******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG15073.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:16595117-16595237 1.0000 120 chr3R:19586458-19586578 1.0000 120 chr3L:13452409-13452529 1.0000 120 chr2R:16765122-16765242 1.0000 120 chr2R:19557940-19558060 1.0000 120 chr4:731608-731728 1.0000 120 chr2R:16770052-16770172 1.0000 120 chr2R:14276790-14276910 1.0000 120 chr3R:5188051-5188171 1.0000 120 chr3R:30237133-30237253 1.0000 120 chr2R:21292734-21292854 1.0000 120 chr3R:27547654-27547774 1.0000 120 chr3R:11618123-11618243 1.0000 120 chr3L:11069927-11070047 1.0000 120 chr2L:15053128-15053248 1.0000 120 chr3L:10638622-10638742 1.0000 120 chr3R:7541426-7541546 1.0000 120 chrX:4240304-4240424 1.0000 120 chr3R:8161045-8161165 1.0000 120 chr2R:11223348-11223468 1.0000 120 chr2L:6475028-6475148 1.0000 120 chr2R:18766123-18766243 1.0000 120 chrX:12742760-12742880 1.0000 120 chr2R:18957164-18957284 1.0000 120 chr2L:21078004-21078124 1.0000 120 chrX:2146711-2146831 1.0000 120 chrX:20723507-20723627 1.0000 120 chr2R:19341519-19341639 1.0000 120 chr2R:25015809-25015929 1.0000 120 chr3R:25721169-25721289 1.0000 120 chr3R:25447028-25447148 1.0000 120 chr2L:7118774-7118894 1.0000 120 chr3R:6206488-6206608 1.0000 120 chrX:15577715-15577835 1.0000 120 chr3R:11619078-11619198 1.0000 120 chrX:17774700-17774820 1.0000 120 chr3R:19607711-19607831 1.0000 120 chr3R:19594076-19594196 1.0000 120 chr2R:7889417-7889537 1.0000 120 chr2R:16431736-16431856 1.0000 120 chr2R:6666016-6666136 1.0000 120 chr3R:19610800-19610920 1.0000 120 chrX:7252672-7252792 1.0000 120 chr2R:17374645-17374765 1.0000 120 chr2L:10180519-10180639 1.0000 120 chr2R:19368529-19368649 1.0000 120 chr3L:9814973-9815093 1.0000 120 chr2R:18766331-18766451 1.0000 120 chrX:16458719-16458839 1.0000 120 chr3L:20401165-20401285 1.0000 120 chr3R:5287434-5287554 1.0000 120 chr2R:11099671-11099791 1.0000 120 chrX:2482593-2482713 1.0000 120 chr2L:12001127-12001247 1.0000 120 chr3R:25754008-25754128 1.0000 120 chr3L:273696-273816 1.0000 120 chrX:18321473-18321593 1.0000 120 chr3R:21863011-21863131 1.0000 120 chr2R:16764326-16764446 1.0000 120 chr2L:1047645-1047765 1.0000 120 chr2R:5731770-5731890 1.0000 120 chr2R:11384482-11384602 1.0000 120 chr2R:21468124-21468244 1.0000 120 chr3L:21524233-21524353 1.0000 120 chr2L:16263816-16263936 1.0000 120 chr3L:10518144-10518264 1.0000 120 chr2R:18227969-18228089 1.0000 120 chrX:16940498-16940618 1.0000 120 chr3L:21523596-21523716 1.0000 120 chr3L:16884195-16884315 1.0000 120 chr3L:15318726-15318846 1.0000 120 chr3R:25387547-25387667 1.0000 120 chr2L:12421970-12422090 1.0000 120 chr3R:5595058-5595178 1.0000 120 chrX:278505-278625 1.0000 120 chrX:12716466-12716586 1.0000 120 chrX:12716266-12716386 1.0000 120 chrX:3556996-3557116 1.0000 120 chrX:2470386-2470506 1.0000 120 chr2L:20891225-20891345 1.0000 120 chr3R:24038919-24039039 1.0000 120 chr2L:12422189-12422309 1.0000 120 chr2R:24534492-24534612 1.0000 120 chr3L:9815749-9815869 1.0000 120 chr2R:8435000-8435120 1.0000 120 chrX:9193410-9193530 1.0000 120 chrX:17506417-17506537 1.0000 120 chr2L:10544040-10544160 1.0000 120 chr2R:25114457-25114577 1.0000 120 chrX:1308660-1308780 1.0000 120 chrX:18320080-18320200 1.0000 120 chr3R:29292410-29292530 1.0000 120 chrX:15817359-15817479 1.0000 120 chr3L:9003547-9003667 1.0000 120 chr3R:10368331-10368451 1.0000 120 chrX:12742971-12743091 1.0000 120 chr3R:8732931-8733051 1.0000 120 chr3R:17615318-17615438 1.0000 120 chr3R:23965578-23965698 1.0000 120 chr2R:14907409-14907529 1.0000 120 chr3R:24628555-24628675 1.0000 120 chr3R:12723900-12724020 1.0000 120 chr3L:22680993-22681113 1.0000 120 chrX:1200660-1200780 1.0000 120 chr3L:10334769-10334889 1.0000 120 chr2L:23512817-23512937 1.0000 120 chr2R:8957162-8957282 1.0000 120 chrX:2470182-2470302 1.0000 120 chr3R:17059099-17059219 1.0000 120 chr3R:19879915-19880035 1.0000 120 chr3R:4962758-4962878 1.0000 120 chr4:834305-834425 1.0000 120 chr3R:4605725-4605845 1.0000 120 chr2L:10849631-10849751 1.0000 120 chr2L:18708224-18708344 1.0000 120 chr2L:18708012-18708132 1.0000 120 chr2L:7799552-7799672 1.0000 120 chr2R:14275458-14275578 1.0000 120 chrX:8412223-8412343 1.0000 120 chr2R:23656786-23656906 1.0000 120 chrX:8491912-8492032 1.0000 120 chr2R:14219420-14219540 1.0000 120 chr3L:22071786-22071906 1.0000 120 chr3R:24056609-24056729 1.0000 120 chr3R:24626828-24626948 1.0000 120 chr3R:5282869-5282989 1.0000 120 chr3R:19880990-19881110 1.0000 120 chr3R:13041813-13041933 1.0000 120 chr3R:18585698-18585818 1.0000 120 chr3R:11235828-11235948 1.0000 120 chr3L:14622446-14622566 1.0000 120 chr3L:21036253-21036373 1.0000 120 chr2R:16766135-16766255 1.0000 120 chr3R:21064691-21064811 1.0000 120 chr2L:14481297-14481417 1.0000 120 chr3L:14624869-14624989 1.0000 120 chr2R:20916749-20916869 1.0000 120 chr2L:10082047-10082167 1.0000 120 chrX:13878991-13879111 1.0000 120 chrX:21055021-21055141 1.0000 120 chr2L:19162947-19163067 1.0000 120 chr2L:19159572-19159692 1.0000 120 chr3R:24767579-24767699 1.0000 120 chr2L:12508118-12508238 1.0000 120 chr2R:10438915-10439035 1.0000 120 chr3R:21064492-21064612 1.0000 120 chrX:19353291-19353411 1.0000 120 chr3L:13021930-13022050 1.0000 120 chr3R:23760576-23760696 1.0000 120 chr3R:21863213-21863333 1.0000 120 chr2L:7425798-7425918 1.0000 120 chr3L:14671656-14671776 1.0000 120 chr2L:14589096-14589216 1.0000 120 chrX:2302579-2302699 1.0000 120 chr3R:6791459-6791579 1.0000 120 chr2L:13881486-13881606 1.0000 120 chrX:13754494-13754614 1.0000 120 chrX:18635441-18635561 1.0000 120 chr2R:8928063-8928183 1.0000 120 chr3R:8113411-8113531 1.0000 120 chr2R:25114659-25114779 1.0000 120 chr3R:24607133-24607253 1.0000 120 chrX:15071257-15071377 1.0000 120 chrX:3297717-3297837 1.0000 120 chr2L:19161330-19161450 1.0000 120 chr3R:17708975-17709095 1.0000 120 chr3R:5781955-5782075 1.0000 120 chr2L:7033428-7033548 1.0000 120 chr3R:19880791-19880911 1.0000 120 chr3L:6703556-6703676 1.0000 120 chr3L:7435342-7435462 1.0000 120 chr3R:16934166-16934286 1.0000 120 chr3R:25662533-25662653 1.0000 120 chr2L:73134-73254 1.0000 120 chr2R:1521582-1521702 1.0000 120 chr3R:31945833-31945953 1.0000 120 chr3L:18667892-18668012 1.0000 120 chr3L:15563030-15563150 1.0000 120 chr2R:10439116-10439236 1.0000 120 chr2L:15751109-15751229 1.0000 120 chrX:19566118-19566238 1.0000 120 chr3L:12139221-12139341 1.0000 120 chr3R:15139663-15139783 1.0000 120 chr2R:20533034-20533154 1.0000 120 chr2L:5045280-5045400 1.0000 120 chr2L:10849832-10849952 1.0000 120 chr2R:11198224-11198344 1.0000 120 chr2L:14022584-14022704 1.0000 120 chr2L:470038-470158 1.0000 120 chr2R:5776460-5776580 1.0000 120 chr3L:13450683-13450803 1.0000 120 chrX:21373950-21374070 1.0000 120 chr2R:8925604-8925724 1.0000 120 chr3L:8074142-8074262 1.0000 120 chr2L:11808034-11808154 1.0000 120 chrX:3694109-3694229 1.0000 120 chr3R:18731358-18731478 1.0000 120 chr3R:21640240-21640360 1.0000 120 chr3R:23760788-23760908 1.0000 120 chr2R:10564174-10564294 1.0000 120 chr3R:14557997-14558117 1.0000 120 chr3R:21739787-21739907 1.0000 120 chr2L:12040781-12040901 1.0000 120 chr3L:19337699-19337819 1.0000 120 chr3L:20185381-20185501 1.0000 120 chr3R:9014204-9014324 1.0000 120 chr3L:21349272-21349392 1.0000 120 chr2R:23079214-23079334 1.0000 120 chr2R:8922679-8922799 1.0000 120 chr2R:20316202-20316322 1.0000 120 chrX:2355842-2355962 1.0000 120 chr3R:21720059-21720179 1.0000 120 chrX:13383894-13384014 1.0000 120 chrX:3967964-3968084 1.0000 120 chr2L:18377349-18377469 1.0000 120 chrX:13257255-13257375 1.0000 120 chr2R:1515597-1515717 1.0000 120 chr3L:17379430-17379550 1.0000 120 chr3L:20395689-20395809 1.0000 120 chr2R:17714448-17714568 1.0000 120 chr2L:16285054-16285174 1.0000 120 chr3R:7936714-7936834 1.0000 120 chr4:980250-980370 1.0000 120 chr3L:12139421-12139541 1.0000 120 chr3L:775021-775141 1.0000 120 chr2L:12055867-12055987 1.0000 120 chr3L:20185586-20185706 1.0000 120 chr2R:12437181-12437301 1.0000 120 chr3L:3566979-3567099 1.0000 120 chr3L:13022134-13022254 1.0000 120 chr3L:17532285-17532405 1.0000 120 chr3R:29772937-29773057 1.0000 120 chrX:6643077-6643197 1.0000 120 chr2R:18357667-18357787 1.0000 120 chr2R:9092751-9092871 1.0000 120 chrX:11391194-11391314 1.0000 120 chrX:5312027-5312147 1.0000 120 chr3L:11370522-11370642 1.0000 120 chr2L:11970780-11970900 1.0000 120 chr3R:19094001-19094121 1.0000 120 chrX:18789687-18789807 1.0000 120 chrX:18789932-18790052 1.0000 120 chr3R:25445603-25445723 1.0000 120 chr2R:15381284-15381404 1.0000 120 chr3L:18349381-18349501 1.0000 120 chr3R:25880404-25880524 1.0000 120 chrX:17531952-17532072 1.0000 120 chr2L:9496556-9496676 1.0000 120 chrX:19496286-19496406 1.0000 120 chr2R:10103693-10103813 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG15073/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG15073.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.273 C 0.224 G 0.228 T 0.276 Background letter frequencies (from file dataset with add-one prior applied): A 0.273 C 0.224 G 0.228 T 0.276 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ACAGTSGC MEME-1 width = 8 sites = 106 llr = 898 E-value = 9.2e-079 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACAGTSGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A a:9::::: pos.-specific C :a:1:5:6 probability G :::9:591 matrix T ::1:a::3 bits 2.2 * 1.9 ** * 1.7 ** * * 1.5 ** ** * Relative 1.3 ***** * Entropy 1.1 ******* (12.2 bits) 0.9 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACAGTGGC consensus C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGTSGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17714448-17714568 28 1.22e-05 TCGTCGGGAC ACAGTGGC TTCCCAAATG chr3R:9014204-9014324 66 1.22e-05 CAGTCATGGC ACAGTGGC GGCCGTACAA chr2R:10564174-10564294 53 1.22e-05 CAACCGCATT ACAGTGGC GGCCAACGTG chr2L:14022584-14022704 43 1.22e-05 AGTGTATGGC ACAGTGGC GGTCAAAAAA chr3L:12139221-12139341 51 1.22e-05 ACTCCCATTT ACAGTGGC GGCCTAAAGG chr3R:19880791-19880911 48 1.22e-05 GCCTGCATTC ACAGTGGC GGTCATTAAA chr2R:8928063-8928183 60 1.22e-05 CTTGCCACGC ACAGTGGC GTCGCGCAGC chr2R:10438915-10439035 85 1.22e-05 CATTGCACAG ACAGTGGC GGTCATAAAA chr3R:5282869-5282989 26 1.22e-05 CTGATGGCCA ACAGTGGC GGTGTTCAGC chrX:8491912-8492032 71 1.22e-05 AGCGGTGCCC ACAGTGGC GGCGAGAAAA chr2R:14907409-14907529 33 1.22e-05 TATCTGCTTT ACAGTGGC GGCCAACGAA chr2R:25114457-25114577 42 1.22e-05 CAAAGCGACG ACAGTGGC TTCCATTCCA chrX:278505-278625 78 1.22e-05 ACAACCTATA ACAGTGGC GTCCTTCACT chr2L:16263816-16263936 50 1.22e-05 CCGGGTCTCA ACAGTGGC GTCCGAGCAG chrX:16458719-16458839 75 1.22e-05 CGTTGGGCAT ACAGTGGC GGTGCAAATA chr3L:9814973-9815093 14 1.22e-05 TGGCCAACTT ACAGTGGC GGTTGGAAAA chr2R:17374645-17374765 96 1.22e-05 GGCGCCGGCA ACAGTGGC GTCTCCATCG chr3R:8161045-8161165 19 1.22e-05 TCGCGTCGCC ACAGTGGC GTCGATGTGG chr3L:11069927-11070047 45 1.22e-05 TCTTATAAGT ACAGTGGC GGCTGGAAAA chr2R:21292734-21292854 28 1.22e-05 GCCAACCTAT ACAGTGGC GTCCGATTAG chr2L:9496556-9496676 32 2.43e-05 ATAGATTCAA ACAGTCGC GGTTTTAACT chr3L:3566979-3567099 31 2.43e-05 CCACATTCGC ACAGTCGC TGCGAAAATA chr2L:12040781-12040901 11 2.43e-05 TCAAAAAATA ACAGTCGC AGTCGACGGC chrX:19566118-19566238 71 2.43e-05 TGCAGCGATT ACAGTCGC GTCCCTGATC chr3L:15563030-15563150 40 2.43e-05 CTGCGTATCC ACAGTCGC GTCGCATAGT chr3R:31945833-31945953 83 2.43e-05 TGTTAAACGC ACAGTCGC GGGTATTCGG chr2L:73134-73254 30 2.43e-05 AGCTGTTCGC ACAGTCGC GGTCGGACAG chrX:19353291-19353411 25 2.43e-05 AATTGAATGG ACAGTCGC GGTTAACGAA chr2R:20916749-20916869 43 2.43e-05 TCAGCGGGCC ACAGTCGC TGCCTTCGAG chr3L:14622446-14622566 46 2.43e-05 AAAGCTTTCA ACAGTCGC TTCCCACTAA chr3R:24626828-24626948 42 2.43e-05 CGGGGGAATC ACAGTCGC TGGTCTGTTG chr2L:10849631-10849751 31 2.43e-05 AATGCGACTC ACAGTCGC GGTAGGAATA chrX:1200660-1200780 14 2.43e-05 ACGTCTGGGA ACAGTCGC CGTCGATCGG chr3R:29292410-29292530 31 2.43e-05 TTTGGTTGAC ACAGTCGC GGCCTCTTCA chrX:18320080-18320200 25 2.43e-05 GTCTTTACTA ACAGTCGC GTCCCAAAAA chr3L:273696-273816 43 2.43e-05 GGAGGCCGAA ACAGTCGC ATCCACAACA chr2R:18957164-18957284 83 2.43e-05 acGGGCAGTC ACAGTCGC AGCAGCAGCC chr3R:7541426-7541546 40 2.43e-05 GTTAACAGTC ACAGTCGC GTACCACATA chr3L:10638622-10638742 57 2.43e-05 TCCCGTCTTC ACAGTCGC CACCCTAACA chr3R:30237133-30237253 53 2.43e-05 ACAGTTGGGT ACAGTCGC GTCCCAGGCA chr2R:16770052-16770172 46 2.43e-05 GAACCTGGCC ACAGTCGC GTCCCAACGA chr3L:13452409-13452529 53 2.43e-05 CGCCAAATCG ACAGTCGC CTCTGGGCAC chr3R:16595117-16595237 25 2.43e-05 AGTCGCAAAc acagtcgc ggccaaagtc chr2L:11970780-11970900 35 3.93e-05 GATAGTATAT ACAGTGGT GTTCGTTTCC chr3L:20395689-20395809 39 3.93e-05 ACATCAGATG ACAGTGGT GGGACCTCCG chrX:13383894-13384014 101 3.93e-05 TGTATGGCTA ACAGTGGT GTCCCACCGT chr3L:20185381-20185501 70 3.93e-05 CTGTATTGCC ACAGTGGT GTTTCGAAAA chr2R:20533034-20533154 61 3.93e-05 AGTGCATTCG ACAGTGGT GGCACGATGG chr3R:4962758-4962878 27 3.93e-05 ATGAATATGT ACAGTGGT GGCAGTATGC chr2L:10544040-10544160 64 3.93e-05 TGAGCCACTT ACAGTGGT GGTACTCCAA chrX:12716266-12716386 44 3.93e-05 CACGCAACAC ACAGTGGT GGCTCAAAAA chrX:2482593-2482713 61 3.93e-05 CAAGTAAACC ACAGTGGT GGCACCAATT chr3R:25447028-25447148 62 3.93e-05 TCGATTAAAT ACAGTGGT GGGTCATAAA chr2R:25015809-25015929 43 3.93e-05 TTTCTTGGCC ACAGTGGT GGTCCGAAAT chr3R:27547654-27547774 52 3.93e-05 TACATTTGAT ACAGTGGT GGCCTTTACA chr3R:19586458-19586578 73 3.93e-05 GTACTGGCTA ACAGTGGT TGGCTGAAAT chrX:2355842-2355962 34 5.41e-05 CAACCTTAAC ACAGTCGT GTCTTCGGTC chr2L:7033428-7033548 48 5.41e-05 GGCATTTGAT ACAGTCGT GTACTGCAGT chr3R:21064492-21064612 60 5.41e-05 ATTAAGAGAT ACAGTCGT GGTTCTTTTA chr2L:10082047-10082167 56 5.41e-05 ACAGAAAGAC ACAGTCGT GGTCAGGAAA chr3L:21036253-21036373 30 5.41e-05 GCTAATCGAC ACAGTCGT GGTCGCAAAA chr3R:18585698-18585818 32 5.41e-05 ACTTATGAAT ACAGTCGT GGGCGAAAAA chrX:15817359-15817479 62 5.41e-05 AGCCAAACAT ACAGTCGT TTCCGTTTCG chr2L:20891225-20891345 27 5.41e-05 CTGGCAGTCA ACAGTCGT GTCCCGCAAC chr3L:15318726-15318846 75 5.41e-05 TATCCTGCCT ACAGTCGT GGCGCAAATA chr2R:5731770-5731890 24 5.41e-05 acacacacat acaGTCGT GGACCCGACA chr2R:5776460-5776580 44 6.65e-05 CGTTTCCgtg actgtggc tgtgactatg chr3L:6703556-6703676 52 6.65e-05 CTGGGACGCG ACTGTGGC TTAAGAGTCG chr3R:17708975-17709095 65 6.65e-05 TTTGGCGCCC ACTGTGGC GTGTGTGTAC chr2R:11384482-11384602 30 6.65e-05 ATACCTTATC ACTGTGGC GTCATAAAAT chr2L:6475028-6475148 77 6.65e-05 CAtggctgtg actgtggc cagtgccgtg chr3R:11618123-11618243 78 6.65e-05 ACTGGCCACC ACTGTGGC AGGGAGTGAC chr2R:20316202-20316322 69 7.87e-05 CCGGGACGCC ACTGTCGC GTTGGGGATG chr3R:14557997-14558117 91 7.87e-05 CCGGACCGTC ACTGTCGC CAAACACAAA chr3L:8074142-8074262 50 1.03e-04 AAAGCGGCAA ACACTGGC GGGAAAAAAA chr2R:14275458-14275578 31 1.03e-04 TGCGAGTAGC ACACTGGC GGTCGAAATT chrX:17506417-17506537 35 1.03e-04 AGTGCTGCGA ACACTGGC TTACACACAA chr2R:11099671-11099791 42 1.03e-04 ACGAACAGGA ACAGTGGG GGCCGAAATG chr3L:11370522-11370642 47 1.27e-04 GTATCTACAC ACACTCGC AGATGTGAAA chrX:11391194-11391314 87 1.27e-04 CACTGTGCGC ACACTCGC ACTCACACAG chr3L:13450683-13450803 110 1.27e-04 GAAGCTGCGG ACAGTCGG ATA chr3L:21523596-21523716 103 1.27e-04 ACGAGCTAAG ACAGTCGG GGGCGAAAGT chr2R:19368529-19368649 6 1.27e-04 GTATT ACACTCGC GTCCCTGCAT chr2L:15751109-15751229 39 1.42e-04 cattactcat acagtgga gggtatacta chr2R:11198224-11198344 36 1.57e-04 GGCGAAAAAA ACAGTCGA GGCGCGCCAT chr3L:18667892-18668012 57 1.57e-04 CGACGGAGGA ACAGTCGA GTCCGAAAAG chr3R:4605725-4605845 11 1.57e-04 TAATCTAGTA ACAGTCGA GGTACTCGAC chr2R:18227969-18228089 27 1.57e-04 TGATGGCGCG ACAGTCGA GGTCGCAGGC chr3R:23760576-23760696 56 1.71e-04 TTATCGGTAA ACAGTAGC GGTCAAGATA chr4:731608-731728 23 1.71e-04 CATAGAGTGC ACAGTAGC ATCAAAATTC chrX:19496286-19496406 60 2.16e-04 TGCTAACAGC ACAGTGAC GGCCACTCGC chr2R:18357667-18357787 71 2.43e-04 CAATTTGTTT ACAGTGCC GTCGTGTGGT chr2R:14219420-14219540 23 2.43e-04 GGCAAAGTCA ACAGTCAC ATCCATACCA chr2L:16285054-16285174 49 2.69e-04 TATACCGTCC ACACTGGT GGCAAAAATA chr3L:14624869-14624989 24 2.69e-04 TTAGTGTGAA ACAGTCCC TTTTGAGCCT chr2L:1047645-1047765 38 2.69e-04 GGTTGCGAAA ACACTGGT GGCATATGGC chr3R:13041813-13041933 33 2.98e-04 TTTTCAGAAG ACAATGGC CAAAGAATTT chrX:12742760-12742880 49 2.98e-04 TCGAACCGAC ACAATGGC ATCCCGTATT chrX:3297717-3297837 51 3.13e-04 ACTACACTAC ACAATCGC ATGGTTGGAA chr2L:11808034-11808154 42 3.31e-04 TGTGTGTGCA ACAGTAGT GGCAATCAGA chr3R:25880404-25880524 21 3.49e-04 ATGGAGAGAT ACAGTGAT GTCGCTTTTA chrX:15071257-15071377 64 3.81e-04 AGCGGACCGT ACAGTGCT GTCCCGATAA chrX:4240304-4240424 46 3.81e-04 GGGCAAATCA ACAGTCAT GGCACAAAAT chr3L:10518144-10518264 111 4.21e-04 AAGCCGTCAA ACTGTGGG GC chr3R:5287434-5287554 111 4.21e-04 GAGGGACGCG ACTGTGGG TG chrX:15577715-15577835 50 4.21e-04 ATCGGACACG ACTGTGGG TAGGTTTTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGTSGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17714448-17714568 1.2e-05 27_[+1]_85 chr3R:9014204-9014324 1.2e-05 65_[+1]_47 chr2R:10564174-10564294 1.2e-05 52_[+1]_60 chr2L:14022584-14022704 1.2e-05 42_[+1]_70 chr3L:12139221-12139341 1.2e-05 50_[+1]_62 chr3R:19880791-19880911 1.2e-05 47_[+1]_65 chr2R:8928063-8928183 1.2e-05 59_[+1]_53 chr2R:10438915-10439035 1.2e-05 84_[+1]_28 chr3R:5282869-5282989 1.2e-05 25_[+1]_87 chrX:8491912-8492032 1.2e-05 70_[+1]_42 chr2R:14907409-14907529 1.2e-05 32_[+1]_80 chr2R:25114457-25114577 1.2e-05 41_[+1]_71 chrX:278505-278625 1.2e-05 77_[+1]_35 chr2L:16263816-16263936 1.2e-05 49_[+1]_63 chrX:16458719-16458839 1.2e-05 74_[+1]_38 chr3L:9814973-9815093 1.2e-05 13_[+1]_99 chr2R:17374645-17374765 1.2e-05 95_[+1]_17 chr3R:8161045-8161165 1.2e-05 18_[+1]_94 chr3L:11069927-11070047 1.2e-05 44_[+1]_68 chr2R:21292734-21292854 1.2e-05 27_[+1]_85 chr2L:9496556-9496676 2.4e-05 31_[+1]_81 chr3L:3566979-3567099 2.4e-05 30_[+1]_82 chr2L:12040781-12040901 2.4e-05 10_[+1]_102 chrX:19566118-19566238 2.4e-05 70_[+1]_42 chr3L:15563030-15563150 2.4e-05 39_[+1]_73 chr3R:31945833-31945953 2.4e-05 82_[+1]_30 chr2L:73134-73254 2.4e-05 29_[+1]_83 chrX:19353291-19353411 2.4e-05 24_[+1]_88 chr2R:20916749-20916869 2.4e-05 42_[+1]_70 chr3L:14622446-14622566 2.4e-05 45_[+1]_67 chr3R:24626828-24626948 2.4e-05 41_[+1]_71 chr2L:10849631-10849751 2.4e-05 30_[+1]_82 chrX:1200660-1200780 2.4e-05 13_[+1]_99 chr3R:29292410-29292530 2.4e-05 30_[+1]_82 chrX:18320080-18320200 2.4e-05 24_[+1]_88 chr3L:273696-273816 2.4e-05 42_[+1]_70 chr2R:18957164-18957284 2.4e-05 82_[+1]_30 chr3R:7541426-7541546 2.4e-05 39_[+1]_73 chr3L:10638622-10638742 2.4e-05 56_[+1]_56 chr3R:30237133-30237253 2.4e-05 52_[+1]_60 chr2R:16770052-16770172 2.4e-05 45_[+1]_67 chr3L:13452409-13452529 2.4e-05 52_[+1]_60 chr3R:16595117-16595237 2.4e-05 24_[+1]_88 chr2L:11970780-11970900 3.9e-05 34_[+1]_78 chr3L:20395689-20395809 3.9e-05 38_[+1]_74 chrX:13383894-13384014 3.9e-05 100_[+1]_12 chr3L:20185381-20185501 3.9e-05 69_[+1]_43 chr2R:20533034-20533154 3.9e-05 60_[+1]_52 chr3R:4962758-4962878 3.9e-05 26_[+1]_86 chr2L:10544040-10544160 3.9e-05 63_[+1]_49 chrX:12716266-12716386 3.9e-05 43_[+1]_69 chrX:2482593-2482713 3.9e-05 60_[+1]_52 chr3R:25447028-25447148 3.9e-05 61_[+1]_51 chr2R:25015809-25015929 3.9e-05 42_[+1]_70 chr3R:27547654-27547774 3.9e-05 51_[+1]_61 chr3R:19586458-19586578 3.9e-05 72_[+1]_40 chrX:2355842-2355962 5.4e-05 33_[+1]_79 chr2L:7033428-7033548 5.4e-05 47_[+1]_65 chr3R:21064492-21064612 5.4e-05 59_[+1]_53 chr2L:10082047-10082167 5.4e-05 55_[+1]_57 chr3L:21036253-21036373 5.4e-05 29_[+1]_83 chr3R:18585698-18585818 5.4e-05 31_[+1]_81 chrX:15817359-15817479 5.4e-05 61_[+1]_51 chr2L:20891225-20891345 5.4e-05 26_[+1]_86 chr3L:15318726-15318846 5.4e-05 74_[+1]_38 chr2R:5731770-5731890 5.4e-05 23_[+1]_89 chr2R:5776460-5776580 6.7e-05 43_[+1]_69 chr3L:6703556-6703676 6.7e-05 51_[+1]_61 chr3R:17708975-17709095 6.7e-05 64_[+1]_48 chr2R:11384482-11384602 6.7e-05 29_[+1]_83 chr2L:6475028-6475148 6.7e-05 76_[+1]_36 chr3R:11618123-11618243 6.7e-05 77_[+1]_35 chr2R:20316202-20316322 7.9e-05 68_[+1]_44 chr3R:14557997-14558117 7.9e-05 90_[+1]_22 chr3L:8074142-8074262 0.0001 49_[+1]_63 chr2R:14275458-14275578 0.0001 30_[+1]_82 chrX:17506417-17506537 0.0001 34_[+1]_78 chr2R:11099671-11099791 0.0001 41_[+1]_71 chr3L:11370522-11370642 0.00013 46_[+1]_66 chrX:11391194-11391314 0.00013 86_[+1]_26 chr3L:13450683-13450803 0.00013 109_[+1]_3 chr3L:21523596-21523716 0.00013 102_[+1]_10 chr2R:19368529-19368649 0.00013 5_[+1]_107 chr2L:15751109-15751229 0.00014 38_[+1]_74 chr2R:11198224-11198344 0.00016 35_[+1]_77 chr3L:18667892-18668012 0.00016 56_[+1]_56 chr3R:4605725-4605845 0.00016 10_[+1]_102 chr2R:18227969-18228089 0.00016 26_[+1]_86 chr3R:23760576-23760696 0.00017 55_[+1]_57 chr4:731608-731728 0.00017 22_[+1]_90 chrX:19496286-19496406 0.00022 59_[+1]_53 chr2R:18357667-18357787 0.00024 70_[+1]_42 chr2R:14219420-14219540 0.00024 22_[+1]_90 chr2L:16285054-16285174 0.00027 48_[+1]_64 chr3L:14624869-14624989 0.00027 23_[+1]_89 chr2L:1047645-1047765 0.00027 37_[+1]_75 chr3R:13041813-13041933 0.0003 32_[+1]_80 chrX:12742760-12742880 0.0003 48_[+1]_64 chrX:3297717-3297837 0.00031 50_[+1]_62 chr2L:11808034-11808154 0.00033 41_[+1]_71 chr3R:25880404-25880524 0.00035 20_[+1]_92 chrX:15071257-15071377 0.00038 63_[+1]_49 chrX:4240304-4240424 0.00038 45_[+1]_67 chr3L:10518144-10518264 0.00042 110_[+1]_2 chr3R:5287434-5287554 0.00042 110_[+1]_2 chrX:15577715-15577835 0.00042 49_[+1]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGTSGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACAGTSGC width=8 seqs=106 chr2R:17714448-17714568 ( 28) ACAGTGGC 1 chr3R:9014204-9014324 ( 66) ACAGTGGC 1 chr2R:10564174-10564294 ( 53) ACAGTGGC 1 chr2L:14022584-14022704 ( 43) ACAGTGGC 1 chr3L:12139221-12139341 ( 51) ACAGTGGC 1 chr3R:19880791-19880911 ( 48) ACAGTGGC 1 chr2R:8928063-8928183 ( 60) ACAGTGGC 1 chr2R:10438915-10439035 ( 85) ACAGTGGC 1 chr3R:5282869-5282989 ( 26) ACAGTGGC 1 chrX:8491912-8492032 ( 71) ACAGTGGC 1 chr2R:14907409-14907529 ( 33) ACAGTGGC 1 chr2R:25114457-25114577 ( 42) ACAGTGGC 1 chrX:278505-278625 ( 78) ACAGTGGC 1 chr2L:16263816-16263936 ( 50) ACAGTGGC 1 chrX:16458719-16458839 ( 75) ACAGTGGC 1 chr3L:9814973-9815093 ( 14) ACAGTGGC 1 chr2R:17374645-17374765 ( 96) ACAGTGGC 1 chr3R:8161045-8161165 ( 19) ACAGTGGC 1 chr3L:11069927-11070047 ( 45) ACAGTGGC 1 chr2R:21292734-21292854 ( 28) ACAGTGGC 1 chr2L:9496556-9496676 ( 32) ACAGTCGC 1 chr3L:3566979-3567099 ( 31) ACAGTCGC 1 chr2L:12040781-12040901 ( 11) ACAGTCGC 1 chrX:19566118-19566238 ( 71) ACAGTCGC 1 chr3L:15563030-15563150 ( 40) ACAGTCGC 1 chr3R:31945833-31945953 ( 83) ACAGTCGC 1 chr2L:73134-73254 ( 30) ACAGTCGC 1 chrX:19353291-19353411 ( 25) ACAGTCGC 1 chr2R:20916749-20916869 ( 43) ACAGTCGC 1 chr3L:14622446-14622566 ( 46) ACAGTCGC 1 chr3R:24626828-24626948 ( 42) ACAGTCGC 1 chr2L:10849631-10849751 ( 31) ACAGTCGC 1 chrX:1200660-1200780 ( 14) ACAGTCGC 1 chr3R:29292410-29292530 ( 31) ACAGTCGC 1 chrX:18320080-18320200 ( 25) ACAGTCGC 1 chr3L:273696-273816 ( 43) ACAGTCGC 1 chr2R:18957164-18957284 ( 83) ACAGTCGC 1 chr3R:7541426-7541546 ( 40) ACAGTCGC 1 chr3L:10638622-10638742 ( 57) ACAGTCGC 1 chr3R:30237133-30237253 ( 53) ACAGTCGC 1 chr2R:16770052-16770172 ( 46) ACAGTCGC 1 chr3L:13452409-13452529 ( 53) ACAGTCGC 1 chr3R:16595117-16595237 ( 25) ACAGTCGC 1 chr2L:11970780-11970900 ( 35) ACAGTGGT 1 chr3L:20395689-20395809 ( 39) ACAGTGGT 1 chrX:13383894-13384014 ( 101) ACAGTGGT 1 chr3L:20185381-20185501 ( 70) ACAGTGGT 1 chr2R:20533034-20533154 ( 61) ACAGTGGT 1 chr3R:4962758-4962878 ( 27) ACAGTGGT 1 chr2L:10544040-10544160 ( 64) ACAGTGGT 1 chrX:12716266-12716386 ( 44) ACAGTGGT 1 chrX:2482593-2482713 ( 61) ACAGTGGT 1 chr3R:25447028-25447148 ( 62) ACAGTGGT 1 chr2R:25015809-25015929 ( 43) ACAGTGGT 1 chr3R:27547654-27547774 ( 52) ACAGTGGT 1 chr3R:19586458-19586578 ( 73) ACAGTGGT 1 chrX:2355842-2355962 ( 34) ACAGTCGT 1 chr2L:7033428-7033548 ( 48) ACAGTCGT 1 chr3R:21064492-21064612 ( 60) ACAGTCGT 1 chr2L:10082047-10082167 ( 56) ACAGTCGT 1 chr3L:21036253-21036373 ( 30) ACAGTCGT 1 chr3R:18585698-18585818 ( 32) ACAGTCGT 1 chrX:15817359-15817479 ( 62) ACAGTCGT 1 chr2L:20891225-20891345 ( 27) ACAGTCGT 1 chr3L:15318726-15318846 ( 75) ACAGTCGT 1 chr2R:5731770-5731890 ( 24) ACAGTCGT 1 chr2R:5776460-5776580 ( 44) ACTGTGGC 1 chr3L:6703556-6703676 ( 52) ACTGTGGC 1 chr3R:17708975-17709095 ( 65) ACTGTGGC 1 chr2R:11384482-11384602 ( 30) ACTGTGGC 1 chr2L:6475028-6475148 ( 77) ACTGTGGC 1 chr3R:11618123-11618243 ( 78) ACTGTGGC 1 chr2R:20316202-20316322 ( 69) ACTGTCGC 1 chr3R:14557997-14558117 ( 91) ACTGTCGC 1 chr3L:8074142-8074262 ( 50) ACACTGGC 1 chr2R:14275458-14275578 ( 31) ACACTGGC 1 chrX:17506417-17506537 ( 35) ACACTGGC 1 chr2R:11099671-11099791 ( 42) ACAGTGGG 1 chr3L:11370522-11370642 ( 47) ACACTCGC 1 chrX:11391194-11391314 ( 87) ACACTCGC 1 chr3L:13450683-13450803 ( 110) ACAGTCGG 1 chr3L:21523596-21523716 ( 103) ACAGTCGG 1 chr2R:19368529-19368649 ( 6) ACACTCGC 1 chr2L:15751109-15751229 ( 39) ACAGTGGA 1 chr2R:11198224-11198344 ( 36) ACAGTCGA 1 chr3L:18667892-18668012 ( 57) ACAGTCGA 1 chr3R:4605725-4605845 ( 11) ACAGTCGA 1 chr2R:18227969-18228089 ( 27) ACAGTCGA 1 chr3R:23760576-23760696 ( 56) ACAGTAGC 1 chr4:731608-731728 ( 23) ACAGTAGC 1 chrX:19496286-19496406 ( 60) ACAGTGAC 1 chr2R:18357667-18357787 ( 71) ACAGTGCC 1 chr2R:14219420-14219540 ( 23) ACAGTCAC 1 chr2L:16285054-16285174 ( 49) ACACTGGT 1 chr3L:14624869-14624989 ( 24) ACAGTCCC 1 chr2L:1047645-1047765 ( 38) ACACTGGT 1 chr3R:13041813-13041933 ( 33) ACAATGGC 1 chrX:12742760-12742880 ( 49) ACAATGGC 1 chrX:3297717-3297837 ( 51) ACAATCGC 1 chr2L:11808034-11808154 ( 42) ACAGTAGT 1 chr3R:25880404-25880524 ( 21) ACAGTGAT 1 chrX:15071257-15071377 ( 64) ACAGTGCT 1 chrX:4240304-4240424 ( 46) ACAGTCAT 1 chr3L:10518144-10518264 ( 111) ACTGTGGG 1 chr3R:5287434-5287554 ( 111) ACTGTGGG 1 chrX:15577715-15577835 ( 50) ACTGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGTSGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.23513 E= 9.2e-079 187 -1337 -1337 -1337 -1337 216 -1337 -1337 171 -1337 -1337 -141 -327 -157 198 -1337 -1337 -1337 -1337 186 -327 102 119 -1337 -286 -298 204 -1337 -253 148 -201 -1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGTSGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 106 E= 9.2e-079 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.896226 0.000000 0.000000 0.103774 0.028302 0.075472 0.896226 0.000000 0.000000 0.000000 0.000000 1.000000 0.028302 0.452830 0.518868 0.000000 0.037736 0.028302 0.933962 0.000000 0.047170 0.622642 0.056604 0.273585 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGTSGC MEME-1 regular expression -------------------------------------------------------------------------------- ACAGT[GC]G[CT] -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF RCSACTGT MEME-2 width = 8 sites = 97 llr = 759 E-value = 1.1e-038 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCSACTGT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4::9:::: pos.-specific C :85:8::: probability G 5:4:2:a: matrix T :211:a:a bits 2.2 * 1.9 *** 1.7 *** 1.5 ***** Relative 1.3 * ***** Entropy 1.1 * ***** (11.3 bits) 0.9 * ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCACTGT consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCSACTGT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13383894-13384014 33 1.22e-05 GGCCACGGAC GCCACTGT GTGCGCGCGG chr2L:5045280-5045400 71 1.22e-05 TTTTTCGACC GCCACTGT GCGAAGTTTG chrX:3297717-3297837 30 1.22e-05 ATTTGTGACC GCCACTGT CACACTACAC chr3R:11235828-11235948 51 1.22e-05 AATGGTGGCC GCCACTGT CCGGTCTGCA chr2R:23656786-23656906 50 1.22e-05 TTTCCTGACC GCCACTGT GCGCATGAGG chr2L:7799552-7799672 66 1.22e-05 TTTTTACGCA GCCACTGT TTCTCACTTC chrX:2470182-2470302 63 1.22e-05 TCGGGAGGAG GCCACTGT ATTTTGATAT chr3R:17615318-17615438 16 1.22e-05 AGAAGAAGAA GCCACTGT GCTTAAAAAG chr3L:10518144-10518264 84 1.22e-05 CATTTGCGAC GCCACTGT TAACATAAAA chrX:16458719-16458839 5 1.22e-05 CGAC GCCACTGT GCGAAGTGTG chr2R:16765122-16765242 57 1.22e-05 tactctGGAG GCCACTGT ACACTAGATG chr3R:19094001-19094121 31 2.45e-05 TTTGTTAGAC GCGACTGT CCATTCAACA chr2L:12055867-12055987 77 2.45e-05 ACTGCGAACA GCGACTGT GCGTTGGCAT chr3R:21720059-21720179 98 2.45e-05 TATTTTAGAA GCGACTGT GATTTTGTTT chr2L:19159572-19159692 96 2.45e-05 CGCGTCGGCA GCGACTGt gttcatgggt chr3R:23965578-23965698 47 2.45e-05 tgctgctgct gcGACTGT TCGTTTTCGG chr2R:24534492-24534612 31 2.45e-05 GCAACTGGCC GCGACTGT AGCCCATGGC chr3R:24038919-24039039 59 2.45e-05 CCGCACCGAC GCGACTGT AATATTGAAA chrX:3556996-3557116 74 2.45e-05 TGTCAAAGAT GCGACTGT GCTAAGACAA chr2R:18227969-18228089 94 2.45e-05 ggatgtgact gcgactgt gactatgact chrX:18321473-18321593 55 2.45e-05 CGCACGGGAC GCGACTGT GACAGGGTGT chr2R:16431736-16431856 55 2.45e-05 ATTTCGGGAG GCGACTGT AGAAGGGGAA chrX:11391194-11391314 75 3.91e-05 ATTTTTGCCC ACCACTGT GCGCACACTC chr2L:19161330-19161450 70 3.91e-05 ATTTTCTACC ACCACTGT GCAGGACACA chr3R:8113411-8113531 65 3.91e-05 ATTTTTGGCC ACCACTGT GCCCTGGCTC chr2L:19162947-19163067 71 3.91e-05 TATTATGCCC ACCACTGT TGGCAGTGGG chr2L:14481297-14481417 90 3.91e-05 ACCCACTGCC ACCACTGT GCGGACATTT chr3R:13041813-13041933 74 3.91e-05 TATTTGAGCC ACCACTGT GCCCAAAACA chr2L:18708012-18708132 24 3.91e-05 TCTTGCAGCC ACCACTGT ATGCAAGACT chr4:834305-834425 59 3.91e-05 GAATGTTACC ACCACTGT GTAGCGATGT chr3R:17059099-17059219 59 3.91e-05 ACTCATGCCC ACCACTGT AGGTGAAGGC chr3L:10334769-10334889 93 3.91e-05 GCGGAGCACC ACCACTGT GCACCACCGT chr3R:8732931-8733051 53 3.91e-05 GCTAGCGGAC ACCACTGT GCTGCAATTC chr3R:11619078-11619198 64 3.91e-05 AACTAGAACC ACCACTGT GCAGTACTCA chr2R:19557940-19558060 60 3.91e-05 CCAGTGTGCC ACCACTGT GTGCCACCAC chr3L:11370522-11370642 31 5.39e-05 TAATGCGACC ACGACTGT ATCTACACAC chr2L:10082047-10082167 93 5.39e-05 AGCCATAGCC ACGACTGT AAGTGGAAAT chr3R:24628555-24628675 66 5.39e-05 CGTGAGTTCC ACGACTGT ACATCGTCTT chrX:16940498-16940618 68 5.39e-05 CTTCTTGGCC ACGACTGT GCGAAGAATT chr3L:21524233-21524353 76 5.39e-05 ATTTTAGTCA ACGACTGT GCGGCCATCA chr2L:7118774-7118894 50 5.39e-05 TATTTTGGCC ACGACTGT TTTTCGGCGG chr2R:14276790-14276910 49 5.39e-05 TCTTCGTGCC ACGACTGT GAACTGTGTC chr3R:12723900-12724020 74 6.88e-05 AATTTTAGGC GCTACTGT TAATGTAATA chr3L:20401165-20401285 76 6.88e-05 TGTTTTGACC GCTACTGT TATCCATGCT chrX:3967964-3968084 100 8.12e-05 CGATGGTGCC GCCAGTGT AGATGACCTT chrX:21373950-21374070 5 8.12e-05 CGAG GCCAGTGT TGCAAGACGC chr3L:13021930-13022050 80 8.12e-05 TTTTTGGGAC GCCAGTGT GCTCTTGTTT chr3R:19879915-19880035 61 8.12e-05 CTGGAGGACC GCCAGTGT GCGCTGGAGG chr3L:9003547-9003667 91 8.12e-05 AGTTTGTGCC GCCAGTGT CGCCCTGCCA chr3L:9815749-9815869 38 8.12e-05 TATTTTGGCA GCCAGTGT GCCAGATTGT chr2R:11223348-11223468 99 8.12e-05 TCCTTTGGAC GCCAGTGT GTTGCTCGTG chr3R:21640240-21640360 22 1.27e-04 CTGCAAAGCC ACTACTGT ACATCCCATA chrX:3694109-3694229 101 1.27e-04 TCTGCTGCCC ACTACTGT GCGAGCATCG chr3L:13450683-13450803 60 1.27e-04 CCCACTGGAC GCGAGTGT GTTTGCGAGT chrX:21055021-21055141 104 1.27e-04 ATATCGGGAC GTCACTGT GTGCGTGCG chr2R:8435000-8435120 57 1.27e-04 TATTTTGGAT GTCACTGT TTAATTTAAA chr2R:21468124-21468244 62 1.27e-04 GGTTTGTGCC ACTACTGT GCATGCCAAT chr2R:17374645-17374765 48 1.27e-04 GGTGGTGGCC ACTACTGT GGCGGCCATT chr3R:19594076-19594196 41 1.27e-04 ATTAATGGCA GTCACTGT CACCTTTTGT chr3L:10638622-10638742 97 1.27e-04 CGGTGTAGCC ACTACTGT ACTCCGTACA chr3L:19337699-19337819 65 1.57e-04 TCGTGGGGAC GTGACTGT AGCCCATTTG chr2R:5776460-5776580 71 1.57e-04 gactatggct gtgactgt ggccatgacC chr3L:22680993-22681113 66 1.57e-04 AATATTTGCT GTGACTGT GCCTCATCCC chrX:7252672-7252792 80 1.57e-04 TATTCCGGAC GTGACTGT CAAAAAAAAA chr2L:6475028-6475148 92 1.57e-04 ggccagtgcc gtgactgt gatgcttttg chr3R:5287434-5287554 51 1.90e-04 TTCAACTGAT ACGAGTGT ATGAAGCTGT chr3L:21349272-21349392 25 2.02e-04 TGCATGGGAC GCCTCTGT TGTTTGGTGC chrX:18320080-18320200 112 2.02e-04 TCACATAACT GCCTCTGT C chr3L:20185381-20185501 56 2.32e-04 AAAAAGGTCT ATGACTGT ATTGCCACAG chr2L:470038-470158 37 2.32e-04 TAATTTGACC CCCACTGT ATGGCTCTGT chr2L:12508118-12508238 68 2.32e-04 GTTCATCGCC ATGACTGT ACTCTAGTAC chrX:1308660-1308780 63 2.32e-04 TGCCGCAGAC CCCACTGT GTCCCAGTCT chrX:8412223-8412343 101 2.59e-04 ATTTTTGACC ACCTCTGT ATTTAGCCTT chr4:980250-980370 37 2.87e-04 ggatcaatag ccgactgt ccgtccgtcc chrX:19353291-19353411 103 2.87e-04 TTGAGTGGCG GCTAGTGT GTGTGTGTTT chrX:20723507-20723627 61 2.87e-04 AGGGTTGAAC CCGACTGT ATGTGGGGAA chrX:2146711-2146831 94 2.87e-04 AATCTTGACC GCTAGTGT GCCCCACAAA chr3R:24056609-24056729 65 2.99e-04 GAAGTAGGCC GGCACTGT GATGACAGCG chr3L:17379430-17379550 67 3.14e-04 AAGCGCGACC ACGTCTGT ACGAAGCGAC chr2L:18377349-18377469 109 3.14e-04 TTTTCCAGCC ACGTCTGT TGCT chr3L:22071786-22071906 55 3.14e-04 TGGGAAAACC ACGTCTGT GCGGAGGCTA chr3L:14671656-14671776 33 3.33e-04 CTTAAAAACC GTTACTGT TATATGGCGT chr2L:12001127-12001247 63 3.33e-04 TATTTAAGCC GTTACTGT TACACCACAC chrX:4240304-4240424 101 3.93e-04 ACTCACACAC ACTAGTGT GCACTCTTGT chr3R:5188051-5188171 69 3.93e-04 TATCGTGCCC ACTAGTGT TCGAACCTCG chrX:19496286-19496406 38 4.23e-04 CGGCGATTAC AGCACTGT TAGCTGCTAA chr3R:5282869-5282989 111 4.23e-04 TTTTTGGGCT AGCACTGT TT chr2L:12421970-12422090 102 4.23e-04 ATTTGGGGAC TCCACTGT GTACAGAATG chr4:731608-731728 71 4.23e-04 CAAGGAAACC AGCACTGT AAAAGAGAGC chr2L:13881486-13881606 21 4.61e-04 TCGGAATGCC ATTACTGT AGAGTGTTCT chr2R:16770052-16770172 27 4.61e-04 ACGCTTGTAT GTGAGTGT GGAACCTGGC chr3L:8074142-8074262 110 5.42e-04 AAACGGACGG ACAACTGT GTT chrX:18635441-18635561 91 5.42e-04 TAGAAGTACC ATCAGTGT AAATTTGCTA chr3R:24767579-24767699 64 5.42e-04 TATTTTAGCC ACAACTGT TAGCACTTGC chr3R:21863011-21863131 83 5.42e-04 TATTTCGCCC TCGACTGT CAAACATCCC chrX:9193410-9193530 20 5.54e-04 TTTCCAGTGC GCCTGTGT GCCGGATGCG chrX:13754494-13754614 64 6.46e-04 TCGGGTGCGT GCGTGTGT GCCGGTTGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCSACTGT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13383894-13384014 1.2e-05 32_[+2]_80 chr2L:5045280-5045400 1.2e-05 70_[+2]_42 chrX:3297717-3297837 1.2e-05 29_[+2]_83 chr3R:11235828-11235948 1.2e-05 50_[+2]_62 chr2R:23656786-23656906 1.2e-05 49_[+2]_63 chr2L:7799552-7799672 1.2e-05 65_[+2]_47 chrX:2470182-2470302 1.2e-05 62_[+2]_50 chr3R:17615318-17615438 1.2e-05 15_[+2]_97 chr3L:10518144-10518264 1.2e-05 83_[+2]_29 chrX:16458719-16458839 1.2e-05 4_[+2]_108 chr2R:16765122-16765242 1.2e-05 56_[+2]_56 chr3R:19094001-19094121 2.5e-05 30_[+2]_82 chr2L:12055867-12055987 2.5e-05 76_[+2]_36 chr3R:21720059-21720179 2.5e-05 97_[+2]_15 chr2L:19159572-19159692 2.5e-05 95_[+2]_17 chr3R:23965578-23965698 2.5e-05 46_[+2]_66 chr2R:24534492-24534612 2.5e-05 30_[+2]_82 chr3R:24038919-24039039 2.5e-05 58_[+2]_54 chrX:3556996-3557116 2.5e-05 73_[+2]_39 chr2R:18227969-18228089 2.5e-05 93_[+2]_19 chrX:18321473-18321593 2.5e-05 54_[+2]_58 chr2R:16431736-16431856 2.5e-05 54_[+2]_58 chrX:11391194-11391314 3.9e-05 74_[+2]_38 chr2L:19161330-19161450 3.9e-05 69_[+2]_43 chr3R:8113411-8113531 3.9e-05 64_[+2]_48 chr2L:19162947-19163067 3.9e-05 70_[+2]_42 chr2L:14481297-14481417 3.9e-05 89_[+2]_23 chr3R:13041813-13041933 3.9e-05 73_[+2]_39 chr2L:18708012-18708132 3.9e-05 23_[+2]_89 chr4:834305-834425 3.9e-05 58_[+2]_54 chr3R:17059099-17059219 3.9e-05 58_[+2]_54 chr3L:10334769-10334889 3.9e-05 92_[+2]_20 chr3R:8732931-8733051 3.9e-05 52_[+2]_60 chr3R:11619078-11619198 3.9e-05 63_[+2]_49 chr2R:19557940-19558060 3.9e-05 59_[+2]_53 chr3L:11370522-11370642 5.4e-05 30_[+2]_82 chr2L:10082047-10082167 5.4e-05 92_[+2]_20 chr3R:24628555-24628675 5.4e-05 65_[+2]_47 chrX:16940498-16940618 5.4e-05 67_[+2]_45 chr3L:21524233-21524353 5.4e-05 75_[+2]_37 chr2L:7118774-7118894 5.4e-05 49_[+2]_63 chr2R:14276790-14276910 5.4e-05 48_[+2]_64 chr3R:12723900-12724020 6.9e-05 73_[+2]_39 chr3L:20401165-20401285 6.9e-05 75_[+2]_37 chrX:3967964-3968084 8.1e-05 99_[+2]_13 chrX:21373950-21374070 8.1e-05 4_[+2]_108 chr3L:13021930-13022050 8.1e-05 79_[+2]_33 chr3R:19879915-19880035 8.1e-05 60_[+2]_52 chr3L:9003547-9003667 8.1e-05 90_[+2]_22 chr3L:9815749-9815869 8.1e-05 37_[+2]_75 chr2R:11223348-11223468 8.1e-05 98_[+2]_14 chr3R:21640240-21640360 0.00013 21_[+2]_91 chrX:3694109-3694229 0.00013 100_[+2]_12 chr3L:13450683-13450803 0.00013 59_[+2]_53 chrX:21055021-21055141 0.00013 103_[+2]_9 chr2R:8435000-8435120 0.00013 56_[+2]_56 chr2R:21468124-21468244 0.00013 61_[+2]_51 chr2R:17374645-17374765 0.00013 47_[+2]_65 chr3R:19594076-19594196 0.00013 40_[+2]_72 chr3L:10638622-10638742 0.00013 96_[+2]_16 chr3L:19337699-19337819 0.00016 64_[+2]_48 chr2R:5776460-5776580 0.00016 70_[+2]_42 chr3L:22680993-22681113 0.00016 65_[+2]_47 chrX:7252672-7252792 0.00016 79_[+2]_33 chr2L:6475028-6475148 0.00016 91_[+2]_21 chr3R:5287434-5287554 0.00019 50_[+2]_62 chr3L:21349272-21349392 0.0002 24_[+2]_88 chrX:18320080-18320200 0.0002 111_[+2]_1 chr3L:20185381-20185501 0.00023 55_[+2]_57 chr2L:470038-470158 0.00023 36_[+2]_76 chr2L:12508118-12508238 0.00023 67_[+2]_45 chrX:1308660-1308780 0.00023 62_[+2]_50 chrX:8412223-8412343 0.00026 100_[+2]_12 chr4:980250-980370 0.00029 36_[+2]_76 chrX:19353291-19353411 0.00029 102_[+2]_10 chrX:20723507-20723627 0.00029 60_[+2]_52 chrX:2146711-2146831 0.00029 93_[+2]_19 chr3R:24056609-24056729 0.0003 64_[+2]_48 chr3L:17379430-17379550 0.00031 66_[+2]_46 chr2L:18377349-18377469 0.00031 108_[+2]_4 chr3L:22071786-22071906 0.00031 54_[+2]_58 chr3L:14671656-14671776 0.00033 32_[+2]_80 chr2L:12001127-12001247 0.00033 62_[+2]_50 chrX:4240304-4240424 0.00039 100_[+2]_12 chr3R:5188051-5188171 0.00039 68_[+2]_44 chrX:19496286-19496406 0.00042 37_[+2]_75 chr3R:5282869-5282989 0.00042 110_[+2]_2 chr2L:12421970-12422090 0.00042 101_[+2]_11 chr4:731608-731728 0.00042 70_[+2]_42 chr2L:13881486-13881606 0.00046 20_[+2]_92 chr2R:16770052-16770172 0.00046 26_[+2]_86 chr3L:8074142-8074262 0.00054 109_[+2]_3 chrX:18635441-18635561 0.00054 90_[+2]_22 chr3R:24767579-24767699 0.00054 63_[+2]_49 chr3R:21863011-21863131 0.00054 82_[+2]_30 chrX:9193410-9193530 0.00055 19_[+2]_93 chrX:13754494-13754614 0.00065 63_[+2]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCSACTGT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCSACTGT width=8 seqs=97 chrX:13383894-13384014 ( 33) GCCACTGT 1 chr2L:5045280-5045400 ( 71) GCCACTGT 1 chrX:3297717-3297837 ( 30) GCCACTGT 1 chr3R:11235828-11235948 ( 51) GCCACTGT 1 chr2R:23656786-23656906 ( 50) GCCACTGT 1 chr2L:7799552-7799672 ( 66) GCCACTGT 1 chrX:2470182-2470302 ( 63) GCCACTGT 1 chr3R:17615318-17615438 ( 16) GCCACTGT 1 chr3L:10518144-10518264 ( 84) GCCACTGT 1 chrX:16458719-16458839 ( 5) GCCACTGT 1 chr2R:16765122-16765242 ( 57) GCCACTGT 1 chr3R:19094001-19094121 ( 31) GCGACTGT 1 chr2L:12055867-12055987 ( 77) GCGACTGT 1 chr3R:21720059-21720179 ( 98) GCGACTGT 1 chr2L:19159572-19159692 ( 96) GCGACTGT 1 chr3R:23965578-23965698 ( 47) GCGACTGT 1 chr2R:24534492-24534612 ( 31) GCGACTGT 1 chr3R:24038919-24039039 ( 59) GCGACTGT 1 chrX:3556996-3557116 ( 74) GCGACTGT 1 chr2R:18227969-18228089 ( 94) GCGACTGT 1 chrX:18321473-18321593 ( 55) GCGACTGT 1 chr2R:16431736-16431856 ( 55) GCGACTGT 1 chrX:11391194-11391314 ( 75) ACCACTGT 1 chr2L:19161330-19161450 ( 70) ACCACTGT 1 chr3R:8113411-8113531 ( 65) ACCACTGT 1 chr2L:19162947-19163067 ( 71) ACCACTGT 1 chr2L:14481297-14481417 ( 90) ACCACTGT 1 chr3R:13041813-13041933 ( 74) ACCACTGT 1 chr2L:18708012-18708132 ( 24) ACCACTGT 1 chr4:834305-834425 ( 59) ACCACTGT 1 chr3R:17059099-17059219 ( 59) ACCACTGT 1 chr3L:10334769-10334889 ( 93) ACCACTGT 1 chr3R:8732931-8733051 ( 53) ACCACTGT 1 chr3R:11619078-11619198 ( 64) ACCACTGT 1 chr2R:19557940-19558060 ( 60) ACCACTGT 1 chr3L:11370522-11370642 ( 31) ACGACTGT 1 chr2L:10082047-10082167 ( 93) ACGACTGT 1 chr3R:24628555-24628675 ( 66) ACGACTGT 1 chrX:16940498-16940618 ( 68) ACGACTGT 1 chr3L:21524233-21524353 ( 76) ACGACTGT 1 chr2L:7118774-7118894 ( 50) ACGACTGT 1 chr2R:14276790-14276910 ( 49) ACGACTGT 1 chr3R:12723900-12724020 ( 74) GCTACTGT 1 chr3L:20401165-20401285 ( 76) GCTACTGT 1 chrX:3967964-3968084 ( 100) GCCAGTGT 1 chrX:21373950-21374070 ( 5) GCCAGTGT 1 chr3L:13021930-13022050 ( 80) GCCAGTGT 1 chr3R:19879915-19880035 ( 61) GCCAGTGT 1 chr3L:9003547-9003667 ( 91) GCCAGTGT 1 chr3L:9815749-9815869 ( 38) GCCAGTGT 1 chr2R:11223348-11223468 ( 99) GCCAGTGT 1 chr3R:21640240-21640360 ( 22) ACTACTGT 1 chrX:3694109-3694229 ( 101) ACTACTGT 1 chr3L:13450683-13450803 ( 60) GCGAGTGT 1 chrX:21055021-21055141 ( 104) GTCACTGT 1 chr2R:8435000-8435120 ( 57) GTCACTGT 1 chr2R:21468124-21468244 ( 62) ACTACTGT 1 chr2R:17374645-17374765 ( 48) ACTACTGT 1 chr3R:19594076-19594196 ( 41) GTCACTGT 1 chr3L:10638622-10638742 ( 97) ACTACTGT 1 chr3L:19337699-19337819 ( 65) GTGACTGT 1 chr2R:5776460-5776580 ( 71) GTGACTGT 1 chr3L:22680993-22681113 ( 66) GTGACTGT 1 chrX:7252672-7252792 ( 80) GTGACTGT 1 chr2L:6475028-6475148 ( 92) GTGACTGT 1 chr3R:5287434-5287554 ( 51) ACGAGTGT 1 chr3L:21349272-21349392 ( 25) GCCTCTGT 1 chrX:18320080-18320200 ( 112) GCCTCTGT 1 chr3L:20185381-20185501 ( 56) ATGACTGT 1 chr2L:470038-470158 ( 37) CCCACTGT 1 chr2L:12508118-12508238 ( 68) ATGACTGT 1 chrX:1308660-1308780 ( 63) CCCACTGT 1 chrX:8412223-8412343 ( 101) ACCTCTGT 1 chr4:980250-980370 ( 37) CCGACTGT 1 chrX:19353291-19353411 ( 103) GCTAGTGT 1 chrX:20723507-20723627 ( 61) CCGACTGT 1 chrX:2146711-2146831 ( 94) GCTAGTGT 1 chr3R:24056609-24056729 ( 65) GGCACTGT 1 chr3L:17379430-17379550 ( 67) ACGTCTGT 1 chr2L:18377349-18377469 ( 109) ACGTCTGT 1 chr3L:22071786-22071906 ( 55) ACGTCTGT 1 chr3L:14671656-14671776 ( 33) GTTACTGT 1 chr2L:12001127-12001247 ( 63) GTTACTGT 1 chrX:4240304-4240424 ( 101) ACTAGTGT 1 chr3R:5188051-5188171 ( 69) ACTAGTGT 1 chrX:19496286-19496406 ( 38) AGCACTGT 1 chr3R:5282869-5282989 ( 111) AGCACTGT 1 chr2L:12421970-12422090 ( 102) TCCACTGT 1 chr4:731608-731728 ( 71) AGCACTGT 1 chr2L:13881486-13881606 ( 21) ATTACTGT 1 chr2R:16770052-16770172 ( 27) GTGAGTGT 1 chr3L:8074142-8074262 ( 110) ACAACTGT 1 chrX:18635441-18635561 ( 91) ATCAGTGT 1 chr3R:24767579-24767699 ( 64) ACAACTGT 1 chr3R:21863011-21863131 ( 83) TCGACTGT 1 chrX:9193410-9193530 ( 20) GCCTGTGT 1 chrX:13754494-13754614 ( 64) GCGTGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCSACTGT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.64076 E= 1.1e-038 63 -244 118 -374 -1324 185 -246 -83 -373 109 66 -93 175 -1324 -1324 -174 -1324 188 -38 -1324 -1324 -1324 -1324 186 -1324 -1324 214 -1324 -1324 -1324 -1324 186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCSACTGT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 97 E= 1.1e-038 0.422680 0.041237 0.515464 0.020619 0.000000 0.804124 0.041237 0.154639 0.020619 0.474227 0.360825 0.144330 0.917526 0.000000 0.000000 0.082474 0.000000 0.824742 0.175258 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCSACTGT MEME-2 regular expression -------------------------------------------------------------------------------- [GA]C[CG]ACTGT -------------------------------------------------------------------------------- Time 13.54 secs. ******************************************************************************** ******************************************************************************** MOTIF GTKTGTGT MEME-3 width = 8 sites = 35 llr = 296 E-value = 1.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTKTGTGT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::1::2 probability G 8:618:a: matrix T 2a491a:8 bits 2.2 * 1.9 * ** 1.7 * ** 1.5 ** ** Relative 1.3 ** ***** Entropy 1.1 ******** (12.2 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGTGT consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTKTGTGT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13383894-13384014 80 1.57e-05 GGACGCCACT GTGTGTGT TTATGTATGG chr2L:11808034-11808154 29 1.57e-05 GCGAATGTGT GTGTGTGT GTGCAACAGT chr3L:12139221-12139341 2 1.57e-05 C GTGTGTGT ATGTGCAAAC chr3R:17708975-17709095 73 1.57e-05 CCACTGTGGC GTGTGTGT ACACTGCACA chrX:19353291-19353411 111 1.57e-05 CGGCTAGTGT GTGTGTGT TT chr2L:19162947-19163067 90 1.57e-05 GGCAGTGGGT GTGTGTGT CATGGTAATT chr2L:18708224-18708344 83 1.57e-05 CAGTGCGTGC GTGTGTGT GCTTGTGTGG chr3R:19879915-19880035 18 1.57e-05 GATGGATGTG GTGTGTGT AATGGATACG chr3R:23965578-23965698 108 1.57e-05 GTGTGCCTAC GTGTGTGT CCGCG chr2R:18357667-18357787 111 3.47e-05 CGCTGTTGTT GTTTGTGT TA chr2L:7033428-7033548 13 3.47e-05 CTGTGTGTGG GTTTGTGT TGTTTATTTT chrX:21055021-21055141 12 3.47e-05 GCGAGTGTTT GTTTGTGT GTAAAGTGCA chr3R:19586458-19586578 57 3.47e-05 TGAGAATGAG GTTTGTGT ACTGGCTAAC chr2L:11970780-11970900 77 4.74e-05 GTGTGGTTCG GTGTGTGC GCGTCGCTGG chr3L:21523596-21523716 22 4.74e-05 GAGGAAAACA GTGTGTGC GTGTATGTAA chrX:18321473-18321593 69 4.74e-05 CTGTGACAGG GTGTGTGC CTGCGCTACT chr3L:17532285-17532405 7 8.18e-05 TGAATG TTGTGTGT CTACACTTTA chr3R:21739787-21739907 78 8.18e-05 CGCATTGGGG TTGTGTGT TGTTAGTGTG chr3R:21863213-21863333 64 8.18e-05 AGTAATTTCT TTGTGTGT CATCGCAGTT chr3R:24626828-24626948 9 8.18e-05 TTTGTCTG GTTTGTGC AACATCAGCG chr3L:9003547-9003667 82 8.18e-05 TCGCCTGTGA GTTTGTGC CGCCAGTGTC chr2R:21468124-21468244 53 8.18e-05 TGTACTTCCG GTTTGTGC CACTACTGTG chr3L:9814973-9815093 69 9.47e-05 TCGAAGATTT GTGGGTGT TTTGAACACA chr3R:19607711-19607831 83 9.47e-05 CACAGCTGGA GTGGGTGT GCGACGATGC chr2R:5776460-5776580 1 1.14e-04 . GTGTTTGT GAAAGACTAT chrX:2302579-2302699 34 1.37e-04 TTTTTAATGT TTTTGTGT TGCATTCGAA chr2L:1047645-1047765 65 1.37e-04 CTGGCTGACA TTTTGTGT AGCATACTTC chr3R:30237133-30237253 108 1.37e-04 TGGGTCTACA TTTTGTGT AGAAG chr2L:14589096-14589216 1 1.52e-04 . GTTGGTGT ATTGTCTACA chr3R:25445603-25445723 15 1.68e-04 ACAATTGGCT GTGTCTGT GTATTTTTGG chr2R:14276790-14276910 62 1.68e-04 ACTGTGAACT GTGTCTGT GCGTGCCTCT chrX:21373950-21374070 72 1.91e-04 GGAATGGTTC GTTTTTGT TGGACGCTGG chr2R:14275458-14275578 94 1.91e-04 TTATGCTATT GTTTTTGT TATTTGGCTC chrX:12742971-12743091 58 1.91e-04 GTTTAACTAA GTTTTTGT TTGTATTTCA chr3R:5781955-5782075 100 2.17e-04 GTCCAAAAGG GTGGGTGC CAGTTGGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTKTGTGT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13383894-13384014 1.6e-05 79_[+3]_33 chr2L:11808034-11808154 1.6e-05 28_[+3]_84 chr3L:12139221-12139341 1.6e-05 1_[+3]_111 chr3R:17708975-17709095 1.6e-05 72_[+3]_40 chrX:19353291-19353411 1.6e-05 110_[+3]_2 chr2L:19162947-19163067 1.6e-05 89_[+3]_23 chr2L:18708224-18708344 1.6e-05 82_[+3]_30 chr3R:19879915-19880035 1.6e-05 17_[+3]_95 chr3R:23965578-23965698 1.6e-05 107_[+3]_5 chr2R:18357667-18357787 3.5e-05 110_[+3]_2 chr2L:7033428-7033548 3.5e-05 12_[+3]_100 chrX:21055021-21055141 3.5e-05 11_[+3]_101 chr3R:19586458-19586578 3.5e-05 56_[+3]_56 chr2L:11970780-11970900 4.7e-05 76_[+3]_36 chr3L:21523596-21523716 4.7e-05 21_[+3]_91 chrX:18321473-18321593 4.7e-05 68_[+3]_44 chr3L:17532285-17532405 8.2e-05 6_[+3]_106 chr3R:21739787-21739907 8.2e-05 77_[+3]_35 chr3R:21863213-21863333 8.2e-05 63_[+3]_49 chr3R:24626828-24626948 8.2e-05 8_[+3]_104 chr3L:9003547-9003667 8.2e-05 81_[+3]_31 chr2R:21468124-21468244 8.2e-05 52_[+3]_60 chr3L:9814973-9815093 9.5e-05 68_[+3]_44 chr3R:19607711-19607831 9.5e-05 82_[+3]_30 chr2R:5776460-5776580 0.00011 [+3]_112 chrX:2302579-2302699 0.00014 33_[+3]_79 chr2L:1047645-1047765 0.00014 64_[+3]_48 chr3R:30237133-30237253 0.00014 107_[+3]_5 chr2L:14589096-14589216 0.00015 [+3]_112 chr3R:25445603-25445723 0.00017 14_[+3]_98 chr2R:14276790-14276910 0.00017 61_[+3]_51 chrX:21373950-21374070 0.00019 71_[+3]_41 chr2R:14275458-14275578 0.00019 93_[+3]_19 chrX:12742971-12743091 0.00019 57_[+3]_55 chr3R:5781955-5782075 0.00022 99_[+3]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTKTGTGT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTKTGTGT width=8 seqs=35 chrX:13383894-13384014 ( 80) GTGTGTGT 1 chr2L:11808034-11808154 ( 29) GTGTGTGT 1 chr3L:12139221-12139341 ( 2) GTGTGTGT 1 chr3R:17708975-17709095 ( 73) GTGTGTGT 1 chrX:19353291-19353411 ( 111) GTGTGTGT 1 chr2L:19162947-19163067 ( 90) GTGTGTGT 1 chr2L:18708224-18708344 ( 83) GTGTGTGT 1 chr3R:19879915-19880035 ( 18) GTGTGTGT 1 chr3R:23965578-23965698 ( 108) GTGTGTGT 1 chr2R:18357667-18357787 ( 111) GTTTGTGT 1 chr2L:7033428-7033548 ( 13) GTTTGTGT 1 chrX:21055021-21055141 ( 12) GTTTGTGT 1 chr3R:19586458-19586578 ( 57) GTTTGTGT 1 chr2L:11970780-11970900 ( 77) GTGTGTGC 1 chr3L:21523596-21523716 ( 22) GTGTGTGC 1 chrX:18321473-18321593 ( 69) GTGTGTGC 1 chr3L:17532285-17532405 ( 7) TTGTGTGT 1 chr3R:21739787-21739907 ( 78) TTGTGTGT 1 chr3R:21863213-21863333 ( 64) TTGTGTGT 1 chr3R:24626828-24626948 ( 9) GTTTGTGC 1 chr3L:9003547-9003667 ( 82) GTTTGTGC 1 chr2R:21468124-21468244 ( 53) GTTTGTGC 1 chr3L:9814973-9815093 ( 69) GTGGGTGT 1 chr3R:19607711-19607831 ( 83) GTGGGTGT 1 chr2R:5776460-5776580 ( 1) GTGTTTGT 1 chrX:2302579-2302699 ( 34) TTTTGTGT 1 chr2L:1047645-1047765 ( 65) TTTTGTGT 1 chr3R:30237133-30237253 ( 108) TTTTGTGT 1 chr2L:14589096-14589216 ( 1) GTTGGTGT 1 chr3R:25445603-25445723 ( 15) GTGTCTGT 1 chr2R:14276790-14276910 ( 62) GTGTCTGT 1 chrX:21373950-21374070 ( 72) GTTTTTGT 1 chr2R:14275458-14275578 ( 94) GTTTTTGT 1 chrX:12742971-12743091 ( 58) GTTTTTGT 1 chr3R:5781955-5782075 ( 100) GTGGGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTKTGTGT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0411 E= 1.5e+003 -1177 -1177 186 -68 -1177 -1177 -1177 186 -1177 -1177 140 54 -1177 -1177 -99 168 -1177 -197 186 -127 -1177 -1177 -1177 186 -1177 -1177 213 -1177 -1177 -16 -1177 154 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTKTGTGT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 1.5e+003 0.000000 0.000000 0.828571 0.171429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.114286 0.885714 0.000000 0.057143 0.828571 0.114286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.800000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTKTGTGT MEME-3 regular expression -------------------------------------------------------------------------------- GT[GT]TGTG[TC] -------------------------------------------------------------------------------- Time 19.44 secs. ******************************************************************************** ******************************************************************************** MOTIF AAATATTK MEME-4 width = 8 sites = 41 llr = 337 E-value = 4.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAATATTK MEME-4 Description -------------------------------------------------------------------------------- Simplified A 6aa:a::1 pos.-specific C 2::::::1 probability G 1::::::3 matrix T 1::a:aa5 bits 2.2 1.9 ****** 1.7 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.1 ****** (11.9 bits) 0.9 ****** 0.6 ****** 0.4 ******* 0.2 ******** 0.0 -------- Multilevel AAATATTT consensus C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTK MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:20395689-20395809 110 3.22e-05 GCAAAGTCGC AAATATTT CCG chr2L:7033428-7033548 85 3.22e-05 GTGGGGTGCA AAATATTT GGCAGGGCTG chr3L:14671656-14671776 64 3.22e-05 CAGAATTGAA AAATATTT ATGTATGATA chr3R:23760576-23760696 104 3.22e-05 AAGCCCAGTA AAATATTT TGAACTCAA chr3R:17615318-17615438 92 3.22e-05 AATAGAAATG AAATATTT AAACGACGGC chr3L:15318726-15318846 103 3.22e-05 ATAGTCATCA AAATATTT TAAAATATTT chr3R:21863011-21863131 70 3.22e-05 TCAGCTGCCC AAATATTT CGCCCTCGAC chr3L:17532285-17532405 50 5.89e-05 ACAGAGAGAA AAATATTG TTTTAACTTT chr3L:3566979-3567099 44 5.89e-05 GTCGCTGCGA AAATATTG CCCCCACCAT chr2L:470038-470158 84 5.89e-05 GGCCACGACA AAATATTG ATTGAAAATC chr3R:25387547-25387667 81 5.89e-05 GTGCAGGTCA AAATATTG GGGTGATATG chr2R:11384482-11384602 81 5.89e-05 TGGAGGTCGT AAATATTG GCATGCTTTC chr2R:16764326-16764446 52 5.89e-05 TAGCGTCCTG AAATATTG TGAAACCAAG chr3R:19610800-19610920 71 5.89e-05 CTCTCGTCCG AAATATTG AACACAGCTG chr3R:19607711-19607831 63 5.89e-05 ACCCGGTCCG AAATATTG AACACAGCTG chr2R:25015809-25015929 57 5.89e-05 TGGTGGTCCG AAATATTG AGTAATTTCC chr3R:19586458-19586578 87 5.89e-05 TGGTTGGCTG AAATATTG GTCACGCCTA chr3R:13041813-13041933 61 8.53e-05 CGATTAGCTT CAATATTT GAGCCACCAC chr3L:22680993-22681113 55 8.53e-05 CAATGTTGTT CAATATTT GCTGTGACTG chr2R:8435000-8435120 44 8.53e-05 TGTTGTATCT CAATATTT TGGATGTCAC chrX:3556996-3557116 89 8.53e-05 TGTGCTAAGA CAATATTT GCCTGCGCCA chr2L:12421970-12422090 88 8.53e-05 CAACTGGGTA CAATATTT GGGGACTCCA chr3R:25721169-25721289 36 8.53e-05 AGTCCGTGCC CAATATTT ACGGCTGGCA chr2R:14276790-14276910 84 8.53e-05 GCCTCTCTCG CAATATTT GCGTGTGCGT chr3R:6791459-6791579 32 1.07e-04 TGAACTAGTT CAATATTG TATGCCTTGA chrX:5312027-5312147 32 1.65e-04 CACTCGAGGA AAATATTA GTACTATGTC chr2R:20316202-20316322 26 1.65e-04 TCATTTATTG AAATATTA CTAGTTGTTA chr3R:5595058-5595178 101 1.65e-04 TAAACGTACA AAATATTC GAAGTTGCAG chrX:16458719-16458839 88 1.65e-04 GTGGCGGTGC AAATATTC GGCAAACTTC chr2R:18766331-18766451 23 1.65e-04 TGTTGCCCGC AAATATTA GGAATTAAAG chr2L:21078004-21078124 66 1.65e-04 CGACCTGTTC AAATATTA TGTTGCCTAC chr2L:15053128-15053248 101 1.65e-04 TGCCCCATTC AAATATTC CCAGCCACCA chr3R:7936714-7936834 47 1.98e-04 CACTTCGTAT TAATATTT TTGCCGCTGG chr2L:12422189-12422309 87 1.98e-04 CATTTGCTAC TAATATTT TAAAATTTCG chrX:12716466-12716586 112 1.98e-04 AAAGCTGCTT TAATATTT T chr2L:12001127-12001247 50 1.98e-04 ATTAATGTAC TAATATTT AAGCCGTTAC chr2L:12040781-12040901 92 2.25e-04 TCTAGTCATT GAATATTT CTCATTAACA chrX:8412223-8412343 6 2.25e-04 TCAAT GAATATTT CTCATTTTCA chr2L:19162947-19163067 58 2.99e-04 ACGCACCGCA CAATATTA TGCCCACCAC chrX:7252672-7252792 67 2.99e-04 GGATAGGGAA CAATATTC CGGACGTGAC chr2L:10180519-10180639 53 3.21e-04 GGCGCGTCCG GAATATTG GGCAAGCTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTK MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:20395689-20395809 3.2e-05 109_[+4]_3 chr2L:7033428-7033548 3.2e-05 84_[+4]_28 chr3L:14671656-14671776 3.2e-05 63_[+4]_49 chr3R:23760576-23760696 3.2e-05 103_[+4]_9 chr3R:17615318-17615438 3.2e-05 91_[+4]_21 chr3L:15318726-15318846 3.2e-05 102_[+4]_10 chr3R:21863011-21863131 3.2e-05 69_[+4]_43 chr3L:17532285-17532405 5.9e-05 49_[+4]_63 chr3L:3566979-3567099 5.9e-05 43_[+4]_69 chr2L:470038-470158 5.9e-05 83_[+4]_29 chr3R:25387547-25387667 5.9e-05 80_[+4]_32 chr2R:11384482-11384602 5.9e-05 80_[+4]_32 chr2R:16764326-16764446 5.9e-05 51_[+4]_61 chr3R:19610800-19610920 5.9e-05 70_[+4]_42 chr3R:19607711-19607831 5.9e-05 62_[+4]_50 chr2R:25015809-25015929 5.9e-05 56_[+4]_56 chr3R:19586458-19586578 5.9e-05 86_[+4]_26 chr3R:13041813-13041933 8.5e-05 60_[+4]_52 chr3L:22680993-22681113 8.5e-05 54_[+4]_58 chr2R:8435000-8435120 8.5e-05 43_[+4]_69 chrX:3556996-3557116 8.5e-05 88_[+4]_24 chr2L:12421970-12422090 8.5e-05 87_[+4]_25 chr3R:25721169-25721289 8.5e-05 35_[+4]_77 chr2R:14276790-14276910 8.5e-05 83_[+4]_29 chr3R:6791459-6791579 0.00011 31_[+4]_81 chrX:5312027-5312147 0.00017 31_[+4]_81 chr2R:20316202-20316322 0.00017 25_[+4]_87 chr3R:5595058-5595178 0.00017 100_[+4]_12 chrX:16458719-16458839 0.00017 87_[+4]_25 chr2R:18766331-18766451 0.00017 22_[+4]_90 chr2L:21078004-21078124 0.00017 65_[+4]_47 chr2L:15053128-15053248 0.00017 100_[+4]_12 chr3R:7936714-7936834 0.0002 46_[+4]_66 chr2L:12422189-12422309 0.0002 86_[+4]_26 chrX:12716466-12716586 0.0002 111_[+4]_1 chr2L:12001127-12001247 0.0002 49_[+4]_63 chr2L:12040781-12040901 0.00022 91_[+4]_21 chrX:8412223-8412343 0.00022 5_[+4]_107 chr2L:19162947-19163067 0.0003 57_[+4]_55 chrX:7252672-7252792 0.0003 66_[+4]_46 chr2L:10180519-10180639 0.00032 52_[+4]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTK MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAATATTK width=8 seqs=41 chr3L:20395689-20395809 ( 110) AAATATTT 1 chr2L:7033428-7033548 ( 85) AAATATTT 1 chr3L:14671656-14671776 ( 64) AAATATTT 1 chr3R:23760576-23760696 ( 104) AAATATTT 1 chr3R:17615318-17615438 ( 92) AAATATTT 1 chr3L:15318726-15318846 ( 103) AAATATTT 1 chr3R:21863011-21863131 ( 70) AAATATTT 1 chr3L:17532285-17532405 ( 50) AAATATTG 1 chr3L:3566979-3567099 ( 44) AAATATTG 1 chr2L:470038-470158 ( 84) AAATATTG 1 chr3R:25387547-25387667 ( 81) AAATATTG 1 chr2R:11384482-11384602 ( 81) AAATATTG 1 chr2R:16764326-16764446 ( 52) AAATATTG 1 chr3R:19610800-19610920 ( 71) AAATATTG 1 chr3R:19607711-19607831 ( 63) AAATATTG 1 chr2R:25015809-25015929 ( 57) AAATATTG 1 chr3R:19586458-19586578 ( 87) AAATATTG 1 chr3R:13041813-13041933 ( 61) CAATATTT 1 chr3L:22680993-22681113 ( 55) CAATATTT 1 chr2R:8435000-8435120 ( 44) CAATATTT 1 chrX:3556996-3557116 ( 89) CAATATTT 1 chr2L:12421970-12422090 ( 88) CAATATTT 1 chr3R:25721169-25721289 ( 36) CAATATTT 1 chr2R:14276790-14276910 ( 84) CAATATTT 1 chr3R:6791459-6791579 ( 32) CAATATTG 1 chrX:5312027-5312147 ( 32) AAATATTA 1 chr2R:20316202-20316322 ( 26) AAATATTA 1 chr3R:5595058-5595178 ( 101) AAATATTC 1 chrX:16458719-16458839 ( 88) AAATATTC 1 chr2R:18766331-18766451 ( 23) AAATATTA 1 chr2L:21078004-21078124 ( 66) AAATATTA 1 chr2L:15053128-15053248 ( 101) AAATATTC 1 chr3R:7936714-7936834 ( 47) TAATATTT 1 chr2L:12422189-12422309 ( 87) TAATATTT 1 chrX:12716466-12716586 ( 112) TAATATTT 1 chr2L:12001127-12001247 ( 50) TAATATTT 1 chr2L:12040781-12040901 ( 92) GAATATTT 1 chrX:8412223-8412343 ( 6) GAATATTT 1 chr2L:19162947-19163067 ( 58) CAATATTA 1 chrX:7252672-7252792 ( 67) CAATATTC 1 chr2L:10180519-10180639 ( 53) GAATATTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTK MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3926 E= 4.8e+001 110 13 -164 -150 187 -1200 -1200 -1200 187 -1200 -1200 -1200 -1200 -1200 -1200 186 187 -1200 -1200 -1200 -1200 -1200 -1200 186 -1200 -1200 -1200 186 -116 -120 36 82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTK MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 4.8e+001 0.585366 0.243902 0.073171 0.097561 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.121951 0.097561 0.292683 0.487805 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATATTK MEME-4 regular expression -------------------------------------------------------------------------------- [AC]AATATT[TG] -------------------------------------------------------------------------------- Time 25.28 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCCGCAC MEME-5 width = 8 sites = 4 llr = 47 E-value = 7.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCCGCAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::a: pos.-specific C :aaa:a:a probability G a:::a::: matrix T :::::::: bits 2.2 ****** * 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.0 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCCGCAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCGCAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14557997-14558117 14 8.00e-06 AAACGGCCTT GCCCGCAC GAGCTACGCA chr2L:5045280-5045400 44 8.00e-06 AAATCCGCCT GCCCGCAC CATTCCGCTT chrX:1308660-1308780 94 8.00e-06 TCGCACTCCC GCCCGCAC ACCGCTCGCC chr3R:24038919-24039039 47 8.00e-06 GTGATATACC GCCCGCAC CGACGCGACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCGCAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14557997-14558117 8e-06 13_[+5]_99 chr2L:5045280-5045400 8e-06 43_[+5]_69 chrX:1308660-1308780 8e-06 93_[+5]_19 chr3R:24038919-24039039 8e-06 46_[+5]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCGCAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCCGCAC width=8 seqs=4 chr3R:14557997-14558117 ( 14) GCCCGCAC 1 chr2L:5045280-5045400 ( 44) GCCCGCAC 1 chrX:1308660-1308780 ( 94) GCCCGCAC 1 chr3R:24038919-24039039 ( 47) GCCCGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCGCAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 7.0e+004 -865 -865 213 -865 -865 216 -865 -865 -865 216 -865 -865 -865 216 -865 -865 -865 -865 213 -865 -865 216 -865 -865 187 -865 -865 -865 -865 216 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCGCAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 7.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCGCAC MEME-5 regular expression -------------------------------------------------------------------------------- GCCCGCAC -------------------------------------------------------------------------------- Time 31.04 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16595117-16595237 1.05e-01 24_[+1(2.43e-05)]_16_[+1(2.43e-05)]_\ 4_[+1(2.43e-05)]_4_[+1(2.43e-05)]_4_[+1(2.43e-05)]_28 chr3R:19586458-19586578 1.01e-04 56_[+3(3.47e-05)]_8_[+1(3.93e-05)]_\ 6_[+4(5.89e-05)]_26 chr3L:13452409-13452529 6.94e-02 52_[+1(2.43e-05)]_60 chr2R:16765122-16765242 3.06e-02 56_[+2(1.22e-05)]_56 chr2R:19557940-19558060 2.24e-02 59_[+2(3.91e-05)]_5_[+2(3.91e-05)]_\ 40 chr4:731608-731728 4.90e-02 120 chr2R:16770052-16770172 1.21e-02 45_[+1(2.43e-05)]_67 chr2R:14276790-14276910 5.50e-04 48_[+2(5.39e-05)]_27_[+4(8.53e-05)]_\ 29 chr3R:5188051-5188171 2.91e-01 120 chr3R:30237133-30237253 1.51e-03 52_[+1(2.43e-05)]_60 chr2R:21292734-21292854 4.19e-02 27_[+1(1.22e-05)]_85 chr3R:27547654-27547774 2.34e-01 51_[+1(3.93e-05)]_61 chr3R:11618123-11618243 2.05e-03 74_[+2(3.91e-05)]_38 chr3L:11069927-11070047 9.07e-03 44_[+1(1.22e-05)]_68 chr2L:15053128-15053248 1.69e-01 120 chr3L:10638622-10638742 5.61e-03 56_[+1(2.43e-05)]_56 chr3R:7541426-7541546 2.00e-02 39_[+1(2.43e-05)]_73 chrX:4240304-4240424 3.93e-02 120 chr3R:8161045-8161165 4.55e-02 18_[+1(1.22e-05)]_94 chr2R:11223348-11223468 4.62e-02 98_[+2(8.12e-05)]_14 chr2L:6475028-6475148 1.72e-04 58_[+5(2.93e-05)]_10_[+1(6.65e-05)]_\ 36 chr2R:18766123-18766243 3.74e-01 120 chrX:12742760-12742880 2.64e-01 120 chr2R:18957164-18957284 9.24e-02 82_[+1(2.43e-05)]_30 chr2L:21078004-21078124 4.19e-02 120 chrX:2146711-2146831 1.79e-01 120 chrX:20723507-20723627 3.76e-01 120 chr2R:19341519-19341639 7.84e-01 120 chr2R:25015809-25015929 5.39e-03 42_[+1(3.93e-05)]_6_[+4(5.89e-05)]_\ 56 chr3R:25721169-25721289 5.57e-02 35_[+4(8.53e-05)]_77 chr3R:25447028-25447148 1.02e-01 61_[+1(3.93e-05)]_51 chr2L:7118774-7118894 9.81e-02 49_[+2(5.39e-05)]_63 chr3R:6206488-6206608 4.06e-01 120 chrX:15577715-15577835 2.71e-02 46_[+2(5.39e-05)]_66 chr3R:11619078-11619198 1.89e-02 63_[+2(3.91e-05)]_49 chrX:17774700-17774820 4.22e-01 120 chr3R:19607711-19607831 9.50e-03 62_[+4(5.89e-05)]_12_[+3(9.47e-05)]_\ 30 chr3R:19594076-19594196 2.57e-02 120 chr2R:7889417-7889537 4.11e-01 120 chr2R:16431736-16431856 3.31e-02 54_[+2(2.45e-05)]_58 chr2R:6666016-6666136 7.98e-01 120 chr3R:19610800-19610920 4.74e-02 70_[+4(5.89e-05)]_42 chrX:7252672-7252792 2.19e-02 120 chr2R:17374645-17374765 1.98e-03 50_[+1(6.65e-05)]_37_[+1(1.22e-05)]_\ 17 chr2L:10180519-10180639 3.00e-01 120 chr2R:19368529-19368649 2.75e-01 120 chr3L:9814973-9815093 4.91e-03 13_[+1(1.22e-05)]_47_[+3(9.47e-05)]_\ 44 chr2R:18766331-18766451 1.07e-02 120 chrX:16458719-16458839 1.35e-05 4_[+2(1.22e-05)]_62_[+1(1.22e-05)]_\ 38 chr3L:20401165-20401285 5.71e-02 75_[+2(6.88e-05)]_37 chr3R:5287434-5287554 2.45e-02 107_[+2(2.45e-05)]_5 chr2R:11099671-11099791 9.08e-02 120 chrX:2482593-2482713 1.27e-02 60_[+1(3.93e-05)]_52 chr2L:12001127-12001247 6.80e-02 120 chr3R:25754008-25754128 6.84e-01 120 chr3L:273696-273816 3.73e-02 42_[+1(2.43e-05)]_70 chrX:18321473-18321593 2.84e-04 54_[+2(2.45e-05)]_6_[+3(4.74e-05)]_\ 44 chr3R:21863011-21863131 4.04e-03 69_[+4(3.22e-05)]_43 chr2R:16764326-16764446 4.66e-02 51_[+4(5.89e-05)]_61 chr2L:1047645-1047765 2.46e-02 120 chr2R:5731770-5731890 5.34e-02 23_[+1(5.41e-05)]_89 chr2R:11384482-11384602 1.28e-03 29_[+1(6.65e-05)]_43_[+4(5.89e-05)]_\ 32 chr2R:21468124-21468244 6.08e-03 52_[+3(8.18e-05)]_60 chr3L:21524233-21524353 5.78e-02 75_[+2(5.39e-05)]_37 chr2L:16263816-16263936 7.32e-02 49_[+1(1.22e-05)]_63 chr3L:10518144-10518264 6.52e-03 83_[+2(1.22e-05)]_29 chr2R:18227969-18228089 7.26e-03 93_[+2(2.45e-05)]_19 chrX:16940498-16940618 8.43e-02 67_[+2(5.39e-05)]_45 chr3L:21523596-21523716 1.83e-02 21_[+3(4.74e-05)]_91 chr3L:16884195-16884315 6.06e-02 120 chr3L:15318726-15318846 1.07e-03 74_[+1(5.41e-05)]_20_[+4(3.22e-05)]_\ 2_[+4(3.22e-05)] chr3R:25387547-25387667 1.24e-01 80_[+4(5.89e-05)]_32 chr2L:12421970-12422090 1.48e-02 87_[+4(8.53e-05)]_25 chr3R:5595058-5595178 8.03e-02 120 chrX:278505-278625 4.92e-03 77_[+1(1.22e-05)]_35 chrX:12716466-12716586 1.65e-01 120 chrX:12716266-12716386 9.06e-03 43_[+1(3.93e-05)]_69 chrX:3556996-3557116 5.15e-04 58_[+2(2.45e-05)]_7_[+2(2.45e-05)]_\ 7_[+4(8.53e-05)]_24 chrX:2470386-2470506 7.68e-01 120 chr2L:20891225-20891345 5.29e-02 26_[+1(5.41e-05)]_86 chr3R:24038919-24039039 7.24e-05 46_[+5(8.00e-06)]_4_[+2(2.45e-05)]_\ 54 chr2L:12422189-12422309 3.60e-01 120 chr2R:24534492-24534612 2.36e-02 30_[+2(2.45e-05)]_82 chr3L:9815749-9815869 9.65e-02 37_[+2(8.12e-05)]_75 chr2R:8435000-8435120 4.30e-03 43_[+4(8.53e-05)]_69 chrX:9193410-9193530 2.79e-01 120 chrX:17506417-17506537 3.36e-01 120 chr2L:10544040-10544160 1.82e-01 63_[+1(3.93e-05)]_49 chr2R:25114457-25114577 1.17e-02 41_[+1(1.22e-05)]_71 chrX:1308660-1308780 3.58e-03 93_[+5(8.00e-06)]_19 chrX:18320080-18320200 1.52e-02 24_[+1(2.43e-05)]_88 chr3R:29292410-29292530 1.47e-02 30_[+1(2.43e-05)]_82 chrX:15817359-15817479 1.59e-01 61_[+1(5.41e-05)]_51 chr3L:9003547-9003667 1.68e-02 81_[+3(8.18e-05)]_1_[+2(8.12e-05)]_\ 22 chr3R:10368331-10368451 7.76e-01 120 chrX:12742971-12743091 4.61e-01 120 chr3R:8732931-8733051 5.10e-02 52_[+2(3.91e-05)]_60 chr3R:17615318-17615438 1.23e-03 15_[+2(1.22e-05)]_68_[+4(3.22e-05)]_\ 21 chr3R:23965578-23965698 1.43e-04 46_[+2(2.45e-05)]_53_[+3(1.57e-05)]_\ 5 chr2R:14907409-14907529 6.39e-02 32_[+1(1.22e-05)]_80 chr3R:24628555-24628675 1.30e-01 65_[+2(5.39e-05)]_47 chr3R:12723900-12724020 5.35e-02 73_[+2(6.88e-05)]_39 chr3L:22680993-22681113 7.51e-04 54_[+4(8.53e-05)]_58 chrX:1200660-1200780 1.48e-01 13_[+1(2.43e-05)]_99 chr3L:10334769-10334889 3.00e-02 92_[+2(3.91e-05)]_20 chr2L:23512817-23512937 1.00e+00 120 chr2R:8957162-8957282 8.42e-01 120 chrX:2470182-2470302 7.36e-02 62_[+2(1.22e-05)]_50 chr3R:17059099-17059219 1.92e-02 58_[+2(3.91e-05)]_54 chr3R:19879915-19880035 5.62e-03 17_[+3(1.57e-05)]_35_[+2(8.12e-05)]_\ 52 chr3R:4962758-4962878 3.53e-02 26_[+1(3.93e-05)]_86 chr4:834305-834425 3.12e-03 35_[+5(2.93e-05)]_15_[+2(3.91e-05)]_\ 54 chr3R:4605725-4605845 3.25e-01 120 chr2L:10849631-10849751 4.11e-02 30_[+1(2.43e-05)]_82 chr2L:18708224-18708344 2.45e-02 82_[+3(1.57e-05)]_30 chr2L:18708012-18708132 3.20e-02 23_[+2(3.91e-05)]_89 chr2L:7799552-7799672 2.02e-02 65_[+2(1.22e-05)]_47 chr2R:14275458-14275578 2.60e-02 120 chrX:8412223-8412343 4.41e-02 120 chr2R:23656786-23656906 6.60e-03 49_[+2(1.22e-05)]_63 chrX:8491912-8492032 3.74e-03 70_[+1(1.22e-05)]_42 chr2R:14219420-14219540 1.27e-01 120 chr3L:22071786-22071906 3.17e-01 120 chr3R:24056609-24056729 8.54e-03 120 chr3R:24626828-24626948 2.41e-03 8_[+3(8.18e-05)]_25_[+1(2.43e-05)]_\ 71 chr3R:5282869-5282989 4.18e-03 25_[+1(1.22e-05)]_87 chr3R:19880990-19881110 7.82e-01 120 chr3R:13041813-13041933 7.13e-04 60_[+4(8.53e-05)]_5_[+2(3.91e-05)]_\ 39 chr3R:18585698-18585818 1.53e-01 31_[+1(5.41e-05)]_81 chr3R:11235828-11235948 2.68e-02 50_[+2(1.22e-05)]_62 chr3L:14622446-14622566 3.44e-02 45_[+1(2.43e-05)]_67 chr3L:21036253-21036373 1.41e-01 29_[+1(5.41e-05)]_83 chr2R:16766135-16766255 5.27e-01 120 chr3R:21064691-21064811 8.41e-01 120 chr2L:14481297-14481417 2.87e-02 89_[+2(3.91e-05)]_23 chr3L:14624869-14624989 1.44e-01 120 chr2R:20916749-20916869 7.01e-02 42_[+1(2.43e-05)]_70 chr2L:10082047-10082167 4.88e-03 55_[+1(5.41e-05)]_29_[+2(5.39e-05)]_\ 20 chrX:13878991-13879111 8.48e-01 120 chrX:21055021-21055141 1.97e-02 11_[+3(3.47e-05)]_101 chr2L:19162947-19163067 1.36e-04 70_[+2(3.91e-05)]_9_[+3(1.57e-05)]_\ 25 chr2L:19159572-19159692 8.41e-02 95_[+2(2.45e-05)]_17 chr3R:24767579-24767699 4.71e-01 120 chr2L:12508118-12508238 2.62e-01 120 chr2R:10438915-10439035 3.18e-02 84_[+1(1.22e-05)]_28 chr3R:21064492-21064612 6.96e-02 59_[+1(5.41e-05)]_53 chrX:19353291-19353411 4.67e-04 24_[+1(2.43e-05)]_74_[+3(1.57e-05)]_\ 6 chr3L:13021930-13022050 6.99e-02 79_[+2(8.12e-05)]_33 chr3R:23760576-23760696 1.88e-02 103_[+4(3.22e-05)]_9 chr3R:21863213-21863333 1.50e-01 63_[+3(8.18e-05)]_49 chr2L:7425798-7425918 5.80e-01 120 chr3L:14671656-14671776 2.51e-02 63_[+4(3.22e-05)]_49 chr2L:14589096-14589216 8.66e-02 120 chrX:2302579-2302699 2.04e-01 120 chr3R:6791459-6791579 2.36e-02 120 chr2L:13881486-13881606 5.22e-02 120 chrX:13754494-13754614 7.57e-02 65_[+3(4.74e-05)]_47 chrX:18635441-18635561 6.91e-01 120 chr2R:8928063-8928183 2.50e-02 10_[+1(5.41e-05)]_41_[+1(1.22e-05)]_\ 53 chr3R:8113411-8113531 9.19e-03 64_[+2(3.91e-05)]_48 chr2R:25114659-25114779 5.50e-01 120 chr3R:24607133-24607253 7.32e-01 120 chrX:15071257-15071377 2.41e-01 120 chrX:3297717-3297837 1.46e-02 29_[+2(1.22e-05)]_83 chr2L:19161330-19161450 3.56e-03 69_[+2(3.91e-05)]_43 chr3R:17708975-17709095 5.65e-05 64_[+1(6.65e-05)]_[+3(1.57e-05)]_40 chr3R:5781955-5782075 3.53e-01 120 chr2L:7033428-7033548 6.00e-05 12_[+3(3.47e-05)]_27_[+1(5.41e-05)]_\ 8_[+3(9.47e-05)]_13_[+4(3.22e-05)]_28 chr3R:19880791-19880911 4.19e-02 47_[+1(1.22e-05)]_65 chr3L:6703556-6703676 2.01e-03 48_[+2(2.45e-05)]_64 chr3L:7435342-7435462 5.91e-01 120 chr3R:16934166-16934286 8.66e-03 30_[+5(2.93e-05)]_82 chr3R:25662533-25662653 7.55e-02 120 chr2L:73134-73254 5.16e-02 29_[+1(2.43e-05)]_83 chr2R:1521582-1521702 6.59e-01 120 chr3R:31945833-31945953 6.05e-02 82_[+1(2.43e-05)]_30 chr3L:18667892-18668012 3.07e-01 120 chr3L:15563030-15563150 5.61e-02 39_[+1(2.43e-05)]_73 chr2R:10439116-10439236 1.81e-01 120 chr2L:15751109-15751229 5.55e-01 120 chrX:19566118-19566238 3.96e-03 70_[+1(2.43e-05)]_42 chr3L:12139221-12139341 4.90e-04 1_[+3(1.57e-05)]_41_[+1(1.22e-05)]_\ 27_[+1(3.93e-05)]_27 chr3R:15139663-15139783 2.33e-01 120 chr2R:20533034-20533154 1.57e-01 60_[+1(3.93e-05)]_52 chr2L:5045280-5045400 7.25e-05 43_[+5(8.00e-06)]_19_[+2(1.22e-05)]_\ 42 chr2L:10849832-10849952 6.65e-01 120 chr2R:11198224-11198344 6.91e-02 120 chr2L:14022584-14022704 2.43e-02 42_[+1(1.22e-05)]_70 chr2L:470038-470158 2.29e-02 83_[+4(5.89e-05)]_29 chr2R:5776460-5776580 1.98e-03 43_[+1(6.65e-05)]_22_[+1(6.65e-05)]_\ 39 chr3L:13450683-13450803 3.88e-03 120 chrX:21373950-21374070 4.46e-02 4_[+2(8.12e-05)]_108 chr2R:8925604-8925724 2.60e-01 120 chr3L:8074142-8074262 1.20e-01 120 chr2L:11808034-11808154 3.63e-03 24_[+3(1.57e-05)]_[+3(4.74e-05)]_80 chrX:3694109-3694229 1.33e-01 120 chr3R:18731358-18731478 8.37e-02 120 chr3R:21640240-21640360 2.01e-01 120 chr3R:23760788-23760908 4.85e-01 120 chr2R:10564174-10564294 5.15e-02 52_[+1(1.22e-05)]_60 chr3R:14557997-14558117 1.28e-04 13_[+5(8.00e-06)]_69_[+1(7.87e-05)]_\ 22 chr3R:21739787-21739907 8.66e-03 77_[+3(8.18e-05)]_35 chr2L:12040781-12040901 9.26e-03 10_[+1(2.43e-05)]_102 chr3L:19337699-19337819 7.04e-03 120 chr3L:20185381-20185501 1.96e-02 69_[+1(3.93e-05)]_43 chr3R:9014204-9014324 3.06e-02 65_[+1(1.22e-05)]_47 chr3L:21349272-21349392 3.23e-02 120 chr2R:23079214-23079334 1.30e-01 120 chr2R:8922679-8922799 6.79e-01 120 chr2R:20316202-20316322 4.37e-04 65_[+2(1.22e-05)]_47 chrX:2355842-2355962 1.45e-02 33_[+1(5.41e-05)]_79 chr3R:21720059-21720179 1.03e-02 97_[+2(2.45e-05)]_15 chrX:13383894-13384014 4.21e-05 32_[+2(1.22e-05)]_33_[+2(1.22e-05)]_\ 19_[+1(3.93e-05)]_12 chrX:3967964-3968084 2.55e-01 99_[+2(8.12e-05)]_13 chr2L:18377349-18377469 1.88e-01 120 chrX:13257255-13257375 3.42e-01 120 chr2R:1515597-1515717 8.81e-01 120 chr3L:17379430-17379550 2.66e-01 120 chr3L:20395689-20395809 2.15e-03 38_[+1(3.93e-05)]_63_[+4(3.22e-05)]_\ 3 chr2R:17714448-17714568 1.04e-01 27_[+1(1.22e-05)]_85 chr2L:16285054-16285174 3.44e-01 120 chr3R:7936714-7936834 3.18e-01 120 chr4:980250-980370 7.61e-02 120 chr3L:12139421-12139541 3.90e-01 120 chr3L:775021-775141 2.76e-01 120 chr2L:12055867-12055987 3.24e-02 76_[+2(2.45e-05)]_36 chr3L:20185586-20185706 7.39e-01 120 chr2R:12437181-12437301 2.03e-01 120 chr3L:3566979-3567099 3.94e-04 30_[+1(2.43e-05)]_5_[+4(5.89e-05)]_\ 69 chr3L:13022134-13022254 6.41e-02 120 chr3L:17532285-17532405 4.83e-03 6_[+3(8.18e-05)]_35_[+4(5.89e-05)]_\ 63 chr3R:29772937-29773057 3.36e-01 120 chrX:6643077-6643197 1.56e-01 120 chr2R:18357667-18357787 9.23e-04 110_[+3(3.47e-05)]_2 chr2R:9092751-9092871 4.30e-01 120 chrX:11391194-11391314 6.04e-04 74_[+2(3.91e-05)]_38 chrX:5312027-5312147 1.31e-01 120 chr3L:11370522-11370642 8.71e-03 30_[+2(5.39e-05)]_82 chr2L:11970780-11970900 7.01e-03 34_[+1(3.93e-05)]_34_[+3(4.74e-05)]_\ 36 chr3R:19094001-19094121 8.27e-03 30_[+2(2.45e-05)]_82 chrX:18789687-18789807 7.95e-01 120 chrX:18789932-18790052 9.44e-01 120 chr3R:25445603-25445723 3.78e-02 120 chr2R:15381284-15381404 2.68e-01 120 chr3L:18349381-18349501 3.09e-01 120 chr3R:25880404-25880524 3.41e-01 120 chrX:17531952-17532072 9.54e-01 120 chr2L:9496556-9496676 7.54e-03 31_[+1(2.43e-05)]_81 chrX:19496286-19496406 3.27e-02 120 chr2R:10103693-10103813 3.73e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************