 ( 5) GGCCCGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCMARSR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4344 E= 4.1e+000 -1189 -1189 265 -1189 -1189 -1189 265 -1189 -1189 263 -1189 -1189 9 197 -1189 -1189 74 70 -1 -1189 74 -62 99 -1189 -371 108 199 -1189 9 -3 111 -134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCMARSR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 4.1e+000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.368421 0.631579 0.000000 0.000000 0.578947 0.263158 0.157895 0.000000 0.578947 0.105263 0.315789 0.000000 0.026316 0.342105 0.631579 0.000000 0.368421 0.157895 0.342105 0.131579 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCMARSR MEME-1 regular expression -------------------------------------------------------------------------------- GGC[CA][AC][AG][GC][AG] -------------------------------------------------------------------------------- Time 7.59 secs. ******************************************************************************** ******************************************************************************** MOTIF GSKGYKSS MEME-2 width = 8 sites = 29 llr = 256 E-value = 9.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSKGYKSS MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::1:: pos.-specific C 17::6:65 probability G 936a:344 matrix T ::4:46:: bits 2.7 * 2.4 * * 2.1 * * 1.9 * * Relative 1.6 ** * * Entropy 1.3 ** ** ** (12.7 bits) 1.1 ***** ** 0.8 ***** ** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGGCTCC consensus GT TGGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSKGYKSS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:16315042-16315162 93 2.70e-06 CGGCAAACGA GCGGCTCG AAGGGGATGG chr3R:24093641-24093761 1 8.00e-06 . GGGGCTCG CCAAAACAGC chr3L:22276752-22276872 72 1.44e-05 AGTTGGGAAC GGGGCTGC AAAATCAATA chr2L:15909839-15909959 81 1.44e-05 AAAATTTCAT GCTGCTCC GTCTGCTTAG chrX:17176621-17176741 26 1.99e-05 aaCGAGACCA GCTGCTCG AAAACAGCTG chr3R:20836339-20836459 21 1.99e-05 GTTAATGAGC GGGGCTGG CAAAGTGTTT chr2L:12010820-12010940 57 1.99e-05 TCCACTGTGC GCGGTGCG GTGTGGTGTG chrX:19964334-19964454 20 2.27e-05 GCTTTGAGAG GCGGTTCG TTGTTCAAAT chr2L:14011759-14011879 112 2.64e-05 TATAAATTGA GCTGCTGC A chr2R:20633554-20633674 63 2.64e-05 TGTTTTCGCT GCTGCTGC TGTTGTGCAG chr3L:13356191-13356311 100 3.10e-05 TAACTATTTG GCGGTTGC ATAAAGCGGT chr2L:14497971-14498091 55 3.10e-05 CATTATATGG GCGGTTGC CTGGGATCGC chr2L:7150893-7151013 5 3.10e-05 AGAT GCGGTGGG CATACTAGCA chr3L:3772719-3772839 10 3.10e-05 AATGTATTG GCGGTGGG TGCGTGAGAA chr3L:9424598-9424718 21 3.37e-05 AAAAATACAG GGTGCGCC CTTATGCTAA chr2R:16924388-16924508 101 3.74e-05 GAGCGTCATC GGTGCTCC AGGGTCTGAC chrX:9431553-9431673 111 4.29e-05 ATCGCAATAA GCGGCACC AC chr3R:22432253-22432373 34 4.29e-05 CATCCAGTTG GGTGCTCG ATAGCAAGTC chr3R:23460876-23460996 30 5.21e-05 GCAACCACGG GCTGTGCC TCATAAATTA chr3R:15091900-15092020 4 6.34e-05 AGG GGGGTTGC CTTCTTATTT chr3R:19569000-19569120 12 6.34e-05 TGAGTGGATG GCGGCAGC ATGAAGACAT chrX:17482960-17483080 59 7.00e-05 AATTTCGAAG GCTGTTCG AAGCACGATT chr2L:9522821-9522941 48 8.28e-05 GCTCCCTTTT GCTGTTGG TAGCCCCAAT chr2L:14365720-14365840 39 8.78e-05 TTTCTTCGGC GGTGTGCC AAGTCACATT chr2R:21709635-21709755 23 9.69e-05 TGCTTTTCTT CCGGCGGC ACAGTGAACG chr3L:17616959-17617079 57 9.69e-05 agggtttgtt ggtgtgcg tgtgctgtgt chr3L:22408361-22408481 68 1.07e-04 AATCTATCGT GCTGCACG CCAGTTTCGT chrX:6029348-6029468 92 1.27e-04 ATGGTTGAAA CGGGCGCC ATTGGATGCT chrX:6067549-6067669 11 1.38e-04 AAAAATTTAG GCGGCTCT CGCGATATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSKGYKSS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:16315042-16315162 2.7e-06 92_[+2]_20 chr3R:24093641-24093761 8e-06 [+2]_112 chr3L:22276752-22276872 1.4e-05 71_[+2]_41 chr2L:15909839-15909959 1.4e-05 80_[+2]_32 chrX:17176621-17176741 2e-05 25_[+2]_87 chr3R:20836339-20836459 2e-05 20_[+2]_92 chr2L:12010820-12010940 2e-05 56_[+2]_56 chrX:19964334-19964454 2.3e-05 19_[+2]_93 chr2L:14011759-14011879 2.6e-05 111_[+2]_1 chr2R:20633554-20633674 2.6e-05 62_[+2]_50 chr3L:13356191-13356311 3.1e-05 99_[+2]_13 chr2L:14497971-14498091 3.1e-05 54_[+2]_58 chr2L:7150893-7151013 3.1e-05 4_[+2]_108 chr3L:3772719-3772839 3.1e-05 9_[+2]_103 chr3L:9424598-9424718 3.4e-05 20_[+2]_92 chr2R:16924388-16924508 3.7e-05 100_[+2]_12 chrX:9431553-9431673 4.3e-05 110_[+2]_2 chr3R:22432253-22432373 4.3e-05 33_[+2]_79 chr3R:23460876-23460996 5.2e-05 29_[+2]_83 chr3R:15091900-15092020 6.3e-05 3_[+2]_109 chr3R:19569000-19569120 6.3e-05 11_[+2]_101 chrX:17482960-17483080 7e-05 58_[+2]_54 chr2L:9522821-9522941 8.3e-05 47_[+2]_65 chr2L:14365720-14365840 8.8e-05 38_[+2]_74 chr2R:21709635-21709755 9.7e-05 22_[+2]_90 chr3L:17616959-17617079 9.7e-05 56_[+2]_56 chr3L:22408361-22408481 0.00011 67_[+2]_45 chrX:6029348-6029468 0.00013 91_[+2]_21 chrX:6067549-6067669 0.00014 10_[+2]_102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSKGYKSS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSKGYKSS width=8 seqs=29 chr2L:16315042-16315162 ( 93) GCGGCTCG 1 chr3R:24093641-24093761 ( 1) GGGGCTCG 1 chr3L:22276752-22276872 ( 72) GGGGCTGC 1 chr2L:15909839-15909959 ( 81) GCTGCTCC 1 chrX:17176621-17176741 ( 26) GCTGCTCG 1 chr3R:20836339-20836459 ( 21) GGGGCTGG 1 chr2L:12010820-12010940 ( 57) GCGGTGCG 1 chrX:19964334-19964454 ( 20) GCGGTTCG 1 chr2L:14011759-14011879 ( 112) GCTGCTGC 1 chr2R:20633554-20633674 ( 63) GCTGCTGC 1 chr3L:13356191-13356311 ( 100) GCGGTTGC 1 chr2L:14497971-14498091 ( 55) GCGGTTGC 1 chr2L:7150893-7151013 ( 5) GCGGTGGG 1 chr3L:3772719-3772839 ( 10) GCGGTGGG 1 chr3L:9424598-9424718 ( 21) GGTGCGCC 1 chr2R:16924388-16924508 ( 101) GGTGCTCC 1 chrX:9431553-9431673 ( 111) GCGGCACC 1 chr3R:22432253-22432373 ( 34) GGTGCTCG 1 chr3R:23460876-23460996 ( 30) GCTGTGCC 1 chr3R:15091900-15092020 ( 4) GGGGTTGC 1 chr3R:19569000-19569120 ( 12) GCGGCAGC 1 chrX:17482960-17483080 ( 59) GCTGTTCG 1 chr2L:9522821-9522941 ( 48) GCTGTTGG 1 chr2L:14365720-14365840 ( 39) GGTGTGCC 1 chr2R:21709635-21709755 ( 23) CCGGCGGC 1 chr3L:17616959-17617079 ( 57) GGTGTGCG 1 chr3L:22408361-22408481 ( 68) GCTGCACG 1 chrX:6029348-6029468 ( 92) CGGGCGCC 1 chrX:6067549-6067669 ( 11) GCGGCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSKGYKSS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1765 E= 9.5e+001 -1150 -123 255 -1150 -1150 202 112 -1150 -1150 -1150 179 43 -1150 -1150 265 -1150 -1150 186 -1150 31 -174 -1150 96 82 -1150 186 138 -1150 -1150 168 149 -327 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSKGYKSS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 9.5e+001 0.000000 0.068966 0.931034 0.000000 0.000000 0.655172 0.344828 0.000000 0.000000 0.000000 0.551724 0.448276 0.000000 0.000000 1.000000 0.000000 0.000000 0.586207 0.000000 0.413793 0.103448 0.000000 0.310345 0.586207 0.000000 0.586207 0.413793 0.000000 0.000000 0.517241 0.448276 0.034483 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSKGYKSS MEME-2 regular expression -------------------------------------------------------------------------------- G[CG][GT]G[CT][TG][CG][CG] -------------------------------------------------------------------------------- Time 13.79 secs. ******************************************************************************** ******************************************************************************** MOTIF SGTGGGGG MEME-3 width = 8 sites = 3 llr = 40 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGTGGGGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 3::::::: probability G 7a:aaaaa matrix T ::a::::: bits 2.7 * ***** 2.4 * ***** 2.1 * ***** 1.9 ** ***** Relative 1.6 ******** Entropy 1.3 ******** (19.2 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGTGGGGG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGTGGGGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:8854822-8854942 2 8.56e-07 T GGTGGGGG GGATCGAAAT chr3L:21056010-21056130 94 8.56e-07 AAGGGAGCGA GGTGGGGG CCTTACAGGG chr3L:4747239-4747359 87 1.73e-06 CTGGAAGTCT CGTGGGGG AGCAGGGGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGTGGGGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:8854822-8854942 8.6e-07 1_[+3]_111 chr3L:21056010-21056130 8.6e-07 93_[+3]_19 chr3L:4747239-4747359 1.7e-06 86_[+3]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGTGGGGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGTGGGGG width=8 seqs=3 chr3R:8854822-8854942 ( 2) GGTGGGGG 1 chr3L:21056010-21056130 ( 94) GGTGGGGG 1 chr3L:4747239-4747359 ( 87) CGTGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGTGGGGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 1.5e+003 -823 104 206 -823 -823 -823 265 -823 -823 -823 -823 158 -823 -823 265 -823 -823 -823 265 -823 -823 -823 265 -823 -823 -823 265 -823 -823 -823 265 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGTGGGGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.5e+003 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGTGGGGG MEME-3 regular expression -------------------------------------------------------------------------------- [GC]GTGGGGG -------------------------------------------------------------------------------- Time 19.97 secs. ******************************************************************************** ******************************************************************************** MOTIF GYGCGHTG MEME-4 width = 8 sites = 12 llr = 121 E-value = 2.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYGCGHTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::3:: pos.-specific C :42a13:2 probability G a:8:9::8 matrix T :6:::4a: bits 2.7 * * 2.4 * * 2.1 * *** * 1.9 * *** * Relative 1.6 * *** ** Entropy 1.3 * *** ** (14.5 bits) 1.1 ***** ** 0.8 ***** ** 0.5 ***** ** 0.3 ******** 0.0 -------- Multilevel GTGCGTTG consensus C C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGCGHTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17482960-17483080 19 2.76e-06 GCAAACATAT GTGCGCTG GAAAAGTGTG chr2L:15909839-15909959 32 4.62e-06 TGCGTACGGA GCGCGTTG TCGTTTCGTT chr3L:639045-639165 36 8.45e-06 gtgtgtgtgt gtgcgttg tTTacgaaaa chr2L:171703-171823 60 8.45e-06 TGTACCTGTT GTGCGTTG AAAAAAAAAC chr3R:11661877-11661997 69 1.04e-05 AACTCCAATT GCGCGATG TTTAGCAGCG chrX:2591770-2591890 37 1.44e-05 CTCAAGTGAC GTGCGATG CACCAACGAT chr2R:9903462-9903582 38 1.44e-05 AGTTTTGTAC GTGCGATG AAGATTCTAC chr3L:783127-783247 5 2.00e-05 ATGG GTGCGCTC CGAGAAACCA chr3L:9341016-9341136 19 2.00e-05 ACGTGTATTG GTGCGCTC GGTAAACTCA chr3L:11393937-11394057 60 2.38e-05 TATGGGTGTA GCCCGTTG CCAGTTGCCT chr3R:19902469-19902589 100 2.38e-05 CGCCACTGTG GCCCGTTG ACCGCGAGCA chr3R:22432253-22432373 94 3.25e-05 CGAGGCTGAC GCGCCCTG AACTCGGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGCGHTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17482960-17483080 2.8e-06 18_[+4]_94 chr2L:15909839-15909959 4.6e-06 31_[+4]_81 chr3L:639045-639165 8.4e-06 35_[+4]_77 chr2L:171703-171823 8.4e-06 59_[+4]_53 chr3R:11661877-11661997 1e-05 68_[+4]_44 chrX:2591770-2591890 1.4e-05 36_[+4]_76 chr2R:9903462-9903582 1.4e-05 37_[+4]_75 chr3L:783127-783247 2e-05 4_[+4]_108 chr3L:9341016-9341136 2e-05 18_[+4]_94 chr3L:11393937-11394057 2.4e-05 59_[+4]_53 chr3R:19902469-19902589 2.4e-05 99_[+4]_13 chr3R:22432253-22432373 3.3e-05 93_[+4]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGCGHTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYGCGHTG width=8 seqs=12 chrX:17482960-17483080 ( 19) GTGCGCTG 1 chr2L:15909839-15909959 ( 32) GCGCGTTG 1 chr3L:639045-639165 ( 36) GTGCGTTG 1 chr2L:171703-171823 ( 60) GTGCGTTG 1 chr3R:11661877-11661997 ( 69) GCGCGATG 1 chrX:2591770-2591890 ( 37) GTGCGATG 1 chr2R:9903462-9903582 ( 38) GTGCGATG 1 chr3L:783127-783247 ( 5) GTGCGCTC 1 chr3L:9341016-9341136 ( 19) GTGCGCTC 1 chr3L:11393937-11394057 ( 60) GCCCGTTG 1 chr3R:19902469-19902589 ( 100) GCCCGTTG 1 chr3R:22432253-22432373 ( 94) GCGCCCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGCGHTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.648 E= 2.7e+004 -1023 -1023 265 -1023 -1023 137 -1023 81 -1023 4 239 -1023 -1023 263 -1023 -1023 -1023 -95 253 -1023 -47 104 -1023 32 -1023 -1023 -1023 159 -1023 4 239 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGCGHTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.7e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.416667 0.000000 0.583333 0.000000 0.166667 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.250000 0.333333 0.000000 0.416667 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.833333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGCGHTG MEME-4 regular expression -------------------------------------------------------------------------------- G[TC]GCG[TCA]TG -------------------------------------------------------------------------------- Time 26.16 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGMCGCC MEME-5 width = 8 sites = 4 llr = 51 E-value = 1.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGMCGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::35:::: pos.-specific C :a:5a:aa probability G a:8::a:: matrix T :::::::: bits 2.7 ** **** 2.4 ** **** 2.1 ** **** 1.9 ** **** Relative 1.6 *** **** Entropy 1.3 *** **** (18.5 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGACGCC consensus AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMCGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:1674470-1674590 53 4.49e-07 AGCGTCGACT GCGCCGCC CGGCGTTTCG chr3R:19902469-19902589 86 1.41e-06 CCCCTTTTCA GCGACGCC ACTGTGGCCC chr3R:22666588-22666708 87 1.41e-06 gacgccgact gcgacgcc GGCAGACAAC chrX:10233266-10233386 49 2.39e-06 TACTTTACAA GCACCGCC CTTTTTTATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMCGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1674470-1674590 4.5e-07 52_[+5]_60 chr3R:19902469-19902589 1.4e-06 85_[+5]_27 chr3R:22666588-22666708 1.4e-06 86_[+5]_26 chrX:10233266-10233386 2.4e-06 48_[+5]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMCGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGMCGCC width=8 seqs=4 chr3L:1674470-1674590 ( 53) GCGCCGCC 1 chr3R:19902469-19902589 ( 86) GCGACGCC 1 chr3R:22666588-22666708 ( 87) GCGACGCC 1 chrX:10233266-10233386 ( 49) GCACCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMCGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 1.3e+004 -865 -865 265 -865 -865 263 -865 -865 -47 -865 223 -865 53 163 -865 -865 -865 263 -865 -865 -865 -865 265 -865 -865 263 -865 -865 -865 263 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMCGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.3e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMCGCC MEME-5 regular expression -------------------------------------------------------------------------------- GC[GA][AC]CGCC -------------------------------------------------------------------------------- Time 32.33 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:15105675-15105795 1.12e-01 120 chr3R:23438353-23438473 7.73e-02 101_[+3(3.60e-05)]_11 chr2R:20633554-20633674 3.37e-02 59_[+2(2.64e-05)]_53 chr3L:1674470-1674590 4.86e-06 22_[+5(5.44e-05)]_22_[+5(4.49e-07)]_\ 60 chr2R:20581708-20581828 1.34e-02 40_[+1(5.43e-05)]_72 chr3L:6779580-6779700 2.45e-02 107_[+1(8.92e-05)]_5 chr3R:10125752-10125872 4.30e-03 45_[+1(2.39e-05)]_67 chr2R:7896324-7896444 9.61e-01 120 chr3L:17055664-17055784 3.00e-03 102_[+1(1.14e-05)]_10 chrX:9987826-9987946 2.54e-01 26_[+1(8.92e-05)]_86 chr2L:11964055-11964175 2.42e-03 52_[+1(9.66e-05)]_60 chr3R:19569000-19569120 6.09e-03 11_[+2(6.34e-05)]_101 chr3R:22432253-22432373 1.12e-04 33_[+2(4.29e-05)]_52_[+4(3.25e-05)]_\ 19 chr3R:5392734-5392854 6.84e-03 120 chr3R:25437428-25437548 2.09e-02 120 chr3L:18989751-18989871 2.13e-02 102_[+1(2.39e-05)]_10 chr2L:14271563-14271683 7.17e-02 120 chr2L:15106273-15106393 6.40e-01 120 chr2L:171703-171823 6.56e-03 59_[+4(8.45e-06)]_53 chr3R:23460876-23460996 1.04e-02 29_[+2(5.21e-05)]_83 chr2L:17741665-17741785 8.36e-01 120 chr3L:16840641-16840761 9.74e-01 120 chr3L:8374283-8374403 5.80e-03 3_[+1(5.43e-05)]_109 chr2L:2173753-2173873 4.26e-04 104_[+1(1.36e-06)]_8 chr3L:2582045-2582165 1.11e-01 120 chr2R:16848205-16848325 1.73e-01 120 chr3L:1258761-1258881 2.32e-02 11_[+1(3.54e-05)]_101 chr2R:15245064-15245184 4.60e-04 41_[+4(9.48e-05)]_71 chr2R:20082939-20083059 1.14e-01 120 chr3L:7811083-7811203 9.78e-01 120 chr3R:4966554-4966674 4.40e-02 120 chrX:9202462-9202582 9.96e-01 120 chr3L:22408361-22408481 3.50e-04 101_[+1(5.43e-05)]_11 chr3R:22666588-22666708 2.64e-05 54_[+1(1.44e-05)]_24_[+5(1.41e-06)]_\ 26 chr2R:13165017-13165137 8.28e-02 20_[+1(2.39e-05)]_92 chr3L:4461771-4461891 7.49e-01 120 chr3R:10274965-10275085 9.27e-01 120 chrX:6029348-6029468 6.61e-03 120 chr3L:8288569-8288689 3.80e-01 120 chr3R:17007474-17007594 5.27e-01 120 chrX:11515658-11515778 5.53e-01 120 chr3L:16289221-16289341 4.49e-01 120 chrX:6542455-6542575 9.91e-01 120 chrX:3109040-3109160 6.88e-02 120 chr3L:9341016-9341136 1.02e-02 18_[+4(2.00e-05)]_94 chr3L:783127-783247 1.61e-04 4_[+4(2.00e-05)]_14_[+1(2.39e-05)]_\ 86 chrX:9350437-9350557 1.00e+00 120 chr3L:1818970-1819090 1.07e-03 120 chr3R:23526208-23526328 4.38e-03 49_[+5(8.80e-05)]_63 chr3L:3772719-3772839 4.70e-03 9_[+2(3.10e-05)]_103 chr3L:332126-332246 4.30e-02 120 chr2R:11939434-11939554 4.20e-03 120 chr3R:19902469-19902589 5.18e-09 10_[+1(3.54e-05)]_67_[+5(1.41e-06)]_\ 6_[+4(2.38e-05)]_13 chr2L:7492647-7492767 1.00e+00 120 chr3R:20003201-20003321 5.45e-02 120 chrX:11848693-11848813 3.77e-01 120 chr3L:639045-639165 2.49e-03 35_[+4(8.45e-06)]_77 chr2L:9522821-9522941 6.17e-02 47_[+2(8.28e-05)]_65 chr3R:17611968-17612088 9.13e-01 120 chr2L:15909839-15909959 4.49e-06 31_[+4(4.62e-06)]_41_[+2(1.44e-05)]_\ 32 chr2L:12010820-12010940 1.52e-04 56_[+2(1.99e-05)]_56 chr3R:23210379-23210499 9.92e-01 120 chrX:11885487-11885607 2.72e-01 120 chr3L:4747239-4747359 3.47e-05 86_[+3(1.73e-06)]_3_[+3(7.11e-05)]_\ 15 chr2R:13996747-13996867 6.50e-01 120 chr2L:14365720-14365840 4.44e-04 38_[+2(8.78e-05)]_64_[+1(2.71e-05)]_\ 2 chr3L:10523026-10523146 9.49e-01 120 chrX:8206079-8206199 7.99e-01 120 chr3R:9702115-9702235 2.84e-01 120 chr2L:19415924-19416044 9.94e-01 120 chrX:13109858-13109978 7.25e-01 120 chr2R:13261850-13261970 6.28e-01 120 chr3L:4509080-4509200 9.49e-01 120 chrX:17482960-17483080 4.54e-04 18_[+4(2.76e-06)]_32_[+2(7.00e-05)]_\ 54 chr2R:18374581-18374701 1.00e+00 120 chr3R:12451489-12451609 9.88e-01 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-------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************