******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG14711.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:10805715-10805835 1.0000 120 chr3L:995810-995930 1.0000 120 chr3L:18032963-18033083 1.0000 120 chr3L:18034648-18034768 1.0000 120 chr2L:8041004-8041124 1.0000 120 chrX:11611117-11611237 1.0000 120 chr3L:3419977-3420097 1.0000 120 chr3L:8985574-8985694 1.0000 120 chr4:659181-659301 1.0000 120 chr2R:8435049-8435169 1.0000 120 chr2L:15062215-15062335 1.0000 120 chr2R:12321202-12321322 1.0000 120 chr3R:31580015-31580135 1.0000 120 chr3L:15976853-15976973 1.0000 120 chr2R:17452606-17452726 1.0000 120 chr2L:20830103-20830223 1.0000 120 chr2R:6810482-6810602 1.0000 120 chr2L:14614568-14614688 1.0000 120 chrX:254814-254934 1.0000 120 chrX:5064010-5064130 1.0000 120 chr2L:11990804-11990924 1.0000 120 chr2R:13183878-13183998 1.0000 120 chrX:11125120-11125240 1.0000 120 chr2R:17019872-17019992 1.0000 120 chr2R:20281143-20281263 1.0000 120 chr3R:24931945-24932065 1.0000 120 chr2L:4965560-4965680 1.0000 120 chr3L:4429042-4429162 1.0000 120 chrX:13759124-13759244 1.0000 120 chr2R:21000653-21000773 1.0000 120 chr3L:16121901-16122021 1.0000 120 chr3R:14630349-14630469 1.0000 120 chr2R:13198733-13198853 1.0000 120 chrX:17885614-17885734 1.0000 120 chr2L:8302908-8303028 1.0000 120 chrX:6858624-6858744 1.0000 120 chrX:19498902-19499022 1.0000 120 chr3R:27273223-27273343 1.0000 120 chr3R:7085570-7085690 1.0000 120 chr2R:17870978-17871098 1.0000 120 chr2L:20065675-20065795 1.0000 120 chr3R:17794951-17795071 1.0000 120 chr2L:10211132-10211252 1.0000 120 chr3R:26248247-26248367 1.0000 120 chr2R:16008228-16008348 1.0000 120 chrX:10906485-10906605 1.0000 120 chr3R:18245346-18245466 1.0000 120 chr2R:20281346-20281466 1.0000 120 chr2L:4382674-4382794 1.0000 120 chr2R:7930991-7931111 1.0000 120 chr2R:13206673-13206793 1.0000 120 chr3R:18314992-18315112 1.0000 120 chrX:2636275-2636395 1.0000 120 chr3L:4116642-4116762 1.0000 120 chr3L:3159529-3159649 1.0000 120 chr3R:25245123-25245243 1.0000 120 chr2R:7785906-7786026 1.0000 120 chr2R:9964990-9965110 1.0000 120 chr2L:874252-874372 1.0000 120 chr3L:2478756-2478876 1.0000 120 chr2L:21071597-21071717 1.0000 120 chr4:1029318-1029438 1.0000 120 chrX:18884150-18884270 1.0000 120 chr3L:16139247-16139367 1.0000 120 chrX:5428355-5428475 1.0000 120 chr3R:20949838-20949958 1.0000 120 chr2L:20891293-20891413 1.0000 120 chrX:16881166-16881286 1.0000 120 chr3L:19792856-19792976 1.0000 120 chr3R:13780828-13780948 1.0000 120 chr3R:19212665-19212785 1.0000 120 chr3R:31715155-31715275 1.0000 120 chr2R:18426320-18426440 1.0000 120 chr3R:27700311-27700431 1.0000 120 chr3R:7944958-7945078 1.0000 120 chr3L:17051202-17051322 1.0000 120 chrX:13934532-13934652 1.0000 120 chr3R:24659539-24659659 1.0000 120 chr3R:9423357-9423477 1.0000 120 chrX:3444880-3445000 1.0000 120 chr3R:9679883-9680003 1.0000 120 chr3R:22816555-22816675 1.0000 120 chrX:12632586-12632706 1.0000 120 chrX:5746309-5746429 1.0000 120 chr2L:7405055-7405175 1.0000 120 chrX:2061938-2062058 1.0000 120 chr4:416360-416480 1.0000 120 chr3L:5927673-5927793 1.0000 120 chr3L:3143441-3143561 1.0000 120 chr3L:11272767-11272887 1.0000 120 chr3R:9343337-9343457 1.0000 120 chr2L:18119820-18119940 1.0000 120 chr3R:25476920-25477040 1.0000 120 chrX:22455082-22455202 1.0000 120 chrX:2108757-2108877 1.0000 120 chr2L:2576912-2577032 1.0000 120 chrX:10735412-10735532 1.0000 120 chrX:8895094-8895214 1.0000 120 chr2R:21312246-21312366 1.0000 120 chr3L:11119546-11119666 1.0000 120 chr3R:14901556-14901676 1.0000 120 chr3R:23902716-23902836 1.0000 120 chr2L:4930698-4930818 1.0000 120 chr2R:24535380-24535500 1.0000 120 chr3L:5247182-5247302 1.0000 120 chr2R:9446834-9446954 1.0000 120 chr3L:14362199-14362319 1.0000 120 chr3R:12997556-12997676 1.0000 120 chr2L:11849723-11849843 1.0000 120 chr3L:875530-875650 1.0000 120 chr2L:4973895-4974015 1.0000 120 chrX:11819370-11819490 1.0000 120 chr3L:1798716-1798836 1.0000 120 chr3L:22871077-22871197 1.0000 120 chrX:3667316-3667436 1.0000 120 chrX:11350903-11351023 1.0000 120 chrX:12765880-12766000 1.0000 120 chr3L:15634836-15634956 1.0000 120 chr2L:10003117-10003237 1.0000 120 chr2R:13375617-13375737 1.0000 120 chrX:13734986-13735106 1.0000 120 chr3R:16225870-16225990 1.0000 120 chr2L:3711722-3711842 1.0000 120 chrX:16829571-16829691 1.0000 120 chr3R:9756303-9756423 1.0000 120 chr2L:20809353-20809473 1.0000 120 chr3L:3940695-3940815 1.0000 120 chrX:12471455-12471575 1.0000 120 chr2L:2131577-2131697 1.0000 120 chrX:13935730-13935850 1.0000 120 chrX:13972562-13972682 1.0000 120 chr3L:21383602-21383722 1.0000 120 chr3R:9628769-9628889 1.0000 120 chr3L:14003730-14003850 1.0000 120 chrX:1908800-1908920 1.0000 120 chrX:18407506-18407626 1.0000 120 chrX:476575-476695 1.0000 120 chrX:20433739-20433859 1.0000 120 chr2L:5303025-5303145 1.0000 120 chr3L:19100316-19100436 1.0000 120 chr3R:17714442-17714562 1.0000 120 chr3R:6429938-6430058 1.0000 120 chr3R:18243833-18243953 1.0000 120 chr3L:1478587-1478707 1.0000 120 chr3L:19899674-19899794 1.0000 120 chr3L:5643876-5643996 1.0000 120 chr3R:14218016-14218136 1.0000 120 chr2R:17572746-17572866 1.0000 120 chr2R:17676963-17677083 1.0000 120 chrX:9639267-9639387 1.0000 120 chrX:14501125-14501245 1.0000 120 chrX:2032986-2033106 1.0000 120 chr3L:16129020-16129140 1.0000 120 chrX:16607967-16608087 1.0000 120 chr2R:13507462-13507582 1.0000 120 chrX:8176898-8177018 1.0000 120 chr2R:14860755-14860875 1.0000 120 chr3R:20789149-20789269 1.0000 120 chrX:15803900-15804020 1.0000 120 chr3L:690398-690518 1.0000 120 chrX:7968639-7968759 1.0000 120 chr3L:5662723-5662843 1.0000 120 chr3L:3159732-3159852 1.0000 120 chr2R:9130039-9130159 1.0000 120 chr2R:14258920-14259040 1.0000 120 chr2R:9184588-9184708 1.0000 120 chr2L:16537274-16537394 1.0000 120 chrX:10234997-10235117 1.0000 120 chr3R:25594325-25594445 1.0000 120 chr3L:12050047-12050167 1.0000 120 chr3R:11626677-11626797 1.0000 120 chrX:15306652-15306772 1.0000 120 chrX:4614449-4614569 1.0000 120 chrX:2136845-2136965 1.0000 120 chr3R:31250561-31250681 1.0000 120 chr2R:6520255-6520375 1.0000 120 chr3R:21140614-21140734 1.0000 120 chr3L:19906580-19906700 1.0000 120 chr3L:1516763-1516883 1.0000 120 chr3R:24650017-24650137 1.0000 120 chr2R:12279232-12279352 1.0000 120 chr3L:17841131-17841251 1.0000 120 chr2L:16356914-16357034 1.0000 120 chrX:12031580-12031700 1.0000 120 chr2R:12468124-12468244 1.0000 120 chr3R:26945384-26945504 1.0000 120 chrX:13779841-13779961 1.0000 120 chrX:7290718-7290838 1.0000 120 chr3R:13260235-13260355 1.0000 120 chr3R:23240045-23240165 1.0000 120 chrX:9467258-9467378 1.0000 120 chr3L:871831-871951 1.0000 120 chr2L:16721482-16721602 1.0000 120 chr2L:9912805-9912925 1.0000 120 chr2R:8914501-8914621 1.0000 120 chr2L:21307918-21308038 1.0000 120 chr3R:17536934-17537054 1.0000 120 chr3R:10083206-10083326 1.0000 120 chr3L:5845640-5845760 1.0000 120 chr3R:12982317-12982437 1.0000 120 chr3L:7833479-7833599 1.0000 120 chrX:11088923-11089043 1.0000 120 chr3R:8712800-8712920 1.0000 120 chr2R:6173419-6173539 1.0000 120 chr3L:4169981-4170101 1.0000 120 chrX:6255665-6255785 1.0000 120 chr3L:3225358-3225478 1.0000 120 chr3L:12275796-12275916 1.0000 120 chr2L:8959174-8959294 1.0000 120 chrX:11348906-11349026 1.0000 120 chr2L:8031674-8031794 1.0000 120 chr3R:31743380-31743500 1.0000 120 chr3L:2481584-2481704 1.0000 120 chrX:7086694-7086814 1.0000 120 chr3R:8823124-8823244 1.0000 120 chr2L:9669506-9669626 1.0000 120 chr3R:4654674-4654794 1.0000 120 chr2R:5760456-5760576 1.0000 120 chr3L:7529371-7529491 1.0000 120 chr2L:13382508-13382628 1.0000 120 chrX:19637128-19637248 1.0000 120 chrX:6528637-6528757 1.0000 120 chr2L:17590086-17590206 1.0000 120 chr2L:452992-453112 1.0000 120 chrX:9466293-9466413 1.0000 120 chrX:11373470-11373590 1.0000 120 chrX:1899629-1899749 1.0000 120 chrX:3448124-3448244 1.0000 120 chr3L:3225559-3225679 1.0000 120 chrX:16694607-16694727 1.0000 120 chr3R:16305208-16305328 1.0000 120 chrX:5873357-5873477 1.0000 120 chrX:4691351-4691471 1.0000 120 chr2R:17573387-17573507 1.0000 120 chrX:13838347-13838467 1.0000 120 chr3R:23763615-23763735 1.0000 120 chr2L:5302431-5302551 1.0000 120 chr2L:2038727-2038847 1.0000 120 chr2L:9908713-9908833 1.0000 120 chrX:14810568-14810688 1.0000 120 chrX:2685267-2685387 1.0000 120 chr2R:6036551-6036671 1.0000 120 chr2L:8542361-8542481 1.0000 120 chr2L:5007485-5007605 1.0000 120 chr3R:18226306-18226426 1.0000 120 chrX:10930656-10930776 1.0000 120 chr3R:8313093-8313213 1.0000 120 chr3L:5603916-5604036 1.0000 120 chr2L:295018-295138 1.0000 120 chr3R:16573618-16573738 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG14711/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG14711.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.308 C 0.188 G 0.187 T 0.317 Background letter frequencies (from file dataset with add-one prior applied): A 0.308 C 0.188 G 0.187 T 0.317 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GGCAACYC MEME-1 width = 8 sites = 111 llr = 1000 E-value = 7.7e-112 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCAACYC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :3:a9:1: pos.-specific C 1:a::a5a probability G 86::1::: matrix T 1:::::3: bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 * * * Relative 1.5 * ** * * Entropy 1.2 * **** * (13.0 bits) 1.0 ****** * 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCAACCC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAACYC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16305208-16305328 51 4.14e-06 CTATAGAGGT GGCAACCC TAAATAAGGC chrX:9467258-9467378 96 4.14e-06 TCCACTAGTT GGCAACCC TGGTTGCCGC chr3R:23240045-23240165 55 4.14e-06 GATAGGAGGT GGCAACCC CGAGAGAGTC chr3R:26945384-26945504 88 4.14e-06 TGCACTTGAT GGCAACCC TAAACATTGG chrX:15306652-15306772 69 4.14e-06 GCTGATCGGT GGCAACCC TGGACAAGTT chr3R:25594325-25594445 76 4.14e-06 CCAGCTGCTC GGCAACCC TCTTTTTTGT chr2R:14258920-14259040 86 4.14e-06 GCGCAACTCT GGCAACCC TGGTCGAGGG chrX:2032986-2033106 50 4.14e-06 GTGGCAACCT GGCAACCC TGGCCGCTGA chr3R:18243833-18243953 72 4.14e-06 GCGGCCACTT GGCAACCC TATCTGATAA chrX:476575-476695 15 4.14e-06 CCGCACGGCT GGCAACCC TGGCCGATAG chr3R:16225870-16225990 95 4.14e-06 GCGCGGCGAC GGCAACCC TGGCCACCCG chr3L:1798716-1798836 80 4.14e-06 GCAGCCGCTC GGCAACCC TGTCCATCAG chr2L:4973895-4974015 63 4.14e-06 TTTCAAACCT GGCAACCC TGGCTGCCAG chr3R:9343337-9343457 74 4.14e-06 TGGCTGCGAT GGCAACCC TGATTGTTGG chr3L:17051202-17051322 64 4.14e-06 CTGCGCACCT GGCAACCC TGCCGTTCAA chr3L:19792856-19792976 67 4.14e-06 GGTCGAAAAT GGCAACCC TGGCGAGACA chrX:5428355-5428475 64 4.14e-06 TTAACACTCT GGCAACCC TACTCGCTCT chr2L:874252-874372 61 4.14e-06 CGCTAGAGCA GGCAACCC TAGTTTACCC chr2L:4382674-4382794 62 4.14e-06 ATCAACAACG GGCAACCC TGTTTTCAGC chr2L:10211132-10211252 39 4.14e-06 CGCTGACGCT GGCAACCC TGCTGTATTT chr2R:21000653-21000773 79 4.14e-06 TCACTAAGGT GGCAACCC TGCCGCAAAC chr3R:24931945-24932065 53 4.14e-06 CGCTGATGGT GGCAACCC TGGCCGCTGT chr3R:31580015-31580135 30 4.14e-06 CGCAACGAAC GGCAACCC CGCTTATTTT chr2L:15062215-15062335 88 4.14e-06 TAGAGAGCTT GGCAACCC TAGAACATGA chr2L:8041004-8041124 95 4.14e-06 CAGTCAGCCT GGCAACCC AGAAAAGTAC chr3L:18032963-18033083 95 4.14e-06 GCAAACTAAA GGCAACCC TGCAATTAGT chr3R:16573618-16573738 10 1.11e-05 CTGTGGCAT GGCAACTC TGAGCGATCA chr3R:4654674-4654794 62 1.11e-05 AAGTCGTTGT GGCAACTC TGTCTGTGGC chr2R:12279232-12279352 53 1.11e-05 CATAGTCCTT GGCAACTC TCCCCGAAAA chr3L:690398-690518 92 1.11e-05 TCAAATGGCT GGCAACTC TGCGATGTTG chr2R:13507462-13507582 84 1.11e-05 TCCACCATGT GGCAACTC TGGCGCACAG chr3R:6429938-6430058 87 1.11e-05 GCTCTGGGAT GGCAACTC TGTCGCTGTT chr3L:14362199-14362319 71 1.11e-05 TATGCGACAC GGCAACTC TTTTTCCACC chr2R:9446834-9446954 64 1.11e-05 ACATAAATAT GGCAACTC TGCTCGTAAA chr3R:24659539-24659659 58 1.11e-05 TCCCGCACTT GGCAACTC TGGCTGCCAG chr3R:31715155-31715275 81 1.11e-05 CTGGCCAAGG GGCAACTC TACACTTGCA chr2L:20891293-20891413 36 1.11e-05 CATACTTTAG GGCAACTC ATTAAAATAC chr4:1029318-1029438 92 1.11e-05 GACAAAAATT GGCAACTC TGAATAATTA chrX:2636275-2636395 29 1.11e-05 ACTATCGCCT GGCAACTC TGCTCAGTTA chr3R:27273223-27273343 61 1.11e-05 CGGCTCAGGT GGCAACTC TGGTTGCCGA chr3L:4429042-4429162 71 1.11e-05 TGTGGGCGCC GGCAACTC TGGAGGCCAA chr3L:18034648-18034768 57 1.11e-05 agtTTGCGGT GGCAACTC TGGCAGCACA chr2L:295018-295138 106 1.80e-05 CAGAAGCATT GACAACCC TATCGAT chrX:10930656-10930776 62 1.80e-05 GATTGCCTTT GACAACCC TGCAGTTGCA chr2L:452992-453112 94 1.80e-05 GAGAAGTGGT GACAACCC TAACGACAGT chr3L:871831-871951 81 1.80e-05 ATCGAATTGC GACAACCC TGGGAGCAGG chr3R:13260235-13260355 72 1.80e-05 TGCGACGGGT GACAACCC TGCCTGCAGT chr3L:19906580-19906700 32 1.80e-05 TCAATAGTTT GACAACCC TAAAACCATC chrX:10234997-10235117 63 1.80e-05 AACCCTAGGC GACAACCC TGCAATTAAT chrX:7968639-7968759 96 1.80e-05 TTTCTTGCTT GACAACCC TATGTTAAGT chrX:20433739-20433859 60 1.80e-05 TCCATGGGCT GACAACCC TGTTTTGAAA chr2L:18119820-18119940 105 1.80e-05 TAGGAAACCT GACAACCC TGGACCAT chr2R:7785906-7786026 36 1.80e-05 GACAAACGCT GACAACCC TGTCAACGCG chr2R:20281346-20281466 62 1.80e-05 AAAGCCACCT GACAACCC CCGAATAGAG chr2L:4965560-4965680 105 1.80e-05 TCGATGAGCT GACAACCC TGTTTGTG chr2R:17019872-17019992 97 1.80e-05 TGAACCACTT GACAACCC TATATATAAT chrX:19637128-19637248 81 2.73e-05 GGTGTGTGCT GGCAACAC TGACGCGAAT chr3R:31743380-31743500 49 2.73e-05 CCGATAGGTT GGCAGCCC TGGTTTGGGC chr2L:8031674-8031794 77 2.73e-05 GTAAGCCGTT GGCAACAC TAGAACGCAA chr3R:9628769-9628889 5 2.73e-05 GAGT GGCAACAC CGTTTTTCTG chrX:12471455-12471575 69 2.73e-05 TAAGTAAGGT GGCAGCCC TGGCAAAAGT chr3L:11119546-11119666 62 2.73e-05 AACGAACGTT GGCAACAC TGCTCCACTC chr3R:9679883-9680003 52 2.73e-05 TTGTTATGTT GGCAACAC TGTTGCTGTG chr2R:13206673-13206793 103 2.73e-05 ATCGATTGGC GGCAACAC GGGATTTTCt chr2R:16008228-16008348 60 2.73e-05 GAAAGATGTT GGCAACAC TGCCCACTAT chr2R:17870978-17871098 79 2.73e-05 GCGCGCACAT GGCAACAC TGGCGTCACA chrX:6858624-6858744 69 2.73e-05 GTCATACGGT GGCAGCCC TGATCGAGAG chr2L:11990804-11990924 69 2.73e-05 GCTCTAGAAT GGCAACAC TGTTTTGCAC chr3L:17841131-17841251 70 3.88e-05 TCAGTGAAGC GACAACTC TGGTAAAAGC chrX:2136845-2136965 59 3.88e-05 GCGCCACAGC GACAACTC TACTTTTCGT chr2R:18426320-18426440 53 3.88e-05 TAATAAAGTT GACAACTC TGATTTAACC chrX:18884150-18884270 31 3.88e-05 TAGATGGGGC GACAACTC TGTTCAGGAC chrX:10906485-10906605 112 3.88e-05 CAACACTGGC GACAACTC A chr2R:12321202-12321322 55 3.88e-05 CACATAACCT GACAACTC TGAGACAAAA chr3L:3419977-3420097 78 3.88e-05 CTCCAAGCTC GACAACTC TGGCTGGAAG chr2R:10805715-10805835 51 3.88e-05 GACGTATGTT GACAACTC TGGGATATAA chr2R:8914501-8914621 38 4.29e-05 AGATCCGTTT GGCAACGC TGCGCAAGTA chr3L:14003730-14003850 48 5.12e-05 GCACAGAGTT GCCAACCC GAAGCAATTG chr2L:10003117-10003237 74 5.12e-05 CATGACCCCC CGCAACCC ACAACCACAG chrX:1899629-1899749 80 5.55e-05 TACTCGCGTA GGCAGCTC AGAAAGAATC chr2L:16356914-16357034 88 7.08e-05 TGAGCTTATT GACAACAC TGTGTGATTT chr2R:17676963-17677083 28 7.08e-05 TTTCATTAGC GACAGCCC AGGGTATTAT chr2R:17572746-17572866 86 7.08e-05 AGCAAGGTGT GACAACAC TGTGCGGCCT chr3L:3159529-3159649 64 7.08e-05 TAATCTACTC GACAGCCC TACTTCGGTA chr3L:3225559-3225679 81 7.78e-05 TGCAATCGCT TGCAACCC TGACTTGCGA chr2L:17590086-17590206 46 7.78e-05 AGTTTTCTTA TGCAACCC TGCATCATAA chrX:1908800-1908920 70 7.78e-05 GAGCTGCGGT TGCAACCC TATCCGCTCA chr3R:12982317-12982437 3 8.19e-05 GT GGCAGCAC GTACACCAGT chr2R:13183878-13183998 68 8.19e-05 CGCGCGCATG GGCAGCAC TGATGCTCTC chr4:416360-416480 13 1.14e-04 TAAAATTTCG CACAACCC TTTTTTCTAT chr3R:18226306-18226426 45 1.21e-04 CCTCAGCGAA AGCAACCC TGTTCTCCCC chr3R:10083206-10083326 70 1.28e-04 CGGCGACAAC GACAGCTC TGTCATTTTC chr2R:14860755-14860875 65 1.33e-04 GAGTCAACAC GGCCACCC TAAAATTGGC chrX:9466293-9466413 12 1.75e-04 TATGTGCGTT GCCAACAC TGCGTATGAG chr3L:3225358-3225478 109 1.89e-04 GTCTTCCGCA GGCTACTC TCTA chr3L:1478587-1478707 59 1.89e-04 TCATATGGGT GGCTACTC TGTTCTTGCG chr3R:20789149-20789269 54 1.96e-04 AACAAGCGGC GACTACCC TGTTGCCATA chr3L:5643876-5643996 66 2.23e-04 ATAACACGAA TGCAACAC TGTGAAAATT chr3R:14901556-14901676 47 2.23e-04 GGCCGCGACG TGCAACAC TGCGCCGAGG chr2R:21312246-21312366 55 2.23e-04 TTTATTTTTA CACAACTC TGGAGTTGCC chr3L:4116642-4116762 50 2.23e-04 TTGCTATCTT CACAACTC ATATCTAAAA chrX:11611117-11611237 4 2.23e-04 Gca cacaactc acacacacac chr2R:24535380-24535500 30 2.43e-04 GGGTTGTCAT GCCAACGC AAAGCAATTG chrX:22455082-22455202 60 2.43e-04 ACATCGCGAC CGCAACGC ATCCGTTTGG chrX:12632586-12632706 33 2.43e-04 GGTCAGGGTT GCCAACGC ATTGGGCTAA chr3L:15976853-15976973 72 2.43e-04 ACGGTTCGTA AGCAACTC TATCGCGCTC chr3R:25476920-25477040 78 2.54e-04 TACAAAACGT AACAACCC TCCCGAAATT chr3L:5845640-5845760 93 3.09e-04 ATCTCACGGA TACAACTC AAACGTATCT chr3R:20949838-20949958 109 3.09e-04 AGTCCGTATT GCCAGCTC TATT chr2R:6520255-6520375 100 3.31e-04 GTTGAATGCA CACAGCCC GTCGTGGCGG chrX:17885614-17885734 74 3.31e-04 GTGTAAAAAG TGCAACGC AAGCAGGGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAACYC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16305208-16305328 4.1e-06 50_[+1]_62 chrX:9467258-9467378 4.1e-06 95_[+1]_17 chr3R:23240045-23240165 4.1e-06 54_[+1]_58 chr3R:26945384-26945504 4.1e-06 87_[+1]_25 chrX:15306652-15306772 4.1e-06 68_[+1]_44 chr3R:25594325-25594445 4.1e-06 75_[+1]_37 chr2R:14258920-14259040 4.1e-06 85_[+1]_27 chrX:2032986-2033106 4.1e-06 49_[+1]_63 chr3R:18243833-18243953 4.1e-06 71_[+1]_41 chrX:476575-476695 4.1e-06 14_[+1]_98 chr3R:16225870-16225990 4.1e-06 94_[+1]_18 chr3L:1798716-1798836 4.1e-06 79_[+1]_33 chr2L:4973895-4974015 4.1e-06 62_[+1]_50 chr3R:9343337-9343457 4.1e-06 73_[+1]_39 chr3L:17051202-17051322 4.1e-06 63_[+1]_49 chr3L:19792856-19792976 4.1e-06 66_[+1]_46 chrX:5428355-5428475 4.1e-06 63_[+1]_49 chr2L:874252-874372 4.1e-06 60_[+1]_52 chr2L:4382674-4382794 4.1e-06 61_[+1]_51 chr2L:10211132-10211252 4.1e-06 38_[+1]_74 chr2R:21000653-21000773 4.1e-06 78_[+1]_34 chr3R:24931945-24932065 4.1e-06 52_[+1]_60 chr3R:31580015-31580135 4.1e-06 29_[+1]_83 chr2L:15062215-15062335 4.1e-06 87_[+1]_25 chr2L:8041004-8041124 4.1e-06 94_[+1]_18 chr3L:18032963-18033083 4.1e-06 94_[+1]_18 chr3R:16573618-16573738 1.1e-05 9_[+1]_103 chr3R:4654674-4654794 1.1e-05 61_[+1]_51 chr2R:12279232-12279352 1.1e-05 52_[+1]_60 chr3L:690398-690518 1.1e-05 91_[+1]_21 chr2R:13507462-13507582 1.1e-05 83_[+1]_29 chr3R:6429938-6430058 1.1e-05 86_[+1]_26 chr3L:14362199-14362319 1.1e-05 70_[+1]_42 chr2R:9446834-9446954 1.1e-05 63_[+1]_49 chr3R:24659539-24659659 1.1e-05 57_[+1]_55 chr3R:31715155-31715275 1.1e-05 80_[+1]_32 chr2L:20891293-20891413 1.1e-05 35_[+1]_77 chr4:1029318-1029438 1.1e-05 91_[+1]_21 chrX:2636275-2636395 1.1e-05 28_[+1]_84 chr3R:27273223-27273343 1.1e-05 60_[+1]_52 chr3L:4429042-4429162 1.1e-05 70_[+1]_42 chr3L:18034648-18034768 1.1e-05 56_[+1]_56 chr2L:295018-295138 1.8e-05 105_[+1]_7 chrX:10930656-10930776 1.8e-05 61_[+1]_51 chr2L:452992-453112 1.8e-05 93_[+1]_19 chr3L:871831-871951 1.8e-05 80_[+1]_32 chr3R:13260235-13260355 1.8e-05 71_[+1]_41 chr3L:19906580-19906700 1.8e-05 31_[+1]_81 chrX:10234997-10235117 1.8e-05 62_[+1]_50 chrX:7968639-7968759 1.8e-05 95_[+1]_17 chrX:20433739-20433859 1.8e-05 59_[+1]_53 chr2L:18119820-18119940 1.8e-05 104_[+1]_8 chr2R:7785906-7786026 1.8e-05 35_[+1]_77 chr2R:20281346-20281466 1.8e-05 61_[+1]_51 chr2L:4965560-4965680 1.8e-05 104_[+1]_8 chr2R:17019872-17019992 1.8e-05 96_[+1]_16 chrX:19637128-19637248 2.7e-05 80_[+1]_32 chr3R:31743380-31743500 2.7e-05 48_[+1]_64 chr2L:8031674-8031794 2.7e-05 76_[+1]_36 chr3R:9628769-9628889 2.7e-05 4_[+1]_108 chrX:12471455-12471575 2.7e-05 68_[+1]_44 chr3L:11119546-11119666 2.7e-05 61_[+1]_51 chr3R:9679883-9680003 2.7e-05 51_[+1]_61 chr2R:13206673-13206793 2.7e-05 102_[+1]_10 chr2R:16008228-16008348 2.7e-05 59_[+1]_53 chr2R:17870978-17871098 2.7e-05 78_[+1]_34 chrX:6858624-6858744 2.7e-05 68_[+1]_44 chr2L:11990804-11990924 2.7e-05 68_[+1]_44 chr3L:17841131-17841251 3.9e-05 69_[+1]_43 chrX:2136845-2136965 3.9e-05 58_[+1]_54 chr2R:18426320-18426440 3.9e-05 52_[+1]_60 chrX:18884150-18884270 3.9e-05 30_[+1]_82 chrX:10906485-10906605 3.9e-05 111_[+1]_1 chr2R:12321202-12321322 3.9e-05 54_[+1]_58 chr3L:3419977-3420097 3.9e-05 77_[+1]_35 chr2R:10805715-10805835 3.9e-05 50_[+1]_62 chr2R:8914501-8914621 4.3e-05 37_[+1]_75 chr3L:14003730-14003850 5.1e-05 47_[+1]_65 chr2L:10003117-10003237 5.1e-05 73_[+1]_39 chrX:1899629-1899749 5.5e-05 79_[+1]_33 chr2L:16356914-16357034 7.1e-05 87_[+1]_25 chr2R:17676963-17677083 7.1e-05 27_[+1]_85 chr2R:17572746-17572866 7.1e-05 85_[+1]_27 chr3L:3159529-3159649 7.1e-05 63_[+1]_49 chr3L:3225559-3225679 7.8e-05 80_[+1]_32 chr2L:17590086-17590206 7.8e-05 45_[+1]_67 chrX:1908800-1908920 7.8e-05 69_[+1]_43 chr3R:12982317-12982437 8.2e-05 2_[+1]_110 chr2R:13183878-13183998 8.2e-05 67_[+1]_45 chr4:416360-416480 0.00011 12_[+1]_100 chr3R:18226306-18226426 0.00012 44_[+1]_68 chr3R:10083206-10083326 0.00013 69_[+1]_43 chr2R:14860755-14860875 0.00013 64_[+1]_48 chrX:9466293-9466413 0.00017 11_[+1]_101 chr3L:3225358-3225478 0.00019 108_[+1]_4 chr3L:1478587-1478707 0.00019 58_[+1]_54 chr3R:20789149-20789269 0.0002 53_[+1]_59 chr3L:5643876-5643996 0.00022 65_[+1]_47 chr3R:14901556-14901676 0.00022 46_[+1]_66 chr2R:21312246-21312366 0.00022 54_[+1]_58 chr3L:4116642-4116762 0.00022 49_[+1]_63 chrX:11611117-11611237 0.00022 3_[+1]_109 chr2R:24535380-24535500 0.00024 29_[+1]_83 chrX:22455082-22455202 0.00024 59_[+1]_53 chrX:12632586-12632706 0.00024 32_[+1]_80 chr3L:15976853-15976973 0.00024 71_[+1]_41 chr3R:25476920-25477040 0.00025 77_[+1]_35 chr3L:5845640-5845760 0.00031 92_[+1]_20 chr3R:20949838-20949958 0.00031 108_[+1]_4 chr2R:6520255-6520375 0.00033 99_[+1]_13 chrX:17885614-17885734 0.00033 73_[+1]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAACYC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCAACYC width=8 seqs=111 chr3R:16305208-16305328 ( 51) GGCAACCC 1 chrX:9467258-9467378 ( 96) GGCAACCC 1 chr3R:23240045-23240165 ( 55) GGCAACCC 1 chr3R:26945384-26945504 ( 88) GGCAACCC 1 chrX:15306652-15306772 ( 69) GGCAACCC 1 chr3R:25594325-25594445 ( 76) GGCAACCC 1 chr2R:14258920-14259040 ( 86) GGCAACCC 1 chrX:2032986-2033106 ( 50) GGCAACCC 1 chr3R:18243833-18243953 ( 72) GGCAACCC 1 chrX:476575-476695 ( 15) GGCAACCC 1 chr3R:16225870-16225990 ( 95) GGCAACCC 1 chr3L:1798716-1798836 ( 80) GGCAACCC 1 chr2L:4973895-4974015 ( 63) GGCAACCC 1 chr3R:9343337-9343457 ( 74) GGCAACCC 1 chr3L:17051202-17051322 ( 64) GGCAACCC 1 chr3L:19792856-19792976 ( 67) GGCAACCC 1 chrX:5428355-5428475 ( 64) GGCAACCC 1 chr2L:874252-874372 ( 61) GGCAACCC 1 chr2L:4382674-4382794 ( 62) GGCAACCC 1 chr2L:10211132-10211252 ( 39) GGCAACCC 1 chr2R:21000653-21000773 ( 79) GGCAACCC 1 chr3R:24931945-24932065 ( 53) GGCAACCC 1 chr3R:31580015-31580135 ( 30) GGCAACCC 1 chr2L:15062215-15062335 ( 88) GGCAACCC 1 chr2L:8041004-8041124 ( 95) GGCAACCC 1 chr3L:18032963-18033083 ( 95) GGCAACCC 1 chr3R:16573618-16573738 ( 10) GGCAACTC 1 chr3R:4654674-4654794 ( 62) GGCAACTC 1 chr2R:12279232-12279352 ( 53) GGCAACTC 1 chr3L:690398-690518 ( 92) GGCAACTC 1 chr2R:13507462-13507582 ( 84) GGCAACTC 1 chr3R:6429938-6430058 ( 87) GGCAACTC 1 chr3L:14362199-14362319 ( 71) GGCAACTC 1 chr2R:9446834-9446954 ( 64) GGCAACTC 1 chr3R:24659539-24659659 ( 58) GGCAACTC 1 chr3R:31715155-31715275 ( 81) GGCAACTC 1 chr2L:20891293-20891413 ( 36) GGCAACTC 1 chr4:1029318-1029438 ( 92) GGCAACTC 1 chrX:2636275-2636395 ( 29) GGCAACTC 1 chr3R:27273223-27273343 ( 61) GGCAACTC 1 chr3L:4429042-4429162 ( 71) GGCAACTC 1 chr3L:18034648-18034768 ( 57) GGCAACTC 1 chr2L:295018-295138 ( 106) GACAACCC 1 chrX:10930656-10930776 ( 62) GACAACCC 1 chr2L:452992-453112 ( 94) GACAACCC 1 chr3L:871831-871951 ( 81) GACAACCC 1 chr3R:13260235-13260355 ( 72) GACAACCC 1 chr3L:19906580-19906700 ( 32) GACAACCC 1 chrX:10234997-10235117 ( 63) GACAACCC 1 chrX:7968639-7968759 ( 96) GACAACCC 1 chrX:20433739-20433859 ( 60) GACAACCC 1 chr2L:18119820-18119940 ( 105) GACAACCC 1 chr2R:7785906-7786026 ( 36) GACAACCC 1 chr2R:20281346-20281466 ( 62) GACAACCC 1 chr2L:4965560-4965680 ( 105) GACAACCC 1 chr2R:17019872-17019992 ( 97) GACAACCC 1 chrX:19637128-19637248 ( 81) GGCAACAC 1 chr3R:31743380-31743500 ( 49) GGCAGCCC 1 chr2L:8031674-8031794 ( 77) GGCAACAC 1 chr3R:9628769-9628889 ( 5) GGCAACAC 1 chrX:12471455-12471575 ( 69) GGCAGCCC 1 chr3L:11119546-11119666 ( 62) GGCAACAC 1 chr3R:9679883-9680003 ( 52) GGCAACAC 1 chr2R:13206673-13206793 ( 103) GGCAACAC 1 chr2R:16008228-16008348 ( 60) GGCAACAC 1 chr2R:17870978-17871098 ( 79) GGCAACAC 1 chrX:6858624-6858744 ( 69) GGCAGCCC 1 chr2L:11990804-11990924 ( 69) GGCAACAC 1 chr3L:17841131-17841251 ( 70) GACAACTC 1 chrX:2136845-2136965 ( 59) GACAACTC 1 chr2R:18426320-18426440 ( 53) GACAACTC 1 chrX:18884150-18884270 ( 31) GACAACTC 1 chrX:10906485-10906605 ( 112) GACAACTC 1 chr2R:12321202-12321322 ( 55) GACAACTC 1 chr3L:3419977-3420097 ( 78) GACAACTC 1 chr2R:10805715-10805835 ( 51) GACAACTC 1 chr2R:8914501-8914621 ( 38) GGCAACGC 1 chr3L:14003730-14003850 ( 48) GCCAACCC 1 chr2L:10003117-10003237 ( 74) CGCAACCC 1 chrX:1899629-1899749 ( 80) GGCAGCTC 1 chr2L:16356914-16357034 ( 88) GACAACAC 1 chr2R:17676963-17677083 ( 28) GACAGCCC 1 chr2R:17572746-17572866 ( 86) GACAACAC 1 chr3L:3159529-3159649 ( 64) GACAGCCC 1 chr3L:3225559-3225679 ( 81) TGCAACCC 1 chr2L:17590086-17590206 ( 46) TGCAACCC 1 chrX:1908800-1908920 ( 70) TGCAACCC 1 chr3R:12982317-12982437 ( 3) GGCAGCAC 1 chr2R:13183878-13183998 ( 68) GGCAGCAC 1 chr4:416360-416480 ( 13) CACAACCC 1 chr3R:18226306-18226426 ( 45) AGCAACCC 1 chr3R:10083206-10083326 ( 70) GACAGCTC 1 chr2R:14860755-14860875 ( 65) GGCCACCC 1 chrX:9466293-9466413 ( 12) GCCAACAC 1 chr3L:3225358-3225478 ( 109) GGCTACTC 1 chr3L:1478587-1478707 ( 59) GGCTACTC 1 chr3R:20789149-20789269 ( 54) GACTACCC 1 chr3L:5643876-5643996 ( 66) TGCAACAC 1 chr3R:14901556-14901676 ( 47) TGCAACAC 1 chr2R:21312246-21312366 ( 55) CACAACTC 1 chr3L:4116642-4116762 ( 50) CACAACTC 1 chrX:11611117-11611237 ( 4) CACAACTC 1 chr2R:24535380-24535500 ( 30) GCCAACGC 1 chrX:22455082-22455202 ( 60) CGCAACGC 1 chrX:12632586-12632706 ( 33) GCCAACGC 1 chr3L:15976853-15976973 ( 72) AGCAACTC 1 chr3R:25476920-25477040 ( 78) AACAACCC 1 chr3L:5845640-5845760 ( 93) TACAACTC 1 chr3R:20949838-20949958 ( 109) GCCAGCTC 1 chr2R:6520255-6520375 ( 100) CACAGCCC 1 chrX:17885614-17885734 ( 74) TGCAACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAACYC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.94656 E= 7.7e-112 -351 -158 218 -233 3 -206 178 -1344 -1344 241 -1344 -1344 164 -438 -1344 -355 155 -1344 -92 -1344 -1344 241 -1344 -1344 -110 142 -205 -5 -1344 241 -1344 -1344 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAACYC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 111 E= 7.7e-112 0.027027 0.063063 0.846847 0.063063 0.315315 0.045045 0.639640 0.000000 0.000000 1.000000 0.000000 0.000000 0.963964 0.009009 0.000000 0.027027 0.900901 0.000000 0.099099 0.000000 0.000000 1.000000 0.000000 0.000000 0.144144 0.504505 0.045045 0.306306 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCAACYC MEME-1 regular expression -------------------------------------------------------------------------------- G[GA]CAAC[CT]C -------------------------------------------------------------------------------- Time 7.43 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGTTGCC MEME-2 width = 8 sites = 79 llr = 754 E-value = 1.1e-080 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGTTGCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :3:::::: pos.-specific C :1:1::7a probability G a6a:1a:: matrix T :1:99:3: bits 2.4 * 2.2 * * * * 1.9 * * * * 1.7 * * * * Relative 1.5 * * **** Entropy 1.2 * ****** (13.8 bits) 1.0 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGTTGCC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTGCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:5007485-5007605 110 4.34e-06 GTAAATTAGC GGGTTGCC TTT chr3L:7529371-7529491 65 4.34e-06 AGTGGATCCA GGGTTGCC AGGGGCGTGG chr3L:4169981-4170101 63 4.34e-06 CCTGGGAAGA GGGTTGCC TCTGCTTCAA chr3L:1516763-1516883 68 4.34e-06 TTAAGCGCCA GGGTTGCC AGCGGGCCGG chr2R:6520255-6520375 52 4.34e-06 GCCCCTCCCA GGGTTGCC CTGCCTCGGC chr3L:5662723-5662843 11 4.34e-06 ACAGATGTTA GGGTTGCC ACGCCACCTA chr3L:19899674-19899794 51 4.34e-06 CAGATCGCCA GGGTTGCC ACCTACAATC chr3L:19100316-19100436 62 4.34e-06 TAGTGTTCTA GGGTTGCC AACATCAAAA chr3L:22871077-22871197 32 4.34e-06 GCAGGCGCCA GGGTTGCC AACTGCGTTG chr3R:23902716-23902836 56 4.34e-06 TTGACAGCCA GGGTTGCC GTGGCGCCGA chr3L:5927673-5927793 74 4.34e-06 CACAGTTTTA GGGTTGCC AGCTGTTTTT chrX:2061938-2062058 67 4.34e-06 ACACACATGA GGGTTGCC AAGTGAGCGC chr3R:7944958-7945078 37 4.34e-06 TTATCGGCCA GGGTTGCC AGGTGTATGA chr4:1029318-1029438 37 4.34e-06 TAGTTTTAAA GGGTTGCC TAATAATCGC chr3R:25245123-25245243 41 4.34e-06 TCCCAGAACA GGGTTGCC GTCGCACAAA chr2R:13206673-13206793 33 4.34e-06 TCCACTATCA GGGTTGCC ACATTTTCAG chrX:17885614-17885734 87 4.34e-06 AACGCAAGCA GGGTTGCC ACCTTTTGCG chr3R:14630349-14630469 28 4.34e-06 TCCCGCAACA GGGTTGCC ATGCCATTCC chr2R:20281143-20281263 22 4.34e-06 CTTCGGTTCA GGGTTGCC AGCCGAGTGC chrX:11125120-11125240 88 4.34e-06 ATTGCGGACA GGGTTGCC ACCACAACGC chr2L:20830103-20830223 34 4.34e-06 TTTCGGATGA GGGTTGCC AACTAGTTGC chr2R:6036551-6036671 110 1.15e-05 TAGACCTTTA GAGTTGCC CGT chrX:1899629-1899749 31 1.15e-05 GTGCTGCGCA GAGTTGCC ACACATCCAA chr3R:12982317-12982437 30 1.15e-05 TAAAGGGCCA GAGTTGCC ATCCTAACTT chr2L:9912805-9912925 74 1.15e-05 AAAGTTGCCA GAGTTGCC AGATGTTATC chr3R:20789149-20789269 24 1.15e-05 GCATGGGACA GAGTTGCC ACCGCTGGGG chr3L:16129020-16129140 33 1.15e-05 CTGGGGAGCG GAGTTGCC GAATCTCCAC chr2L:3711722-3711842 14 1.15e-05 TTCGATGGCA GAGTTGCC AACTATCGTT chr3R:16225870-16225990 56 1.15e-05 GCATGTGGCA GAGTTGCC AAAGCGCAGA chr2R:21312246-21312366 65 1.15e-05 CACAACTCTG GAGTTGCC ATCCCACTTT chr2L:7405055-7405175 64 1.15e-05 TACGGGGCCA GAGTTGCC ACCAACCATT chr2L:21071597-21071717 57 1.15e-05 TTGGTAATCA GAGTTGCC AGGTGGCTTC chrX:6858624-6858744 49 1.15e-05 AGTGAAAACA GAGTTGCC ACGTCATACG chrX:254814-254934 40 1.15e-05 ACCCCCTTCA GAGTTGCC ACACGTTGTT chr2R:17452606-17452726 51 1.15e-05 TCGAACGATA GAGTTGCC ATTTAATTGA chr3L:8985574-8985694 65 1.15e-05 TGTTATTTAG GAGTTGCC AGGCTTGCAG chr3L:3419977-3420097 26 1.15e-05 CTCTCGGGCA GAGTTGCC ATAAATAAGA chr2L:9908713-9908833 55 1.88e-05 GATCCGTTTA GGGTTGTC GAGCGGCTCG chr3L:3225358-3225478 29 1.88e-05 GCACGTTTCA GGGTTGTC GCTTCGCAGG chr2R:12468124-12468244 28 1.88e-05 AAATATGGCA GGGTTGTC AACAAACTAC chr3R:24650017-24650137 25 1.88e-05 GGCAGGGGCA GGGTTGTC AGGCTGTGTG chrX:16607967-16608087 74 1.88e-05 CGTTGGTGAA GGGTTGTC ACCCACAAAT chr2L:10003117-10003237 55 1.88e-05 TTACCGAGCA GGGTTGTC GCATGACCCC chr3R:12997556-12997676 24 1.88e-05 AATTCGGTCA GGGTTGTC AACACATCGA chr2R:24535380-24535500 20 1.88e-05 CCTTATTGCA GGGTTGTC ATGCCAACGC chrX:5746309-5746429 32 1.88e-05 AGCAGCGGCA GGGTTGTC AGAGCTCGAA chr3R:9423357-9423477 69 1.88e-05 TTGTCAGCTA GGGTTGTC AAGTAATTTG chr3L:3159529-3159649 34 1.88e-05 TTGGAGCCTA GGGTTGTC AGTGCGCCAA chr3R:18245346-18245466 71 1.88e-05 TGCCTTTGCA GGGTTGTC GCTAGTTTAT chrX:19498902-19499022 82 1.88e-05 tgggttgtct gggttgtc GGGGCTGTGG chr2L:8302908-8303028 60 1.88e-05 CAGCTGATTA GGGTTGTC AACTCAATTT chr2R:6810482-6810602 21 1.88e-05 TTATTGCTTA GGGTTGTC AAATACCCTT chr3R:14901556-14901676 64 2.14e-05 CTGCGCCGAG GGGCTGCC AACTTTGGGG chr3L:871831-871951 20 2.40e-05 GGTTGCAGGC GGGTGGCC ACCCTGGCCA chr2R:13507462-13507582 54 2.40e-05 ATCGATAAGT GGGTGGCC TATCGGACAA chr3R:7085570-7085690 57 2.40e-05 GAATTTCGTA GGGTGGCC AACTACACCA chr3R:9628769-9628889 60 2.83e-05 GATATAGACA GCGTTGCC ATTCGGCCGT chr2R:7785906-7786026 51 2.83e-05 CCCTGTCAAC GCGTTGCC AACGCTAAGC chr2R:7930991-7931111 86 2.83e-05 AATTTATTCA GCGTTGCC ATATCAATTA chr3R:8313093-8313213 36 3.57e-05 CCCGATATCA GTGTTGCC ACTTGTCGCA chrX:9466293-9466413 44 3.57e-05 TTAATACGCA GTGTTGCC GCTGTTGAAA chrX:7290718-7290838 92 3.57e-05 CAGGTTGCAA GTGTTGCC ATAACATTTA chr2L:15062215-15062335 16 4.77e-05 TTATGTTTCA GAGTTGTC GAAGCACCTT chr2R:8435049-8435169 49 4.77e-05 CTTTTGGCCA GAGTTGTC AACGTGCCAC chr2L:8542361-8542481 50 5.20e-05 AAAGAGTGTA GAGCTGCC AGGTTTCAAT chr2L:16356914-16357034 56 5.20e-05 AAATCCTTCA GAGCTGCC AGATAAGTTA chrX:1908800-1908920 19 6.06e-05 TTTTTGGTCA GGGCTGTC GCCCCTCGCA chr2R:8914501-8914621 56 1.01e-04 TGCGCAAGTA GGGTTACC AGGTAGCTGA chrX:9467258-9467378 104 1.01e-04 TTGGCAACCC TGGTTGCC GCAGCAACA chr3L:3143441-3143561 37 1.01e-04 ATGTGTTCTA GGGTTACC GCAGCGCGCG chr3R:27273223-27273343 69 1.01e-04 GTGGCAACTC TGGTTGCC GATTCGTGTG chr3R:31580015-31580135 83 1.01e-04 ACCCAGCGTC GTGTTGTC TCGTTTCAAA chr2R:13183878-13183998 41 1.16e-04 TGGCGCGCAA GTGCTGCC AAGAGTCAGC chrX:11611117-11611237 52 1.16e-04 GCGAGTGTCA GGGTTGCG CGGCTTCGCG chr3L:995810-995930 56 1.16e-04 TAGAACTGTA GGGTTCCC AACCATTTCA chr2R:9964990-9965110 74 1.30e-04 GTGACGTGCG GTGTGGCC AGAGTTGCGA chr3L:18032963-18033083 9 1.38e-04 ATGCGCTT GGGTTGCA TTCGCAGCTA chrX:12471455-12471575 95 1.47e-04 GTTTGCGAGA GAGCGGCC TCTCTCTTTC chr2L:21307918-21308038 80 2.17e-04 CTCTATGATT GCGCTGTC GTTTGCAGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTGCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:5007485-5007605 4.3e-06 109_[+2]_3 chr3L:7529371-7529491 4.3e-06 64_[+2]_48 chr3L:4169981-4170101 4.3e-06 62_[+2]_50 chr3L:1516763-1516883 4.3e-06 67_[+2]_45 chr2R:6520255-6520375 4.3e-06 51_[+2]_61 chr3L:5662723-5662843 4.3e-06 10_[+2]_102 chr3L:19899674-19899794 4.3e-06 50_[+2]_62 chr3L:19100316-19100436 4.3e-06 61_[+2]_51 chr3L:22871077-22871197 4.3e-06 31_[+2]_81 chr3R:23902716-23902836 4.3e-06 55_[+2]_57 chr3L:5927673-5927793 4.3e-06 73_[+2]_39 chrX:2061938-2062058 4.3e-06 66_[+2]_46 chr3R:7944958-7945078 4.3e-06 36_[+2]_76 chr4:1029318-1029438 4.3e-06 36_[+2]_76 chr3R:25245123-25245243 4.3e-06 40_[+2]_72 chr2R:13206673-13206793 4.3e-06 32_[+2]_80 chrX:17885614-17885734 4.3e-06 86_[+2]_26 chr3R:14630349-14630469 4.3e-06 27_[+2]_85 chr2R:20281143-20281263 4.3e-06 21_[+2]_91 chrX:11125120-11125240 4.3e-06 87_[+2]_25 chr2L:20830103-20830223 4.3e-06 33_[+2]_79 chr2R:6036551-6036671 1.1e-05 109_[+2]_3 chrX:1899629-1899749 1.1e-05 30_[+2]_82 chr3R:12982317-12982437 1.1e-05 29_[+2]_83 chr2L:9912805-9912925 1.1e-05 73_[+2]_39 chr3R:20789149-20789269 1.1e-05 23_[+2]_89 chr3L:16129020-16129140 1.1e-05 32_[+2]_80 chr2L:3711722-3711842 1.1e-05 13_[+2]_99 chr3R:16225870-16225990 1.1e-05 55_[+2]_57 chr2R:21312246-21312366 1.1e-05 64_[+2]_48 chr2L:7405055-7405175 1.1e-05 63_[+2]_49 chr2L:21071597-21071717 1.1e-05 56_[+2]_56 chrX:6858624-6858744 1.1e-05 48_[+2]_64 chrX:254814-254934 1.1e-05 39_[+2]_73 chr2R:17452606-17452726 1.1e-05 50_[+2]_62 chr3L:8985574-8985694 1.1e-05 64_[+2]_48 chr3L:3419977-3420097 1.1e-05 25_[+2]_87 chr2L:9908713-9908833 1.9e-05 54_[+2]_58 chr3L:3225358-3225478 1.9e-05 28_[+2]_84 chr2R:12468124-12468244 1.9e-05 27_[+2]_85 chr3R:24650017-24650137 1.9e-05 24_[+2]_88 chrX:16607967-16608087 1.9e-05 73_[+2]_39 chr2L:10003117-10003237 1.9e-05 54_[+2]_58 chr3R:12997556-12997676 1.9e-05 23_[+2]_89 chr2R:24535380-24535500 1.9e-05 19_[+2]_93 chrX:5746309-5746429 1.9e-05 31_[+2]_81 chr3R:9423357-9423477 1.9e-05 68_[+2]_44 chr3L:3159529-3159649 1.9e-05 33_[+2]_79 chr3R:18245346-18245466 1.9e-05 70_[+2]_42 chrX:19498902-19499022 1.9e-05 81_[+2]_31 chr2L:8302908-8303028 1.9e-05 59_[+2]_53 chr2R:6810482-6810602 1.9e-05 20_[+2]_92 chr3R:14901556-14901676 2.1e-05 63_[+2]_49 chr3L:871831-871951 2.4e-05 19_[+2]_93 chr2R:13507462-13507582 2.4e-05 53_[+2]_59 chr3R:7085570-7085690 2.4e-05 56_[+2]_56 chr3R:9628769-9628889 2.8e-05 59_[+2]_53 chr2R:7785906-7786026 2.8e-05 50_[+2]_62 chr2R:7930991-7931111 2.8e-05 85_[+2]_27 chr3R:8313093-8313213 3.6e-05 35_[+2]_77 chrX:9466293-9466413 3.6e-05 43_[+2]_69 chrX:7290718-7290838 3.6e-05 91_[+2]_21 chr2L:15062215-15062335 4.8e-05 15_[+2]_97 chr2R:8435049-8435169 4.8e-05 48_[+2]_64 chr2L:8542361-8542481 5.2e-05 49_[+2]_63 chr2L:16356914-16357034 5.2e-05 55_[+2]_57 chrX:1908800-1908920 6.1e-05 18_[+2]_94 chr2R:8914501-8914621 0.0001 55_[+2]_57 chrX:9467258-9467378 0.0001 103_[+2]_9 chr3L:3143441-3143561 0.0001 36_[+2]_76 chr3R:27273223-27273343 0.0001 68_[+2]_44 chr3R:31580015-31580135 0.0001 82_[+2]_30 chr2R:13183878-13183998 0.00012 40_[+2]_72 chrX:11611117-11611237 0.00012 51_[+2]_61 chr3L:995810-995930 0.00012 55_[+2]_57 chr2R:9964990-9965110 0.00013 73_[+2]_39 chr3L:18032963-18033083 0.00014 8_[+2]_104 chrX:12471455-12471575 0.00015 94_[+2]_18 chr2L:21307918-21308038 0.00022 79_[+2]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTGCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGTTGCC width=8 seqs=79 chr2L:5007485-5007605 ( 110) GGGTTGCC 1 chr3L:7529371-7529491 ( 65) GGGTTGCC 1 chr3L:4169981-4170101 ( 63) GGGTTGCC 1 chr3L:1516763-1516883 ( 68) GGGTTGCC 1 chr2R:6520255-6520375 ( 52) GGGTTGCC 1 chr3L:5662723-5662843 ( 11) GGGTTGCC 1 chr3L:19899674-19899794 ( 51) GGGTTGCC 1 chr3L:19100316-19100436 ( 62) GGGTTGCC 1 chr3L:22871077-22871197 ( 32) GGGTTGCC 1 chr3R:23902716-23902836 ( 56) GGGTTGCC 1 chr3L:5927673-5927793 ( 74) GGGTTGCC 1 chrX:2061938-2062058 ( 67) GGGTTGCC 1 chr3R:7944958-7945078 ( 37) GGGTTGCC 1 chr4:1029318-1029438 ( 37) GGGTTGCC 1 chr3R:25245123-25245243 ( 41) GGGTTGCC 1 chr2R:13206673-13206793 ( 33) GGGTTGCC 1 chrX:17885614-17885734 ( 87) GGGTTGCC 1 chr3R:14630349-14630469 ( 28) GGGTTGCC 1 chr2R:20281143-20281263 ( 22) GGGTTGCC 1 chrX:11125120-11125240 ( 88) GGGTTGCC 1 chr2L:20830103-20830223 ( 34) GGGTTGCC 1 chr2R:6036551-6036671 ( 110) GAGTTGCC 1 chrX:1899629-1899749 ( 31) GAGTTGCC 1 chr3R:12982317-12982437 ( 30) GAGTTGCC 1 chr2L:9912805-9912925 ( 74) GAGTTGCC 1 chr3R:20789149-20789269 ( 24) GAGTTGCC 1 chr3L:16129020-16129140 ( 33) GAGTTGCC 1 chr2L:3711722-3711842 ( 14) GAGTTGCC 1 chr3R:16225870-16225990 ( 56) GAGTTGCC 1 chr2R:21312246-21312366 ( 65) GAGTTGCC 1 chr2L:7405055-7405175 ( 64) GAGTTGCC 1 chr2L:21071597-21071717 ( 57) GAGTTGCC 1 chrX:6858624-6858744 ( 49) GAGTTGCC 1 chrX:254814-254934 ( 40) GAGTTGCC 1 chr2R:17452606-17452726 ( 51) GAGTTGCC 1 chr3L:8985574-8985694 ( 65) GAGTTGCC 1 chr3L:3419977-3420097 ( 26) GAGTTGCC 1 chr2L:9908713-9908833 ( 55) GGGTTGTC 1 chr3L:3225358-3225478 ( 29) GGGTTGTC 1 chr2R:12468124-12468244 ( 28) GGGTTGTC 1 chr3R:24650017-24650137 ( 25) GGGTTGTC 1 chrX:16607967-16608087 ( 74) GGGTTGTC 1 chr2L:10003117-10003237 ( 55) GGGTTGTC 1 chr3R:12997556-12997676 ( 24) GGGTTGTC 1 chr2R:24535380-24535500 ( 20) GGGTTGTC 1 chrX:5746309-5746429 ( 32) GGGTTGTC 1 chr3R:9423357-9423477 ( 69) GGGTTGTC 1 chr3L:3159529-3159649 ( 34) GGGTTGTC 1 chr3R:18245346-18245466 ( 71) GGGTTGTC 1 chrX:19498902-19499022 ( 82) GGGTTGTC 1 chr2L:8302908-8303028 ( 60) GGGTTGTC 1 chr2R:6810482-6810602 ( 21) GGGTTGTC 1 chr3R:14901556-14901676 ( 64) GGGCTGCC 1 chr3L:871831-871951 ( 20) GGGTGGCC 1 chr2R:13507462-13507582 ( 54) GGGTGGCC 1 chr3R:7085570-7085690 ( 57) GGGTGGCC 1 chr3R:9628769-9628889 ( 60) GCGTTGCC 1 chr2R:7785906-7786026 ( 51) GCGTTGCC 1 chr2R:7930991-7931111 ( 86) GCGTTGCC 1 chr3R:8313093-8313213 ( 36) GTGTTGCC 1 chrX:9466293-9466413 ( 44) GTGTTGCC 1 chrX:7290718-7290838 ( 92) GTGTTGCC 1 chr2L:15062215-15062335 ( 16) GAGTTGTC 1 chr2R:8435049-8435169 ( 49) GAGTTGTC 1 chr2L:8542361-8542481 ( 50) GAGCTGCC 1 chr2L:16356914-16357034 ( 56) GAGCTGCC 1 chrX:1908800-1908920 ( 19) GGGCTGTC 1 chr2R:8914501-8914621 ( 56) GGGTTACC 1 chrX:9467258-9467378 ( 104) TGGTTGCC 1 chr3L:3143441-3143561 ( 37) GGGTTACC 1 chr3R:27273223-27273343 ( 69) TGGTTGCC 1 chr3R:31580015-31580135 ( 83) GTGTTGTC 1 chr2R:13183878-13183998 ( 41) GTGCTGCC 1 chrX:11611117-11611237 ( 52) GGGTTGCG 1 chr3L:995810-995930 ( 56) GGGTTCCC 1 chr2R:9964990-9965110 ( 74) GTGTGGCC 1 chr3L:18032963-18033083 ( 9) GGGTTGCA 1 chrX:12471455-12471575 ( 95) GAGCGGCC 1 chr2L:21307918-21308038 ( 80) GCGCTGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTGCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3123 E= 1.1e-080 -1295 -1295 238 -364 -21 -189 170 -206 -1295 -1295 242 -1295 -1295 -109 -1295 153 -1295 -1295 -156 156 -360 -389 236 -1295 -1295 199 -1295 -32 -460 237 -388 -1295 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTGCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 1.1e-080 0.000000 0.000000 0.974684 0.025316 0.265823 0.050633 0.607595 0.075949 0.000000 0.000000 1.000000 0.000000 0.000000 0.088608 0.000000 0.911392 0.000000 0.000000 0.063291 0.936709 0.025316 0.012658 0.962025 0.000000 0.000000 0.746835 0.000000 0.253165 0.012658 0.974684 0.012658 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTGCC MEME-2 regular expression -------------------------------------------------------------------------------- G[GA]GTTG[CT]C -------------------------------------------------------------------------------- Time 13.33 secs. ******************************************************************************** ******************************************************************************** MOTIF AWCAGCTG MEME-3 width = 8 sites = 21 llr = 211 E-value = 4.1e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A a5:a:::: pos.-specific C ::a::a:: probability G :2::a:2a matrix T :3::::8: bits 2.4 * ** * 2.2 * ** * 1.9 * ** * 1.7 * **** * Relative 1.5 * **** * Entropy 1.2 * **** * (14.5 bits) 1.0 * ****** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AACAGCTG consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6036551-6036671 44 1.14e-05 AAGATTCACC AACAGCTG CAGATAAACG chr2L:452992-453112 68 1.14e-05 TGTAATGCGA AACAGCTG TTCTGTTAGA chr3R:4654674-4654794 103 1.14e-05 AGGCCTCCTA AACAGCTG ATCTGATTCG chr2L:4973895-4974015 94 1.14e-05 TTCACATACG AACAGCTG TTTTTTCCAA chr3R:24659539-24659659 93 1.14e-05 TGTAATTGTA AACAGCTG TGCGAGAAGC chr2R:18426320-18426440 86 1.14e-05 ATCAACGTAA AACAGCTG TTTGCTTTGA chr3L:4429042-4429162 111 1.14e-05 AAATATTATC AACAGCTG AT chrX:254814-254934 77 1.14e-05 TATCGAAACG AACAGCTG ATTTTTGTTT chr2R:12321202-12321322 21 1.14e-05 TACCTGCCGG AACAGCTG TTAAAACAGA chr3L:8985574-8985694 49 1.14e-05 GACTATAGCC AACAGCTG TTATTTAGGA chr3R:12982317-12982437 80 2.52e-05 TGCTGATAAA AGCAGCTG ATTTTTATAA chr3L:16129020-16129140 4 2.52e-05 ATT AACAGCGG CTTAACAGAC chr2L:8031674-8031794 22 3.69e-05 CTTGCGTTAC ATCAGCTG TTTTACGGCT chr3R:25594325-25594445 51 3.69e-05 AACTGCAAGA ATCAGCTG TCACTTGCCA chr2R:14860755-14860875 5 3.69e-05 TGGT ATCAGCTG TTTGGCGAGT chr3L:1798716-1798836 93 3.69e-05 AACCCTGTCC ATCAGCTG TTTGTGAAAA chr2R:9446834-9446954 29 3.69e-05 TATGGACGCA ATCAGCTG TTATCTGGAT chrX:19637128-19637248 8 4.10e-05 GCAGCGA AGCAGCGG GATAGGCAAA chr3L:5662723-5662843 39 4.10e-05 AATAAGGATG AGCAGCGG AAGCTGCGCA chrX:5746309-5746429 22 4.10e-05 TCACTTATGC AGCAGCGG CAGGGTTGTC chr2L:874252-874372 100 4.80e-05 GTAGTGCGTC ATCAGCGG ATGCGTCACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6036551-6036671 1.1e-05 43_[+3]_69 chr2L:452992-453112 1.1e-05 67_[+3]_45 chr3R:4654674-4654794 1.1e-05 102_[+3]_10 chr2L:4973895-4974015 1.1e-05 93_[+3]_19 chr3R:24659539-24659659 1.1e-05 92_[+3]_20 chr2R:18426320-18426440 1.1e-05 85_[+3]_27 chr3L:4429042-4429162 1.1e-05 110_[+3]_2 chrX:254814-254934 1.1e-05 76_[+3]_36 chr2R:12321202-12321322 1.1e-05 20_[+3]_92 chr3L:8985574-8985694 1.1e-05 48_[+3]_64 chr3R:12982317-12982437 2.5e-05 79_[+3]_33 chr3L:16129020-16129140 2.5e-05 3_[+3]_109 chr2L:8031674-8031794 3.7e-05 21_[+3]_91 chr3R:25594325-25594445 3.7e-05 50_[+3]_62 chr2R:14860755-14860875 3.7e-05 4_[+3]_108 chr3L:1798716-1798836 3.7e-05 92_[+3]_20 chr2R:9446834-9446954 3.7e-05 28_[+3]_84 chrX:19637128-19637248 4.1e-05 7_[+3]_105 chr3L:5662723-5662843 4.1e-05 38_[+3]_74 chrX:5746309-5746429 4.1e-05 21_[+3]_91 chr2L:874252-874372 4.8e-05 99_[+3]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AWCAGCTG width=8 seqs=21 chr2R:6036551-6036671 ( 44) AACAGCTG 1 chr2L:452992-453112 ( 68) AACAGCTG 1 chr3R:4654674-4654794 ( 103) AACAGCTG 1 chr2L:4973895-4974015 ( 94) AACAGCTG 1 chr3R:24659539-24659659 ( 93) AACAGCTG 1 chr2R:18426320-18426440 ( 86) AACAGCTG 1 chr3L:4429042-4429162 ( 111) AACAGCTG 1 chrX:254814-254934 ( 77) AACAGCTG 1 chr2R:12321202-12321322 ( 21) AACAGCTG 1 chr3L:8985574-8985694 ( 49) AACAGCTG 1 chr3R:12982317-12982437 ( 80) AGCAGCTG 1 chr3L:16129020-16129140 ( 4) AACAGCGG 1 chr2L:8031674-8031794 ( 22) ATCAGCTG 1 chr3R:25594325-25594445 ( 51) ATCAGCTG 1 chr2R:14860755-14860875 ( 5) ATCAGCTG 1 chr3L:1798716-1798836 ( 93) ATCAGCTG 1 chr2R:9446834-9446954 ( 29) ATCAGCTG 1 chrX:19637128-19637248 ( 8) AGCAGCGG 1 chr3L:5662723-5662843 ( 39) AGCAGCGG 1 chrX:5746309-5746429 ( 22) AGCAGCGG 1 chr2L:874252-874372 ( 100) ATCAGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3794 E= 4.1e-004 170 -1104 -1104 -1104 76 -1104 3 -15 -1104 241 -1104 -1104 170 -1104 -1104 -1104 -1104 -1104 242 -1104 -1104 241 -1104 -1104 -1104 -1104 35 127 -1104 -1104 242 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 4.1e-004 1.000000 0.000000 0.000000 0.000000 0.523810 0.000000 0.190476 0.285714 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.238095 0.761905 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AWCAGCTG MEME-3 regular expression -------------------------------------------------------------------------------- A[AT]CAGC[TG]G -------------------------------------------------------------------------------- Time 19.29 secs. ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-4 width = 8 sites = 26 llr = 240 E-value = 1.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:::a1a pos.-specific C 2::a:::: probability G 1:::a::: matrix T 7:a:::9: bits 2.4 ** 2.2 ** 1.9 ** 1.7 ***** Relative 1.5 ***** * Entropy 1.2 ******* (13.3 bits) 1.0 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:8313093-8313213 69 3.27e-05 AGTGAAAACA TATCGATA TCAAATTAAA chr2L:16356914-16357034 11 3.27e-05 TTATTGCCAC TATCGATA TATTTCGGTA chr3R:21140614-21140734 61 3.27e-05 AAATTAGTTG TATCGATA CCGCGACGAA chr3L:690398-690518 70 3.27e-05 AATTATCGGT TATCGATA GCGTTCAAAT chr2R:13507462-13507582 43 3.27e-05 TAATTTAACG TATCGATA AGTGGGTGGC chrX:476575-476695 41 3.27e-05 AGTCAATAAA TATCGATA GTTGTTGGTT chr3R:25476920-25477040 6 3.27e-05 AAGGC TATCGATA TATAGCGCTT chr3R:24659539-24659659 28 3.27e-05 TCGTTGGCGT TATCGATA AGTTGATTTT chr3L:16139247-16139367 86 3.27e-05 TGCAATTGGT TATCGATA ACTTCAGTTT chr3R:25245123-25245243 13 3.27e-05 GTTGTTAACG TATCGATA TCATGTCGAG chr2R:13206673-13206793 15 3.27e-05 TGCTGCTGGA TATCGATA TCCACTATCA chr2L:4382674-4382794 98 3.27e-05 ATCGAGCGCT TATCGATA TCAAACGCTG chr3R:17794951-17795071 95 3.27e-05 ACTAAATAAA TATCGATA ATTCCCTTTT chr2L:20065675-20065795 26 3.27e-05 CCAATCGAAA TATCGATA TTATTAGACA chr2R:6810482-6810602 85 3.27e-05 TCCGCAATGC TATCGATA TTTTATTTAA chr3L:871831-871951 36 5.21e-05 CCACCCTGGC CATCGATA GCACGCGCCG chr3L:17841131-17841251 35 5.21e-05 TGTAAATTAC CATCGATA TTTTATACTC chrX:20433739-20433859 86 5.21e-05 AATTCCTGCC CATCGATA GGCAGACAGT chrX:1908800-1908920 40 5.21e-05 CCTCGCATGG CATCGATA GAAGAGCGTC chrX:11125120-11125240 59 5.21e-05 TAAATGGCCC CATCGATA GATCACAATC chr3L:19899674-19899794 95 7.14e-05 TAGAACAATC GATCGATA AAAAACGACC chr3R:9756303-9756423 88 7.14e-05 GATTAAGCCC GATCGATA TATAAAAATT chr3L:3225559-3225679 101 1.03e-04 ACTTGCGATC TATCGAAA CGGCGAAAGT chrX:10234997-10235117 81 1.03e-04 TGCAATTAAT TATCGAAA ATCTAAAGTA chrX:254814-254934 67 1.03e-04 TACACTAAGT TATCGAAA CGAACAGCTG chr3L:1798716-1798836 56 1.23e-04 GTCGATTGCT TATCGATG CACAACGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:8313093-8313213 3.3e-05 68_[+4]_44 chr2L:16356914-16357034 3.3e-05 10_[+4]_102 chr3R:21140614-21140734 3.3e-05 60_[+4]_52 chr3L:690398-690518 3.3e-05 69_[+4]_43 chr2R:13507462-13507582 3.3e-05 42_[+4]_70 chrX:476575-476695 3.3e-05 40_[+4]_72 chr3R:25476920-25477040 3.3e-05 5_[+4]_107 chr3R:24659539-24659659 3.3e-05 27_[+4]_85 chr3L:16139247-16139367 3.3e-05 85_[+4]_27 chr3R:25245123-25245243 3.3e-05 12_[+4]_100 chr2R:13206673-13206793 3.3e-05 14_[+4]_98 chr2L:4382674-4382794 3.3e-05 97_[+4]_15 chr3R:17794951-17795071 3.3e-05 94_[+4]_18 chr2L:20065675-20065795 3.3e-05 25_[+4]_87 chr2R:6810482-6810602 3.3e-05 84_[+4]_28 chr3L:871831-871951 5.2e-05 35_[+4]_77 chr3L:17841131-17841251 5.2e-05 34_[+4]_78 chrX:20433739-20433859 5.2e-05 85_[+4]_27 chrX:1908800-1908920 5.2e-05 39_[+4]_73 chrX:11125120-11125240 5.2e-05 58_[+4]_54 chr3L:19899674-19899794 7.1e-05 94_[+4]_18 chr3R:9756303-9756423 7.1e-05 87_[+4]_25 chr3L:3225559-3225679 0.0001 100_[+4]_12 chrX:10234997-10235117 0.0001 80_[+4]_32 chrX:254814-254934 0.0001 66_[+4]_46 chr3L:1798716-1798836 0.00012 55_[+4]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=26 chr3R:8313093-8313213 ( 69) TATCGATA 1 chr2L:16356914-16357034 ( 11) TATCGATA 1 chr3R:21140614-21140734 ( 61) TATCGATA 1 chr3L:690398-690518 ( 70) TATCGATA 1 chr2R:13507462-13507582 ( 43) TATCGATA 1 chrX:476575-476695 ( 41) TATCGATA 1 chr3R:25476920-25477040 ( 6) TATCGATA 1 chr3R:24659539-24659659 ( 28) TATCGATA 1 chr3L:16139247-16139367 ( 86) TATCGATA 1 chr3R:25245123-25245243 ( 13) TATCGATA 1 chr2R:13206673-13206793 ( 15) TATCGATA 1 chr2L:4382674-4382794 ( 98) TATCGATA 1 chr3R:17794951-17795071 ( 95) TATCGATA 1 chr2L:20065675-20065795 ( 26) TATCGATA 1 chr2R:6810482-6810602 ( 85) TATCGATA 1 chr3L:871831-871951 ( 36) CATCGATA 1 chr3L:17841131-17841251 ( 35) CATCGATA 1 chrX:20433739-20433859 ( 86) CATCGATA 1 chrX:1908800-1908920 ( 40) CATCGATA 1 chrX:11125120-11125240 ( 59) CATCGATA 1 chr3L:19899674-19899794 ( 95) GATCGATA 1 chr3R:9756303-9756423 ( 88) GATCGATA 1 chr3L:3225559-3225679 ( 101) TATCGAAA 1 chrX:10234997-10235117 ( 81) TATCGAAA 1 chrX:254814-254934 ( 67) TATCGAAA 1 chr3L:1798716-1798836 ( 56) TATCGATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6151 E= 1.5e+000 -1134 3 -128 121 170 -1134 -1134 -1134 -1134 -1134 -1134 166 -1134 241 -1134 -1134 -1134 -1134 242 -1134 170 -1134 -1134 -1134 -142 -1134 -1134 148 164 -1134 -228 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 1.5e+000 0.000000 0.192308 0.076923 0.730769 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.115385 0.000000 0.000000 0.884615 0.961538 0.000000 0.038462 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-4 regular expression -------------------------------------------------------------------------------- TATCGATA -------------------------------------------------------------------------------- Time 25.20 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGMGTGC MEME-5 width = 8 sites = 13 llr = 134 E-value = 1.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGMGTGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::4:2:: pos.-specific C 1a:622:a probability G 9:a:8:a: matrix T :::::5:: bits 2.4 ** ** 2.2 ** ** 1.9 *** ** 1.7 *** * ** Relative 1.5 *** * ** Entropy 1.2 ***** ** (14.9 bits) 1.0 ***** ** 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCGTGC consensus ACA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMGTGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3419977-3420097 58 2.58e-06 TGATTGAGCG GCGCGTGC GGCTCCAAGC chr3L:3143441-3143561 48 4.10e-06 GGTTACCGCA GCGCGCGC ATTTCGTGTG chr2R:13183878-13183998 57 4.10e-06 CCAAGAGTCA GCGCGCGC ATGGGCAGCA chr2L:20065675-20065795 62 6.61e-06 AGAGATAATC GCGCGAGC TGGATACTCT chr2R:14860755-14860875 17 1.08e-05 CAGCTGTTTG GCGAGTGC ACATCAACAG chrX:9639267-9639387 39 1.08e-05 GGGTGGTTTT GCGAGTGC AAGGTTGCAT chr3R:9343337-9343457 45 1.08e-05 GTTCTTATCG GCGAGTGC ATAGGGGGTT chr2R:9964990-9965110 88 1.08e-05 GGCCAGAGTT GCGAGTGC GCAAATTCTC chr2R:14258920-14259040 30 1.59e-05 TTTGAATTTG GCGCCTGC AAACTATCGG chr3L:17051202-17051322 47 1.59e-05 CGCTGTTTGC GCGCCTGC TGCGCACCTG chr2L:9908713-9908833 37 2.16e-05 GTGGGAAAAT GCGAGAGC GATCCGTTTA chrX:16607967-16608087 14 2.41e-05 GACCTCCACA GCGCCAGC CAATATATTT chrX:2136845-2136965 45 3.50e-05 TCAAACTGAA CCGCGCGC CACAGCGACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMGTGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3419977-3420097 2.6e-06 57_[+5]_55 chr3L:3143441-3143561 4.1e-06 47_[+5]_65 chr2R:13183878-13183998 4.1e-06 56_[+5]_56 chr2L:20065675-20065795 6.6e-06 61_[+5]_51 chr2R:14860755-14860875 1.1e-05 16_[+5]_96 chrX:9639267-9639387 1.1e-05 38_[+5]_74 chr3R:9343337-9343457 1.1e-05 44_[+5]_68 chr2R:9964990-9965110 1.1e-05 87_[+5]_25 chr2R:14258920-14259040 1.6e-05 29_[+5]_83 chr3L:17051202-17051322 1.6e-05 46_[+5]_66 chr2L:9908713-9908833 2.2e-05 36_[+5]_76 chrX:16607967-16608087 2.4e-05 13_[+5]_99 chrX:2136845-2136965 3.5e-05 44_[+5]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMGTGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGMGTGC width=8 seqs=13 chr3L:3419977-3420097 ( 58) GCGCGTGC 1 chr3L:3143441-3143561 ( 48) GCGCGCGC 1 chr2R:13183878-13183998 ( 57) GCGCGCGC 1 chr2L:20065675-20065795 ( 62) GCGCGAGC 1 chr2R:14860755-14860875 ( 17) GCGAGTGC 1 chrX:9639267-9639387 ( 39) GCGAGTGC 1 chr3R:9343337-9343457 ( 45) GCGAGTGC 1 chr2R:9964990-9965110 ( 88) GCGAGTGC 1 chr2R:14258920-14259040 ( 30) GCGCCTGC 1 chr3L:17051202-17051322 ( 47) GCGCCTGC 1 chr2L:9908713-9908833 ( 37) GCGAGAGC 1 chrX:16607967-16608087 ( 14) GCGCCAGC 1 chrX:2136845-2136965 ( 45) CCGCGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMGTGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2496 E= 1.8e+002 -1035 -129 230 -1035 -1035 241 -1035 -1035 -1035 -1035 242 -1035 32 171 -1035 -1035 -1035 29 204 -1035 -42 29 -1035 77 -1035 -1035 242 -1035 -1035 241 -1035 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMGTGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.8e+002 0.000000 0.076923 0.923077 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.384615 0.615385 0.000000 0.000000 0.000000 0.230769 0.769231 0.000000 0.230769 0.230769 0.000000 0.538462 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGMGTGC MEME-5 regular expression -------------------------------------------------------------------------------- GCG[CA][GC][TAC]GC -------------------------------------------------------------------------------- Time 31.42 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10805715-10805835 9.35e-02 50_[+1(3.88e-05)]_62 chr3L:995810-995930 2.82e-01 120 chr3L:18032963-18033083 1.49e-03 94_[+1(4.14e-06)]_18 chr3L:18034648-18034768 3.03e-02 56_[+1(1.11e-05)]_1_[+1(8.19e-05)]_\ 47 chr2L:8041004-8041124 8.14e-03 94_[+1(4.14e-06)]_18 chrX:11611117-11611237 2.92e-03 120 chr3L:3419977-3420097 2.74e-06 25_[+2(1.15e-05)]_24_[+5(2.58e-06)]_\ 12_[+1(3.88e-05)]_35 chr3L:8985574-8985694 4.13e-05 48_[+3(1.14e-05)]_8_[+2(1.15e-05)]_\ 48 chr4:659181-659301 9.00e-01 120 chr2R:8435049-8435169 3.12e-02 48_[+2(4.77e-05)]_64 chr2L:15062215-15062335 8.04e-04 15_[+2(4.77e-05)]_64_[+1(4.14e-06)]_\ 25 chr2R:12321202-12321322 3.34e-04 20_[+3(1.14e-05)]_26_[+1(3.88e-05)]_\ 58 chr3R:31580015-31580135 9.97e-05 29_[+1(4.14e-06)]_17_[+1(1.11e-05)]_\ 58 chr3L:15976853-15976973 1.01e-02 120 chr2R:17452606-17452726 9.41e-03 50_[+2(1.15e-05)]_62 chr2L:20830103-20830223 1.12e-02 33_[+2(4.34e-06)]_79 chr2R:6810482-6810602 1.17e-03 20_[+2(1.88e-05)]_56_[+4(3.27e-05)]_\ 28 chr2L:14614568-14614688 9.99e-01 120 chrX:254814-254934 1.09e-05 39_[+2(1.15e-05)]_29_[+3(1.14e-05)]_\ 36 chrX:5064010-5064130 9.81e-01 120 chr2L:11990804-11990924 8.40e-02 68_[+1(2.73e-05)]_44 chr2R:13183878-13183998 4.78e-05 56_[+5(4.10e-06)]_3_[+1(8.19e-05)]_\ 45 chrX:11125120-11125240 4.52e-05 58_[+4(5.21e-05)]_21_[+2(4.34e-06)]_\ 25 chr2R:17019872-17019992 8.29e-02 96_[+1(1.80e-05)]_16 chr2R:20281143-20281263 5.46e-05 21_[+2(4.34e-06)]_2_[+5(4.58e-05)]_\ 81 chr3R:24931945-24932065 5.03e-03 52_[+1(4.14e-06)]_60 chr2L:4965560-4965680 5.76e-04 104_[+1(1.80e-05)]_8 chr3L:4429042-4429162 2.82e-05 70_[+1(1.11e-05)]_32_[+3(1.14e-05)]_\ 2 chrX:13759124-13759244 6.85e-01 120 chr2R:21000653-21000773 6.40e-03 78_[+1(4.14e-06)]_34 chr3L:16121901-16122021 6.02e-02 120 chr3R:14630349-14630469 1.44e-02 27_[+2(4.34e-06)]_85 chr2R:13198733-13198853 9.97e-01 120 chrX:17885614-17885734 5.00e-03 86_[+2(4.34e-06)]_26 chr2L:8302908-8303028 4.14e-03 59_[+2(1.88e-05)]_53 chrX:6858624-6858744 2.83e-04 48_[+2(1.15e-05)]_12_[+1(2.73e-05)]_\ 44 chrX:19498902-19499022 3.20e-02 72_[+2(1.88e-05)]_1_[+2(1.88e-05)]_\ 31 chr3R:27273223-27273343 2.70e-04 60_[+1(1.11e-05)]_52 chr3R:7085570-7085690 4.23e-03 56_[+2(2.40e-05)]_56 chr2R:17870978-17871098 1.02e-03 45_[+3(7.29e-05)]_25_[+1(2.73e-05)]_\ 34 chr2L:20065675-20065795 1.53e-03 25_[+4(3.27e-05)]_28_[+5(6.61e-06)]_\ 51 chr3R:17794951-17795071 3.16e-01 94_[+4(3.27e-05)]_18 chr2L:10211132-10211252 2.94e-02 38_[+1(4.14e-06)]_74 chr3R:26248247-26248367 8.57e-01 120 chr2R:16008228-16008348 9.11e-02 59_[+1(2.73e-05)]_53 chrX:10906485-10906605 9.35e-04 3_[+3(5.50e-05)]_4_[+3(7.29e-05)]_\ 25_[+3(7.29e-05)]_16_[+3(7.29e-05)]_19_[+1(7.08e-05)]_4_[+1(3.88e-05)]_1 chr3R:18245346-18245466 1.61e-02 70_[+2(1.88e-05)]_42 chr2R:20281346-20281466 6.56e-02 61_[+1(1.80e-05)]_51 chr2L:4382674-4382794 3.75e-06 61_[+1(4.14e-06)]_28_[+4(3.27e-05)]_\ 15 chr2R:7930991-7931111 3.44e-02 57_[+2(6.06e-05)]_20_[+2(2.83e-05)]_\ 27 chr2R:13206673-13206793 2.00e-06 14_[+4(3.27e-05)]_10_[+2(4.34e-06)]_\ 62_[+1(2.73e-05)]_10 chr3R:18314992-18315112 8.65e-01 120 chrX:2636275-2636395 2.50e-02 28_[+1(1.11e-05)]_84 chr3L:4116642-4116762 3.24e-02 120 chr3L:3159529-3159649 1.48e-03 33_[+2(1.88e-05)]_22_[+1(7.08e-05)]_\ 49 chr3R:25245123-25245243 3.09e-04 12_[+4(3.27e-05)]_20_[+2(4.34e-06)]_\ 72 chr2R:7785906-7786026 1.16e-03 35_[+1(1.80e-05)]_7_[+2(2.83e-05)]_\ 62 chr2R:9964990-9965110 7.72e-04 87_[+5(1.08e-05)]_25 chr2L:874252-874372 8.07e-05 60_[+1(4.14e-06)]_31_[+3(4.80e-05)]_\ 13 chr3L:2478756-2478876 8.87e-01 120 chr2L:21071597-21071717 9.70e-02 56_[+2(1.15e-05)]_56 chr4:1029318-1029438 2.52e-04 36_[+2(4.34e-06)]_47_[+1(1.11e-05)]_\ 21 chrX:18884150-18884270 7.57e-03 30_[+1(3.88e-05)]_82 chr3L:16139247-16139367 8.56e-03 85_[+4(3.27e-05)]_27 chrX:5428355-5428475 4.55e-02 63_[+1(4.14e-06)]_49 chr3R:20949838-20949958 3.18e-01 120 chr2L:20891293-20891413 2.90e-02 35_[+1(1.11e-05)]_25_[+1(1.11e-05)]_\ 44 chrX:16881166-16881286 9.94e-01 120 chr3L:19792856-19792976 2.60e-03 66_[+1(4.14e-06)]_46 chr3R:13780828-13780948 3.98e-01 120 chr3R:19212665-19212785 5.96e-01 120 chr3R:31715155-31715275 3.52e-02 63_[+1(1.80e-05)]_9_[+1(1.11e-05)]_\ 32 chr2R:18426320-18426440 4.33e-03 52_[+1(3.88e-05)]_25_[+3(1.14e-05)]_\ 16_[+1(4.29e-05)]_3 chr3R:27700311-27700431 7.53e-02 120 chr3R:7944958-7945078 2.21e-03 36_[+2(4.34e-06)]_76 chr3L:17051202-17051322 9.85e-05 46_[+5(1.59e-05)]_9_[+1(4.14e-06)]_\ 49 chrX:13934532-13934652 6.94e-01 120 chr3R:24659539-24659659 9.83e-07 27_[+4(3.27e-05)]_22_[+1(1.11e-05)]_\ 27_[+3(1.14e-05)]_20 chr3R:9423357-9423477 1.09e-01 68_[+2(1.88e-05)]_44 chrX:3444880-3445000 7.31e-01 120 chr3R:9679883-9680003 3.15e-02 51_[+1(2.73e-05)]_9_[+1(9.30e-05)]_\ 44 chr3R:22816555-22816675 9.86e-01 120 chrX:12632586-12632706 1.03e-03 27_[+2(4.34e-06)]_85 chrX:5746309-5746429 2.11e-03 21_[+3(4.10e-05)]_2_[+2(1.88e-05)]_\ 81 chr2L:7405055-7405175 7.15e-02 63_[+2(1.15e-05)]_49 chrX:2061938-2062058 2.88e-03 66_[+2(4.34e-06)]_46 chr4:416360-416480 2.93e-01 120 chr3L:5927673-5927793 6.79e-03 73_[+2(4.34e-06)]_39 chr3L:3143441-3143561 9.53e-05 11_[+5(9.37e-05)]_28_[+5(4.10e-06)]_\ 65 chr3L:11272767-11272887 7.38e-01 120 chr3R:9343337-9343457 5.50e-05 44_[+5(1.08e-05)]_21_[+1(4.14e-06)]_\ 39 chr2L:18119820-18119940 1.11e-01 104_[+1(1.80e-05)]_8 chr3R:25476920-25477040 1.88e-02 5_[+4(3.27e-05)]_27_[+4(3.27e-05)]_\ 72 chrX:22455082-22455202 8.15e-03 54_[+5(3.34e-05)]_58 chrX:2108757-2108877 1.19e-02 120 chr2L:2576912-2577032 1.72e-01 120 chrX:10735412-10735532 8.27e-01 120 chrX:8895094-8895214 7.39e-01 120 chr2R:21312246-21312366 1.48e-02 64_[+2(1.15e-05)]_48 chr3L:11119546-11119666 2.87e-02 61_[+1(2.73e-05)]_51 chr3R:14901556-14901676 2.70e-03 63_[+2(2.14e-05)]_49 chr3R:23902716-23902836 2.02e-02 55_[+2(4.34e-06)]_57 chr2L:4930698-4930818 9.72e-01 120 chr2R:24535380-24535500 1.04e-04 19_[+2(1.88e-05)]_93 chr3L:5247182-5247302 6.72e-01 120 chr2R:9446834-9446954 3.16e-03 28_[+3(3.69e-05)]_27_[+1(1.11e-05)]_\ 49 chr3L:14362199-14362319 2.76e-02 70_[+1(1.11e-05)]_42 chr3R:12997556-12997676 1.06e-02 23_[+2(1.88e-05)]_89 chr2L:11849723-11849843 6.95e-01 120 chr3L:875530-875650 1.89e-01 120 chr2L:4973895-4974015 8.64e-06 62_[+1(4.14e-06)]_23_[+3(1.14e-05)]_\ 19 chrX:11819370-11819490 6.99e-01 120 chr3L:1798716-1798836 4.03e-05 79_[+1(4.14e-06)]_5_[+3(3.69e-05)]_\ 20 chr3L:22871077-22871197 1.88e-03 31_[+2(4.34e-06)]_81 chrX:3667316-3667436 9.81e-01 120 chrX:11350903-11351023 1.17e-01 120 chrX:12765880-12766000 9.31e-01 120 chr3L:15634836-15634956 8.87e-01 120 chr2L:10003117-10003237 6.69e-04 54_[+2(1.88e-05)]_11_[+1(5.12e-05)]_\ 39 chr2R:13375617-13375737 9.89e-01 120 chrX:13734986-13735106 4.50e-02 120 chr3R:16225870-16225990 4.83e-06 55_[+2(1.15e-05)]_31_[+1(4.14e-06)]_\ 18 chr2L:3711722-3711842 4.99e-03 13_[+2(1.15e-05)]_99 chrX:16829571-16829691 9.91e-01 120 chr3R:9756303-9756423 2.04e-01 87_[+4(7.14e-05)]_25 chr2L:20809353-20809473 9.81e-01 120 chr3L:3940695-3940815 9.83e-01 120 chrX:12471455-12471575 2.13e-03 68_[+1(2.73e-05)]_44 chr2L:2131577-2131697 9.44e-01 120 chrX:13935730-13935850 4.10e-01 120 chrX:13972562-13972682 9.99e-01 120 chr3L:21383602-21383722 9.82e-01 120 chr3R:9628769-9628889 2.76e-03 4_[+1(2.73e-05)]_47_[+2(2.83e-05)]_\ 53 chr3L:14003730-14003850 3.11e-03 42_[+2(1.15e-05)]_70 chrX:1908800-1908920 4.02e-05 18_[+2(6.06e-05)]_13_[+4(5.21e-05)]_\ 22_[+1(7.78e-05)]_43 chrX:18407506-18407626 4.93e-01 120 chrX:476575-476695 2.75e-04 14_[+1(4.14e-06)]_18_[+4(3.27e-05)]_\ 72 chrX:20433739-20433859 2.43e-03 59_[+1(1.80e-05)]_18_[+4(5.21e-05)]_\ 27 chr2L:5303025-5303145 7.15e-01 120 chr3L:19100316-19100436 1.52e-02 61_[+2(4.34e-06)]_51 chr3R:17714442-17714562 8.21e-01 120 chr3R:6429938-6430058 1.34e-01 86_[+1(1.11e-05)]_26 chr3R:18243833-18243953 1.30e-02 71_[+1(4.14e-06)]_41 chr3L:1478587-1478707 9.92e-02 120 chr3L:19899674-19899794 3.33e-04 50_[+2(4.34e-06)]_36_[+4(7.14e-05)]_\ 18 chr3L:5643876-5643996 3.17e-03 120 chr3R:14218016-14218136 9.78e-01 120 chr2R:17572746-17572866 5.03e-02 85_[+1(7.08e-05)]_27 chr2R:17676963-17677083 6.86e-03 25_[+5(3.91e-05)]_87 chrX:9639267-9639387 4.31e-02 38_[+5(1.08e-05)]_74 chrX:14501125-14501245 9.99e-01 120 chrX:2032986-2033106 5.30e-03 49_[+1(4.14e-06)]_63 chr3L:16129020-16129140 2.56e-03 3_[+3(2.52e-05)]_21_[+2(1.15e-05)]_\ 80 chrX:16607967-16608087 1.40e-04 13_[+5(2.41e-05)]_52_[+2(1.88e-05)]_\ 39 chr2R:13507462-13507582 4.77e-05 42_[+4(3.27e-05)]_3_[+2(2.40e-05)]_\ 22_[+1(1.11e-05)]_29 chrX:8176898-8177018 2.06e-01 120 chr2R:14860755-14860875 1.73e-04 4_[+3(3.69e-05)]_4_[+5(1.08e-05)]_\ 96 chr3R:20789149-20789269 7.95e-04 23_[+2(1.15e-05)]_89 chrX:15803900-15804020 4.40e-01 120 chr3L:690398-690518 9.72e-04 69_[+4(3.27e-05)]_14_[+1(1.11e-05)]_\ 21 chrX:7968639-7968759 9.91e-02 95_[+1(1.80e-05)]_17 chr3L:5662723-5662843 2.24e-04 10_[+2(4.34e-06)]_20_[+3(4.10e-05)]_\ 74 chr3L:3159732-3159852 2.40e-01 120 chr2R:9130039-9130159 7.73e-01 120 chr2R:14258920-14259040 2.36e-05 29_[+5(1.59e-05)]_48_[+1(4.14e-06)]_\ 27 chr2R:9184588-9184708 9.97e-01 120 chr2L:16537274-16537394 8.49e-01 120 chrX:10234997-10235117 1.08e-03 62_[+1(1.80e-05)]_50 chr3R:25594325-25594445 1.68e-04 50_[+3(3.69e-05)]_17_[+1(4.14e-06)]_\ 37 chr3L:12050047-12050167 6.04e-01 120 chr3R:11626677-11626797 9.69e-01 120 chrX:15306652-15306772 9.22e-03 68_[+1(4.14e-06)]_44 chrX:4614449-4614569 8.72e-01 120 chrX:2136845-2136965 2.40e-03 44_[+5(3.50e-05)]_6_[+1(3.88e-05)]_\ 54 chr3R:31250561-31250681 8.10e-01 120 chr2R:6520255-6520375 5.63e-03 51_[+2(4.34e-06)]_61 chr3R:21140614-21140734 1.77e-02 60_[+4(3.27e-05)]_52 chr3L:19906580-19906700 1.33e-02 31_[+1(1.80e-05)]_81 chr3L:1516763-1516883 1.45e-03 67_[+2(4.34e-06)]_45 chr3R:24650017-24650137 5.20e-02 24_[+2(1.88e-05)]_88 chr2R:12279232-12279352 7.77e-02 52_[+1(1.11e-05)]_60 chr3L:17841131-17841251 1.76e-03 34_[+4(5.21e-05)]_27_[+1(3.88e-05)]_\ 43 chr2L:16356914-16357034 1.75e-04 10_[+4(3.27e-05)]_37_[+2(5.20e-05)]_\ 24_[+1(7.08e-05)]_25 chrX:12031580-12031700 9.50e-01 120 chr2R:12468124-12468244 4.39e-02 27_[+2(1.88e-05)]_85 chr3R:26945384-26945504 1.05e-02 87_[+1(4.14e-06)]_25 chrX:13779841-13779961 5.03e-01 120 chrX:7290718-7290838 7.00e-02 91_[+2(3.57e-05)]_21 chr3R:13260235-13260355 3.56e-03 71_[+1(1.80e-05)]_41 chr3R:23240045-23240165 2.39e-03 54_[+1(4.14e-06)]_58 chrX:9467258-9467378 7.31e-04 95_[+1(4.14e-06)]_17 chr3L:871831-871951 4.17e-06 19_[+2(2.40e-05)]_8_[+4(5.21e-05)]_\ 37_[+1(1.80e-05)]_32 chr2L:16721482-16721602 9.71e-01 120 chr2L:9912805-9912925 1.25e-02 73_[+2(1.15e-05)]_39 chr2R:8914501-8914621 5.73e-03 37_[+1(4.29e-05)]_75 chr2L:21307918-21308038 3.38e-01 120 chr3R:17536934-17537054 6.84e-01 120 chr3R:10083206-10083326 4.84e-03 120 chr3L:5845640-5845760 7.59e-02 120 chr3R:12982317-12982437 3.96e-05 2_[+1(8.19e-05)]_19_[+2(1.15e-05)]_\ 42_[+3(2.52e-05)]_33 chr3L:7833479-7833599 9.37e-01 120 chrX:11088923-11089043 8.19e-01 120 chr3R:8712800-8712920 9.84e-01 120 chr2R:6173419-6173539 8.35e-01 120 chr3L:4169981-4170101 6.27e-03 62_[+2(4.34e-06)]_50 chrX:6255665-6255785 6.04e-01 120 chr3L:3225358-3225478 1.66e-03 28_[+2(1.88e-05)]_84 chr3L:12275796-12275916 9.99e-01 120 chr2L:8959174-8959294 9.49e-01 120 chrX:11348906-11349026 5.51e-01 120 chr2L:8031674-8031794 3.02e-04 21_[+3(3.69e-05)]_47_[+1(2.73e-05)]_\ 36 chr3R:31743380-31743500 1.92e-02 48_[+1(2.73e-05)]_64 chr3L:2481584-2481704 3.15e-01 120 chrX:7086694-7086814 4.49e-01 120 chr3R:8823124-8823244 9.10e-01 120 chr2L:9669506-9669626 9.85e-01 120 chr3R:4654674-4654794 9.25e-04 61_[+1(1.11e-05)]_33_[+3(1.14e-05)]_\ 10 chr2R:5760456-5760576 1.02e-01 120 chr3L:7529371-7529491 1.22e-02 64_[+2(4.34e-06)]_48 chr2L:13382508-13382628 9.95e-01 120 chrX:19637128-19637248 2.49e-04 7_[+3(4.10e-05)]_65_[+1(2.73e-05)]_\ 32 chrX:6528637-6528757 9.97e-01 120 chr2L:17590086-17590206 3.63e-01 45_[+1(7.78e-05)]_67 chr2L:452992-453112 2.89e-04 67_[+3(1.14e-05)]_18_[+1(1.80e-05)]_\ 19 chrX:9466293-9466413 8.59e-03 6_[+2(2.83e-05)]_29_[+2(3.57e-05)]_\ 69 chrX:11373470-11373590 7.57e-01 120 chrX:1899629-1899749 1.30e-03 30_[+2(1.15e-05)]_41_[+1(5.55e-05)]_\ 33 chrX:3448124-3448244 9.25e-01 120 chr3L:3225559-3225679 6.02e-03 80_[+1(7.78e-05)]_32 chrX:16694607-16694727 2.39e-01 120 chr3R:16305208-16305328 6.08e-02 50_[+1(4.14e-06)]_62 chrX:5873357-5873477 2.46e-01 120 chrX:4691351-4691471 9.19e-01 120 chr2R:17573387-17573507 4.41e-01 120 chrX:13838347-13838467 9.96e-01 120 chr3R:23763615-23763735 9.98e-01 120 chr2L:5302431-5302551 9.90e-01 120 chr2L:2038727-2038847 5.18e-01 120 chr2L:9908713-9908833 7.13e-04 36_[+5(2.16e-05)]_10_[+2(1.88e-05)]_\ 58 chrX:14810568-14810688 7.12e-01 120 chrX:2685267-2685387 8.86e-01 120 chr2R:6036551-6036671 3.83e-04 43_[+3(1.14e-05)]_58_[+2(1.15e-05)]_\ 3 chr2L:8542361-8542481 2.85e-02 49_[+2(5.20e-05)]_63 chr2L:5007485-5007605 1.06e-02 109_[+2(4.34e-06)]_3 chr3R:18226306-18226426 3.26e-02 120 chrX:10930656-10930776 5.58e-03 61_[+1(1.80e-05)]_51 chr3R:8313093-8313213 2.42e-03 35_[+2(3.57e-05)]_25_[+4(3.27e-05)]_\ 44 chr3L:5603916-5604036 7.47e-04 7_[+5(7.01e-05)]_105 chr2L:295018-295138 1.26e-02 105_[+1(1.80e-05)]_7 chr3R:16573618-16573738 1.11e-02 9_[+1(1.11e-05)]_103 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************