******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG15011.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:18965718-18965838 1.0000 120 chr3L:11400770-11400890 1.0000 120 chr3R:14912738-14912858 1.0000 120 chr2L:10822760-10822880 1.0000 120 chr3L:20823323-20823443 1.0000 120 chr3L:4445969-4446089 1.0000 120 chr3L:7866759-7866879 1.0000 120 chr2L:7778431-7778551 1.0000 120 chr3L:11317547-11317667 1.0000 120 chr2R:17918920-17919040 1.0000 120 chr3R:18740806-18740926 1.0000 120 chr3L:16893777-16893897 1.0000 120 chrX:18125654-18125774 1.0000 120 chr2L:16519749-16519869 1.0000 120 chr2L:14501730-14501850 1.0000 120 chr2L:1619312-1619432 1.0000 120 chr3L:11556791-11556911 1.0000 120 chr3L:15741937-15742057 1.0000 120 chr2R:15515763-15515883 1.0000 120 chr3R:4804863-4804983 1.0000 120 chr2L:243965-244085 1.0000 120 chrX:13632826-13632946 1.0000 120 chr3R:14711518-14711638 1.0000 120 chrX:22488489-22488609 1.0000 120 chr3L:17977745-17977865 1.0000 120 chr2L:18658166-18658286 1.0000 120 chrX:515847-515967 1.0000 120 chr3R:25448815-25448935 1.0000 120 chr2R:22199988-22200108 1.0000 120 chr2R:22661271-22661391 1.0000 120 chr2R:19971480-19971600 1.0000 120 chr3L:11280834-11280954 1.0000 120 chrX:7704655-7704775 1.0000 120 chr2R:14487663-14487783 1.0000 120 chr3R:16981150-16981270 1.0000 120 chr3R:31369149-31369269 1.0000 120 chr3R:10186202-10186322 1.0000 120 chrX:4762427-4762547 1.0000 120 chr2L:9509698-9509818 1.0000 120 chr3R:9529723-9529843 1.0000 120 chr3R:11460884-11461004 1.0000 120 chr3R:26242584-26242704 1.0000 120 chr3L:1549465-1549585 1.0000 120 chr3L:16657085-16657205 1.0000 120 chr3L:12045642-12045762 1.0000 120 chr2L:3323580-3323700 1.0000 120 chr3L:9695963-9696083 1.0000 120 chr2L:134848-134968 1.0000 120 chr3L:16714274-16714394 1.0000 120 chr3L:11290034-11290154 1.0000 120 chr2R:23656699-23656819 1.0000 120 chr2L:9614110-9614230 1.0000 120 chr3R:14054227-14054347 1.0000 120 chr4:1218950-1219070 1.0000 120 chr2L:18548818-18548938 1.0000 120 chr3L:4025870-4025990 1.0000 120 chr3R:9390336-9390456 1.0000 120 chr3L:10742320-10742440 1.0000 120 chr2R:15802022-15802142 1.0000 120 chr3L:13986489-13986609 1.0000 120 chr3R:6399413-6399533 1.0000 120 chrX:4457993-4458113 1.0000 120 chr3L:17808991-17809111 1.0000 120 chr2R:9857216-9857336 1.0000 120 chr3R:19011011-19011131 1.0000 120 chr2L:18151914-18152034 1.0000 120 chr3R:6401135-6401255 1.0000 120 chr2L:9187576-9187696 1.0000 120 chr2R:23740398-23740518 1.0000 120 chr3L:10827530-10827650 1.0000 120 chr2R:16845459-16845579 1.0000 120 chr2L:8634103-8634223 1.0000 120 chr3L:3406511-3406631 1.0000 120 chr3R:8318051-8318171 1.0000 120 chr3R:23178212-23178332 1.0000 120 chrX:278479-278599 1.0000 120 chr2R:15846381-15846501 1.0000 120 chr2L:14483830-14483950 1.0000 120 chr2L:85230-85350 1.0000 120 chr2L:18556454-18556574 1.0000 120 chr2R:9603348-9603468 1.0000 120 chr3L:11342587-11342707 1.0000 120 chr2L:2906246-2906366 1.0000 120 chr3R:5056249-5056369 1.0000 120 chr3R:21825244-21825364 1.0000 120 chr3R:15677449-15677569 1.0000 120 chr2R:22508126-22508246 1.0000 120 chr2L:5117202-5117322 1.0000 120 chr3R:21852574-21852694 1.0000 120 chr2R:10272890-10273010 1.0000 120 chr2L:1048326-1048446 1.0000 120 chr3L:9372737-9372857 1.0000 120 chr3R:14479757-14479877 1.0000 120 chr3R:15292441-15292561 1.0000 120 chr2R:13909090-13909210 1.0000 120 chr3L:15591390-15591510 1.0000 120 chr2R:9444273-9444393 1.0000 120 chr2R:18667112-18667232 1.0000 120 chr2R:23615222-23615342 1.0000 120 chr2L:1125494-1125614 1.0000 120 chrX:13626020-13626140 1.0000 120 chr3L:17791661-17791781 1.0000 120 chr3R:14351491-14351611 1.0000 120 chr2R:7054325-7054445 1.0000 120 chr3R:16510291-16510411 1.0000 120 chr3L:17447883-17448003 1.0000 120 chr3L:11258515-11258635 1.0000 120 chr2L:12509589-12509709 1.0000 120 chr3R:19151874-19151994 1.0000 120 chr3L:3390647-3390767 1.0000 120 chr3R:19613077-19613197 1.0000 120 chrX:5745173-5745293 1.0000 120 chr2L:3397770-3397890 1.0000 120 chr2L:18566782-18566902 1.0000 120 chr3R:9083526-9083646 1.0000 120 chr3L:18837931-18838051 1.0000 120 chr2R:22205711-22205831 1.0000 120 chr2R:13935259-13935379 1.0000 120 chr3R:15094248-15094368 1.0000 120 chr3R:26494386-26494506 1.0000 120 chr3R:28556542-28556662 1.0000 120 chr3L:9468363-9468483 1.0000 120 chr3L:15275742-15275862 1.0000 120 chrX:6638278-6638398 1.0000 120 chr3L:18030031-18030151 1.0000 120 chr2L:2864694-2864814 1.0000 120 chr3L:15814174-15814294 1.0000 120 chr3L:5188429-5188549 1.0000 120 chr3R:18508427-18508547 1.0000 120 chr2R:10079940-10080060 1.0000 120 chr3R:23803816-23803936 1.0000 120 chr2L:3092660-3092780 1.0000 120 chr3R:5031997-5032117 1.0000 120 chrX:13676653-13676773 1.0000 120 chr2R:13482141-13482261 1.0000 120 chr2L:16526562-16526682 1.0000 120 chr3L:17532402-17532522 1.0000 120 chr3R:12562165-12562285 1.0000 120 chrX:19352922-19353042 1.0000 120 chrX:5095748-5095868 1.0000 120 chr3R:14875806-14875926 1.0000 120 chr3L:11286777-11286897 1.0000 120 chr2R:15480294-15480414 1.0000 120 chr3L:15549060-15549180 1.0000 120 chrX:13320816-13320936 1.0000 120 chrX:12889240-12889360 1.0000 120 chr3R:7892830-7892950 1.0000 120 chr3L:6612753-6612873 1.0000 120 chrX:13109793-13109913 1.0000 120 chrX:16385975-16386095 1.0000 120 chr3L:21205132-21205252 1.0000 120 chr3L:18179943-18180063 1.0000 120 chr3R:19924487-19924607 1.0000 120 chr3L:1738059-1738179 1.0000 120 chr2R:21549136-21549256 1.0000 120 chr3R:28959180-28959300 1.0000 120 chrX:15120204-15120324 1.0000 120 chr3L:7996541-7996661 1.0000 120 chrX:8112871-8112991 1.0000 120 chr3L:8834955-8835075 1.0000 120 chr3L:10679951-10680071 1.0000 120 chr2L:14011875-14011995 1.0000 120 chr3L:11580067-11580187 1.0000 120 chr2R:24139132-24139252 1.0000 120 chrX:7691478-7691598 1.0000 120 chr3R:17955863-17955983 1.0000 120 chr3R:23181087-23181207 1.0000 120 chr3L:7262612-7262732 1.0000 120 chr2R:24745992-24746112 1.0000 120 chr2R:19137957-19138077 1.0000 120 chr3R:6760870-6760990 1.0000 120 chr2L:8461958-8462078 1.0000 120 chr2L:8165915-8166035 1.0000 120 chr3L:21011386-21011506 1.0000 120 chr3L:3519011-3519131 1.0000 120 chr3R:18438899-18439019 1.0000 120 chr2L:18678386-18678506 1.0000 120 chr2L:19019226-19019346 1.0000 120 chr2R:17085651-17085771 1.0000 120 chr2L:9775381-9775501 1.0000 120 chr3L:21042499-21042619 1.0000 120 chr2R:18202769-18202889 1.0000 120 chrX:9135198-9135318 1.0000 120 chr2R:9660238-9660358 1.0000 120 chr3L:14274817-14274937 1.0000 120 chr3R:26280515-26280635 1.0000 120 chr2R:14305268-14305388 1.0000 120 chr3L:6216063-6216183 1.0000 120 chr3L:7782365-7782485 1.0000 120 chr3R:6406402-6406522 1.0000 120 chr3L:3932921-3933041 1.0000 120 chrX:11391725-11391845 1.0000 120 chr3R:10520561-10520681 1.0000 120 chrX:17507361-17507481 1.0000 120 chr3L:16150053-16150173 1.0000 120 chr2L:14377100-14377220 1.0000 120 chrX:8493578-8493698 1.0000 120 chr3R:24544476-24544596 1.0000 120 chr2L:13461003-13461123 1.0000 120 chr2R:10194996-10195116 1.0000 120 chr3R:17605235-17605355 1.0000 120 chr3L:16054310-16054430 1.0000 120 chr3R:23284424-23284544 1.0000 120 chr3R:21187071-21187191 1.0000 120 chr2R:16848424-16848544 1.0000 120 chr3R:15093013-15093133 1.0000 120 chr2R:18811973-18812093 1.0000 120 chr3L:11292339-11292459 1.0000 120 chr3R:21176711-21176831 1.0000 120 chrX:16580061-16580181 1.0000 120 chrX:14634861-14634981 1.0000 120 chr2R:13586440-13586560 1.0000 120 chr2L:20079059-20079179 1.0000 120 chr3R:25168368-25168488 1.0000 120 chr3R:21420079-21420199 1.0000 120 chr3L:4122652-4122772 1.0000 120 chrX:17830475-17830595 1.0000 120 chr2R:6464959-6465079 1.0000 120 chrX:16573817-16573937 1.0000 120 chr2L:19930229-19930349 1.0000 120 chr3R:25445889-25446009 1.0000 120 chr2L:10986354-10986474 1.0000 120 chr2L:2857965-2858085 1.0000 120 chr2L:14376891-14377011 1.0000 120 chr3L:18997202-18997322 1.0000 120 chrX:11715511-11715631 1.0000 120 chr2R:9309631-9309751 1.0000 120 chr3L:21034261-21034381 1.0000 120 chr3R:20263840-20263960 1.0000 120 chr2L:3228824-3228944 1.0000 120 chr2L:1636663-1636783 1.0000 120 chr2R:15134301-15134421 1.0000 120 chr3L:8741326-8741446 1.0000 120 chrX:17582810-17582930 1.0000 120 chr3R:5042474-5042594 1.0000 120 chr3L:11528567-11528687 1.0000 120 chr2L:22036995-22037115 1.0000 120 chr3L:10866754-10866874 1.0000 120 chr2L:1094878-1094998 1.0000 120 chr3R:26105970-26106090 1.0000 120 chr3R:22878493-22878613 1.0000 120 chr2R:22062450-22062570 1.0000 120 chr2L:3058246-3058366 1.0000 120 chr3R:29089784-29089904 1.0000 120 chrX:2591692-2591812 1.0000 120 chr2L:20807735-20807855 1.0000 120 chr2R:23578604-23578724 1.0000 120 chr2R:14077595-14077715 1.0000 120 chr3R:29068860-29068980 1.0000 120 chr2L:14440969-14441089 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG15011/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG15011.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.335 C 0.175 G 0.173 T 0.317 Background letter frequencies (from file dataset with add-one prior applied): A 0.335 C 0.175 G 0.173 T 0.317 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GSMGSSSG MEME-1 width = 8 sites = 16 llr = 157 E-value = 2.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSMGSSSG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::4::::: pos.-specific C :64:454: probability G a4:a656a matrix T ::2::::: bits 2.5 * * * 2.3 * * * 2.0 * * * 1.8 * * * Relative 1.5 ** ***** Entropy 1.3 ** ***** (14.2 bits) 1.0 ** ***** 0.8 ** ***** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCAGGCGG consensus GC CGC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSMGSSSG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:3058246-3058366 4 6.63e-06 TTG GGCGGGGG CTGTGCTGAC chr3L:11292339-11292459 5 6.63e-06 TGGG GGCGGCGG AGCATCGATG chr3L:14274817-14274937 40 6.63e-06 CTAAATATTT GCCGCCGG CAAATATTTA chr3L:16714274-16714394 4 6.63e-06 TTT GGCGGCGG CAGCGGCGCG chr3L:3390647-3390767 105 9.79e-06 CAGGGGCGGA GCAGGCGG CTTGTGGA chr3R:9529723-9529843 89 9.79e-06 CGTGAACGAA GCAGGGGG AATTAATCAA chr3L:11528567-11528687 96 1.48e-05 CCCACCCAAC GCCGCCCG TTGTGCCCGC chr2L:20079059-20079179 38 2.43e-05 CCCTTTAAAA GGAGGGGG GTTTTGTTGT chr2R:24745992-24746112 5 2.43e-05 GGCT GCAGCGGG GTTCCGGGGG chr2R:22199988-22200108 25 2.43e-05 GTTTTCGATC GCAGGGCG CCACTTTAGC chr2R:19137957-19138077 75 2.60e-05 CACAGCTCAA GGCGCGCG TATCCAACAT chr2L:2864694-2864814 108 3.55e-05 GAGCCAGCGA GCAGCCCG TCCAG chr2R:14487663-14487783 102 3.55e-05 CCAGCTGCTT GCAGCGCG CGTGTCGGTT chrX:278479-278599 41 5.07e-05 GTAATTGTAG GCTGGCCG TTGCCCTGTT chrX:5745173-5745293 25 5.98e-05 ACGTGAGCCA GGTGGGCG ACACGCGTGT chr2L:1125494-1125614 96 5.98e-05 ACACACAACC GGTGCCGG TTTGAACCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSMGSSSG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3058246-3058366 6.6e-06 3_[+1]_109 chr3L:11292339-11292459 6.6e-06 4_[+1]_108 chr3L:14274817-14274937 6.6e-06 39_[+1]_73 chr3L:16714274-16714394 6.6e-06 3_[+1]_109 chr3L:3390647-3390767 9.8e-06 104_[+1]_8 chr3R:9529723-9529843 9.8e-06 88_[+1]_24 chr3L:11528567-11528687 1.5e-05 95_[+1]_17 chr2L:20079059-20079179 2.4e-05 37_[+1]_75 chr2R:24745992-24746112 2.4e-05 4_[+1]_108 chr2R:22199988-22200108 2.4e-05 24_[+1]_88 chr2R:19137957-19138077 2.6e-05 74_[+1]_38 chr2L:2864694-2864814 3.6e-05 107_[+1]_5 chr2R:14487663-14487783 3.6e-05 101_[+1]_11 chrX:278479-278599 5.1e-05 40_[+1]_72 chrX:5745173-5745293 6e-05 24_[+1]_88 chr2L:1125494-1125614 6e-05 95_[+1]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSMGSSSG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSMGSSSG width=8 seqs=16 chr2L:3058246-3058366 ( 4) GGCGGGGG 1 chr3L:11292339-11292459 ( 5) GGCGGCGG 1 chr3L:14274817-14274937 ( 40) GCCGCCGG 1 chr3L:16714274-16714394 ( 4) GGCGGCGG 1 chr3L:3390647-3390767 ( 105) GCAGGCGG 1 chr3R:9529723-9529843 ( 89) GCAGGGGG 1 chr3L:11528567-11528687 ( 96) GCCGCCCG 1 chr2L:20079059-20079179 ( 38) GGAGGGGG 1 chr2R:24745992-24746112 ( 5) GCAGCGGG 1 chr2R:22199988-22200108 ( 25) GCAGGGCG 1 chr2R:19137957-19138077 ( 75) GGCGCGCG 1 chr2L:2864694-2864814 ( 108) GCAGCCCG 1 chr2R:14487663-14487783 ( 102) GCAGCGCG 1 chrX:278479-278599 ( 41) GCTGGCCG 1 chrX:5745173-5745293 ( 25) GGTGGGCG 1 chr2L:1125494-1125614 ( 96) GGTGCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSMGSSSG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 2.9e+003 -1064 -1064 253 -1064 -1064 169 134 -1064 39 110 -1064 -76 -1064 -1064 253 -1064 -1064 132 170 -1064 -1064 152 153 -1064 -1064 132 170 -1064 -1064 -1064 253 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSMGSSSG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.9e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.562500 0.437500 0.000000 0.437500 0.375000 0.000000 0.187500 0.000000 0.000000 1.000000 0.000000 0.000000 0.437500 0.562500 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.437500 0.562500 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSMGSSSG MEME-1 regular expression -------------------------------------------------------------------------------- G[CG][AC]G[GC][CG][GC]G -------------------------------------------------------------------------------- Time 7.55 secs. ******************************************************************************** ******************************************************************************** MOTIF TGSGSCVV MEME-2 width = 8 sites = 21 llr = 198 E-value = 3.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGSGSCVV MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::::43 pos.-specific C ::4:3a34 probability G :a6a7:22 matrix T a::::::: bits 2.5 * * * 2.3 * * * 2.0 * * * 1.8 ** * * Relative 1.5 ****** Entropy 1.3 ****** (13.6 bits) 1.0 ****** 0.8 ****** * 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGGGGCAC consensus C C CA sequence GG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGSGSCVV MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:7996541-7996661 51 1.52e-06 TTCGCTGCGT TGGGGCCC CCAGCATATG chr3L:17808991-17809111 93 4.57e-06 TCAGAGCAAG TGGGGCGC ATTCTGTCTG chrX:12889240-12889360 62 7.48e-06 GGATATTCTT TGGGGCAC AGTCGGCCGC chr3L:11292339-11292459 55 1.05e-05 GTGCAAAACG TGGGGCCG TCGATTTCTA chr2L:1125494-1125614 9 1.05e-05 GGAGGCAC TGCGGCGC CGCATCCACA chr2L:3058246-3058366 38 1.50e-05 AGCAGTACTT TGGGCCCC AATCGATGGC chrX:7691478-7691598 11 2.38e-05 GATTTTCATT TGGGGCAG GCACAACAAG chr2L:1048326-1048446 20 2.38e-05 GGCCCACAGA TGGGGCCA AAATTAAAGC chr2L:2864694-2864814 1 3.13e-05 . TGGGCCAC AGAAAGTGAA chr2L:9187576-9187696 50 3.13e-05 ATTCCTTATT TGGGCCAC ACATTTTTGT chr2R:22199988-22200108 67 3.13e-05 GAACTGCTAA TGGGCCAC AAATATCGAC chr3R:20263840-20263960 17 4.01e-05 CACATGCGTG TGCGGCCA GCCAGCCCGT chr3L:6612753-6612873 90 4.01e-05 TGCTTATCAA TGGGGCGA ATTTCGTGCG chr3L:3390647-3390767 13 4.01e-05 ACCGTATCTC TGCGGCAG TCGCTAACAA chr2L:85230-85350 57 4.01e-05 TGACTGACAT TGCGGCCA CGAAATCAGG chr3R:23178212-23178332 74 4.01e-05 ATGTGTCAAT TGCGGCCA AAACACCGTT chr2L:2857965-2858085 95 4.87e-05 TGCCCCACTG TGCGCCGC CCACTTTCCG chr2L:9775381-9775501 67 6.33e-05 GGAAATTGTT TGCGGCAA ATATATTATT chr3L:11290034-11290154 6 6.33e-05 AAAGA TGGGCCGG TCAAAAAATA chr3L:17977745-17977865 107 6.33e-05 GTCAGGCAAT TGCGGCAA ATATTA chr2R:21549136-21549256 48 7.95e-05 GTGCGCATTG TGCGCCAG CAACTGTGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGSGSCVV MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7996541-7996661 1.5e-06 50_[+2]_62 chr3L:17808991-17809111 4.6e-06 92_[+2]_20 chrX:12889240-12889360 7.5e-06 61_[+2]_51 chr3L:11292339-11292459 1.1e-05 54_[+2]_58 chr2L:1125494-1125614 1.1e-05 8_[+2]_104 chr2L:3058246-3058366 1.5e-05 37_[+2]_75 chrX:7691478-7691598 2.4e-05 10_[+2]_102 chr2L:1048326-1048446 2.4e-05 19_[+2]_93 chr2L:2864694-2864814 3.1e-05 [+2]_112 chr2L:9187576-9187696 3.1e-05 49_[+2]_63 chr2R:22199988-22200108 3.1e-05 66_[+2]_46 chr3R:20263840-20263960 4e-05 16_[+2]_96 chr3L:6612753-6612873 4e-05 89_[+2]_23 chr3L:3390647-3390767 4e-05 12_[+2]_100 chr2L:85230-85350 4e-05 56_[+2]_56 chr3R:23178212-23178332 4e-05 73_[+2]_39 chr2L:2857965-2858085 4.9e-05 94_[+2]_18 chr2L:9775381-9775501 6.3e-05 66_[+2]_46 chr3L:11290034-11290154 6.3e-05 5_[+2]_107 chr3L:17977745-17977865 6.3e-05 106_[+2]_6 chr2R:21549136-21549256 8e-05 47_[+2]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGSGSCVV MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGSGSCVV width=8 seqs=21 chr3L:7996541-7996661 ( 51) TGGGGCCC 1 chr3L:17808991-17809111 ( 93) TGGGGCGC 1 chrX:12889240-12889360 ( 62) TGGGGCAC 1 chr3L:11292339-11292459 ( 55) TGGGGCCG 1 chr2L:1125494-1125614 ( 9) TGCGGCGC 1 chr2L:3058246-3058366 ( 38) TGGGCCCC 1 chrX:7691478-7691598 ( 11) TGGGGCAG 1 chr2L:1048326-1048446 ( 20) TGGGGCCA 1 chr2L:2864694-2864814 ( 1) TGGGCCAC 1 chr2L:9187576-9187696 ( 50) TGGGCCAC 1 chr2R:22199988-22200108 ( 67) TGGGCCAC 1 chr3R:20263840-20263960 ( 17) TGCGGCCA 1 chr3L:6612753-6612873 ( 90) TGGGGCGA 1 chr3L:3390647-3390767 ( 13) TGCGGCAG 1 chr2L:85230-85350 ( 57) TGCGGCCA 1 chr3R:23178212-23178332 ( 74) TGCGGCCA 1 chr2L:2857965-2858085 ( 95) TGCGCCGC 1 chr2L:9775381-9775501 ( 67) TGCGGCAA 1 chr3L:11290034-11290154 ( 6) TGGGCCGG 1 chr3L:17977745-17977865 ( 107) TGCGGCAA 1 chr2R:21549136-21549256 ( 48) TGCGCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGSGSCVV MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2496 E= 3.5e+002 -1104 -1104 -1104 166 -1104 -1104 253 -1104 -1104 129 172 -1104 -1104 -1104 253 -1104 -1104 93 194 -1104 -1104 252 -1104 -1104 36 93 46 -1104 -1 129 46 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGSGSCVV MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 3.5e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.333333 0.238095 0.000000 0.333333 0.428571 0.238095 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGSGSCVV MEME-2 regular expression -------------------------------------------------------------------------------- TG[GC]G[GC]C[ACG][CAG] -------------------------------------------------------------------------------- Time 13.90 secs. ******************************************************************************** ******************************************************************************** MOTIF YAAACAAA MEME-3 width = 8 sites = 35 llr = 303 E-value = 1.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif YAAACAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :aaa:aa8 pos.-specific C 4:::a::2 probability G :::::::: matrix T 6::::::: bits 2.5 * 2.3 * 2.0 * 1.8 * Relative 1.5 ****** Entropy 1.3 ****** (12.5 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TAAACAAA consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAAACAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:3228824-3228944 108 4.33e-05 TATGCAAAGC CAAACAAA CAGGC chr2R:13586440-13586560 105 4.33e-05 ATAAAAAGCA CAAACAAA GAAACACA chr2L:8165915-8166035 73 4.33e-05 TAAACCACAC CAAACAAA CGGCTTGGCC chr3R:28959180-28959300 99 4.33e-05 CTTATAAAAC CAAACAAA TCAAAGAATT chr3R:15094248-15094368 31 4.33e-05 TACAAGTCAG CAAACAAA CCACACTTCG chr3R:19151874-19151994 53 4.33e-05 CGCTTTCTGG CAAACAAA GTAAAAGCGT chr2R:10272890-10273010 45 4.33e-05 ATAAAACACA CAAACAAA AAGTTATTGT chr3L:4025870-4025990 53 4.33e-05 TTTATCAGCG CAAACAAA AGCCGTCGAA chr3L:16714274-16714394 82 4.33e-05 acacaaataa caaacaaa cgaacaCAGT chrX:515847-515967 81 4.33e-05 GTGTacaaag caaacaaa gaaatcaaac chr3L:17977745-17977865 20 4.33e-05 TGGTAGCTGG CAAACAAA GGTAATCATA chr2L:3058246-3058366 78 1.22e-04 ACCGAGTGCA TAAACAAA CACAGTTTAG chr2R:22062450-22062570 45 1.22e-04 GTACAACAAC TAAACAAA CTAGCTATCT chr3L:11528567-11528687 49 1.22e-04 TTTAGGCATT TAAACAAA TAAACTTAGT chr3R:5042474-5042594 60 1.22e-04 TTTTAAGCAC TAAACAAA TAAATATAAT chr3R:20263840-20263960 80 1.22e-04 GTATCTATAG TAAACAAA AGCGCGTAAA chr2L:10986354-10986474 89 1.22e-04 TTAAGGGGTT TAAACAAA TAGTTGTGAT chr3R:18438899-18439019 26 1.22e-04 GCAAAGGTAA TAAACAAA TGTAAATAAA chr3L:3519011-3519131 67 1.22e-04 GCAAATAAAA TAAACAAA CATCATGTTT chrX:12889240-12889360 95 1.22e-04 AGGGGAGAAG TAAACAAA GGCGACGATC chr3L:15814174-15814294 61 1.22e-04 GATAAAAGCA TAAACAAA GAGTAAACAG chr3R:19613077-19613197 78 1.22e-04 GTATGCTAGG TAAACAAA TAACTTCTGT chr3L:17791661-17791781 8 1.22e-04 GTTAAAT TAAACAAA TAGTATTCAG chr2R:18667112-18667232 73 1.22e-04 GGCTCGGGCC TAAACAAA TGTTGGCACT chr3R:6401135-6401255 46 1.22e-04 ataaatgcta taaacaaa tGAGACGCTG chr2R:22661271-22661391 98 1.22e-04 AGCGAAAAAA TAAACAAA TAGATTTTGA chr3L:15741937-15742057 66 1.22e-04 AACAAACAGA TAAACAAA CGAATGAAAC chr3L:16893777-16893897 16 1.22e-04 AGACACAGCC TAAACAAA TCCCAGATCT chr3L:15275742-15275862 28 1.44e-04 TTGCAGTGCA CAAACAAC AACAATAAAT chr2R:13909090-13909210 20 1.44e-04 TTAATCAAAA CAAACAAC AGTAATTGTT chr3R:26105970-26106090 104 1.85e-04 TTTATTATTT TAAACAAC ACTTCTTAT chr3R:24544476-24544596 99 1.85e-04 GCTGAGAACG TAAACAAC AAAGCTCGCT chr3R:26280515-26280635 18 1.85e-04 TTCCTACAGA TAAACAAC TATGCATTTG chr3R:14479757-14479877 72 1.85e-04 ATGTGGAGTA TAAACAAC AAAGGCAGAA chr2L:85230-85350 19 1.85e-04 TTTAGGCAGA TAAACAAC GAAACGAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAAACAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3228824-3228944 4.3e-05 107_[+3]_5 chr2R:13586440-13586560 4.3e-05 104_[+3]_8 chr2L:8165915-8166035 4.3e-05 72_[+3]_40 chr3R:28959180-28959300 4.3e-05 98_[+3]_14 chr3R:15094248-15094368 4.3e-05 30_[+3]_82 chr3R:19151874-19151994 4.3e-05 52_[+3]_60 chr2R:10272890-10273010 4.3e-05 44_[+3]_68 chr3L:4025870-4025990 4.3e-05 52_[+3]_60 chr3L:16714274-16714394 4.3e-05 81_[+3]_31 chrX:515847-515967 4.3e-05 80_[+3]_32 chr3L:17977745-17977865 4.3e-05 19_[+3]_93 chr2L:3058246-3058366 0.00012 77_[+3]_35 chr2R:22062450-22062570 0.00012 44_[+3]_68 chr3L:11528567-11528687 0.00012 48_[+3]_64 chr3R:5042474-5042594 0.00012 59_[+3]_53 chr3R:20263840-20263960 0.00012 79_[+3]_33 chr2L:10986354-10986474 0.00012 88_[+3]_24 chr3R:18438899-18439019 0.00012 25_[+3]_87 chr3L:3519011-3519131 0.00012 66_[+3]_46 chrX:12889240-12889360 0.00012 94_[+3]_18 chr3L:15814174-15814294 0.00012 60_[+3]_52 chr3R:19613077-19613197 0.00012 77_[+3]_35 chr3L:17791661-17791781 0.00012 7_[+3]_105 chr2R:18667112-18667232 0.00012 72_[+3]_40 chr3R:6401135-6401255 0.00012 45_[+3]_67 chr2R:22661271-22661391 0.00012 97_[+3]_15 chr3L:15741937-15742057 0.00012 65_[+3]_47 chr3L:16893777-16893897 0.00012 15_[+3]_97 chr3L:15275742-15275862 0.00014 27_[+3]_85 chr2R:13909090-13909210 0.00014 19_[+3]_93 chr3R:26105970-26106090 0.00019 103_[+3]_9 chr3R:24544476-24544596 0.00019 98_[+3]_14 chr3R:26280515-26280635 0.00019 17_[+3]_95 chr3R:14479757-14479877 0.00019 71_[+3]_41 chr2L:85230-85350 0.00019 18_[+3]_94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAAACAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YAAACAAA width=8 seqs=35 chr2L:3228824-3228944 ( 108) CAAACAAA 1 chr2R:13586440-13586560 ( 105) CAAACAAA 1 chr2L:8165915-8166035 ( 73) CAAACAAA 1 chr3R:28959180-28959300 ( 99) CAAACAAA 1 chr3R:15094248-15094368 ( 31) CAAACAAA 1 chr3R:19151874-19151994 ( 53) CAAACAAA 1 chr2R:10272890-10273010 ( 45) CAAACAAA 1 chr3L:4025870-4025990 ( 53) CAAACAAA 1 chr3L:16714274-16714394 ( 82) CAAACAAA 1 chrX:515847-515967 ( 81) CAAACAAA 1 chr3L:17977745-17977865 ( 20) CAAACAAA 1 chr2L:3058246-3058366 ( 78) TAAACAAA 1 chr2R:22062450-22062570 ( 45) TAAACAAA 1 chr3L:11528567-11528687 ( 49) TAAACAAA 1 chr3R:5042474-5042594 ( 60) TAAACAAA 1 chr3R:20263840-20263960 ( 80) TAAACAAA 1 chr2L:10986354-10986474 ( 89) TAAACAAA 1 chr3R:18438899-18439019 ( 26) TAAACAAA 1 chr3L:3519011-3519131 ( 67) TAAACAAA 1 chrX:12889240-12889360 ( 95) TAAACAAA 1 chr3L:15814174-15814294 ( 61) TAAACAAA 1 chr3R:19613077-19613197 ( 78) TAAACAAA 1 chr3L:17791661-17791781 ( 8) TAAACAAA 1 chr2R:18667112-18667232 ( 73) TAAACAAA 1 chr3R:6401135-6401255 ( 46) TAAACAAA 1 chr2R:22661271-22661391 ( 98) TAAACAAA 1 chr3L:15741937-15742057 ( 66) TAAACAAA 1 chr3L:16893777-16893897 ( 16) TAAACAAA 1 chr3L:15275742-15275862 ( 28) CAAACAAC 1 chr2R:13909090-13909210 ( 20) CAAACAAC 1 chr3R:26105970-26106090 ( 104) TAAACAAC 1 chr3R:24544476-24544596 ( 99) TAAACAAC 1 chr3R:26280515-26280635 ( 18) TAAACAAC 1 chr3R:14479757-14479877 ( 72) TAAACAAC 1 chr2L:85230-85350 ( 19) TAAACAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAAACAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4775 E= 1.0e+001 -1177 109 -1177 99 158 -1177 -1177 -1177 158 -1177 -1177 -1177 158 -1177 -1177 -1177 -1177 252 -1177 -1177 158 -1177 -1177 -1177 158 -1177 -1177 -1177 126 19 -1177 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAAACAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 1.0e+001 0.000000 0.371429 0.000000 0.628571 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAAACAAA MEME-3 regular expression -------------------------------------------------------------------------------- [TC]AAACAA[AC] -------------------------------------------------------------------------------- Time 20.19 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGGGCGG MEME-4 width = 8 sites = 2 llr = 27 E-value = 6.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGGGCGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A a::::::: pos.-specific C :::::a:: probability G :aaaa:aa matrix T :::::::: bits 2.5 ******* 2.3 ******* 2.0 ******* 1.8 ******* Relative 1.5 ******** Entropy 1.3 ******** (19.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AGGGGCGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGCGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2857965-2858085 33 1.57e-06 AAAACTAAAT AGGGGCGG GCAATTGCTT chr3L:3390647-3390767 96 1.57e-06 tcagtGTTAC AGGGGCGG AGCAGGCGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGCGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2857965-2858085 1.6e-06 32_[+4]_80 chr3L:3390647-3390767 1.6e-06 95_[+4]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGCGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGGGCGG width=8 seqs=2 chr2L:2857965-2858085 ( 33) AGGGGCGG 1 chr3L:3390647-3390767 ( 96) AGGGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGCGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 6.5e+003 157 -765 -765 -765 -765 -765 252 -765 -765 -765 252 -765 -765 -765 252 -765 -765 -765 252 -765 -765 251 -765 -765 -765 -765 252 -765 -765 -765 252 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGCGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.5e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGGGCGG MEME-4 regular expression -------------------------------------------------------------------------------- AGGGGCGG -------------------------------------------------------------------------------- Time 26.47 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTGYTTT MEME-5 width = 8 sites = 46 llr = 366 E-value = 3.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTGYTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::3 pos.-specific C ::::4::: probability G ::1a:11: matrix T aa9:6997 bits 2.5 * 2.3 * 2.0 * 1.8 ** * Relative 1.5 ** * Entropy 1.3 **** ** (11.5 bits) 1.0 ******* 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTTGTTTT consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGYTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16573817-16573937 4 3.07e-05 GTG TTTGCTTT GCGGTGTCTG chr3L:6216063-6216183 34 3.07e-05 TTGGGTTATG TTTGCTTT TTAATTTGGC chr2L:2864694-2864814 88 3.07e-05 AACATTTGCA TTTGCTTT TAGAGCCAGC chr3L:3406511-3406631 3 3.07e-05 TA TTTGCTTT CTTTTCTAAA chr3L:4025870-4025990 75 3.07e-05 GTCGAATGTT TTTGCTTT TATTTATTCC chr2R:15515763-15515883 82 3.07e-05 TTTATTTTGT TTTGCTTT GTTGAAGTTG chr3L:11317547-11317667 29 3.07e-05 ACGCACAATA TTTGCTTT CAAGCATCAA chr3L:18997202-18997322 69 8.64e-05 GTCCAATTTA TTTGTTTT TCTTGTTTAT chr3L:4122652-4122772 21 8.64e-05 ACCAGTAACT TTTGTTTT CAATAGGTTT chrX:9135198-9135318 43 8.64e-05 GTACTCAGAG TTTGTTTT GTTGCTTTCT chr2R:18202769-18202889 1 8.64e-05 . TTTGTTTT CGTATATTTG chr2L:14011875-14011995 97 8.64e-05 TTGTTTAGAT TTTGTTTT TCACTTTGTC chrX:13320816-13320936 13 8.64e-05 TCTTAAAATA TTTGTTTT TTAATGTAAC chrX:19352922-19353042 47 8.64e-05 TTTAATTTTT TTTGTTTT TGTATACATT chr3L:17532402-17532522 55 8.64e-05 GAACTGACAt tttgtttt gtgtttcttt chr2R:13482141-13482261 99 8.64e-05 TTTTAGGATT TTTGTTTT ACTTTCTACG chr3R:5031997-5032117 48 8.64e-05 GCCTTCATTG TTTGTTTT CACATAATTA chr3L:11258515-11258635 18 8.64e-05 TGCTCCTGGC TTTGTTTT AAATTTCTCC chrX:7704655-7704775 40 8.64e-05 CTTGCAATTT TTTGTTTT GGATTATGTT chrX:17582810-17582930 45 1.19e-04 CCAACCATTA TTTGCTTA GTGGTAAATA chr3L:14274817-14274937 12 1.19e-04 ATATTTATTA TTTGCTTA TAAGGCCAAA chr2L:8165915-8166035 93 1.19e-04 GCTTGGCCTA TTTGCTTA TCTTATTCCC chrX:6638278-6638398 68 1.19e-04 TGCAGTCACG TTTGCTTA ATAAAATTAA chr2L:18151914-18152034 37 1.19e-04 AACTATTTAT TTTGCTTA GTAATTTATG chr2R:22661271-22661391 61 1.19e-04 TAAAAATATG TTTGCTTA GTGAGCAAAA chr3L:7866759-7866879 106 1.19e-04 TAAGCTACTA TTTGCTTA AGGCTCC chr3L:4445969-4446089 86 1.19e-04 AAATGTCACA TTTGCTTA AAGAAATTGT chr3L:18179943-18180063 91 1.78e-04 GCGCATTTGA TTTGTTTA CCAAATAAGT chrX:13626020-13626140 16 1.78e-04 AGAACCTGTT TTTGTTTA CTTGCAAAAA chr3L:13986489-13986609 48 1.78e-04 CGAATGTGTG TTTGTTTA ATCATATTTA chr3R:11460884-11461004 15 1.78e-04 ATACGAGATG TTTGTTTA GAAAATGCAT chr3L:11400770-11400890 85 1.78e-04 TATTCGCGAT TTTGTTTA GTAAGGTAAA chr2L:18965718-18965838 106 1.78e-04 AATAAACTAA TTTGTTTA TTAAAAG chr2L:1636663-1636783 85 2.42e-04 GTGTGGAGTA TTTGTTGT TGTAGCCATA chr3R:20263840-20263960 62 2.42e-04 TATCTCAAAG TTTGTTGT GTATCTATAG chr3R:23181087-23181207 38 2.42e-04 ATAATAAGTA TTTGTTGT GTATATACAA chrX:5745173-5745293 51 2.42e-04 GTGAATAGCT TTGGCTTT GCCAAAAACA chr3R:15677449-15677569 64 2.42e-04 TTATTTGTAT TTGGCTTT CGCCTCGCTG chr2L:18658166-18658286 59 2.42e-04 AAGAAAATAA TTTGTTGT ACAATAGGTT chr3L:16893777-16893897 97 2.42e-04 TTAAAAGATT TTTGTTGT TTAGTTTGTC chrX:11715511-11715631 38 2.76e-04 GTGCGTCAGG TTTGCTGA ATTTTACTGA chr3L:21011386-21011506 113 2.76e-04 AATTTGAACC TTTGCGTT chr3R:14912738-14912858 108 2.76e-04 CTTGCGCAAT TTTGCGTT ATTTT chr2L:5117202-5117322 95 3.06e-04 TTGTGTTAAC TTGGTTTT ATACATCGAC chr2L:1619312-1619432 87 3.06e-04 AGATTCCAAA TTGGTTTT CTTTTGCCTG chr2R:23740398-23740518 55 3.87e-04 ATTTGAATAT TTTGTGTT TGTATTTGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGYTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16573817-16573937 3.1e-05 3_[+5]_109 chr3L:6216063-6216183 3.1e-05 33_[+5]_79 chr2L:2864694-2864814 3.1e-05 87_[+5]_25 chr3L:3406511-3406631 3.1e-05 2_[+5]_110 chr3L:4025870-4025990 3.1e-05 74_[+5]_38 chr2R:15515763-15515883 3.1e-05 81_[+5]_31 chr3L:11317547-11317667 3.1e-05 28_[+5]_84 chr3L:18997202-18997322 8.6e-05 68_[+5]_44 chr3L:4122652-4122772 8.6e-05 20_[+5]_92 chrX:9135198-9135318 8.6e-05 42_[+5]_70 chr2R:18202769-18202889 8.6e-05 [+5]_112 chr2L:14011875-14011995 8.6e-05 96_[+5]_16 chrX:13320816-13320936 8.6e-05 12_[+5]_100 chrX:19352922-19353042 8.6e-05 46_[+5]_66 chr3L:17532402-17532522 8.6e-05 54_[+5]_58 chr2R:13482141-13482261 8.6e-05 98_[+5]_14 chr3R:5031997-5032117 8.6e-05 47_[+5]_65 chr3L:11258515-11258635 8.6e-05 17_[+5]_95 chrX:7704655-7704775 8.6e-05 39_[+5]_73 chrX:17582810-17582930 0.00012 44_[+5]_68 chr3L:14274817-14274937 0.00012 11_[+5]_101 chr2L:8165915-8166035 0.00012 92_[+5]_20 chrX:6638278-6638398 0.00012 67_[+5]_45 chr2L:18151914-18152034 0.00012 36_[+5]_76 chr2R:22661271-22661391 0.00012 60_[+5]_52 chr3L:7866759-7866879 0.00012 105_[+5]_7 chr3L:4445969-4446089 0.00012 85_[+5]_27 chr3L:18179943-18180063 0.00018 90_[+5]_22 chrX:13626020-13626140 0.00018 15_[+5]_97 chr3L:13986489-13986609 0.00018 47_[+5]_65 chr3R:11460884-11461004 0.00018 14_[+5]_98 chr3L:11400770-11400890 0.00018 84_[+5]_28 chr2L:18965718-18965838 0.00018 105_[+5]_7 chr2L:1636663-1636783 0.00024 84_[+5]_28 chr3R:20263840-20263960 0.00024 61_[+5]_51 chr3R:23181087-23181207 0.00024 37_[+5]_75 chrX:5745173-5745293 0.00024 50_[+5]_62 chr3R:15677449-15677569 0.00024 63_[+5]_49 chr2L:18658166-18658286 0.00024 58_[+5]_54 chr3L:16893777-16893897 0.00024 96_[+5]_16 chrX:11715511-11715631 0.00028 37_[+5]_75 chr3L:21011386-21011506 0.00028 112_[+5] chr3R:14912738-14912858 0.00028 107_[+5]_5 chr2L:5117202-5117322 0.00031 94_[+5]_18 chr2L:1619312-1619432 0.00031 86_[+5]_26 chr2R:23740398-23740518 0.00039 54_[+5]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGYTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTGYTTT width=8 seqs=46 chrX:16573817-16573937 ( 4) TTTGCTTT 1 chr3L:6216063-6216183 ( 34) TTTGCTTT 1 chr2L:2864694-2864814 ( 88) TTTGCTTT 1 chr3L:3406511-3406631 ( 3) TTTGCTTT 1 chr3L:4025870-4025990 ( 75) TTTGCTTT 1 chr2R:15515763-15515883 ( 82) TTTGCTTT 1 chr3L:11317547-11317667 ( 29) TTTGCTTT 1 chr3L:18997202-18997322 ( 69) TTTGTTTT 1 chr3L:4122652-4122772 ( 21) TTTGTTTT 1 chrX:9135198-9135318 ( 43) TTTGTTTT 1 chr2R:18202769-18202889 ( 1) TTTGTTTT 1 chr2L:14011875-14011995 ( 97) TTTGTTTT 1 chrX:13320816-13320936 ( 13) TTTGTTTT 1 chrX:19352922-19353042 ( 47) TTTGTTTT 1 chr3L:17532402-17532522 ( 55) TTTGTTTT 1 chr2R:13482141-13482261 ( 99) TTTGTTTT 1 chr3R:5031997-5032117 ( 48) TTTGTTTT 1 chr3L:11258515-11258635 ( 18) TTTGTTTT 1 chrX:7704655-7704775 ( 40) TTTGTTTT 1 chrX:17582810-17582930 ( 45) TTTGCTTA 1 chr3L:14274817-14274937 ( 12) TTTGCTTA 1 chr2L:8165915-8166035 ( 93) TTTGCTTA 1 chrX:6638278-6638398 ( 68) TTTGCTTA 1 chr2L:18151914-18152034 ( 37) TTTGCTTA 1 chr2R:22661271-22661391 ( 61) TTTGCTTA 1 chr3L:7866759-7866879 ( 106) TTTGCTTA 1 chr3L:4445969-4446089 ( 86) TTTGCTTA 1 chr3L:18179943-18180063 ( 91) TTTGTTTA 1 chrX:13626020-13626140 ( 16) TTTGTTTA 1 chr3L:13986489-13986609 ( 48) TTTGTTTA 1 chr3R:11460884-11461004 ( 15) TTTGTTTA 1 chr3L:11400770-11400890 ( 85) TTTGTTTA 1 chr2L:18965718-18965838 ( 106) TTTGTTTA 1 chr2L:1636663-1636783 ( 85) TTTGTTGT 1 chr3R:20263840-20263960 ( 62) TTTGTTGT 1 chr3R:23181087-23181207 ( 38) TTTGTTGT 1 chrX:5745173-5745293 ( 51) TTGGCTTT 1 chr3R:15677449-15677569 ( 64) TTGGCTTT 1 chr2L:18658166-18658286 ( 59) TTTGTTGT 1 chr3L:16893777-16893897 ( 97) TTTGTTGT 1 chrX:11715511-11715631 ( 38) TTTGCTGA 1 chr3L:21011386-21011506 ( 113) TTTGCGTT 1 chr3R:14912738-14912858 ( 108) TTTGCGTT 1 chr2L:5117202-5117322 ( 95) TTGGTTTT 1 chr2L:1619312-1619432 ( 87) TTGGTTTT 1 chr2R:23740398-23740518 ( 55) TTTGTGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGYTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.66317 E= 3.5e+004 -1217 -1217 -1217 166 -1217 -1217 -1217 166 -1217 -1217 -99 152 -1217 -1217 253 -1217 -1217 131 -1217 83 -1217 -1217 -141 156 -1217 -1217 -41 145 -4 -1217 -1217 109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGYTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 3.5e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.086957 0.913043 0.000000 0.000000 1.000000 0.000000 0.000000 0.434783 0.000000 0.565217 0.000000 0.000000 0.065217 0.934783 0.000000 0.000000 0.130435 0.869565 0.326087 0.000000 0.000000 0.673913 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGYTTT MEME-5 regular expression -------------------------------------------------------------------------------- TTTG[TC]TT[TA] -------------------------------------------------------------------------------- Time 32.67 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:18965718-18965838 7.98e-02 120 chr3L:11400770-11400890 2.36e-01 120 chr3R:14912738-14912858 4.20e-01 120 chr2L:10822760-10822880 6.57e-01 120 chr3L:20823323-20823443 8.74e-01 120 chr3L:4445969-4446089 3.41e-01 120 chr3L:7866759-7866879 5.17e-02 120 chr2L:7778431-7778551 4.23e-01 120 chr3L:11317547-11317667 1.21e-01 28_[+5(3.07e-05)]_84 chr2R:17918920-17919040 1.49e-01 120 chr3R:18740806-18740926 6.52e-01 120 chr3L:16893777-16893897 6.83e-02 120 chrX:18125654-18125774 2.92e-01 120 chr2L:16519749-16519869 6.68e-01 120 chr2L:14501730-14501850 1.35e-01 120 chr2L:1619312-1619432 2.54e-01 120 chr3L:11556791-11556911 6.52e-01 120 chr3L:15741937-15742057 1.52e-01 120 chr2R:15515763-15515883 2.96e-01 81_[+5(3.07e-05)]_31 chr3R:4804863-4804983 5.02e-01 120 chr2L:243965-244085 6.36e-02 120 chrX:13632826-13632946 1.03e-01 120 chr3R:14711518-14711638 4.57e-01 120 chrX:22488489-22488609 7.60e-01 120 chr3L:17977745-17977865 3.40e-03 19_[+3(4.33e-05)]_79_[+2(6.33e-05)]_\ 6 chr2L:18658166-18658286 2.15e-01 120 chrX:515847-515967 3.18e-03 80_[+3(4.33e-05)]_5_[+3(4.33e-05)]_\ 19 chr3R:25448815-25448935 7.45e-01 120 chr2R:22199988-22200108 1.73e-03 24_[+1(2.43e-05)]_34_[+2(3.13e-05)]_\ 46 chr2R:22661271-22661391 1.62e-02 120 chr2R:19971480-19971600 8.23e-01 120 chr3L:11280834-11280954 2.09e-02 120 chrX:7704655-7704775 1.11e-01 39_[+5(8.64e-05)]_73 chr2R:14487663-14487783 1.76e-02 101_[+1(3.55e-05)]_11 chr3R:16981150-16981270 7.18e-01 120 chr3R:31369149-31369269 8.38e-01 120 chr3R:10186202-10186322 7.78e-01 120 chrX:4762427-4762547 9.55e-01 120 chr2L:9509698-9509818 4.14e-01 120 chr3R:9529723-9529843 3.10e-02 88_[+1(9.79e-06)]_24 chr3R:11460884-11461004 3.17e-01 120 chr3R:26242584-26242704 7.74e-02 120 chr3L:1549465-1549585 2.63e-01 120 chr3L:16657085-16657205 9.61e-01 120 chr3L:12045642-12045762 3.39e-02 120 chr2L:3323580-3323700 4.65e-01 120 chr3L:9695963-9696083 6.12e-02 120 chr2L:134848-134968 8.91e-02 120 chr3L:16714274-16714394 1.04e-05 3_[+1(6.63e-06)]_70_[+3(4.33e-05)]_\ 31 chr3L:11290034-11290154 1.65e-02 5_[+2(6.33e-05)]_107 chr2R:23656699-23656819 7.94e-01 120 chr2L:9614110-9614230 4.12e-02 120 chr3R:14054227-14054347 2.08e-02 120 chr4:1218950-1219070 9.30e-01 120 chr2L:18548818-18548938 1.04e-01 120 chr3L:4025870-4025990 9.59e-04 12_[+5(3.07e-05)]_32_[+3(4.33e-05)]_\ 14_[+5(3.07e-05)]_38 chr3R:9390336-9390456 3.06e-01 120 chr3L:10742320-10742440 7.85e-01 120 chr2R:15802022-15802142 1.23e-01 120 chr3L:13986489-13986609 4.58e-02 120 chr3R:6399413-6399533 1.71e-01 120 chrX:4457993-4458113 6.63e-01 120 chr3L:17808991-17809111 9.34e-04 92_[+2(4.57e-06)]_20 chr2R:9857216-9857336 9.20e-01 120 chr3R:19011011-19011131 4.66e-01 120 chr2L:18151914-18152034 4.14e-02 120 chr3R:6401135-6401255 2.56e-02 120 chr2L:9187576-9187696 2.98e-02 49_[+2(3.13e-05)]_63 chr2R:23740398-23740518 2.19e-03 120 chr3L:10827530-10827650 8.15e-01 120 chr2R:16845459-16845579 4.34e-01 120 chr2L:8634103-8634223 6.69e-01 120 chr3L:3406511-3406631 5.18e-02 2_[+5(3.07e-05)]_110 chr3R:8318051-8318171 9.15e-01 120 chr3R:23178212-23178332 1.62e-02 73_[+2(4.01e-05)]_39 chrX:278479-278599 4.46e-02 40_[+1(5.07e-05)]_72 chr2R:15846381-15846501 8.62e-01 120 chr2L:14483830-14483950 8.70e-01 120 chr2L:85230-85350 2.02e-02 56_[+2(4.01e-05)]_56 chr2L:18556454-18556574 6.37e-01 120 chr2R:9603348-9603468 5.34e-01 120 chr3L:11342587-11342707 1.85e-01 120 chr2L:2906246-2906366 8.60e-01 120 chr3R:5056249-5056369 1.24e-01 120 chr3R:21825244-21825364 4.87e-01 120 chr3R:15677449-15677569 5.72e-02 120 chr2R:22508126-22508246 8.93e-01 120 chr2L:5117202-5117322 5.04e-01 120 chr3R:21852574-21852694 4.43e-01 120 chr2R:10272890-10273010 1.80e-02 44_[+3(4.33e-05)]_68 chr2L:1048326-1048446 1.17e-02 7_[+2(6.91e-05)]_4_[+2(2.38e-05)]_\ 93 chr3L:9372737-9372857 1.15e-01 120 chr3R:14479757-14479877 2.28e-01 120 chr3R:15292441-15292561 8.12e-01 120 chr2R:13909090-13909210 2.84e-03 120 chr3L:15591390-15591510 4.06e-01 120 chr2R:9444273-9444393 9.32e-02 120 chr2R:18667112-18667232 1.76e-02 120 chr2R:23615222-23615342 5.42e-01 120 chr2L:1125494-1125614 3.96e-04 8_[+2(1.05e-05)]_79_[+1(5.98e-05)]_\ 17 chrX:13626020-13626140 3.78e-02 120 chr3L:17791661-17791781 2.44e-01 120 chr3R:14351491-14351611 9.02e-01 120 chr2R:7054325-7054445 9.96e-01 120 chr3R:16510291-16510411 8.54e-01 120 chr3L:17447883-17448003 8.34e-01 120 chr3L:11258515-11258635 1.70e-01 17_[+5(8.64e-05)]_95 chr2L:12509589-12509709 8.22e-01 120 chr3R:19151874-19151994 7.17e-02 52_[+3(4.33e-05)]_60 chr3L:3390647-3390767 1.48e-06 12_[+2(4.01e-05)]_75_[+4(1.57e-06)]_\ 1_[+1(9.79e-06)]_8 chr3R:19613077-19613197 2.56e-01 120 chrX:5745173-5745293 2.91e-03 24_[+1(5.98e-05)]_88 chr2L:3397770-3397890 2.34e-01 120 chr2L:18566782-18566902 7.53e-01 120 chr3R:9083526-9083646 9.96e-01 120 chr3L:18837931-18838051 6.81e-01 120 chr2R:22205711-22205831 8.77e-02 120 chr2R:13935259-13935379 7.98e-01 120 chr3R:15094248-15094368 1.40e-01 30_[+3(4.33e-05)]_82 chr3R:26494386-26494506 7.29e-01 120 chr3R:28556542-28556662 4.88e-01 120 chr3L:9468363-9468483 7.70e-01 120 chr3L:15275742-15275862 5.11e-02 120 chrX:6638278-6638398 3.23e-01 120 chr3L:18030031-18030151 8.67e-01 120 chr2L:2864694-2864814 3.63e-05 [+2(3.13e-05)]_79_[+5(3.07e-05)]_12_\ [+1(3.55e-05)]_5 chr3L:15814174-15814294 6.38e-02 120 chr3L:5188429-5188549 8.06e-01 120 chr3R:18508427-18508547 7.31e-01 120 chr2R:10079940-10080060 5.42e-01 120 chr3R:23803816-23803936 1.74e-01 120 chr2L:3092660-3092780 5.55e-01 120 chr3R:5031997-5032117 2.54e-03 47_[+5(8.64e-05)]_65 chrX:13676653-13676773 4.34e-01 120 chr2R:13482141-13482261 2.91e-01 98_[+5(8.64e-05)]_14 chr2L:16526562-16526682 9.42e-01 120 chr3L:17532402-17532522 3.59e-01 54_[+5(8.64e-05)]_58 chr3R:12562165-12562285 9.09e-01 120 chrX:19352922-19353042 4.51e-01 46_[+5(8.64e-05)]_66 chrX:5095748-5095868 9.92e-01 120 chr3R:14875806-14875926 6.34e-01 120 chr3L:11286777-11286897 6.54e-01 120 chr2R:15480294-15480414 2.34e-01 120 chr3L:15549060-15549180 3.95e-01 120 chrX:13320816-13320936 2.35e-01 12_[+5(8.64e-05)]_100 chrX:12889240-12889360 8.14e-05 61_[+2(7.48e-06)]_51 chr3R:7892830-7892950 9.48e-01 120 chr3L:6612753-6612873 6.40e-04 89_[+2(4.01e-05)]_23 chrX:13109793-13109913 7.83e-01 120 chrX:16385975-16386095 9.54e-01 120 chr3L:21205132-21205252 4.07e-01 120 chr3L:18179943-18180063 3.62e-01 120 chr3R:19924487-19924607 6.62e-01 120 chr3L:1738059-1738179 8.72e-01 120 chr2R:21549136-21549256 1.62e-01 47_[+2(7.95e-05)]_65 chr3R:28959180-28959300 2.57e-01 98_[+3(4.33e-05)]_14 chrX:15120204-15120324 8.27e-01 120 chr3L:7996541-7996661 1.28e-03 50_[+2(1.52e-06)]_62 chrX:8112871-8112991 3.81e-01 120 chr3L:8834955-8835075 2.86e-01 120 chr3L:10679951-10680071 6.48e-01 120 chr2L:14011875-14011995 2.92e-01 96_[+5(8.64e-05)]_16 chr3L:11580067-11580187 8.33e-01 120 chr2R:24139132-24139252 8.94e-01 120 chrX:7691478-7691598 1.23e-03 10_[+2(2.38e-05)]_102 chr3R:17955863-17955983 9.93e-01 120 chr3R:23181087-23181207 2.13e-01 120 chr3L:7262612-7262732 6.82e-01 120 chr2R:24745992-24746112 3.88e-04 4_[+1(2.43e-05)]_26_[+1(5.98e-05)]_\ 74 chr2R:19137957-19138077 9.31e-03 74_[+1(2.60e-05)]_38 chr3R:6760870-6760990 4.28e-01 120 chr2L:8461958-8462078 9.95e-01 120 chr2L:8165915-8166035 2.17e-02 72_[+3(4.33e-05)]_40 chr3L:21011386-21011506 5.95e-01 120 chr3L:3519011-3519131 8.86e-02 120 chr3R:18438899-18439019 1.75e-01 120 chr2L:18678386-18678506 4.94e-01 120 chr2L:19019226-19019346 9.07e-01 120 chr2R:17085651-17085771 1.81e-01 120 chr2L:9775381-9775501 1.64e-01 66_[+2(6.33e-05)]_46 chr3L:21042499-21042619 3.36e-01 120 chr2R:18202769-18202889 4.48e-02 [+5(8.64e-05)]_112 chrX:9135198-9135318 3.27e-01 42_[+5(8.64e-05)]_70 chr2R:9660238-9660358 1.00e+00 120 chr3L:14274817-14274937 2.95e-04 39_[+1(6.63e-06)]_73 chr3R:26280515-26280635 3.13e-01 120 chr2R:14305268-14305388 9.81e-01 120 chr3L:6216063-6216183 5.59e-02 33_[+5(3.07e-05)]_79 chr3L:7782365-7782485 8.23e-01 120 chr3R:6406402-6406522 4.17e-01 120 chr3L:3932921-3933041 1.65e-01 120 chrX:11391725-11391845 5.81e-01 120 chr3R:10520561-10520681 6.62e-01 120 chrX:17507361-17507481 2.90e-01 120 chr3L:16150053-16150173 5.46e-01 120 chr2L:14377100-14377220 9.06e-01 120 chrX:8493578-8493698 9.83e-01 120 chr3R:24544476-24544596 2.72e-02 120 chr2L:13461003-13461123 1.00e+00 120 chr2R:10194996-10195116 9.30e-01 120 chr3R:17605235-17605355 5.86e-01 120 chr3L:16054310-16054430 9.72e-01 120 chr3R:23284424-23284544 4.86e-01 120 chr3R:21187071-21187191 8.21e-01 120 chr2R:16848424-16848544 4.83e-01 120 chr3R:15093013-15093133 3.25e-01 120 chr2R:18811973-18812093 6.40e-01 120 chr3L:11292339-11292459 3.05e-06 1_[+4(4.69e-06)]_21_[+4(5.72e-05)]_\ 16_[+2(1.05e-05)]_58 chr3R:21176711-21176831 2.84e-01 120 chrX:16580061-16580181 1.20e-01 120 chrX:14634861-14634981 8.66e-01 120 chr2R:13586440-13586560 1.54e-01 104_[+3(4.33e-05)]_8 chr2L:20079059-20079179 3.74e-03 37_[+1(2.43e-05)]_75 chr3R:25168368-25168488 8.87e-01 120 chr3R:21420079-21420199 8.93e-01 120 chr3L:4122652-4122772 3.16e-01 20_[+5(8.64e-05)]_92 chrX:17830475-17830595 9.09e-01 120 chr2R:6464959-6465079 4.28e-01 120 chrX:16573817-16573937 1.56e-02 3_[+5(3.07e-05)]_109 chr2L:19930229-19930349 7.39e-01 120 chr3R:25445889-25446009 3.58e-01 120 chr2L:10986354-10986474 4.59e-01 120 chr2L:2857965-2858085 7.15e-06 32_[+4(1.57e-06)]_54_[+2(4.87e-05)]_\ 18 chr2L:14376891-14377011 7.62e-01 120 chr3L:18997202-18997322 1.60e-01 68_[+5(8.64e-05)]_44 chrX:11715511-11715631 1.73e-02 120 chr2R:9309631-9309751 3.14e-01 120 chr3L:21034261-21034381 8.42e-01 120 chr3R:20263840-20263960 1.88e-04 16_[+2(4.01e-05)]_96 chr2L:3228824-3228944 1.12e-01 107_[+3(4.33e-05)]_5 chr2L:1636663-1636783 4.33e-02 120 chr2R:15134301-15134421 3.68e-01 120 chr3L:8741326-8741446 1.81e-02 120 chrX:17582810-17582930 4.65e-01 120 chr3R:5042474-5042594 1.79e-01 120 chr3L:11528567-11528687 4.51e-04 95_[+1(1.48e-05)]_17 chr2L:22036995-22037115 1.16e-01 120 chr3L:10866754-10866874 2.02e-01 120 chr2L:1094878-1094998 2.45e-01 120 chr3R:26105970-26106090 5.46e-01 120 chr3R:22878493-22878613 9.51e-01 120 chr2R:22062450-22062570 1.26e-01 120 chr2L:3058246-3058366 7.31e-07 3_[+1(6.63e-06)]_26_[+2(1.50e-05)]_\ 8_[+1(5.07e-05)]_44_[+1(2.43e-05)]_7 chr3R:29089784-29089904 4.01e-01 120 chrX:2591692-2591812 5.86e-01 120 chr2L:20807735-20807855 1.78e-01 120 chr2R:23578604-23578724 8.49e-01 120 chr2R:14077595-14077715 1.86e-01 85_[+3(4.33e-05)]_[+3(4.33e-05)]_19 chr3R:29068860-29068980 3.28e-01 120 chr2L:14440969-14441089 4.19e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************