******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG14965.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:23258434-23258554 1.0000 120 chr2L:11904314-11904434 1.0000 120 chr2L:9464832-9464952 1.0000 120 chr2L:10459129-10459249 1.0000 120 chr3L:22223239-22223359 1.0000 120 chr2R:11408277-11408397 1.0000 120 chr3L:11892914-11893034 1.0000 120 chrX:13204853-13204973 1.0000 120 chr3L:14925744-14925864 1.0000 120 chr2R:18473370-18473490 1.0000 120 chrX:2388096-2388216 1.0000 120 chrX:4293539-4293659 1.0000 120 chr3R:6970681-6970801 1.0000 120 chr3L:18235532-18235652 1.0000 120 chr3L:11876199-11876319 1.0000 120 chr3L:8323958-8324078 1.0000 120 chr2R:11410854-11410974 1.0000 120 chr3L:15267845-15267965 1.0000 120 chr2L:12603505-12603625 1.0000 120 chr2L:4418159-4418279 1.0000 120 chr3R:7304575-7304695 1.0000 120 chrX:14910749-14910869 1.0000 120 chrX:16746954-16747074 1.0000 120 chr3R:25591650-25591770 1.0000 120 chrX:11081939-11082059 1.0000 120 chr3R:25112670-25112790 1.0000 120 chrX:6253803-6253923 1.0000 120 chr2L:10615206-10615326 1.0000 120 chrX:2659615-2659735 1.0000 120 chrX:17532376-17532496 1.0000 120 chr2R:7104639-7104759 1.0000 120 chrX:13401367-13401487 1.0000 120 chr2L:15438760-15438880 1.0000 120 chrX:21565677-21565797 1.0000 120 chr3R:6854474-6854594 1.0000 120 chr2L:15949602-15949722 1.0000 120 chr3L:10281959-10282079 1.0000 120 chr3R:6870885-6871005 1.0000 120 chr2R:19468995-19469115 1.0000 120 chr3L:15268056-15268176 1.0000 120 chr3R:25591857-25591977 1.0000 120 chr3L:10271717-10271837 1.0000 120 chr3L:16407855-16407975 1.0000 120 chr3R:6973355-6973475 1.0000 120 chr3L:15893638-15893758 1.0000 120 chr3R:29716139-29716259 1.0000 120 chr3L:18032837-18032957 1.0000 120 chr3L:18968696-18968816 1.0000 120 chr3R:21179754-21179874 1.0000 120 chr2R:10207878-10207998 1.0000 120 chr3R:11312533-11312653 1.0000 120 chr2L:20464496-20464616 1.0000 120 chr3R:27228480-27228600 1.0000 120 chrX:3311457-3311577 1.0000 120 chrX:17870769-17870889 1.0000 120 chr3L:3769321-3769441 1.0000 120 chr3R:16782501-16782621 1.0000 120 chr3R:5300739-5300859 1.0000 120 chr3L:9333839-9333959 1.0000 120 chrX:1401697-1401817 1.0000 120 chrX:6110020-6110140 1.0000 120 chr3R:26956511-26956631 1.0000 120 chrX:14910142-14910262 1.0000 120 chr3R:10203687-10203807 1.0000 120 chr3R:29087590-29087710 1.0000 120 chr3L:19132744-19132864 1.0000 120 chrX:2659817-2659937 1.0000 120 chr3L:508049-508169 1.0000 120 chr2L:16743077-16743197 1.0000 120 chr3L:10886041-10886161 1.0000 120 chr3R:31134161-31134281 1.0000 120 chrX:9286532-9286652 1.0000 120 chr2L:6357090-6357210 1.0000 120 chr2R:23878945-23879065 1.0000 120 chr3L:16769984-16770104 1.0000 120 chr3L:12526943-12527063 1.0000 120 chr2L:19426204-19426324 1.0000 120 chrX:16967553-16967673 1.0000 120 chrX:4530015-4530135 1.0000 120 chr2R:13959605-13959725 1.0000 120 chr4:406905-407025 1.0000 120 chr3L:18114514-18114634 1.0000 120 chrX:2340159-2340279 1.0000 120 chr3R:16834772-16834892 1.0000 120 chr3R:14832398-14832518 1.0000 120 chr2R:19543806-19543926 1.0000 120 chr2L:21904302-21904422 1.0000 120 chr2L:12603708-12603828 1.0000 120 chr2R:18514014-18514134 1.0000 120 chrX:16105818-16105938 1.0000 120 chr2L:10425815-10425935 1.0000 120 chr4:404468-404588 1.0000 120 chrX:1772739-1772859 1.0000 120 chr3L:10271922-10272042 1.0000 120 chr2R:13362459-13362579 1.0000 120 chr2L:14432668-14432788 1.0000 120 chr3R:26539272-26539392 1.0000 120 chr2R:20906660-20906780 1.0000 120 chr2R:23097117-23097237 1.0000 120 chr2R:20126358-20126478 1.0000 120 chr2L:15249271-15249391 1.0000 120 chr3L:520970-521090 1.0000 120 chr3L:8324158-8324278 1.0000 120 chr2R:22387649-22387769 1.0000 120 chrX:17870989-17871109 1.0000 120 chr3R:25851282-25851402 1.0000 120 chr2L:19949754-19949874 1.0000 120 chr3R:23331442-23331562 1.0000 120 chr3R:18988111-18988231 1.0000 120 chr3L:20954285-20954405 1.0000 120 chr3L:10285019-10285139 1.0000 120 chr3L:959474-959594 1.0000 120 chr2R:11716513-11716633 1.0000 120 chr3L:3767944-3768064 1.0000 120 chr2R:21323911-21324031 1.0000 120 chrX:3741189-3741309 1.0000 120 chrX:4507253-4507373 1.0000 120 chr4:68790-68910 1.0000 120 chr2L:9775345-9775465 1.0000 120 chr2R:7167874-7167994 1.0000 120 chr2R:21323712-21323832 1.0000 120 chr3L:5988855-5988975 1.0000 120 chr3R:19096344-19096464 1.0000 120 chr2L:7635326-7635446 1.0000 120 chrX:17720355-17720475 1.0000 120 chr3R:10665049-10665169 1.0000 120 chr3L:11408683-11408803 1.0000 120 chr3L:3818896-3819016 1.0000 120 chrX:7162659-7162779 1.0000 120 chr2L:8611012-8611132 1.0000 120 chr3R:16748661-16748781 1.0000 120 chr3L:17981218-17981338 1.0000 120 chr2R:22511597-22511717 1.0000 120 chr3L:3305608-3305728 1.0000 120 chr3L:21484010-21484130 1.0000 120 chr3L:8584240-8584360 1.0000 120 chr2L:14545498-14545618 1.0000 120 chrX:4498420-4498540 1.0000 120 chr2R:21134557-21134677 1.0000 120 chr2L:6700768-6700888 1.0000 120 chr3L:19140490-19140610 1.0000 120 chr2R:6133335-6133455 1.0000 120 chr3R:31134360-31134480 1.0000 120 chr3L:20944330-20944450 1.0000 120 chr2L:7984967-7985087 1.0000 120 chr3R:10622342-10622462 1.0000 120 chr3R:26568541-26568661 1.0000 120 chr3L:642948-643068 1.0000 120 chr3R:23176579-23176699 1.0000 120 chr2L:7239439-7239559 1.0000 120 chr3L:3875118-3875238 1.0000 120 chr2R:19997558-19997678 1.0000 120 chr2R:9006902-9007022 1.0000 120 chr2R:23725984-23726104 1.0000 120 chr3R:5299133-5299253 1.0000 120 chr2L:20807771-20807891 1.0000 120 chr3L:20711557-20711677 1.0000 120 chr3L:13189414-13189534 1.0000 120 chr3R:6818789-6818909 1.0000 120 chr2L:7339755-7339875 1.0000 120 chr3R:13999706-13999826 1.0000 120 chrX:22837559-22837679 1.0000 120 chr3R:9870068-9870188 1.0000 120 chr2R:11636031-11636151 1.0000 120 chr3R:22596616-22596736 1.0000 120 chr3L:16412435-16412555 1.0000 120 chr2R:11639761-11639881 1.0000 120 chrX:13563581-13563701 1.0000 120 chrX:10582169-10582289 1.0000 120 chr3L:2531432-2531552 1.0000 120 chr3R:4970797-4970917 1.0000 120 chr2L:5261358-5261478 1.0000 120 chr3R:14017783-14017903 1.0000 120 chr2R:15565289-15565409 1.0000 120 chr3R:26654724-26654844 1.0000 120 chr2R:15147729-15147849 1.0000 120 chrX:16782255-16782375 1.0000 120 chr3R:20948069-20948189 1.0000 120 chr3R:10675306-10675426 1.0000 120 chr3R:23723707-23723827 1.0000 120 chr3R:21854142-21854262 1.0000 120 chrX:6614375-6614495 1.0000 120 chr3L:5974702-5974822 1.0000 120 chr3L:3300453-3300573 1.0000 120 chr3R:20542381-20542501 1.0000 120 chr3R:8812665-8812785 1.0000 120 chr3L:14762247-14762367 1.0000 120 chr3R:18439448-18439568 1.0000 120 chr3R:22147650-22147770 1.0000 120 chr3R:25453431-25453551 1.0000 120 chr2R:8943757-8943877 1.0000 120 chr3R:31169045-31169165 1.0000 120 chr3R:11269155-11269275 1.0000 120 chr3R:23314511-23314631 1.0000 120 chr3R:25515527-25515647 1.0000 120 chr2R:9183591-9183711 1.0000 120 chr3L:18403361-18403481 1.0000 120 chrX:2318312-2318432 1.0000 120 chr3R:31395370-31395490 1.0000 120 chrX:1845550-1845670 1.0000 120 chr3R:15089768-15089888 1.0000 120 chr2L:18567677-18567797 1.0000 120 chr3R:4659756-4659876 1.0000 120 chr3L:18226083-18226203 1.0000 120 chr3L:12083924-12084044 1.0000 120 chrX:14633332-14633452 1.0000 120 chr3R:30021879-30021999 1.0000 120 chr3R:16261011-16261131 1.0000 120 chr2R:17892977-17893097 1.0000 120 chr3L:17653587-17653707 1.0000 120 chr2L:6323645-6323765 1.0000 120 chr3L:5447270-5447390 1.0000 120 chr3L:19933015-19933135 1.0000 120 chr2R:13539725-13539845 1.0000 120 chr2L:16534199-16534319 1.0000 120 chr3L:21604421-21604541 1.0000 120 chr3R:22356699-22356819 1.0000 120 chr3R:7346588-7346708 1.0000 120 chr3R:31551055-31551175 1.0000 120 chr3L:1690946-1691066 1.0000 120 chr2L:12371874-12371994 1.0000 120 chr3L:16409293-16409413 1.0000 120 chr2R:6512424-6512544 1.0000 120 chr3L:1029781-1029901 1.0000 120 chr2L:4350837-4350957 1.0000 120 chr3L:11120101-11120221 1.0000 120 chr3L:3862542-3862662 1.0000 120 chr3R:18311686-18311806 1.0000 120 chr2L:16486532-16486652 1.0000 120 chrX:1854171-1854291 1.0000 120 chr3R:28329279-28329399 1.0000 120 chr3L:8072791-8072911 1.0000 120 chr3L:14634328-14634448 1.0000 120 chr2R:9303023-9303143 1.0000 120 chr3R:10643281-10643401 1.0000 120 chr2L:9633253-9633373 1.0000 120 chr2L:17243507-17243627 1.0000 120 chr3L:2475961-2476081 1.0000 120 chr3L:5869758-5869878 1.0000 120 chr2R:22538107-22538227 1.0000 120 chr2R:21607942-21608062 1.0000 120 chr3L:2466635-2466755 1.0000 120 chrX:1953050-1953170 1.0000 120 chr3L:563148-563268 1.0000 120 chr3L:18848561-18848681 1.0000 120 chr2L:20974377-20974497 1.0000 120 chr2R:14130454-14130574 1.0000 120 chr3R:11613291-11613411 1.0000 120 chr2R:7776713-7776833 1.0000 120 chr2L:16350222-16350342 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG14965/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG14965.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.276 C 0.218 G 0.224 T 0.283 Background letter frequencies (from file dataset with add-one prior applied): A 0.276 C 0.218 G 0.224 T 0.283 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGCCAYC MEME-1 width = 8 sites = 68 llr = 604 E-value = 7.6e-042 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::1:7:1 pos.-specific C 1a:9a259 probability G 7:a::1:: matrix T 1:::::5: bits 2.2 ** * 2.0 ** * 1.8 **** * 1.5 **** * Relative 1.3 **** * Entropy 1.1 **** ** (12.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCCACC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:20948069-20948189 113 6.82e-06 TGCTTATACA GCGCCACC chr3L:2531432-2531552 31 6.82e-06 TTTGCCACTG GCGCCACC TGTTGTTGGG chrX:13563581-13563701 5 6.82e-06 CGTG GCGCCACC TATGACGAGC chrX:14910142-14910262 46 6.82e-06 ATTCAGGTTA GCGCCACC TGGCGGTCAG chr2R:10207878-10207998 42 6.82e-06 CCGGCAGGGG GCGCCACC GGCGGCAGGA chr3R:21179754-21179874 32 6.82e-06 ATGTTCTACA GCGCCACC TGTCGAACTG chr3L:15893638-15893758 48 6.82e-06 CAGTTAGCTA GCGCCACC AAGCGGGCGA chrX:21565677-21565797 46 6.82e-06 GTCTGCAGTG GCGCCACC TGACGGGAGG chrX:17532376-17532496 80 6.82e-06 ACTCAAAGAA GCGCCACC TTTCGTTTTC chrX:2659615-2659735 41 6.82e-06 TCTGCCACAA GCGCCACC TGGCGGCAAG chr3L:11892914-11893034 53 6.82e-06 ACTTAGTGTG GCGCCACC TGGGGAGCGG chrX:1953050-1953170 67 1.57e-05 CAGTTGGCTG GCGCCATC TGTGCAGCAG chr3R:7346588-7346708 62 1.57e-05 ACACTTTTTG GCGCCATC TATGTATATT chr3L:16412435-16412555 9 1.57e-05 ACTGCAAA GCGCCATC TGGGAGGGAG chrX:4507253-4507373 61 1.57e-05 CAACGAACGG GCGCCATC TATGGGACGG chr3L:3767944-3768064 31 1.57e-05 TCTCTGAGTG GCGCCATC TGTGGTCGAG chrX:16105818-16105938 46 1.57e-05 AATATGTGAA GCGCCATC CAGCGGATAG chr3R:16834772-16834892 96 1.57e-05 GAGCACATTG GCGCCATC TGTATTCCGT chrX:4530015-4530135 33 1.57e-05 CACGCTAGCA GCGCCATC TGACGGGGCA chr3R:31134161-31134281 29 1.57e-05 AGTCAGCCAG GCGCCATC TATTGGCAGG chr3R:16782501-16782621 65 1.57e-05 ATTGACCCGC GCGCCATC TAGCGGCATG chr3R:29716139-29716259 27 1.57e-05 CGATGCACTG GCGCCATC TGTTGCTGAG chr2R:19468995-19469115 93 1.57e-05 GCTCAGTGTG GCGCCATC TAGTaaccag chrX:13401367-13401487 58 1.57e-05 AGAATTGTAA GCGCCATC TATCGGTTGG chr2R:7104639-7104759 43 1.57e-05 GTGCCACGCA GCGCCATC TTGTGTCGCG chr3R:7304575-7304695 25 1.57e-05 TCATGATGCG GCGCCATC TCGCGTGCGG chr3L:11876199-11876319 69 1.57e-05 TGCAGATGTG GCGCCATC TGGCGGGCGA chr3R:10665049-10665169 17 2.11e-05 TGAGAGAGTG GCGCCCCC AAGCGGTCGG chr3L:19132744-19132864 34 2.11e-05 GAGCTGTAGA GCGCCCCC TGGCGGTGGG chr3L:14925744-14925864 48 2.11e-05 CACAACAGCA GCGCCCCC ATGCGGCGAG chr3L:16409293-16409413 21 3.36e-05 TTATTAATGG GCGCCGCC TTCAATGTGG chr3R:11269155-11269275 21 3.36e-05 TTTAATAGTA GCGCCCTC TGTTGTTTGG chr2R:23097117-23097237 53 3.36e-05 TGGATGACAG GCGCCCTC TGGCGGTTGG chr2R:13362459-13362579 77 3.36e-05 TCGCTAGGTG GCGCCGCC AGTAGTGTGA chr3L:10886041-10886161 94 3.36e-05 TTCCGGAAAA GCGCCCTC TGGCGCTACT chr3L:10281959-10282079 40 3.36e-05 CTCTTTGACA GCGCCCTC TAGCGTAGAG chr2R:11410854-11410974 69 3.36e-05 AAACATTTTA GCGCCCTC TAGTGTTAGG chr2L:10459129-10459249 39 3.36e-05 CTGTTCAGTG GCGCCCTC TACAACAACT chr2R:23258434-23258554 51 3.36e-05 CGCCGCAGAA GCGCCCTC TGCCGGCCAG chrX:17870769-17870889 10 4.22e-05 TGATCATGT TCGCCACC TGGCGGCAAG chr3R:25112670-25112790 86 4.22e-05 ACTCTTTCCA TCGCCACC TGTTGTCAGG chr2L:21904302-21904422 31 4.94e-05 GTCGAAAGTA GCGCCGTC GCCCTCTACC chr2R:11716513-11716633 92 6.06e-05 TACCTTCAAC TCGCCATC GTCTCATCGA chr2R:18514014-18514134 56 6.06e-05 CGCGTTACAA TCGCCATC TGTCGGGCGG chrX:16967553-16967673 83 6.92e-05 TCGGCAGGGG GCGCCACA ACGACGTCCT chrX:6110020-6110140 86 6.92e-05 ACGCCAGGTG GCGCCACA CATGTAGTAA chr2L:10615206-10615326 78 6.92e-05 CCGCTAGGGG GCGCCACA CCGGATCGCA chr3R:6970681-6970801 66 6.92e-05 GCGCTCAGTG GCGCCACA CGTGGCTGGT chr3R:18311686-18311806 88 7.58e-05 ACCCCACCTT CCGCCACC ATCGGCCTTT chr3R:10622342-10622462 66 7.58e-05 CCATTCGAAC CCGCCACC ATTATGCCAT chr3L:20711557-20711677 20 1.04e-04 AGGAGTTGGT GCGACACC TAGCGCTTGG chr3R:5299133-5299253 44 1.04e-04 GTGAGCATGA GCGACACC TGGCGGCAGA chr3L:21484010-21484130 27 1.04e-04 GTTTTTAGTG GCGACACC TACCGCCTTC chrX:7162659-7162779 33 1.04e-04 TGACCACCAA ACGCCACC TGTTGGCCGG chr3L:9333839-9333959 32 1.04e-04 CGTAATTAAG ACGCCACC TGTTCGGCTA chr2L:4418159-4418279 19 1.04e-04 ATGCCAGCAG ACGCCACC TAGCGGACGG chr3L:22223239-22223359 30 1.04e-04 TATCAGAAGA GCGCCATA ATGCAGTGGC chr3R:16748661-16748781 92 1.13e-04 CAACTCAGTG CCGCCATC TGACGTAAGA chr2L:16486532-16486652 34 1.42e-04 GCGCTCTCGC TCGCCCCC ATGGGCGACG chr2R:20906660-20906780 23 1.42e-04 ACACATTGCA GCGACATC TATCGTCAAA chr3L:16769984-16770104 57 1.42e-04 AATGGCCAAG ACGCCATC TGGCGATAGG chr3R:26956511-26956631 58 1.42e-04 GTGAGCAGCA GCGACATC TTGCGGTGGG chr3R:26568541-26568661 45 1.57e-04 TTTGGCCCAC TCGCCGCC TGCTTTAGTC chr2L:12603708-12603828 50 1.57e-04 CCCGTCTCAT TCGCCGCC TTGCAGTGTT chr2R:13959605-13959725 65 1.79e-04 GTACTGGAGG Tcgccgtc gttgctgccg chr3R:10643281-10643401 91 2.31e-04 GTTTGCCTTT TCGCCACA GAGACTGTGT chrX:1401697-1401817 18 2.31e-04 CTTTGCTGCA CCGCCGCC GAGCTTTTTC chr2L:15949602-15949722 52 2.31e-04 CCTCGACTGC TCGCCACA AGATGGCGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:20948069-20948189 6.8e-06 112_[+1] chr3L:2531432-2531552 6.8e-06 30_[+1]_82 chrX:13563581-13563701 6.8e-06 4_[+1]_108 chrX:14910142-14910262 6.8e-06 45_[+1]_67 chr2R:10207878-10207998 6.8e-06 41_[+1]_71 chr3R:21179754-21179874 6.8e-06 31_[+1]_81 chr3L:15893638-15893758 6.8e-06 47_[+1]_65 chrX:21565677-21565797 6.8e-06 45_[+1]_67 chrX:17532376-17532496 6.8e-06 79_[+1]_33 chrX:2659615-2659735 6.8e-06 40_[+1]_72 chr3L:11892914-11893034 6.8e-06 52_[+1]_60 chrX:1953050-1953170 1.6e-05 66_[+1]_46 chr3R:7346588-7346708 1.6e-05 61_[+1]_51 chr3L:16412435-16412555 1.6e-05 8_[+1]_104 chrX:4507253-4507373 1.6e-05 60_[+1]_52 chr3L:3767944-3768064 1.6e-05 30_[+1]_82 chrX:16105818-16105938 1.6e-05 45_[+1]_67 chr3R:16834772-16834892 1.6e-05 95_[+1]_17 chrX:4530015-4530135 1.6e-05 32_[+1]_80 chr3R:31134161-31134281 1.6e-05 28_[+1]_84 chr3R:16782501-16782621 1.6e-05 64_[+1]_48 chr3R:29716139-29716259 1.6e-05 26_[+1]_86 chr2R:19468995-19469115 1.6e-05 92_[+1]_20 chrX:13401367-13401487 1.6e-05 57_[+1]_55 chr2R:7104639-7104759 1.6e-05 42_[+1]_70 chr3R:7304575-7304695 1.6e-05 24_[+1]_88 chr3L:11876199-11876319 1.6e-05 68_[+1]_44 chr3R:10665049-10665169 2.1e-05 16_[+1]_96 chr3L:19132744-19132864 2.1e-05 33_[+1]_79 chr3L:14925744-14925864 2.1e-05 47_[+1]_65 chr3L:16409293-16409413 3.4e-05 20_[+1]_92 chr3R:11269155-11269275 3.4e-05 20_[+1]_92 chr2R:23097117-23097237 3.4e-05 52_[+1]_60 chr2R:13362459-13362579 3.4e-05 76_[+1]_36 chr3L:10886041-10886161 3.4e-05 93_[+1]_19 chr3L:10281959-10282079 3.4e-05 39_[+1]_73 chr2R:11410854-11410974 3.4e-05 68_[+1]_44 chr2L:10459129-10459249 3.4e-05 38_[+1]_74 chr2R:23258434-23258554 3.4e-05 50_[+1]_62 chrX:17870769-17870889 4.2e-05 9_[+1]_103 chr3R:25112670-25112790 4.2e-05 85_[+1]_27 chr2L:21904302-21904422 4.9e-05 30_[+1]_82 chr2R:11716513-11716633 6.1e-05 91_[+1]_21 chr2R:18514014-18514134 6.1e-05 55_[+1]_57 chrX:16967553-16967673 6.9e-05 82_[+1]_30 chrX:6110020-6110140 6.9e-05 85_[+1]_27 chr2L:10615206-10615326 6.9e-05 77_[+1]_35 chr3R:6970681-6970801 6.9e-05 65_[+1]_47 chr3R:18311686-18311806 7.6e-05 87_[+1]_25 chr3R:10622342-10622462 7.6e-05 65_[+1]_47 chr3L:20711557-20711677 0.0001 19_[+1]_93 chr3R:5299133-5299253 0.0001 43_[+1]_69 chr3L:21484010-21484130 0.0001 26_[+1]_86 chrX:7162659-7162779 0.0001 32_[+1]_80 chr3L:9333839-9333959 0.0001 31_[+1]_81 chr2L:4418159-4418279 0.0001 18_[+1]_94 chr3L:22223239-22223359 0.0001 29_[+1]_83 chr3R:16748661-16748781 0.00011 91_[+1]_21 chr2L:16486532-16486652 0.00014 33_[+1]_79 chr2R:20906660-20906780 0.00014 22_[+1]_90 chr3L:16769984-16770104 0.00014 56_[+1]_56 chr3R:26956511-26956631 0.00014 57_[+1]_55 chr3R:26568541-26568661 0.00016 44_[+1]_68 chr2L:12603708-12603828 0.00016 49_[+1]_63 chr2R:13959605-13959725 0.00018 64_[+1]_48 chr3R:10643281-10643401 0.00023 90_[+1]_22 chrX:1401697-1401817 0.00023 17_[+1]_95 chr2L:15949602-15949722 0.00023 51_[+1]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCAYC width=8 seqs=68 chr3R:20948069-20948189 ( 113) GCGCCACC 1 chr3L:2531432-2531552 ( 31) GCGCCACC 1 chrX:13563581-13563701 ( 5) GCGCCACC 1 chrX:14910142-14910262 ( 46) GCGCCACC 1 chr2R:10207878-10207998 ( 42) GCGCCACC 1 chr3R:21179754-21179874 ( 32) GCGCCACC 1 chr3L:15893638-15893758 ( 48) GCGCCACC 1 chrX:21565677-21565797 ( 46) GCGCCACC 1 chrX:17532376-17532496 ( 80) GCGCCACC 1 chrX:2659615-2659735 ( 41) GCGCCACC 1 chr3L:11892914-11893034 ( 53) GCGCCACC 1 chrX:1953050-1953170 ( 67) GCGCCATC 1 chr3R:7346588-7346708 ( 62) GCGCCATC 1 chr3L:16412435-16412555 ( 9) GCGCCATC 1 chrX:4507253-4507373 ( 61) GCGCCATC 1 chr3L:3767944-3768064 ( 31) GCGCCATC 1 chrX:16105818-16105938 ( 46) GCGCCATC 1 chr3R:16834772-16834892 ( 96) GCGCCATC 1 chrX:4530015-4530135 ( 33) GCGCCATC 1 chr3R:31134161-31134281 ( 29) GCGCCATC 1 chr3R:16782501-16782621 ( 65) GCGCCATC 1 chr3R:29716139-29716259 ( 27) GCGCCATC 1 chr2R:19468995-19469115 ( 93) GCGCCATC 1 chrX:13401367-13401487 ( 58) GCGCCATC 1 chr2R:7104639-7104759 ( 43) GCGCCATC 1 chr3R:7304575-7304695 ( 25) GCGCCATC 1 chr3L:11876199-11876319 ( 69) GCGCCATC 1 chr3R:10665049-10665169 ( 17) GCGCCCCC 1 chr3L:19132744-19132864 ( 34) GCGCCCCC 1 chr3L:14925744-14925864 ( 48) GCGCCCCC 1 chr3L:16409293-16409413 ( 21) GCGCCGCC 1 chr3R:11269155-11269275 ( 21) GCGCCCTC 1 chr2R:23097117-23097237 ( 53) GCGCCCTC 1 chr2R:13362459-13362579 ( 77) GCGCCGCC 1 chr3L:10886041-10886161 ( 94) GCGCCCTC 1 chr3L:10281959-10282079 ( 40) GCGCCCTC 1 chr2R:11410854-11410974 ( 69) GCGCCCTC 1 chr2L:10459129-10459249 ( 39) GCGCCCTC 1 chr2R:23258434-23258554 ( 51) GCGCCCTC 1 chrX:17870769-17870889 ( 10) TCGCCACC 1 chr3R:25112670-25112790 ( 86) TCGCCACC 1 chr2L:21904302-21904422 ( 31) GCGCCGTC 1 chr2R:11716513-11716633 ( 92) TCGCCATC 1 chr2R:18514014-18514134 ( 56) TCGCCATC 1 chrX:16967553-16967673 ( 83) GCGCCACA 1 chrX:6110020-6110140 ( 86) GCGCCACA 1 chr2L:10615206-10615326 ( 78) GCGCCACA 1 chr3R:6970681-6970801 ( 66) GCGCCACA 1 chr3R:18311686-18311806 ( 88) CCGCCACC 1 chr3R:10622342-10622462 ( 66) CCGCCACC 1 chr3L:20711557-20711677 ( 20) GCGACACC 1 chr3R:5299133-5299253 ( 44) GCGACACC 1 chr3L:21484010-21484130 ( 27) GCGACACC 1 chrX:7162659-7162779 ( 33) ACGCCACC 1 chr3L:9333839-9333959 ( 32) ACGCCACC 1 chr2L:4418159-4418279 ( 19) ACGCCACC 1 chr3L:22223239-22223359 ( 30) GCGCCATA 1 chr3R:16748661-16748781 ( 92) CCGCCATC 1 chr2L:16486532-16486652 ( 34) TCGCCCCC 1 chr2R:20906660-20906780 ( 23) GCGACATC 1 chr3L:16769984-16770104 ( 57) ACGCCATC 1 chr3R:26956511-26956631 ( 58) GCGACATC 1 chr3R:26568541-26568661 ( 45) TCGCCGCC 1 chr2L:12603708-12603828 ( 50) TCGCCGCC 1 chr2R:13959605-13959725 ( 65) TCGCCGTC 1 chr3R:10643281-10643401 ( 91) TCGCCACA 1 chrX:1401697-1401817 ( 18) CCGCCGCC 1 chr2L:15949602-15949722 ( 52) TCGCCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8592 E= 7.6e-042 -223 -189 172 -94 -1273 220 -1273 -1273 -1273 -1273 216 -1273 -191 209 -1273 -1273 -1273 220 -1273 -1273 142 -43 -112 -1273 -1273 128 -1273 73 -142 204 -1273 -1273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 7.6e-042 0.058824 0.058824 0.735294 0.147059 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.073529 0.926471 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.735294 0.161765 0.102941 0.000000 0.000000 0.529412 0.000000 0.470588 0.102941 0.897059 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCAYC MEME-1 regular expression -------------------------------------------------------------------------------- GCGCCA[CT]C -------------------------------------------------------------------------------- Time 9.08 secs. ******************************************************************************** ******************************************************************************** MOTIF AGRTGGCG MEME-2 width = 8 sites = 55 llr = 482 E-value = 2.1e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGRTGGCG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 916::::: pos.-specific C ::1:::a: probability G 1932a9:9 matrix T :::8:1:1 bits 2.2 * * 2.0 * * 1.8 * *** 1.5 * **** Relative 1.3 ** **** Entropy 1.1 ** ***** (12.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGATGGCG consensus GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTGGCG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5869758-5869878 38 1.18e-05 CTCGACCAGC AGATGGCG TTTCGTAGCT chr3R:4970797-4970917 81 1.18e-05 AGTCTGCCAT AGATGGCG TTGAATTGAG chr3R:16748661-16748781 70 1.18e-05 CCGAATCCAT AGATGGCG CATGCAACTC chrX:7162659-7162779 74 1.18e-05 GTTGGCCCAT AGATGGCG ACAGTATGCT chr3L:10285019-10285139 74 1.18e-05 GTTTGCACAT AGATGGCG CTAGATGCTA chr2R:20906660-20906780 93 1.18e-05 TACCAACGGT AGATGGCG CCAGTGCAAC chrX:1772739-1772859 28 1.18e-05 AACAGTCACC AGATGGCG CTACATATGT chr3L:12526943-12527063 74 1.18e-05 ACTGACCGCC AGATGGCG CGTTTCAATT chr2L:16743077-16743197 72 1.18e-05 ACTAGCCAGC AGATGGCG CTGGTGAAGT chr3R:10203687-10203807 85 1.18e-05 GCCTGACAAC AGATGGCG CTTTGTATCA chrX:3311457-3311577 87 1.18e-05 CGCTCACGCT AGATGGCG CTGCAATGCC chr2L:20464496-20464616 45 1.18e-05 AACAAACGCC AGATGGCG TTAAAGGCAC chr3L:16407855-16407975 44 1.18e-05 TCCGGCCGCT AGATGGCG CTCATGACAT chr2L:15949602-15949722 60 1.18e-05 GCTCGCCACA AGATGGCG CTGTGCACTT chrX:11081939-11082059 55 1.18e-05 TCTGAACGCC AGATGGCG CTCGCTTATC chrX:4293539-4293659 99 1.18e-05 TCTGGCCCAC AGATGGCG CTCTGTCATC chr3R:7346588-7346708 107 2.14e-05 TTCGAGTAGT AGGTGGCG TTATCA chr3L:520970-521090 43 2.14e-05 ACCTGCCACC AGGTGGCG CCTCAGACAG chrX:9286532-9286652 54 2.14e-05 GCTCGCCCAC AGGTGGCG CCAGCAATGG chr3R:29087590-29087710 54 2.14e-05 ACTAACCGCC AGGTGGCG CTGTTAATGT chr3L:3769321-3769441 21 2.14e-05 TCCTTTCCAA AGGTGGCG TCCTAGTGCC chrX:6253803-6253923 66 2.14e-05 TCCAAACGCT AGGTGGCG CCAGGGGAGT chr3L:15267845-15267965 64 2.14e-05 ACCAAGCAGT AGGTGGCG CTTTACATAC chrX:1953050-1953170 96 3.08e-05 CACCAGACAT AGAGGGCG CCAGAGGTTG chr3R:14017783-14017903 55 3.08e-05 agagagagag agagggcg agagagaacc chr2R:19997558-19997678 41 3.08e-05 TACGCCCAGC AGAGGGCG CCACTCTCTC chr3L:9333839-9333959 103 3.08e-05 AACATCCCCA AGAGGGCG ACACTTGGAG chr3R:5300739-5300859 21 3.08e-05 TGGCCCTAAT AGAGGGCG TGGGCATTGT chrX:16746954-16747074 40 3.08e-05 GCCGACCGCC AGAGGGCG TCACTTCGCT chrX:2388096-2388216 67 3.08e-05 ACCGTCCAAC AGAGGGCG TTGTGTGAAA chr3R:11312533-11312653 55 3.84e-05 ACCCGGCAAT AGGGGGCG TCTTTCTAAG chr2R:19468995-19469115 58 3.84e-05 GCCGCCCGCA AGGGGGCG GCACCTGCGC chrX:13563581-13563701 63 4.77e-05 AACCGCCGAC AGCTGGCG ATTTAAGCTT chr3L:1690946-1691066 13 5.73e-05 TTTCTGGCGG GGATGGCG CGGGCGGATG chr2L:11904314-11904434 75 5.73e-05 ACGAGCCGCA GGATGGCG CCTCTCAAAA chr2L:12603505-12603625 84 7.23e-05 ACTCAACGCC AGATGGCT TCAAGCAATT chr3L:18235532-18235652 43 7.23e-05 TACAAACGCC AGATGGCT TTTACTTTTA chr2L:10459129-10459249 67 7.23e-05 ACCAGGCACC AGATGGCT TCTGCTTCGA chr2L:9464832-9464952 40 7.23e-05 GCCAAATGAT AGATGGCT CTAAGAAGTT chr3R:25515527-25515647 60 1.10e-04 CTGTCTCCCC AAATGGCG TTTTTTGAGC chr3R:19096344-19096464 70 1.10e-04 AAATTCCCAG AGATGTCG GTTTCTGGGA chr3L:18114514-18114634 51 1.10e-04 GTCATCTACC GGGTGGCG TTGGTCTTTC chr4:406905-407025 72 1.10e-04 AACAAATCAC AGATGTCG CTTTGATACT chr3L:1029781-1029901 67 1.22e-04 AATGACTGGC AGGTGGCT AGAGTCtttt chr3R:11613291-11613411 47 1.46e-04 ATCTGAGCTG AAGTGGCG CTTTCGTTTA chr2L:6323645-6323765 10 1.46e-04 TTGAAACAG AAGTGGCG CCACTAGCGT chr3R:16261011-16261131 27 1.46e-04 TTTGGCCCTT AGGTGTCG CTTCATTAGG chr3R:23331442-23331562 64 1.46e-04 ACTGTCCGCC AGGTGTCG CTACTAAGCC chrX:2659615-2659735 56 1.46e-04 ACCTGGCGGC AAGTGGCG GCAGAAGCAG chr3L:15893638-15893758 57 1.53e-04 AGCGCCACCA AGCGGGCG ACAGACGGAC chr2R:18473370-18473490 64 1.53e-04 GGCGCTGCTA AGCGGGCG GTAGCGGCAA chr3R:27228480-27228600 80 1.75e-04 AGCCACAATC AGATGGCA GCTTTTATCT chr3L:22223239-22223359 106 1.75e-04 GCAATGGACG AGATGGCA AGTCGCG chrX:3741189-3741309 76 2.38e-04 ACTGGCCGCT GGGGGGCG CTAATTTGCC chr3L:11892914-11893034 68 2.74e-04 ACCTGGGGAG CGGTGGCG GTAGCTTAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTGGCG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5869758-5869878 1.2e-05 37_[+2]_75 chr3R:4970797-4970917 1.2e-05 80_[+2]_32 chr3R:16748661-16748781 1.2e-05 69_[+2]_43 chrX:7162659-7162779 1.2e-05 73_[+2]_39 chr3L:10285019-10285139 1.2e-05 73_[+2]_39 chr2R:20906660-20906780 1.2e-05 92_[+2]_20 chrX:1772739-1772859 1.2e-05 27_[+2]_85 chr3L:12526943-12527063 1.2e-05 73_[+2]_39 chr2L:16743077-16743197 1.2e-05 71_[+2]_41 chr3R:10203687-10203807 1.2e-05 84_[+2]_28 chrX:3311457-3311577 1.2e-05 86_[+2]_26 chr2L:20464496-20464616 1.2e-05 44_[+2]_68 chr3L:16407855-16407975 1.2e-05 43_[+2]_69 chr2L:15949602-15949722 1.2e-05 59_[+2]_53 chrX:11081939-11082059 1.2e-05 54_[+2]_58 chrX:4293539-4293659 1.2e-05 98_[+2]_14 chr3R:7346588-7346708 2.1e-05 106_[+2]_6 chr3L:520970-521090 2.1e-05 42_[+2]_70 chrX:9286532-9286652 2.1e-05 53_[+2]_59 chr3R:29087590-29087710 2.1e-05 53_[+2]_59 chr3L:3769321-3769441 2.1e-05 20_[+2]_92 chrX:6253803-6253923 2.1e-05 65_[+2]_47 chr3L:15267845-15267965 2.1e-05 63_[+2]_49 chrX:1953050-1953170 3.1e-05 95_[+2]_17 chr3R:14017783-14017903 3.1e-05 54_[+2]_58 chr2R:19997558-19997678 3.1e-05 40_[+2]_72 chr3L:9333839-9333959 3.1e-05 102_[+2]_10 chr3R:5300739-5300859 3.1e-05 20_[+2]_92 chrX:16746954-16747074 3.1e-05 39_[+2]_73 chrX:2388096-2388216 3.1e-05 66_[+2]_46 chr3R:11312533-11312653 3.8e-05 54_[+2]_58 chr2R:19468995-19469115 3.8e-05 57_[+2]_55 chrX:13563581-13563701 4.8e-05 62_[+2]_50 chr3L:1690946-1691066 5.7e-05 12_[+2]_100 chr2L:11904314-11904434 5.7e-05 74_[+2]_38 chr2L:12603505-12603625 7.2e-05 83_[+2]_29 chr3L:18235532-18235652 7.2e-05 42_[+2]_70 chr2L:10459129-10459249 7.2e-05 66_[+2]_46 chr2L:9464832-9464952 7.2e-05 39_[+2]_73 chr3R:25515527-25515647 0.00011 59_[+2]_53 chr3R:19096344-19096464 0.00011 69_[+2]_43 chr3L:18114514-18114634 0.00011 50_[+2]_62 chr4:406905-407025 0.00011 71_[+2]_41 chr3L:1029781-1029901 0.00012 66_[+2]_46 chr3R:11613291-11613411 0.00015 46_[+2]_66 chr2L:6323645-6323765 0.00015 9_[+2]_103 chr3R:16261011-16261131 0.00015 26_[+2]_86 chr3R:23331442-23331562 0.00015 63_[+2]_49 chrX:2659615-2659735 0.00015 55_[+2]_57 chr3L:15893638-15893758 0.00015 56_[+2]_56 chr2R:18473370-18473490 0.00015 63_[+2]_49 chr3R:27228480-27228600 0.00018 79_[+2]_33 chr3L:22223239-22223359 0.00018 105_[+2]_7 chrX:3741189-3741309 0.00024 75_[+2]_37 chr3L:11892914-11893034 0.00027 67_[+2]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTGGCG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGRTGGCG width=8 seqs=55 chr3L:5869758-5869878 ( 38) AGATGGCG 1 chr3R:4970797-4970917 ( 81) AGATGGCG 1 chr3R:16748661-16748781 ( 70) AGATGGCG 1 chrX:7162659-7162779 ( 74) AGATGGCG 1 chr3L:10285019-10285139 ( 74) AGATGGCG 1 chr2R:20906660-20906780 ( 93) AGATGGCG 1 chrX:1772739-1772859 ( 28) AGATGGCG 1 chr3L:12526943-12527063 ( 74) AGATGGCG 1 chr2L:16743077-16743197 ( 72) AGATGGCG 1 chr3R:10203687-10203807 ( 85) AGATGGCG 1 chrX:3311457-3311577 ( 87) AGATGGCG 1 chr2L:20464496-20464616 ( 45) AGATGGCG 1 chr3L:16407855-16407975 ( 44) AGATGGCG 1 chr2L:15949602-15949722 ( 60) AGATGGCG 1 chrX:11081939-11082059 ( 55) AGATGGCG 1 chrX:4293539-4293659 ( 99) AGATGGCG 1 chr3R:7346588-7346708 ( 107) AGGTGGCG 1 chr3L:520970-521090 ( 43) AGGTGGCG 1 chrX:9286532-9286652 ( 54) AGGTGGCG 1 chr3R:29087590-29087710 ( 54) AGGTGGCG 1 chr3L:3769321-3769441 ( 21) AGGTGGCG 1 chrX:6253803-6253923 ( 66) AGGTGGCG 1 chr3L:15267845-15267965 ( 64) AGGTGGCG 1 chrX:1953050-1953170 ( 96) AGAGGGCG 1 chr3R:14017783-14017903 ( 55) AGAGGGCG 1 chr2R:19997558-19997678 ( 41) AGAGGGCG 1 chr3L:9333839-9333959 ( 103) AGAGGGCG 1 chr3R:5300739-5300859 ( 21) AGAGGGCG 1 chrX:16746954-16747074 ( 40) AGAGGGCG 1 chrX:2388096-2388216 ( 67) AGAGGGCG 1 chr3R:11312533-11312653 ( 55) AGGGGGCG 1 chr2R:19468995-19469115 ( 58) AGGGGGCG 1 chrX:13563581-13563701 ( 63) AGCTGGCG 1 chr3L:1690946-1691066 ( 13) GGATGGCG 1 chr2L:11904314-11904434 ( 75) GGATGGCG 1 chr2L:12603505-12603625 ( 84) AGATGGCT 1 chr3L:18235532-18235652 ( 43) AGATGGCT 1 chr2L:10459129-10459249 ( 67) AGATGGCT 1 chr2L:9464832-9464952 ( 40) AGATGGCT 1 chr3R:25515527-25515647 ( 60) AAATGGCG 1 chr3R:19096344-19096464 ( 70) AGATGTCG 1 chr3L:18114514-18114634 ( 51) GGGTGGCG 1 chr4:406905-407025 ( 72) AGATGTCG 1 chr3L:1029781-1029901 ( 67) AGGTGGCT 1 chr3R:11613291-11613411 ( 47) AAGTGGCG 1 chr2L:6323645-6323765 ( 10) AAGTGGCG 1 chr3R:16261011-16261131 ( 27) AGGTGTCG 1 chr3R:23331442-23331562 ( 64) AGGTGTCG 1 chrX:2659615-2659735 ( 56) AAGTGGCG 1 chr3L:15893638-15893758 ( 57) AGCGGGCG 1 chr2R:18473370-18473490 ( 64) AGCGGGCG 1 chr3R:27228480-27228600 ( 80) AGATGGCA 1 chr3L:22223239-22223359 ( 106) AGATGGCA 1 chrX:3741189-3741309 ( 76) GGGGGGCG 1 chr3L:11892914-11893034 ( 68) CGGTGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTGGCG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2119 E= 2.1e-023 172 -358 -162 -1243 -192 -1243 205 -1243 117 -200 55 -1243 -1243 -1243 -4 147 -1243 -1243 216 -1243 -1243 -1243 205 -196 -1243 220 -1243 -1243 -292 -1243 196 -164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTGGCG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 2.1e-023 0.909091 0.018182 0.072727 0.000000 0.072727 0.000000 0.927273 0.000000 0.618182 0.054545 0.327273 0.000000 0.000000 0.000000 0.218182 0.781818 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.927273 0.072727 0.000000 1.000000 0.000000 0.000000 0.036364 0.000000 0.872727 0.090909 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGRTGGCG MEME-2 regular expression -------------------------------------------------------------------------------- AG[AG][TG]GGCG -------------------------------------------------------------------------------- Time 15.25 secs. ******************************************************************************** ******************************************************************************** MOTIF CWGCDGCH MEME-3 width = 8 sites = 47 llr = 385 E-value = 1.7e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWGCDGCH MEME-3 Description -------------------------------------------------------------------------------- Simplified A :5::4::4 pos.-specific C a::a1:a4 probability G :2a:2a:: matrix T :3::2::3 bits 2.2 * ** ** 2.0 * ** ** 1.8 * ** ** 1.5 * ** ** Relative 1.3 * ** ** Entropy 1.1 * ** ** (11.8 bits) 0.9 * ** ** 0.7 * ** ** 0.4 **** *** 0.2 **** *** 0.0 -------- Multilevel CAGCAGCA consensus T G C sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCDGCH MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1953050-1953170 79 8.63e-06 GCCATCTGTG CAGCAGCC ACCAGACATA chr3R:29716139-29716259 67 8.63e-06 TGCAATGCAA CAGCAGCC GACAACAAAC chr3R:14017783-14017903 75 1.96e-05 agagaaccaa cagcagca gagctaggga chr3L:3305608-3305728 93 1.96e-05 AATATTTGAG CAGCAGCA TTTAATATTT chr3R:26539272-26539392 77 1.96e-05 GTAAACAAGC CAGCAGCA ATCGGACATA chr2R:19543806-19543926 78 1.96e-05 GCTGCTTCAG CAGCAGCA GCATCCACAG chrX:2659817-2659937 15 1.96e-05 CGCAGTCGAA CAGCAGCA GCGAGAGCCT chrX:21565677-21565797 113 2.84e-05 TGGCTCGTCA CTGCAGCC chr2L:16350222-16350342 55 4.66e-05 GAAGAAGAAG CAGCAGCT GTGCTGCAGC chr3R:30021879-30021999 70 4.66e-05 ACACACATAC CAGCAGCT GCTACGGCCG chr2L:18567677-18567797 64 4.66e-05 GCAAATCAAA CAGCAGCT GACGATGGGT chr2L:15249271-15249391 45 4.66e-05 GCTGATTGGC CAGCAGCT GAAGCACCTG chrX:9286532-9286652 39 4.66e-05 CCAGTGTTGG CAGCAGCT CGCCCACAGG chr3R:31169045-31169165 40 7.37e-05 CCCCACTCAT CAGCTGCC GCTGGAAAAC chr3R:21854142-21854262 20 7.37e-05 TGTGTCGAAA CTGCAGCA GGAATAAAAA chr2R:22511597-22511717 54 7.37e-05 GGAGCTGCAA CAGCTGCC TTGGCAGCCA chr2L:6357090-6357210 55 7.37e-05 CATTGCGTTT CAGCTGCC GGAAGATAGA chr2R:10207878-10207998 69 7.37e-05 ACACATCCGG CGGCAGCC GCATCCTCGG chr2L:9464832-9464952 25 7.37e-05 AATTTCATTT CAGCTGCC AAATGATAGA chr3R:22356699-22356819 105 8.94e-05 GCACGGTAAC CAGCCGCC AATACCGA chr3L:15893638-15893758 2 8.94e-05 C CAGCGGCA GCACGCAGTG chrX:2659615-2659735 103 8.94e-05 TCAGCCAGGA CAGCGGCA TCGAAAATGG chr3L:14925744-14925864 75 8.94e-05 GTGGCGGTAG CAGCGGCA CACATACACT chrX:1854171-1854291 4 1.08e-04 CAC CTGCGGCC AAAAGCTGTA chr2L:12371874-12371994 12 1.08e-04 AAGAGAAGAG CTGCGGCC GACAGGCGGG chr2R:13539725-13539845 54 1.08e-04 CTTGTTGATT CTGCGGCC CAAACAAACA chr3R:10622342-10622462 35 1.08e-04 CCGTGGGCTT CTGCGGCC GAAGGGGTGG chr3R:21179754-21179874 47 1.08e-04 ACCTGTCGAA CTGCAGCT AAAACTGCTT chr2L:15949602-15949722 84 1.08e-04 ACTTACTTTT CTGCAGCT TGACAGCGCT chr3L:20944330-20944450 61 1.37e-04 AACAAATGAG CGGCAGCA GGCAGAATAA chr2R:6133335-6133455 45 1.37e-04 GTGGGGACGG CAGCGGCT TGGTGTCGGG chr2R:20126358-20126478 91 1.37e-04 ACAAAGCAAA CAGCTGCA CTGAGGAAAA chr3R:5300739-5300859 88 1.37e-04 GCCCGTGGAG CGGCAGCA ACGGTATAAG chr2R:23725984-23726104 14 1.55e-04 TTTCGGCGCA CTGCTGCC GTCTCGCTCG chr2L:10615206-10615326 61 1.55e-04 TCAGTCCGTG CTGCTGCC CGCTAGGGGG chr3R:10665049-10665169 32 1.97e-04 CCCAAGCGGT CGGCGGCC GTACCTCACT chr2R:13959605-13959725 25 1.97e-04 AGAGCTGCAT CAGCTGCT GCTGCGACAT chr3L:19132744-19132864 108 1.97e-04 TTCTTGCCAT CTGCCGCC ATTTC chr2R:7104639-7104759 67 1.97e-04 CGCGTAGTGG CGGCAGCT GCGCCAAACA chr3L:2466635-2466755 61 2.56e-04 TTTCCAACTT CTGCCGCA CTGGCGCTTT chr2R:9183591-9183711 8 2.56e-04 GATACTG CGGCGGCA GAGCGATACT chr3L:3767944-3768064 75 2.56e-04 CTTGCTTTGC CTGCCGCA AGCAGCTCAA chr3L:11120101-11120221 80 2.68e-04 CAACGTATAG CTGCTGCT CTTTGCTTTT chr3R:18439448-18439568 19 2.93e-04 TTGTTGCTGC CTGCCGCT GACGTTTGAC chr3L:16769984-16770104 91 3.00e-04 CATTTTTTTC CGGCCGCA AGTCAAAGCC chr3R:7304575-7304695 56 3.00e-04 CCGCAACTCT CGGCCGCA AAAggacacg chr3L:22223239-22223359 54 3.09e-04 TGGCATGTTT CGGCTGCT GTCCGCCAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCDGCH MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1953050-1953170 8.6e-06 78_[+3]_34 chr3R:29716139-29716259 8.6e-06 66_[+3]_46 chr3R:14017783-14017903 2e-05 74_[+3]_38 chr3L:3305608-3305728 2e-05 92_[+3]_20 chr3R:26539272-26539392 2e-05 76_[+3]_36 chr2R:19543806-19543926 2e-05 77_[+3]_35 chrX:2659817-2659937 2e-05 14_[+3]_98 chrX:21565677-21565797 2.8e-05 112_[+3] chr2L:16350222-16350342 4.7e-05 54_[+3]_58 chr3R:30021879-30021999 4.7e-05 69_[+3]_43 chr2L:18567677-18567797 4.7e-05 63_[+3]_49 chr2L:15249271-15249391 4.7e-05 44_[+3]_68 chrX:9286532-9286652 4.7e-05 38_[+3]_74 chr3R:31169045-31169165 7.4e-05 39_[+3]_73 chr3R:21854142-21854262 7.4e-05 19_[+3]_93 chr2R:22511597-22511717 7.4e-05 53_[+3]_59 chr2L:6357090-6357210 7.4e-05 54_[+3]_58 chr2R:10207878-10207998 7.4e-05 68_[+3]_44 chr2L:9464832-9464952 7.4e-05 24_[+3]_88 chr3R:22356699-22356819 8.9e-05 104_[+3]_8 chr3L:15893638-15893758 8.9e-05 1_[+3]_111 chrX:2659615-2659735 8.9e-05 102_[+3]_10 chr3L:14925744-14925864 8.9e-05 74_[+3]_38 chrX:1854171-1854291 0.00011 3_[+3]_109 chr2L:12371874-12371994 0.00011 11_[+3]_101 chr2R:13539725-13539845 0.00011 53_[+3]_59 chr3R:10622342-10622462 0.00011 34_[+3]_78 chr3R:21179754-21179874 0.00011 46_[+3]_66 chr2L:15949602-15949722 0.00011 83_[+3]_29 chr3L:20944330-20944450 0.00014 60_[+3]_52 chr2R:6133335-6133455 0.00014 44_[+3]_68 chr2R:20126358-20126478 0.00014 90_[+3]_22 chr3R:5300739-5300859 0.00014 87_[+3]_25 chr2R:23725984-23726104 0.00015 13_[+3]_99 chr2L:10615206-10615326 0.00015 60_[+3]_52 chr3R:10665049-10665169 0.0002 31_[+3]_81 chr2R:13959605-13959725 0.0002 24_[+3]_88 chr3L:19132744-19132864 0.0002 107_[+3]_5 chr2R:7104639-7104759 0.0002 66_[+3]_46 chr3L:2466635-2466755 0.00026 60_[+3]_52 chr2R:9183591-9183711 0.00026 7_[+3]_105 chr3L:3767944-3768064 0.00026 74_[+3]_38 chr3L:11120101-11120221 0.00027 79_[+3]_33 chr3R:18439448-18439568 0.00029 18_[+3]_94 chr3L:16769984-16770104 0.0003 90_[+3]_22 chr3R:7304575-7304695 0.0003 55_[+3]_57 chr3L:22223239-22223359 0.00031 53_[+3]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCDGCH MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWGCDGCH width=8 seqs=47 chrX:1953050-1953170 ( 79) CAGCAGCC 1 chr3R:29716139-29716259 ( 67) CAGCAGCC 1 chr3R:14017783-14017903 ( 75) CAGCAGCA 1 chr3L:3305608-3305728 ( 93) CAGCAGCA 1 chr3R:26539272-26539392 ( 77) CAGCAGCA 1 chr2R:19543806-19543926 ( 78) CAGCAGCA 1 chrX:2659817-2659937 ( 15) CAGCAGCA 1 chrX:21565677-21565797 ( 113) CTGCAGCC 1 chr2L:16350222-16350342 ( 55) CAGCAGCT 1 chr3R:30021879-30021999 ( 70) CAGCAGCT 1 chr2L:18567677-18567797 ( 64) CAGCAGCT 1 chr2L:15249271-15249391 ( 45) CAGCAGCT 1 chrX:9286532-9286652 ( 39) CAGCAGCT 1 chr3R:31169045-31169165 ( 40) CAGCTGCC 1 chr3R:21854142-21854262 ( 20) CTGCAGCA 1 chr2R:22511597-22511717 ( 54) CAGCTGCC 1 chr2L:6357090-6357210 ( 55) CAGCTGCC 1 chr2R:10207878-10207998 ( 69) CGGCAGCC 1 chr2L:9464832-9464952 ( 25) CAGCTGCC 1 chr3R:22356699-22356819 ( 105) CAGCCGCC 1 chr3L:15893638-15893758 ( 2) CAGCGGCA 1 chrX:2659615-2659735 ( 103) CAGCGGCA 1 chr3L:14925744-14925864 ( 75) CAGCGGCA 1 chrX:1854171-1854291 ( 4) CTGCGGCC 1 chr2L:12371874-12371994 ( 12) CTGCGGCC 1 chr2R:13539725-13539845 ( 54) CTGCGGCC 1 chr3R:10622342-10622462 ( 35) CTGCGGCC 1 chr3R:21179754-21179874 ( 47) CTGCAGCT 1 chr2L:15949602-15949722 ( 84) CTGCAGCT 1 chr3L:20944330-20944450 ( 61) CGGCAGCA 1 chr2R:6133335-6133455 ( 45) CAGCGGCT 1 chr2R:20126358-20126478 ( 91) CAGCTGCA 1 chr3R:5300739-5300859 ( 88) CGGCAGCA 1 chr2R:23725984-23726104 ( 14) CTGCTGCC 1 chr2L:10615206-10615326 ( 61) CTGCTGCC 1 chr3R:10665049-10665169 ( 32) CGGCGGCC 1 chr2R:13959605-13959725 ( 25) CAGCTGCT 1 chr3L:19132744-19132864 ( 108) CTGCCGCC 1 chr2R:7104639-7104759 ( 67) CGGCAGCT 1 chr3L:2466635-2466755 ( 61) CTGCCGCA 1 chr2R:9183591-9183711 ( 8) CGGCGGCA 1 chr3L:3767944-3768064 ( 75) CTGCCGCA 1 chr3L:11120101-11120221 ( 80) CTGCTGCT 1 chr3R:18439448-18439568 ( 19) CTGCCGCT 1 chr3L:16769984-16770104 ( 91) CGGCCGCA 1 chr3R:7304575-7304695 ( 56) CGGCCGCA 1 chr3L:22223239-22223359 ( 54) CGGCTGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCDGCH MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.13 E= 1.7e-003 -1220 220 -1220 -1220 83 -1220 -22 17 -1220 -1220 216 -1220 -1220 220 -1220 -1220 63 -55 -7 -41 -1220 -1220 216 -1220 -1220 220 -1220 -1220 39 73 -1220 -3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCDGCH MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 1.7e-003 0.000000 1.000000 0.000000 0.000000 0.489362 0.000000 0.191489 0.319149 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.425532 0.148936 0.212766 0.212766 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.361702 0.361702 0.000000 0.276596 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWGCDGCH MEME-3 regular expression -------------------------------------------------------------------------------- C[AT]GC[AGT]GC[ACT] -------------------------------------------------------------------------------- Time 21.24 secs. ******************************************************************************** ******************************************************************************** MOTIF AAACAAAH MEME-4 width = 8 sites = 66 llr = 495 E-value = 8.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAACAAAH MEME-4 Description -------------------------------------------------------------------------------- Simplified A aaa2a984 pos.-specific C :::6:113 probability G ::::::1: matrix T :::2:::3 bits 2.2 2.0 1.8 *** * 1.5 *** ** Relative 1.3 *** ** Entropy 1.1 *** ** (10.8 bits) 0.9 *** *** 0.7 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel AAACAAAA consensus A C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAH MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:18567677-18567797 37 2.66e-05 TATAAACCGT AAACAAAA ATTATTGTTG chr3R:9870068-9870188 85 2.66e-05 TGTATTGTCC AAACAAAA GTCTTGCATC chr3R:23331442-23331562 100 2.66e-05 ATCATGTATA AAACAAAA AAATACGTTT chr3R:26956511-26956631 83 2.66e-05 GGGAGCCTGC AAACAAAA AGCGAGGTGC chr2L:12603505-12603625 104 2.66e-05 AAGCAATTTC AAACAAAA GCTCCAATT chr2R:6512424-6512544 99 4.76e-05 CCAAGACATA AAACAAAC CAAACATCCA chr2R:13539725-13539845 63 4.76e-05 TCTGCGGCCC AAACAAAC AGGAATTGCA chrX:2318312-2318432 101 4.76e-05 CTTGGTCGGC AAACAAAC CCTCTCTTTT chr3R:31169045-31169165 59 4.76e-05 CTGGAAAACT AAACAAAC GAAGTCCAAT chr2R:22511597-22511717 33 4.76e-05 ATCGTTGGAA AAACAAAC AGAGGAGCTG chr2R:7167874-7167994 94 4.76e-05 TTTTAATAAT AAACAAAC ACGAGCACAA chr2L:9775345-9775465 8 4.76e-05 aaaaaaa aaacaaac aaTTATCCAC chr3L:8323958-8324078 3 4.76e-05 GC AAACAAAC GACCAGGCCA chr2L:9464832-9464952 96 4.76e-05 GACAAGTCCG AAACAAAC GTGCAGTTCA chr2L:16486532-16486652 60 7.49e-05 CGCCTTATAT AAACAAAT GACAATTGTT chr3R:25453431-25453551 74 7.49e-05 GTGGCGACCA AAACAAAT GCATAATTAT chr3L:5974702-5974822 49 7.49e-05 CTGGAATCAA AAACAAAT AACATATGCG chr2R:15565289-15565409 10 7.49e-05 GATAAGTAT AAACAAAT TAGCAAGATT chr3L:20944330-20944450 50 7.49e-05 CAACAATGGC AAACAAAT GAGCGGCAGC chr4:406905-407025 61 7.49e-05 GCAAATATAA AAACAAAT CACAGATGTC chr2L:15438760-15438880 62 7.49e-05 CCTTATGCAA AAACAAAT CAAAACAGCA chr3L:563148-563268 14 1.09e-04 GAAGAAAACT AAAAAAAA ACCTATCGAG chr2L:4350837-4350957 49 1.09e-04 GATTGTTTTG AAAAAAAA TCGATTCTTA chr3R:22356699-22356819 16 1.09e-04 GCTTATGATT AAAAAAAA CTGAACTGAC chr3L:3875118-3875238 15 1.09e-04 ATATGCCACC AAAAAAAA AGAAGCTTCA chr3L:19140490-19140610 112 1.09e-04 TCGTCTTCGT AAAAAAAA G chrX:4507253-4507373 113 1.09e-04 CTGTGGTGGC AAAAAAAA chr3R:18988111-18988231 29 1.09e-04 CACAGTCCGA AAAAAAAA TGAAAGAATG chr2L:14432668-14432788 41 1.09e-04 gaacaacgag aaaaaaaa GGTTGTTAAA chrX:4530015-4530135 14 1.09e-04 TCTTTCCCAA AAAAAAAA ACACGCTAGC chr3L:14634328-14634448 17 1.70e-04 CAAAAAAAGG AAATAAAA TGAGAAGAGC chr3L:14762247-14762367 60 1.70e-04 CCAGATGGAT AAATAAAA TCCACTGTGT chr2R:15147729-15147849 103 1.70e-04 CAGAAGGGCC AAATAAAA CTACCAATTA chr3L:16409293-16409413 43 2.04e-04 ATGTGGTGTG AAAAAAAT ATGCATTCGG chrX:16782255-16782375 84 2.04e-04 GCAACACTGG AAAAAAAT GTTTCAAGCA chr2R:18514014-18514134 31 2.04e-04 ATATAAAATT AAAAAAAT GGTCACACGC chr2R:14130454-14130574 83 2.53e-04 AAAACGAGAG AAACAAGA GCCACACAGT chr2L:17243507-17243627 32 2.53e-04 GATCTCTTTA AAATAAAC TTTAAATGGG chr2L:12371874-12371994 78 2.53e-04 GGCCATGTAC AAACAAGA AGCCATCAGC chr3L:17653587-17653707 80 2.53e-04 AATATGAATT AAATAAAC AAGTACACCG chrX:10582169-10582289 85 2.53e-04 TTTGGAAACT AAACAAGA AAATATTGAC chr3R:26539272-26539392 57 2.53e-04 TGCAGCTGGT AAATAAAC AAGTAAACAA chr3R:25515527-25515647 89 2.74e-04 ACTTCGCCGC AAACAACA ACGCGCTCTC chr3R:23314511-23314631 72 2.74e-04 acagctagta aaacaaca acGCCAGGTT chr3R:21854142-21854262 35 2.74e-04 GCAGGAATAA AAACAACA ATCAAGAAAA chr2R:20126358-20126478 107 2.74e-04 CACTGAGGAA AAACAACA GCGAGT chr2L:9633253-9633373 90 3.27e-04 TTTTACTACA AAATAAAT ACGCACCGCA chr3R:15089768-15089888 108 3.27e-04 GTAAAATTCC AAATAAAT AAAGT chr3R:19096344-19096464 56 3.27e-04 GGGCGGTGGC AAATAAAT TCCCAGAGAT chr2L:19949754-19949874 58 3.27e-04 GGGGAAATGT AAACAAGC TCAAAACTTT chr2L:20464496-20464616 2 3.27e-04 G AAATAAAT TTCCCACTTC chr3R:11312533-11312653 101 3.27e-04 ACAGTCTGAG AAATAAAT GAGGGTTGCT chrX:6253803-6253923 106 3.27e-04 ATCATATACT AAATAAAT ATATGCA chr2R:22387649-22387769 76 3.43e-04 TGGCCTACAA AAACAACC AGAGTCAATT chr3L:2466635-2466755 44 3.65e-04 CAAACCATCG AAACAAGT TTCCAACTTC chr3L:8584240-8584360 54 3.87e-04 TTGTTTACAG AAACAACT GAACAAATAT chrX:1953050-1953170 15 4.29e-04 AACGCCATCA AAACAAAG GCAGCACGCC chr3R:22147650-22147770 49 4.29e-04 ACACGTTGGT AAACAAAG GGCAAGGAAC chr2R:6133335-6133455 3 4.29e-04 GA AAACACAA AATATCAACA chrX:17870989-17871109 69 4.29e-04 CGACAAATGT AAACACAA AGTGGGAAGA chr3L:11120101-11120221 45 4.46e-04 GTCTCTTTGT AAACACAC AAAAAGCACA chr2L:20807771-20807891 40 4.46e-04 TACAGCAGGC AAACACAC CCACTTTGTG chr3L:3300453-3300573 24 4.73e-04 TGCACTCATA AAAAAAGA GTTCATCGAG chr3R:8812665-8812785 1 5.21e-04 . AAAAAACA GAAACATCAA chr3R:10665049-10665169 82 5.43e-04 AAAAGGAATG AAAAAAGC AGCATTCACC chr3L:9333839-9333959 63 5.43e-04 ATTGAACTTG AAAAAAGC TTTGAGGGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAH MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:18567677-18567797 2.7e-05 36_[+4]_76 chr3R:9870068-9870188 2.7e-05 84_[+4]_28 chr3R:23331442-23331562 2.7e-05 99_[+4]_13 chr3R:26956511-26956631 2.7e-05 82_[+4]_30 chr2L:12603505-12603625 2.7e-05 103_[+4]_9 chr2R:6512424-6512544 4.8e-05 98_[+4]_14 chr2R:13539725-13539845 4.8e-05 62_[+4]_50 chrX:2318312-2318432 4.8e-05 100_[+4]_12 chr3R:31169045-31169165 4.8e-05 58_[+4]_54 chr2R:22511597-22511717 4.8e-05 32_[+4]_80 chr2R:7167874-7167994 4.8e-05 93_[+4]_19 chr2L:9775345-9775465 4.8e-05 7_[+4]_105 chr3L:8323958-8324078 4.8e-05 2_[+4]_110 chr2L:9464832-9464952 4.8e-05 95_[+4]_17 chr2L:16486532-16486652 7.5e-05 59_[+4]_53 chr3R:25453431-25453551 7.5e-05 73_[+4]_39 chr3L:5974702-5974822 7.5e-05 48_[+4]_64 chr2R:15565289-15565409 7.5e-05 9_[+4]_103 chr3L:20944330-20944450 7.5e-05 49_[+4]_63 chr4:406905-407025 7.5e-05 60_[+4]_52 chr2L:15438760-15438880 7.5e-05 61_[+4]_51 chr3L:563148-563268 0.00011 13_[+4]_99 chr2L:4350837-4350957 0.00011 48_[+4]_64 chr3R:22356699-22356819 0.00011 15_[+4]_97 chr3L:3875118-3875238 0.00011 14_[+4]_98 chr3L:19140490-19140610 0.00011 111_[+4]_1 chrX:4507253-4507373 0.00011 112_[+4] chr3R:18988111-18988231 0.00011 28_[+4]_84 chr2L:14432668-14432788 0.00011 40_[+4]_72 chrX:4530015-4530135 0.00011 13_[+4]_99 chr3L:14634328-14634448 0.00017 16_[+4]_96 chr3L:14762247-14762367 0.00017 59_[+4]_53 chr2R:15147729-15147849 0.00017 102_[+4]_10 chr3L:16409293-16409413 0.0002 42_[+4]_70 chrX:16782255-16782375 0.0002 83_[+4]_29 chr2R:18514014-18514134 0.0002 30_[+4]_82 chr2R:14130454-14130574 0.00025 82_[+4]_30 chr2L:17243507-17243627 0.00025 31_[+4]_81 chr2L:12371874-12371994 0.00025 77_[+4]_35 chr3L:17653587-17653707 0.00025 79_[+4]_33 chrX:10582169-10582289 0.00025 84_[+4]_28 chr3R:26539272-26539392 0.00025 56_[+4]_56 chr3R:25515527-25515647 0.00027 88_[+4]_24 chr3R:23314511-23314631 0.00027 71_[+4]_41 chr3R:21854142-21854262 0.00027 34_[+4]_78 chr2R:20126358-20126478 0.00027 106_[+4]_6 chr2L:9633253-9633373 0.00033 89_[+4]_23 chr3R:15089768-15089888 0.00033 107_[+4]_5 chr3R:19096344-19096464 0.00033 55_[+4]_57 chr2L:19949754-19949874 0.00033 57_[+4]_55 chr2L:20464496-20464616 0.00033 1_[+4]_111 chr3R:11312533-11312653 0.00033 100_[+4]_12 chrX:6253803-6253923 0.00033 105_[+4]_7 chr2R:22387649-22387769 0.00034 75_[+4]_37 chr3L:2466635-2466755 0.00037 43_[+4]_69 chr3L:8584240-8584360 0.00039 53_[+4]_59 chrX:1953050-1953170 0.00043 14_[+4]_98 chr3R:22147650-22147770 0.00043 48_[+4]_64 chr2R:6133335-6133455 0.00043 2_[+4]_110 chrX:17870989-17871109 0.00043 68_[+4]_44 chr3L:11120101-11120221 0.00045 44_[+4]_68 chr2L:20807771-20807891 0.00045 39_[+4]_73 chr3L:3300453-3300573 0.00047 23_[+4]_89 chr3R:8812665-8812785 0.00052 [+4]_112 chr3R:10665049-10665169 0.00054 81_[+4]_31 chr3L:9333839-9333959 0.00054 62_[+4]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAH MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAACAAAH width=8 seqs=66 chr2L:18567677-18567797 ( 37) AAACAAAA 1 chr3R:9870068-9870188 ( 85) AAACAAAA 1 chr3R:23331442-23331562 ( 100) AAACAAAA 1 chr3R:26956511-26956631 ( 83) AAACAAAA 1 chr2L:12603505-12603625 ( 104) AAACAAAA 1 chr2R:6512424-6512544 ( 99) AAACAAAC 1 chr2R:13539725-13539845 ( 63) AAACAAAC 1 chrX:2318312-2318432 ( 101) AAACAAAC 1 chr3R:31169045-31169165 ( 59) AAACAAAC 1 chr2R:22511597-22511717 ( 33) AAACAAAC 1 chr2R:7167874-7167994 ( 94) AAACAAAC 1 chr2L:9775345-9775465 ( 8) AAACAAAC 1 chr3L:8323958-8324078 ( 3) AAACAAAC 1 chr2L:9464832-9464952 ( 96) AAACAAAC 1 chr2L:16486532-16486652 ( 60) AAACAAAT 1 chr3R:25453431-25453551 ( 74) AAACAAAT 1 chr3L:5974702-5974822 ( 49) AAACAAAT 1 chr2R:15565289-15565409 ( 10) AAACAAAT 1 chr3L:20944330-20944450 ( 50) AAACAAAT 1 chr4:406905-407025 ( 61) AAACAAAT 1 chr2L:15438760-15438880 ( 62) AAACAAAT 1 chr3L:563148-563268 ( 14) AAAAAAAA 1 chr2L:4350837-4350957 ( 49) AAAAAAAA 1 chr3R:22356699-22356819 ( 16) AAAAAAAA 1 chr3L:3875118-3875238 ( 15) AAAAAAAA 1 chr3L:19140490-19140610 ( 112) AAAAAAAA 1 chrX:4507253-4507373 ( 113) AAAAAAAA 1 chr3R:18988111-18988231 ( 29) AAAAAAAA 1 chr2L:14432668-14432788 ( 41) AAAAAAAA 1 chrX:4530015-4530135 ( 14) AAAAAAAA 1 chr3L:14634328-14634448 ( 17) AAATAAAA 1 chr3L:14762247-14762367 ( 60) AAATAAAA 1 chr2R:15147729-15147849 ( 103) AAATAAAA 1 chr3L:16409293-16409413 ( 43) AAAAAAAT 1 chrX:16782255-16782375 ( 84) AAAAAAAT 1 chr2R:18514014-18514134 ( 31) AAAAAAAT 1 chr2R:14130454-14130574 ( 83) AAACAAGA 1 chr2L:17243507-17243627 ( 32) AAATAAAC 1 chr2L:12371874-12371994 ( 78) AAACAAGA 1 chr3L:17653587-17653707 ( 80) AAATAAAC 1 chrX:10582169-10582289 ( 85) AAACAAGA 1 chr3R:26539272-26539392 ( 57) AAATAAAC 1 chr3R:25515527-25515647 ( 89) AAACAACA 1 chr3R:23314511-23314631 ( 72) AAACAACA 1 chr3R:21854142-21854262 ( 35) AAACAACA 1 chr2R:20126358-20126478 ( 107) AAACAACA 1 chr2L:9633253-9633373 ( 90) AAATAAAT 1 chr3R:15089768-15089888 ( 108) AAATAAAT 1 chr3R:19096344-19096464 ( 56) AAATAAAT 1 chr2L:19949754-19949874 ( 58) AAACAAGC 1 chr2L:20464496-20464616 ( 2) AAATAAAT 1 chr3R:11312533-11312653 ( 101) AAATAAAT 1 chrX:6253803-6253923 ( 106) AAATAAAT 1 chr2R:22387649-22387769 ( 76) AAACAACC 1 chr3L:2466635-2466755 ( 44) AAACAAGT 1 chr3L:8584240-8584360 ( 54) AAACAACT 1 chrX:1953050-1953170 ( 15) AAACAAAG 1 chr3R:22147650-22147770 ( 49) AAACAAAG 1 chr2R:6133335-6133455 ( 3) AAACACAA 1 chrX:17870989-17871109 ( 69) AAACACAA 1 chr3L:11120101-11120221 ( 45) AAACACAC 1 chr2L:20807771-20807891 ( 40) AAACACAC 1 chr3L:3300453-3300573 ( 24) AAAAAAGA 1 chr3R:8812665-8812785 ( 1) AAAAAACA 1 chr3R:10665049-10665169 ( 82) AAAAAAGC 1 chr3L:9333839-9333959 ( 63) AAAAAAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAH MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4922 E= 8.9e+000 186 -1269 -1269 -1269 186 -1269 -1269 -1269 186 -1269 -1269 -1269 -18 140 -1269 -64 186 -1269 -1269 -1269 177 -184 -1269 -1269 149 -104 -88 -1269 62 33 -288 -5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAH MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 8.9e+000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.242424 0.575758 0.000000 0.181818 1.000000 0.000000 0.000000 0.000000 0.939394 0.060606 0.000000 0.000000 0.772727 0.106061 0.121212 0.000000 0.424242 0.272727 0.030303 0.272727 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAACAAAH MEME-4 regular expression -------------------------------------------------------------------------------- AAA[CA]AAA[ACT] -------------------------------------------------------------------------------- Time 27.13 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGTTTGY MEME-5 width = 8 sites = 43 llr = 348 E-value = 2.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGTTTGY MEME-5 Description -------------------------------------------------------------------------------- Simplified A 2:1::::: pos.-specific C :::::::5 probability G ::8:::81 matrix T 8a1aaa24 bits 2.2 2.0 1.8 * *** 1.5 * **** Relative 1.3 * **** Entropy 1.1 ******* (11.7 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTGTTTGC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTGY MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:16534199-16534319 30 1.99e-05 ttgtttagtt ttgtttGC TCGTTAGCCG chrX:14633332-14633452 79 1.99e-05 TCTAACTTTT TTGTTTGC CTCTTGTATT chr3L:5974702-5974822 69 1.99e-05 CATATGCGCC TTGTTTGC ATATAGAAAT chr2L:7339755-7339875 28 1.99e-05 AGTCGTTGAT TTGTTTGC ACTGACCCGC chr3L:642948-643068 10 1.99e-05 TTTTATGCT TTGTTTGC CCATTACAAA chr2L:9775345-9775465 98 1.99e-05 GAATAGGAAA TTGTTTGC GGCAAATATA chr3L:20954285-20954405 62 1.99e-05 ACCCGAAGAT TTGTTTGC TTTACTTTTC chr3L:16407855-16407975 81 1.99e-05 CGGCAATCGT TTGTTTGC GTGTGTATTT chr2R:14130454-14130574 11 4.56e-05 GTTTTGGGCC TTGTTTGT TTTGTTTCTC chr3R:18311686-18311806 34 4.56e-05 tttgtttcct ttgtttgt ttgttGTAAC chr3L:11120101-11120221 29 4.56e-05 GACGGATGTC TTGTTTGT CTCTTTGTAA chr3R:31551055-31551175 72 4.56e-05 AACACAAAAC TTGTTTGT TTCCCCGCGA chr3R:23314511-23314631 88 4.56e-05 caacGCCAGG TTGTTTGT TTAGCCGAGA chr2R:15565289-15565409 70 4.56e-05 TGAAAACCAA TTGTTTGT TGGGTAAATA chr2R:21607942-21608062 71 6.50e-05 TGCCTTATTT ATGTTTGC TTAACTTGCC chr2L:16486532-16486652 18 6.50e-05 CCAGTCGTAC ATGTTTGC GCTCTCGCTC chr2R:9006902-9007022 30 6.50e-05 TTTCTGGCTA ATGTTTGC TGCCTCTGTT chr3L:10285019-10285139 62 6.50e-05 TTCAGTTTCA ATGTTTGC ACATAGATGG chr3R:10203687-10203807 54 6.50e-05 ACAAATATTT ATGTTTGC TTACAGTGCA chr2R:22538107-22538227 43 1.11e-04 GAGACGGCAG ATGTTTGT TTAATACATT chr3L:2475961-2476081 105 1.11e-04 CAAATACCTT TTGTTTGG GGGCCTAA chr2L:9633253-9633373 42 1.11e-04 GGTTCTTCGC TTGTTTGG ATTGGCCTCT chr3R:11269155-11269275 31 1.11e-04 GCGCCCTCTG TTGTTTGG CTTCCTGAAC chr2L:6700768-6700888 33 1.11e-04 TCATTGGTCC ATGTTTGT TAATCTCTTC chr2L:14545498-14545618 27 1.11e-04 TCCGAGTCCA ATGTTTGT CTAGGCGTCG chr2R:22387649-22387769 61 1.11e-04 CTCTAGCTTG TTGTTTGG CCTACAAAAA chr3L:8323958-8324078 47 1.11e-04 TCAAGATTAA ATGTTTGT TCTACTTACC chr2R:13539725-13539845 6 1.36e-04 TATTT TTGTTTTC ATTACAACAA chr4:406905-407025 112 1.36e-04 TTTTCAAAAA TTGTTTTC A chrX:16746954-16747074 109 1.36e-04 TTTCCACCTT TTGTTTTC GCCG chr2L:8611012-8611132 89 1.61e-04 CGAGTCGATA TTTTTTGC GCAGTGTACT chr2R:23097117-23097237 95 1.61e-04 TTGCATTCCA TTTTTTGC TGCATACTCT chr2R:7776713-7776833 110 1.93e-04 TATGTTCGGA TTGTTTTT CTC chr3R:30021879-30021999 24 1.93e-04 gcactcgctt ttgttttt gcAATGCAGG chrX:3741189-3741309 58 1.93e-04 GAAGAGTCGA TTGTTTTT ACTGGCCGCT chr2L:19426204-19426324 28 1.93e-04 GATGGTGTTG TTGTTTTT CCGCCCTGTG chr2R:17892977-17893097 88 2.26e-04 ATGAAGTTTT TTTTTTGT CCTTTTCTTG chrX:16782255-16782375 1 2.26e-04 . TTTTTTGT CAGATTTTGT chr2R:15147729-15147849 36 2.26e-04 TTAAGTTTAC TTTTTTGT TTACAAAAGT chr3L:10271717-10271837 102 2.26e-04 CTGGAAGAAG TTTTTTGT TCGGCTGGAA chr2R:23725984-23726104 57 2.50e-04 TTATGCTAAT TTATTTGC CTGTTTACCA chr3R:6854474-6854594 52 2.50e-04 ATGTAAACAA TTATTTGC TCCAATCTGA chr3L:15267845-15267965 16 2.50e-04 TTGCATACCT TTATTTGC TTAGAGTAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTGY MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:16534199-16534319 2e-05 29_[+5]_83 chrX:14633332-14633452 2e-05 78_[+5]_34 chr3L:5974702-5974822 2e-05 68_[+5]_44 chr2L:7339755-7339875 2e-05 27_[+5]_85 chr3L:642948-643068 2e-05 9_[+5]_103 chr2L:9775345-9775465 2e-05 97_[+5]_15 chr3L:20954285-20954405 2e-05 61_[+5]_51 chr3L:16407855-16407975 2e-05 80_[+5]_32 chr2R:14130454-14130574 4.6e-05 10_[+5]_102 chr3R:18311686-18311806 4.6e-05 33_[+5]_79 chr3L:11120101-11120221 4.6e-05 28_[+5]_84 chr3R:31551055-31551175 4.6e-05 71_[+5]_41 chr3R:23314511-23314631 4.6e-05 87_[+5]_25 chr2R:15565289-15565409 4.6e-05 69_[+5]_43 chr2R:21607942-21608062 6.5e-05 70_[+5]_42 chr2L:16486532-16486652 6.5e-05 17_[+5]_95 chr2R:9006902-9007022 6.5e-05 29_[+5]_83 chr3L:10285019-10285139 6.5e-05 61_[+5]_51 chr3R:10203687-10203807 6.5e-05 53_[+5]_59 chr2R:22538107-22538227 0.00011 42_[+5]_70 chr3L:2475961-2476081 0.00011 104_[+5]_8 chr2L:9633253-9633373 0.00011 41_[+5]_71 chr3R:11269155-11269275 0.00011 30_[+5]_82 chr2L:6700768-6700888 0.00011 32_[+5]_80 chr2L:14545498-14545618 0.00011 26_[+5]_86 chr2R:22387649-22387769 0.00011 60_[+5]_52 chr3L:8323958-8324078 0.00011 46_[+5]_66 chr2R:13539725-13539845 0.00014 5_[+5]_107 chr4:406905-407025 0.00014 111_[+5]_1 chrX:16746954-16747074 0.00014 108_[+5]_4 chr2L:8611012-8611132 0.00016 88_[+5]_24 chr2R:23097117-23097237 0.00016 94_[+5]_18 chr2R:7776713-7776833 0.00019 109_[+5]_3 chr3R:30021879-30021999 0.00019 23_[+5]_89 chrX:3741189-3741309 0.00019 57_[+5]_55 chr2L:19426204-19426324 0.00019 27_[+5]_85 chr2R:17892977-17893097 0.00023 87_[+5]_25 chrX:16782255-16782375 0.00023 [+5]_112 chr2R:15147729-15147849 0.00023 35_[+5]_77 chr3L:10271717-10271837 0.00023 101_[+5]_11 chr2R:23725984-23726104 0.00025 56_[+5]_56 chr3R:6854474-6854594 0.00025 51_[+5]_61 chr3L:15267845-15267965 0.00025 15_[+5]_97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTGY MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGTTTGY width=8 seqs=43 chr2L:16534199-16534319 ( 30) TTGTTTGC 1 chrX:14633332-14633452 ( 79) TTGTTTGC 1 chr3L:5974702-5974822 ( 69) TTGTTTGC 1 chr2L:7339755-7339875 ( 28) TTGTTTGC 1 chr3L:642948-643068 ( 10) TTGTTTGC 1 chr2L:9775345-9775465 ( 98) TTGTTTGC 1 chr3L:20954285-20954405 ( 62) TTGTTTGC 1 chr3L:16407855-16407975 ( 81) TTGTTTGC 1 chr2R:14130454-14130574 ( 11) TTGTTTGT 1 chr3R:18311686-18311806 ( 34) TTGTTTGT 1 chr3L:11120101-11120221 ( 29) TTGTTTGT 1 chr3R:31551055-31551175 ( 72) TTGTTTGT 1 chr3R:23314511-23314631 ( 88) TTGTTTGT 1 chr2R:15565289-15565409 ( 70) TTGTTTGT 1 chr2R:21607942-21608062 ( 71) ATGTTTGC 1 chr2L:16486532-16486652 ( 18) ATGTTTGC 1 chr2R:9006902-9007022 ( 30) ATGTTTGC 1 chr3L:10285019-10285139 ( 62) ATGTTTGC 1 chr3R:10203687-10203807 ( 54) ATGTTTGC 1 chr2R:22538107-22538227 ( 43) ATGTTTGT 1 chr3L:2475961-2476081 ( 105) TTGTTTGG 1 chr2L:9633253-9633373 ( 42) TTGTTTGG 1 chr3R:11269155-11269275 ( 31) TTGTTTGG 1 chr2L:6700768-6700888 ( 33) ATGTTTGT 1 chr2L:14545498-14545618 ( 27) ATGTTTGT 1 chr2R:22387649-22387769 ( 61) TTGTTTGG 1 chr3L:8323958-8324078 ( 47) ATGTTTGT 1 chr2R:13539725-13539845 ( 6) TTGTTTTC 1 chr4:406905-407025 ( 112) TTGTTTTC 1 chrX:16746954-16747074 ( 109) TTGTTTTC 1 chr2L:8611012-8611132 ( 89) TTTTTTGC 1 chr2R:23097117-23097237 ( 95) TTTTTTGC 1 chr2R:7776713-7776833 ( 110) TTGTTTTT 1 chr3R:30021879-30021999 ( 24) TTGTTTTT 1 chrX:3741189-3741309 ( 58) TTGTTTTT 1 chr2L:19426204-19426324 ( 28) TTGTTTTT 1 chr2R:17892977-17893097 ( 88) TTTTTTGT 1 chrX:16782255-16782375 ( 1) TTTTTTGT 1 chr2R:15147729-15147849 ( 36) TTTTTTGT 1 chr3L:10271717-10271837 ( 102) TTTTTTGT 1 chr2R:23725984-23726104 ( 57) TTATTTGC 1 chr3R:6854474-6854594 ( 52) TTATTTGC 1 chr3L:15267845-15267965 ( 16) TTATTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTGY MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8783 E= 2.2e+003 -40 -1207 -1207 148 -1207 -1207 -1207 182 -198 -1207 182 -102 -1207 -1207 -1207 182 -1207 -1207 -1207 182 -1207 -1207 -1207 182 -1207 -1207 190 -80 -1207 117 -127 56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTGY MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 2.2e+003 0.209302 0.000000 0.000000 0.790698 0.000000 0.000000 0.000000 1.000000 0.069767 0.000000 0.790698 0.139535 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.837209 0.162791 0.000000 0.488372 0.093023 0.418605 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTGY MEME-5 regular expression -------------------------------------------------------------------------------- [TA]TGTTTG[CT] -------------------------------------------------------------------------------- Time 32.92 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23258434-23258554 6.25e-02 50_[+1(3.36e-05)]_62 chr2L:11904314-11904434 1.68e-02 74_[+2(5.73e-05)]_38 chr2L:9464832-9464952 5.05e-04 24_[+3(7.37e-05)]_7_[+2(7.23e-05)]_\ 48_[+4(4.76e-05)]_17 chr2L:10459129-10459249 6.86e-03 38_[+1(3.36e-05)]_20_[+2(7.23e-05)]_\ 46 chr3L:22223239-22223359 5.30e-03 120 chr2R:11408277-11408397 2.75e-01 120 chr3L:11892914-11893034 2.68e-03 52_[+1(6.82e-06)]_60 chrX:13204853-13204973 5.41e-01 120 chr3L:14925744-14925864 3.09e-04 47_[+1(2.11e-05)]_19_[+3(8.94e-05)]_\ 38 chr2R:18473370-18473490 1.95e-01 120 chrX:2388096-2388216 3.07e-02 66_[+2(3.08e-05)]_46 chrX:4293539-4293659 5.43e-02 60_[+2(1.18e-05)]_30_[+2(1.18e-05)]_\ 14 chr3R:6970681-6970801 1.71e-02 65_[+1(6.92e-05)]_47 chr3L:18235532-18235652 1.62e-01 42_[+2(7.23e-05)]_70 chr3L:11876199-11876319 9.84e-03 68_[+1(1.57e-05)]_44 chr3L:8323958-8324078 3.86e-03 2_[+4(4.76e-05)]_110 chr2R:11410854-11410974 7.91e-02 68_[+1(3.36e-05)]_44 chr3L:15267845-15267965 3.04e-03 63_[+2(2.14e-05)]_49 chr2L:12603505-12603625 7.68e-03 83_[+2(7.23e-05)]_12_[+4(2.66e-05)]_\ 9 chr2L:4418159-4418279 3.84e-02 120 chr3R:7304575-7304695 2.10e-02 24_[+1(1.57e-05)]_88 chrX:14910749-14910869 1.58e-01 120 chrX:16746954-16747074 5.37e-03 39_[+2(3.08e-05)]_73 chr3R:25591650-25591770 7.77e-01 120 chrX:11081939-11082059 4.82e-02 54_[+2(1.18e-05)]_58 chr3R:25112670-25112790 7.89e-02 85_[+1(4.22e-05)]_27 chrX:6253803-6253923 6.98e-03 65_[+2(2.14e-05)]_47 chr2L:10615206-10615326 2.68e-04 72_[+2(3.84e-05)]_40 chrX:2659615-2659735 4.35e-04 40_[+1(6.82e-06)]_54_[+3(8.94e-05)]_\ 10 chrX:17532376-17532496 1.55e-02 79_[+1(6.82e-06)]_33 chr2R:7104639-7104759 2.86e-03 42_[+1(1.57e-05)]_70 chrX:13401367-13401487 8.74e-03 57_[+1(1.57e-05)]_55 chr2L:15438760-15438880 1.30e-01 61_[+4(7.49e-05)]_51 chrX:21565677-21565797 3.45e-04 45_[+1(6.82e-06)]_59_[+3(2.84e-05)] chr3R:6854474-6854594 2.61e-01 120 chr2L:15949602-15949722 2.76e-04 59_[+2(1.18e-05)]_53 chr3L:10281959-10282079 5.87e-02 39_[+1(3.36e-05)]_73 chr3R:6870885-6871005 8.45e-02 120 chr2R:19468995-19469115 9.94e-04 57_[+2(3.84e-05)]_6_[+1(3.36e-05)]_\ 13_[+1(1.57e-05)]_20 chr3L:15268056-15268176 7.69e-01 120 chr3R:25591857-25591977 9.71e-01 120 chr3L:10271717-10271837 3.70e-02 120 chr3L:16407855-16407975 1.61e-04 43_[+2(1.18e-05)]_29_[+5(1.99e-05)]_\ 32 chr3R:6973355-6973475 1.09e-01 120 chr3L:15893638-15893758 1.61e-04 1_[+3(8.94e-05)]_38_[+1(6.82e-06)]_\ 65 chr3R:29716139-29716259 1.00e-04 26_[+1(1.57e-05)]_32_[+3(8.63e-06)]_\ 46 chr3L:18032837-18032957 5.55e-01 120 chr3L:18968696-18968816 2.75e-01 120 chr3R:21179754-21179874 5.25e-03 31_[+1(6.82e-06)]_81 chr2R:10207878-10207998 1.14e-04 41_[+1(6.82e-06)]_19_[+3(7.37e-05)]_\ 44 chr3R:11312533-11312653 5.17e-02 54_[+2(3.84e-05)]_58 chr2L:20464496-20464616 1.52e-02 44_[+2(1.18e-05)]_68 chr3R:27228480-27228600 9.50e-03 120 chrX:3311457-3311577 3.20e-02 86_[+2(1.18e-05)]_26 chrX:17870769-17870889 2.16e-02 9_[+1(4.22e-05)]_103 chr3L:3769321-3769441 1.79e-02 20_[+2(2.14e-05)]_92 chr3R:16782501-16782621 1.50e-02 64_[+1(1.57e-05)]_48 chr3R:5300739-5300859 1.78e-02 20_[+2(3.08e-05)]_92 chr3L:9333839-9333959 3.42e-03 102_[+2(3.08e-05)]_10 chrX:1401697-1401817 8.25e-02 120 chrX:6110020-6110140 5.79e-04 80_[+2(2.14e-05)]_32 chr3R:26956511-26956631 1.59e-03 82_[+4(2.66e-05)]_30 chrX:14910142-14910262 3.01e-03 45_[+1(6.82e-06)]_67 chr3R:10203687-10203807 1.28e-03 53_[+5(6.50e-05)]_23_[+2(1.18e-05)]_\ 28 chr3R:29087590-29087710 5.03e-02 53_[+2(2.14e-05)]_59 chr3L:19132744-19132864 2.74e-03 33_[+1(2.11e-05)]_79 chrX:2659817-2659937 1.06e-01 14_[+3(1.96e-05)]_98 chr3L:508049-508169 2.53e-01 120 chr2L:16743077-16743197 2.73e-03 71_[+2(1.18e-05)]_41 chr3L:10886041-10886161 9.47e-02 93_[+1(3.36e-05)]_19 chr3R:31134161-31134281 2.99e-02 28_[+1(1.57e-05)]_84 chrX:9286532-9286652 1.72e-03 38_[+3(4.66e-05)]_7_[+2(2.14e-05)]_\ 59 chr2L:6357090-6357210 2.27e-01 54_[+3(7.37e-05)]_58 chr2R:23878945-23879065 5.68e-01 120 chr3L:16769984-16770104 9.45e-03 120 chr3L:12526943-12527063 5.70e-02 73_[+2(1.18e-05)]_39 chr2L:19426204-19426324 3.51e-01 120 chrX:16967553-16967673 1.30e-02 77_[+2(3.84e-05)]_35 chrX:4530015-4530135 2.81e-03 32_[+1(1.57e-05)]_58_[+1(7.58e-05)]_\ 14 chr2R:13959605-13959725 1.53e-02 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42_[+2(2.14e-05)]_70 chr3L:8324158-8324278 9.26e-01 120 chr2R:22387649-22387769 1.03e-01 120 chrX:17870989-17871109 2.24e-01 120 chr3R:25851282-25851402 6.92e-01 120 chr2L:19949754-19949874 8.87e-02 120 chr3R:23331442-23331562 2.05e-02 99_[+4(2.66e-05)]_13 chr3R:18988111-18988231 8.94e-02 120 chr3L:20954285-20954405 1.12e-01 61_[+5(1.99e-05)]_51 chr3L:10285019-10285139 1.90e-03 61_[+5(6.50e-05)]_4_[+2(1.18e-05)]_\ 39 chr3L:959474-959594 7.61e-01 120 chr2R:11716513-11716633 1.35e-02 91_[+1(6.06e-05)]_21 chr3L:3767944-3768064 2.06e-03 30_[+1(1.57e-05)]_82 chr2R:21323911-21324031 7.01e-01 120 chrX:3741189-3741309 6.10e-02 120 chrX:4507253-4507373 8.42e-04 60_[+1(1.57e-05)]_52 chr4:68790-68910 3.39e-01 120 chr2L:9775345-9775465 9.31e-04 7_[+4(4.76e-05)]_82_[+5(1.99e-05)]_\ 15 chr2R:7167874-7167994 1.70e-01 93_[+4(4.76e-05)]_19 chr2R:21323712-21323832 2.59e-01 120 chr3L:5988855-5988975 7.13e-01 120 chr3R:19096344-19096464 2.07e-02 120 chr2L:7635326-7635446 9.86e-01 120 chrX:17720355-17720475 6.92e-01 120 chr3R:10665049-10665169 4.77e-04 16_[+1(2.11e-05)]_96 chr3L:11408683-11408803 8.92e-01 120 chr3L:3818896-3819016 4.77e-01 120 chrX:7162659-7162779 5.50e-03 73_[+2(1.18e-05)]_39 chr2L:8611012-8611132 2.89e-01 120 chr3R:16748661-16748781 4.86e-03 69_[+2(1.18e-05)]_43 chr3L:17981218-17981338 9.10e-01 120 chr2R:22511597-22511717 7.96e-03 32_[+4(4.76e-05)]_13_[+3(7.37e-05)]_\ 10_[+4(7.49e-05)]_41 chr3L:3305608-3305728 6.85e-02 92_[+3(1.96e-05)]_20 chr3L:21484010-21484130 1.39e-02 120 chr3L:8584240-8584360 2.61e-01 120 chr2L:14545498-14545618 1.17e-01 120 chrX:4498420-4498540 3.40e-01 120 chr2R:21134557-21134677 2.08e-01 120 chr2L:6700768-6700888 1.87e-01 120 chr3L:19140490-19140610 2.52e-01 120 chr2R:6133335-6133455 1.02e-02 120 chr3R:31134360-31134480 6.33e-01 120 chr3L:20944330-20944450 7.06e-03 49_[+4(7.49e-05)]_63 chr2L:7984967-7985087 9.11e-01 120 chr3R:10622342-10622462 2.48e-02 65_[+1(7.58e-05)]_47 chr3R:26568541-26568661 4.07e-01 120 chr3L:642948-643068 1.41e-01 9_[+5(1.99e-05)]_103 chr3R:23176579-23176699 5.67e-01 120 chr2L:7239439-7239559 6.08e-01 120 chr3L:3875118-3875238 1.05e-01 120 chr2R:19997558-19997678 2.70e-02 40_[+2(3.08e-05)]_32_[+2(7.23e-05)]_\ 32 chr2R:9006902-9007022 5.95e-02 29_[+5(6.50e-05)]_83 chr2R:23725984-23726104 2.69e-02 120 chr3R:5299133-5299253 8.35e-02 120 chr2L:20807771-20807891 4.05e-02 120 chr3L:20711557-20711677 1.39e-01 120 chr3L:13189414-13189534 4.70e-01 120 chr3R:6818789-6818909 3.17e-01 120 chr2L:7339755-7339875 3.13e-03 27_[+5(1.99e-05)]_85 chr3R:13999706-13999826 6.00e-01 120 chrX:22837559-22837679 6.29e-01 120 chr3R:9870068-9870188 5.68e-03 84_[+4(2.66e-05)]_28 chr2R:11636031-11636151 9.10e-01 120 chr3R:22596616-22596736 1.99e-01 120 chr3L:16412435-16412555 2.06e-02 8_[+1(1.57e-05)]_104 chr2R:11639761-11639881 2.44e-01 120 chrX:13563581-13563701 1.26e-03 4_[+1(6.82e-06)]_50_[+2(4.77e-05)]_\ 50 chrX:10582169-10582289 3.00e-01 120 chr3L:2531432-2531552 6.37e-03 30_[+1(6.82e-06)]_82 chr3R:4970797-4970917 5.62e-02 16_[+2(2.14e-05)]_56_[+2(1.18e-05)]_\ 32 chr2L:5261358-5261478 2.34e-01 120 chr3R:14017783-14017903 4.89e-03 54_[+2(3.08e-05)]_12_[+3(1.96e-05)]_\ 38 chr2R:15565289-15565409 1.13e-02 9_[+4(7.49e-05)]_52_[+5(4.56e-05)]_\ 43 chr3R:26654724-26654844 6.30e-02 120 chr2R:15147729-15147849 1.71e-02 120 chrX:16782255-16782375 4.18e-02 120 chr3R:20948069-20948189 1.33e-02 112_[+1(6.82e-06)] chr3R:10675306-10675426 9.24e-01 120 chr3R:23723707-23723827 7.20e-01 120 chr3R:21854142-21854262 3.60e-03 19_[+3(7.37e-05)]_93 chrX:6614375-6614495 5.17e-01 120 chr3L:5974702-5974822 1.01e-02 48_[+4(7.49e-05)]_12_[+5(1.99e-05)]_\ 44 chr3L:3300453-3300573 3.82e-01 120 chr3R:20542381-20542501 4.01e-01 120 chr3R:8812665-8812785 4.59e-01 120 chr3L:14762247-14762367 2.34e-01 120 chr3R:18439448-18439568 1.68e-01 120 chr3R:22147650-22147770 2.01e-01 120 chr3R:25453431-25453551 3.73e-02 73_[+4(7.49e-05)]_39 chr2R:8943757-8943877 2.39e-01 120 chr3R:31169045-31169165 3.14e-03 39_[+3(7.37e-05)]_11_[+4(4.76e-05)]_\ 54 chr3R:11269155-11269275 3.81e-03 20_[+1(3.36e-05)]_92 chr3R:23314511-23314631 5.61e-03 87_[+5(4.56e-05)]_25 chr3R:25515527-25515647 4.40e-03 120 chr2R:9183591-9183711 4.69e-01 120 chr3L:18403361-18403481 5.53e-01 120 chrX:2318312-2318432 1.77e-01 100_[+4(4.76e-05)]_12 chr3R:31395370-31395490 6.69e-01 120 chrX:1845550-1845670 8.09e-01 120 chr3R:15089768-15089888 7.13e-02 120 chr2L:18567677-18567797 2.79e-03 36_[+4(2.66e-05)]_19_[+3(4.66e-05)]_\ 49 chr3R:4659756-4659876 8.60e-02 120 chr3L:18226083-18226203 9.05e-01 120 chr3L:12083924-12084044 4.70e-01 120 chrX:14633332-14633452 1.04e-01 78_[+5(1.99e-05)]_34 chr3R:30021879-30021999 3.44e-03 69_[+3(4.66e-05)]_43 chr3R:16261011-16261131 5.98e-02 120 chr2R:17892977-17893097 2.32e-01 120 chr3L:17653587-17653707 6.73e-02 120 chr2L:6323645-6323765 8.61e-02 120 chr3L:5447270-5447390 1.66e-01 120 chr3L:19933015-19933135 4.39e-01 120 chr2R:13539725-13539845 3.23e-04 62_[+4(4.76e-05)]_50 chr2L:16534199-16534319 3.37e-02 29_[+5(1.99e-05)]_83 chr3L:21604421-21604541 3.51e-01 120 chr3R:22356699-22356819 2.79e-02 104_[+3(8.94e-05)]_8 chr3R:7346588-7346708 7.52e-04 9_[+1(6.06e-05)]_44_[+1(1.57e-05)]_\ 37_[+2(2.14e-05)]_6 chr3R:31551055-31551175 9.80e-02 71_[+5(4.56e-05)]_41 chr3L:1690946-1691066 1.78e-01 12_[+2(5.73e-05)]_100 chr2L:12371874-12371994 5.02e-03 120 chr3L:16409293-16409413 3.65e-03 20_[+1(3.36e-05)]_92 chr2R:6512424-6512544 1.99e-02 33_[+5(6.50e-05)]_40_[+5(6.50e-05)]_\ 9_[+4(4.76e-05)]_14 chr3L:1029781-1029901 1.05e-01 120 chr2L:4350837-4350957 1.27e-01 120 chr3L:11120101-11120221 1.53e-03 28_[+5(4.56e-05)]_84 chr3L:3862542-3862662 6.08e-01 120 chr3R:18311686-18311806 5.40e-03 20_[+5(4.56e-05)]_5_[+5(4.56e-05)]_\ 46_[+1(7.58e-05)]_25 chr2L:16486532-16486652 1.54e-03 17_[+5(6.50e-05)]_34_[+4(7.49e-05)]_\ 53 chrX:1854171-1854291 5.38e-02 120 chr3R:28329279-28329399 6.79e-01 120 chr3L:8072791-8072911 6.77e-01 120 chr3L:14634328-14634448 1.83e-01 120 chr2R:9303023-9303143 8.43e-01 120 chr3R:10643281-10643401 1.43e-01 120 chr2L:9633253-9633373 8.12e-03 120 chr2L:17243507-17243627 6.10e-01 120 chr3L:2475961-2476081 2.81e-02 120 chr3L:5869758-5869878 5.18e-03 37_[+2(1.18e-05)]_75 chr2R:22538107-22538227 1.19e-01 120 chr2R:21607942-21608062 7.14e-02 70_[+5(6.50e-05)]_42 chr3L:2466635-2466755 2.84e-02 120 chrX:1953050-1953170 3.06e-06 66_[+1(1.57e-05)]_4_[+3(8.63e-06)]_\ 9_[+2(3.08e-05)]_17 chr3L:563148-563268 8.82e-02 120 chr3L:18848561-18848681 5.93e-01 120 chr2L:20974377-20974497 5.79e-01 120 chr2R:14130454-14130574 1.69e-02 10_[+5(4.56e-05)]_102 chr3R:11613291-11613411 6.21e-02 120 chr2R:7776713-7776833 8.04e-02 120 chr2L:16350222-16350342 5.59e-03 54_[+3(4.66e-05)]_3_[+3(7.37e-05)]_\ 47 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************