******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG14710.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:5526899-5527019 1.0000 120 chr3L:13928946-13929066 1.0000 120 chr3L:9062955-9063075 1.0000 120 chr2L:3308646-3308766 1.0000 120 chr3L:8109006-8109126 1.0000 120 chr2L:8400335-8400455 1.0000 120 chr2R:11853111-11853231 1.0000 120 chr2R:20870692-20870812 1.0000 120 chr2L:6048658-6048778 1.0000 120 chr2R:22635895-22636015 1.0000 120 chr3L:10882777-10882897 1.0000 120 chrX:11797070-11797190 1.0000 120 chr3L:3466319-3466439 1.0000 120 chr3L:22879170-22879290 1.0000 120 chr3R:14663132-14663252 1.0000 120 chr2L:11789829-11789949 1.0000 120 chr3L:3055003-3055123 1.0000 120 chr3R:11236160-11236280 1.0000 120 chr2R:16347476-16347596 1.0000 120 chr3L:15509512-15509632 1.0000 120 chr2R:5754236-5754356 1.0000 120 chr2R:21025018-21025138 1.0000 120 chr3L:19229138-19229258 1.0000 120 chr2R:14235554-14235674 1.0000 120 chrX:15992284-15992404 1.0000 120 chr2L:12097739-12097859 1.0000 120 chr2L:8072840-8072960 1.0000 120 chrX:6683752-6683872 1.0000 120 chr3L:4102952-4103072 1.0000 120 chr3L:16408136-16408256 1.0000 120 chr3L:203652-203772 1.0000 120 chrX:11124729-11124849 1.0000 120 chr2R:13409947-13410067 1.0000 120 chr3L:22878079-22878199 1.0000 120 chrX:8442303-8442423 1.0000 120 chr3R:22462052-22462172 1.0000 120 chrX:6225789-6225909 1.0000 120 chr2L:4578166-4578286 1.0000 120 chr3R:21889412-21889532 1.0000 120 chrX:4131106-4131226 1.0000 120 chrX:16448483-16448603 1.0000 120 chrX:6661458-6661578 1.0000 120 chr3R:4728598-4728718 1.0000 120 chrX:7286728-7286848 1.0000 120 chr3R:13646889-13647009 1.0000 120 chr3R:11237660-11237780 1.0000 120 chr3R:26452397-26452517 1.0000 120 chr2R:22637678-22637798 1.0000 120 chr3R:18658500-18658620 1.0000 120 chr2L:1885461-1885581 1.0000 120 chr3R:4677406-4677526 1.0000 120 chr3R:22747570-22747690 1.0000 120 chr2L:21263801-21263921 1.0000 120 chr3L:10879005-10879125 1.0000 120 chr2L:5525828-5525948 1.0000 120 chr2L:18666374-18666494 1.0000 120 chr3R:14890142-14890262 1.0000 120 chr2R:13414998-13415118 1.0000 120 chr2R:14757919-14758039 1.0000 120 chr2R:13414679-13414799 1.0000 120 chr2L:19958607-19958727 1.0000 120 chr2R:16344402-16344522 1.0000 120 chr3R:22745551-22745671 1.0000 120 chrX:6365809-6365929 1.0000 120 chr3R:20252453-20252573 1.0000 120 chr2R:11852819-11852939 1.0000 120 chr3L:4119946-4120066 1.0000 120 chr3R:16282483-16282603 1.0000 120 chr3L:8296945-8297065 1.0000 120 chrX:6225583-6225703 1.0000 120 chr3L:13502602-13502722 1.0000 120 chr3L:16408337-16408457 1.0000 120 chr3R:26863135-26863255 1.0000 120 chr2R:12140296-12140416 1.0000 120 chr2L:5527990-5528110 1.0000 120 chr3R:29503541-29503661 1.0000 120 chrX:19824111-19824231 1.0000 120 chr2R:17572750-17572870 1.0000 120 chrX:19492282-19492402 1.0000 120 chrX:17907584-17907704 1.0000 120 chr3L:15498875-15498995 1.0000 120 chr3L:7641657-7641777 1.0000 120 chr3L:15524123-15524243 1.0000 120 chr2R:21657973-21658093 1.0000 120 chr3L:16408924-16409044 1.0000 120 chr3L:5499045-5499165 1.0000 120 chr2L:12093673-12093793 1.0000 120 chr2R:13410176-13410296 1.0000 120 chr2R:24787353-24787473 1.0000 120 chrX:11983975-11984095 1.0000 120 chr3R:23358560-23358680 1.0000 120 chrX:15762859-15762979 1.0000 120 chr2R:24033845-24033965 1.0000 120 chr2L:13549517-13549637 1.0000 120 chr2R:8163456-8163576 1.0000 120 chrX:7291315-7291435 1.0000 120 chr2R:9291786-9291906 1.0000 120 chrX:13811544-13811664 1.0000 120 chr3L:1803035-1803155 1.0000 120 chr2R:24797417-24797537 1.0000 120 chr3R:16453839-16453959 1.0000 120 chr2L:6050688-6050808 1.0000 120 chr2R:12138678-12138798 1.0000 120 chr3L:16730821-16730941 1.0000 120 chr2L:12575242-12575362 1.0000 120 chr2R:4829122-4829242 1.0000 120 chr2R:21659968-21660088 1.0000 120 chr3R:16299594-16299714 1.0000 120 chr3L:6756530-6756650 1.0000 120 chr2L:19589030-19589150 1.0000 120 chr3L:10886033-10886153 1.0000 120 chrX:16593543-16593663 1.0000 120 chr3L:1803240-1803360 1.0000 120 chr3L:16051006-16051126 1.0000 120 chr3R:24876959-24877079 1.0000 120 chr3L:19598935-19599055 1.0000 120 chr2R:16336302-16336422 1.0000 120 chr3R:29088161-29088281 1.0000 120 chr3R:6810819-6810939 1.0000 120 chr3R:5463289-5463409 1.0000 120 chrX:17298342-17298462 1.0000 120 chrX:14234193-14234313 1.0000 120 chr3R:26452599-26452719 1.0000 120 chrX:15096549-15096669 1.0000 120 chrX:13744659-13744779 1.0000 120 chr2L:6852033-6852153 1.0000 120 chr3R:17671145-17671265 1.0000 120 chrX:13722125-13722245 1.0000 120 chr2R:22640151-22640271 1.0000 120 chr2R:17001925-17002045 1.0000 120 chr3R:22468193-22468313 1.0000 120 chr3R:21013912-21014032 1.0000 120 chrX:6373046-6373166 1.0000 120 chrX:16446976-16447096 1.0000 120 chr2L:13613418-13613538 1.0000 120 chr3R:17149431-17149551 1.0000 120 chr2R:4824329-4824449 1.0000 120 chr3R:7530486-7530606 1.0000 120 chr2L:6323900-6324020 1.0000 120 chr3R:9763466-9763586 1.0000 120 chr2L:7182023-7182143 1.0000 120 chr3R:22580642-22580762 1.0000 120 chr3R:29857454-29857574 1.0000 120 chr3R:29131014-29131134 1.0000 120 chr3L:17024226-17024346 1.0000 120 chr3L:21941903-21942023 1.0000 120 chr2R:11691128-11691248 1.0000 120 chr3R:12431096-12431216 1.0000 120 chr3R:21825268-21825388 1.0000 120 chr3L:5134046-5134166 1.0000 120 chr2R:22562171-22562291 1.0000 120 chr3L:12444187-12444307 1.0000 120 chr3R:11235040-11235160 1.0000 120 chrX:17078254-17078374 1.0000 120 chrX:10367852-10367972 1.0000 120 chr3L:4108112-4108232 1.0000 120 chr2R:11679309-11679429 1.0000 120 chr2R:17019557-17019677 1.0000 120 chr2R:20967255-20967375 1.0000 120 chr2R:22561967-22562087 1.0000 120 chr3L:10698311-10698431 1.0000 120 chrX:15710609-15710729 1.0000 120 chr2L:19053951-19054071 1.0000 120 chrX:11816684-11816804 1.0000 120 chrX:1059722-1059842 1.0000 120 chr2L:3466078-3466198 1.0000 120 chrX:15066494-15066614 1.0000 120 chr2L:15491383-15491503 1.0000 120 chr3R:9551819-9551939 1.0000 120 chr2L:2365182-2365302 1.0000 120 chr2R:14871170-14871290 1.0000 120 chr3R:17088097-17088217 1.0000 120 chrX:1215131-1215251 1.0000 120 chr2L:6971698-6971818 1.0000 120 chr2R:8170161-8170281 1.0000 120 chr3R:17670863-17670983 1.0000 120 chr3R:9050684-9050804 1.0000 120 chr3R:13011407-13011527 1.0000 120 chr2L:6854020-6854140 1.0000 120 chr3R:9003926-9004046 1.0000 120 chr2L:12172834-12172954 1.0000 120 chr2L:9586070-9586190 1.0000 120 chr3R:22367402-22367522 1.0000 120 chr3R:15857568-15857688 1.0000 120 chr2R:22212626-22212746 1.0000 120 chr2R:12151106-12151226 1.0000 120 chrX:15746494-15746614 1.0000 120 chr3L:18872609-18872729 1.0000 120 chr2L:2192390-2192510 1.0000 120 chrX:6684046-6684166 1.0000 120 chr2R:20643866-20643986 1.0000 120 chrX:8461256-8461376 1.0000 120 chrX:17636116-17636236 1.0000 120 chr2L:3303612-3303732 1.0000 120 chr2R:17870965-17871085 1.0000 120 chr3R:29725736-29725856 1.0000 120 chr3R:11628543-11628663 1.0000 120 chr3L:18102197-18102317 1.0000 120 chr2L:2214126-2214246 1.0000 120 chrX:15710816-15710936 1.0000 120 chrX:7323807-7323927 1.0000 120 chr3R:6657434-6657554 1.0000 120 chr2L:294955-295075 1.0000 120 chr2L:2216207-2216327 1.0000 120 chr2R:10731486-10731606 1.0000 120 chrX:18858060-18858180 1.0000 120 chr3L:12471504-12471624 1.0000 120 chr3L:4254618-4254738 1.0000 120 chr3L:13403204-13403324 1.0000 120 chr3L:13390003-13390123 1.0000 120 chr3R:18928757-18928877 1.0000 120 chrX:13783532-13783652 1.0000 120 chr3L:3978077-3978197 1.0000 120 chr3L:14559802-14559922 1.0000 120 chr2L:10362814-10362934 1.0000 120 chr2L:21179789-21179909 1.0000 120 chr3L:2377575-2377695 1.0000 120 chr2L:9996686-9996806 1.0000 120 chr3L:14961164-14961284 1.0000 120 chr2L:11813827-11813947 1.0000 120 chr3R:23061353-23061473 1.0000 120 chr3L:6054859-6054979 1.0000 120 chrX:9256059-9256179 1.0000 120 chr2L:544625-544745 1.0000 120 chrX:7706599-7706719 1.0000 120 chr3L:12414809-12414929 1.0000 120 chr3L:146326-146446 1.0000 120 chr3L:23125856-23125976 1.0000 120 chrX:10854878-10854998 1.0000 120 chr2L:8308299-8308419 1.0000 120 chr2R:13485446-13485566 1.0000 120 chr3R:4400039-4400159 1.0000 120 chr2R:8067799-8067919 1.0000 120 chr2L:20204758-20204878 1.0000 120 chr2R:14604133-14604253 1.0000 120 chr2R:16955306-16955426 1.0000 120 chr2L:9912705-9912825 1.0000 120 chr3R:16624931-16625051 1.0000 120 chr2L:6047916-6048036 1.0000 120 chr2L:5445973-5446093 1.0000 120 chrX:16655128-16655248 1.0000 120 chr3L:12750043-12750163 1.0000 120 chrX:20251208-20251328 1.0000 120 chr3R:24753670-24753790 1.0000 120 chr2L:7998775-7998895 1.0000 120 chr3R:6657649-6657769 1.0000 120 chr3R:26945410-26945530 1.0000 120 chr3L:17529945-17530065 1.0000 120 chrX:15712493-15712613 1.0000 120 chr3L:692905-693025 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG14710/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG14710.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.319 C 0.184 G 0.188 T 0.309 Background letter frequencies (from file dataset with add-one prior applied): A 0.319 C 0.184 G 0.188 T 0.309 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GKDCACAC MEME-1 width = 8 sites = 95 llr = 828 E-value = 1.3e-073 ******************************************************************************** -------------------------------------------------------------------------------- Motif GKDCACAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::31a:a: pos.-specific C ::17:a:a probability G a62::::: matrix T :441:::: bits 2.4 * * * 2.2 * * * 2.0 * * * 1.7 * *** Relative 1.5 * **** Entropy 1.2 * **** (12.6 bits) 1.0 ** ***** 0.7 ** ***** 0.5 ** ***** 0.2 ** ***** 0.0 -------- Multilevel GGTCACAC consensus TA sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKDCACAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:26945410-26945530 23 6.92e-06 TCAACAGAAT GGTCACAC TTTATAAATA chr3L:12750043-12750163 84 6.92e-06 GTGCAGTAGT GGTCACAC TGTCGGGAGG chr2L:6047916-6048036 63 6.92e-06 GGGCTAGGGT GGTCACAC TGGCGCAGTA chr3L:146326-146446 76 6.92e-06 CATTTAAATT GGTCACAC TAAGTGGGGC chr3L:12471504-12471624 20 6.92e-06 TATAACCTTC GGTCACAC CAATTCATAG chr2R:10731486-10731606 107 6.92e-06 CTGCCCGGAG GGTCACAC TATCCA chr3R:29725736-29725856 100 6.92e-06 TGCGCGGTGT GGTCACAC TGCTTGGTGG chr2R:17019557-17019677 14 6.92e-06 GGCTCAATAT GGTCACAC TTTAAATAAA chr3R:22580642-22580762 89 6.92e-06 CATAAGGTGT GGTCACAC CATTCTGCTG chrX:16446976-16447096 75 6.92e-06 GATTGCTTCT GGTCACAC TGGAAAGGTG chrX:14234193-14234313 80 6.92e-06 GCAAGAGTGT GGTCACAC TGTTGGCAGA chr3L:16051006-16051126 45 6.92e-06 TGCTAAATGG GGTCACAC TGTTCAAGGT chr2R:12138678-12138798 73 6.92e-06 ATCGAAATGC GGTCACAC TAGACAGCTG chrX:7291315-7291435 83 6.92e-06 TTCTAGCAGG GGTCACAC TGTTGGCGCA chr2R:8163456-8163576 110 6.92e-06 GCTGCCGTAT GGTCACAC TCC chrX:15762859-15762979 56 6.92e-06 CACGCACGTG GGTCACAC TGCCATCGTA chrX:17907584-17907704 109 6.92e-06 CCCGCGCTGT GGTCACAC TGAC chr3R:22745551-22745671 90 6.92e-06 GTCAGCAAAC GGTCACAC TGGCACTAGT chr2R:16344402-16344522 111 6.92e-06 TCCAAGGAGG GGTCACAC TG chr2L:19958607-19958727 44 6.92e-06 TTCGAGATGT GGTCACAC TTCTCTGCAT chr3L:10879005-10879125 88 6.92e-06 CCTCAATTAT GGTCACAC TGGTCGAAAG chr3R:22747570-22747690 49 6.92e-06 GATTGTGTGT GGTCACAC TAGTGGGGGG chr3R:4728598-4728718 38 6.92e-06 GGAGCGCTGG GGTCACAC TGGTGGGCGG chrX:6683752-6683872 78 6.92e-06 CCGTAAGTGT GGTCACAC TAACGCCTTG chr3L:15509512-15509632 60 6.92e-06 AACTGATTGT GGTCACAC TGCTGCTGCT chr2R:20870692-20870812 39 6.92e-06 AGTGGGAAAG GGTCACAC TGACTAAATA chr2R:8170161-8170281 82 1.11e-05 GCAAACAAAC GGGCACAC TACTTTTTGT chrX:15710609-15710729 49 1.11e-05 CACGGGCGAG GGGCACAC TGGCAGGGCC chrX:17078254-17078374 66 1.11e-05 TAATCATTTC GGGCACAC TGCTCAAGGG chrX:13744659-13744779 40 1.11e-05 AGCCGCTGGC GGGCACAC ACTGGCCGAA chr3R:5463289-5463409 89 1.11e-05 GCAGGAAAAG GGGCACAC TGGCAGACCC chr2R:11679309-11679429 95 1.83e-05 TTATATGCAC GGACACAC CTATCGACGA chrX:11983975-11984095 68 1.83e-05 AATCGGAGGT GGACACAC TGGCCAGCCA chrX:6225583-6225703 23 1.83e-05 AATACGGTAT GGACACAC TGCAAAGTGT chr2L:11789829-11789949 106 1.83e-05 TCCTTGGAGT GGACACAC TGGCCGC chr3L:10882777-10882897 94 1.83e-05 TAAAAACTGC GGACACAC TGAAAGACAT chrX:19492282-19492402 91 2.24e-05 CAAGGCGAGG GGCCACAC TGTTTCCAAT chr3R:4677406-4677526 98 2.24e-05 TAGCCGATAG GGCCACAC TCGTGTCTAT chr2R:14604133-14604253 35 4.07e-05 AGATGAATGG GTGCACAC TATTTGGATT chrX:1059722-1059842 72 4.07e-05 TTGAAACAGT GTGCACAC ATCTCTAGGC chr2R:22561967-22562087 86 4.07e-05 CTGCCAGTGT GTGCACAC TGCGCAGCAG chr2R:4829122-4829242 94 4.07e-05 ATGGCAGTGT GTGCACAC TATTAGTGGA chr3L:13502602-13502722 44 4.07e-05 GGCAGCCAAT GTGCACAC ACCACTAACG chr3R:14890142-14890262 50 4.07e-05 CAGCCAGTGT GTGCACAC CAGGGCTATT chr3R:18658500-18658620 38 4.07e-05 TTTTTCCAGT GTGCACAC ACGCGCGCTT chr2R:22637678-22637798 36 4.07e-05 AAATACCGGT GTGCACAC ACTGTCAAGG chr3R:13646889-13647009 52 4.07e-05 AAAGAAGTGT GTGCACAC CCTTGGAAAA chrX:6661458-6661578 17 4.07e-05 ATCGTGGTGT GTGCACAC TGATACACAG chrX:11797070-11797190 34 4.07e-05 TTTCCATGAT GTGCACAC ACTGTTATCC chr3L:13928946-13929066 21 4.07e-05 GCGCCAGTGA GTGCACAC CACATTACAG chr2R:20967255-20967375 62 5.25e-05 GTGTGAGTGT GTACACAC CGCTCTTTGC chr2L:13613418-13613538 44 5.25e-05 TTGTTGGTGT GTACACAC TCATTCATCC chrX:6373046-6373166 91 5.25e-05 TACTTGGTGT GTACACAC TGCGTAGCGA chr2L:6852033-6852153 8 5.25e-05 GAAGTAT GTACACAC TGCATAGAAT chr3R:6810819-6810939 75 5.25e-05 TCTCCAATGT GTACACAC ACAAGGGGTA chr3L:15524123-15524243 72 5.25e-05 AAGTTAGTGT GTACACAC ATTAGTTCTG chrX:19824111-19824231 58 5.25e-05 CGTCAAGTGT GTACACAC TAGAAATTCG chr2L:1885461-1885581 83 5.25e-05 GGCTTGGTGT GTACACAC TTTGAAGGCC chrX:7286728-7286848 105 5.25e-05 GGTGGCGTGT GTACACAC TGGGGCCA chr3L:203652-203772 60 5.25e-05 GGTTGTGTGT GTACACAC TTGTTTGCCA chr3L:16408136-16408256 56 5.25e-05 CTTCCAGTGT GTACACAC GTCCGCACGA chr3R:11236160-11236280 52 5.25e-05 TAGCCAGTGT GTACACAC CACGCACATG chr3L:22879170-22879290 105 5.25e-05 GGCCCTGTGT GTACACAC TGTTACAT chr2L:5526899-5527019 67 5.25e-05 AGCTAGGTGT GTACACAC TGCCGCACAC chr3R:21013912-21014032 44 5.92e-05 CCATCAGTGT GTCCACAC TGCACTATGA chr3L:8109006-8109126 49 5.92e-05 CGACCAGTGT GTCCACAC CAGAAAAGTT chr3R:26452397-26452517 103 7.12e-05 ATAGGGATGG GGTAACAC TATTTTGGTA chr3L:3466319-3466439 30 7.12e-05 TTTAGCGAAT GGTAACAC TCCCAAGCGC chr2R:11853111-11853231 86 7.12e-05 TCACCGGTGT GGTAACAC TGGCCGGACA chr2L:8400335-8400455 77 9.02e-05 CCTTTGGTGT GGTTACAC TGGCTTCCAT chrX:15712493-15712613 34 1.04e-04 GTTGTTTCAT GCTCACAC AACAAAATTT chr2L:19589030-19589150 68 1.21e-04 ACCCTAGTGT GGAAACAC TGGCTGCCGC chr2R:17870965-17871085 92 1.40e-04 GCGCGCACAT GGCAACAC TGGCGTCACA chrX:17298342-17298462 68 1.40e-04 ATGTGGGTGT GGCAACAC TGTCTTGCTG chr3R:16299594-16299714 47 1.40e-04 CAAAGCCGGG GGCAACAC TGGGCAATCT chr2L:13549517-13549637 94 1.40e-04 TATCAAATGT GGCAACAC TGGTTCCATA chr3L:15498875-15498995 93 1.40e-04 CGCTCTGTAT GGCAACAC TGTAGCACGC chr3L:3055003-3055123 75 1.73e-04 TACCGGGTGT GGTGACAC TGATTTTGGG chr3R:4400039-4400159 34 2.09e-04 AAAATTGAGG GTTTACAC TTCTAACCAA chr3R:11628543-11628663 88 2.09e-04 TTTTATTCAA GTTTACAC GTCTGCCCGA chr2L:4578166-4578286 32 2.09e-04 TTTGTCAAGT GTTTACAC ACCGAGATAT chr3L:19229138-19229258 97 2.09e-04 CAGAAAGTGT GTGAACAC TGGCAGTCTC chr2L:544625-544745 90 2.32e-04 TCTGTGGTGG GGTCGCAC CGCCACCAAA chr2L:12093673-12093793 28 2.32e-04 TTACGAATGC GGTCGCAC TAAGATGTGA chr3L:4119946-4120066 58 2.32e-04 ATGTACAAGT GTGTACAC AGTGTCTTTC chr2L:21263801-21263921 94 2.32e-04 AATTTCATGT GTGTACAC ATTTACACGT chr2R:14235554-14235674 113 2.32e-04 CATTTGTGGT GTGTACAC chr2R:22635895-22636015 42 2.32e-04 CGCGGCCAGT GTGTACAC CCCTTTTCAA chrX:6684046-6684166 86 2.38e-04 AATCAGTCTA GCCCACAC AGATATCGAA chr3L:7641657-7641777 1 2.38e-04 . GCCCACAC TTGGGCGCTA chr3R:6657649-6657769 76 2.66e-04 CATTTATAAG GTAAACAC GAAGACCAGA chr2R:12140296-12140416 29 2.66e-04 TTAATGGTGT GGAGACAC TGTGACAGCT chr2L:2365182-2365302 101 3.01e-04 ACGCTCTATC GTATACAC TTTTATCAAT chr3R:12431096-12431216 36 3.01e-04 TCCAGTCTTG GGCGACAC CTGCGGCGAA chr2R:21025018-21025138 78 3.01e-04 CTGCTCGTGT GTATACAC TGGCGAACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKDCACAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:26945410-26945530 6.9e-06 22_[+1]_90 chr3L:12750043-12750163 6.9e-06 83_[+1]_29 chr2L:6047916-6048036 6.9e-06 62_[+1]_50 chr3L:146326-146446 6.9e-06 75_[+1]_37 chr3L:12471504-12471624 6.9e-06 19_[+1]_93 chr2R:10731486-10731606 6.9e-06 106_[+1]_6 chr3R:29725736-29725856 6.9e-06 99_[+1]_13 chr2R:17019557-17019677 6.9e-06 13_[+1]_99 chr3R:22580642-22580762 6.9e-06 88_[+1]_24 chrX:16446976-16447096 6.9e-06 74_[+1]_38 chrX:14234193-14234313 6.9e-06 79_[+1]_33 chr3L:16051006-16051126 6.9e-06 44_[+1]_68 chr2R:12138678-12138798 6.9e-06 72_[+1]_40 chrX:7291315-7291435 6.9e-06 82_[+1]_30 chr2R:8163456-8163576 6.9e-06 109_[+1]_3 chrX:15762859-15762979 6.9e-06 55_[+1]_57 chrX:17907584-17907704 6.9e-06 108_[+1]_4 chr3R:22745551-22745671 6.9e-06 89_[+1]_23 chr2R:16344402-16344522 6.9e-06 110_[+1]_2 chr2L:19958607-19958727 6.9e-06 43_[+1]_69 chr3L:10879005-10879125 6.9e-06 87_[+1]_25 chr3R:22747570-22747690 6.9e-06 48_[+1]_64 chr3R:4728598-4728718 6.9e-06 37_[+1]_75 chrX:6683752-6683872 6.9e-06 77_[+1]_35 chr3L:15509512-15509632 6.9e-06 59_[+1]_53 chr2R:20870692-20870812 6.9e-06 38_[+1]_74 chr2R:8170161-8170281 1.1e-05 81_[+1]_31 chrX:15710609-15710729 1.1e-05 48_[+1]_64 chrX:17078254-17078374 1.1e-05 65_[+1]_47 chrX:13744659-13744779 1.1e-05 39_[+1]_73 chr3R:5463289-5463409 1.1e-05 88_[+1]_24 chr2R:11679309-11679429 1.8e-05 94_[+1]_18 chrX:11983975-11984095 1.8e-05 67_[+1]_45 chrX:6225583-6225703 1.8e-05 22_[+1]_90 chr2L:11789829-11789949 1.8e-05 105_[+1]_7 chr3L:10882777-10882897 1.8e-05 93_[+1]_19 chrX:19492282-19492402 2.2e-05 90_[+1]_22 chr3R:4677406-4677526 2.2e-05 97_[+1]_15 chr2R:14604133-14604253 4.1e-05 34_[+1]_78 chrX:1059722-1059842 4.1e-05 71_[+1]_41 chr2R:22561967-22562087 4.1e-05 85_[+1]_27 chr2R:4829122-4829242 4.1e-05 93_[+1]_19 chr3L:13502602-13502722 4.1e-05 43_[+1]_69 chr3R:14890142-14890262 4.1e-05 49_[+1]_63 chr3R:18658500-18658620 4.1e-05 37_[+1]_75 chr2R:22637678-22637798 4.1e-05 35_[+1]_77 chr3R:13646889-13647009 4.1e-05 51_[+1]_61 chrX:6661458-6661578 4.1e-05 16_[+1]_96 chrX:11797070-11797190 4.1e-05 33_[+1]_79 chr3L:13928946-13929066 4.1e-05 20_[+1]_92 chr2R:20967255-20967375 5.2e-05 61_[+1]_51 chr2L:13613418-13613538 5.2e-05 43_[+1]_69 chrX:6373046-6373166 5.2e-05 90_[+1]_22 chr2L:6852033-6852153 5.2e-05 7_[+1]_105 chr3R:6810819-6810939 5.2e-05 74_[+1]_38 chr3L:15524123-15524243 5.2e-05 71_[+1]_41 chrX:19824111-19824231 5.2e-05 57_[+1]_55 chr2L:1885461-1885581 5.2e-05 82_[+1]_30 chrX:7286728-7286848 5.2e-05 104_[+1]_8 chr3L:203652-203772 5.2e-05 59_[+1]_53 chr3L:16408136-16408256 5.2e-05 55_[+1]_57 chr3R:11236160-11236280 5.2e-05 51_[+1]_61 chr3L:22879170-22879290 5.2e-05 104_[+1]_8 chr2L:5526899-5527019 5.2e-05 66_[+1]_46 chr3R:21013912-21014032 5.9e-05 43_[+1]_69 chr3L:8109006-8109126 5.9e-05 48_[+1]_64 chr3R:26452397-26452517 7.1e-05 102_[+1]_10 chr3L:3466319-3466439 7.1e-05 29_[+1]_83 chr2R:11853111-11853231 7.1e-05 85_[+1]_27 chr2L:8400335-8400455 9e-05 76_[+1]_36 chrX:15712493-15712613 0.0001 33_[+1]_79 chr2L:19589030-19589150 0.00012 67_[+1]_45 chr2R:17870965-17871085 0.00014 91_[+1]_21 chrX:17298342-17298462 0.00014 67_[+1]_45 chr3R:16299594-16299714 0.00014 46_[+1]_66 chr2L:13549517-13549637 0.00014 93_[+1]_19 chr3L:15498875-15498995 0.00014 92_[+1]_20 chr3L:3055003-3055123 0.00017 74_[+1]_38 chr3R:4400039-4400159 0.00021 33_[+1]_79 chr3R:11628543-11628663 0.00021 87_[+1]_25 chr2L:4578166-4578286 0.00021 31_[+1]_81 chr3L:19229138-19229258 0.00021 96_[+1]_16 chr2L:544625-544745 0.00023 89_[+1]_23 chr2L:12093673-12093793 0.00023 27_[+1]_85 chr3L:4119946-4120066 0.00023 57_[+1]_55 chr2L:21263801-21263921 0.00023 93_[+1]_19 chr2R:14235554-14235674 0.00023 112_[+1] chr2R:22635895-22636015 0.00023 41_[+1]_71 chrX:6684046-6684166 0.00024 85_[+1]_27 chr3L:7641657-7641777 0.00024 [+1]_112 chr3R:6657649-6657769 0.00027 75_[+1]_37 chr2R:12140296-12140416 0.00027 28_[+1]_84 chr2L:2365182-2365302 0.0003 100_[+1]_12 chr3R:12431096-12431216 0.0003 35_[+1]_77 chr2R:21025018-21025138 0.0003 77_[+1]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKDCACAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GKDCACAC width=8 seqs=95 chr3R:26945410-26945530 ( 23) GGTCACAC 1 chr3L:12750043-12750163 ( 84) GGTCACAC 1 chr2L:6047916-6048036 ( 63) GGTCACAC 1 chr3L:146326-146446 ( 76) GGTCACAC 1 chr3L:12471504-12471624 ( 20) GGTCACAC 1 chr2R:10731486-10731606 ( 107) GGTCACAC 1 chr3R:29725736-29725856 ( 100) GGTCACAC 1 chr2R:17019557-17019677 ( 14) GGTCACAC 1 chr3R:22580642-22580762 ( 89) GGTCACAC 1 chrX:16446976-16447096 ( 75) GGTCACAC 1 chrX:14234193-14234313 ( 80) GGTCACAC 1 chr3L:16051006-16051126 ( 45) GGTCACAC 1 chr2R:12138678-12138798 ( 73) GGTCACAC 1 chrX:7291315-7291435 ( 83) GGTCACAC 1 chr2R:8163456-8163576 ( 110) GGTCACAC 1 chrX:15762859-15762979 ( 56) GGTCACAC 1 chrX:17907584-17907704 ( 109) GGTCACAC 1 chr3R:22745551-22745671 ( 90) GGTCACAC 1 chr2R:16344402-16344522 ( 111) GGTCACAC 1 chr2L:19958607-19958727 ( 44) GGTCACAC 1 chr3L:10879005-10879125 ( 88) GGTCACAC 1 chr3R:22747570-22747690 ( 49) GGTCACAC 1 chr3R:4728598-4728718 ( 38) GGTCACAC 1 chrX:6683752-6683872 ( 78) GGTCACAC 1 chr3L:15509512-15509632 ( 60) GGTCACAC 1 chr2R:20870692-20870812 ( 39) GGTCACAC 1 chr2R:8170161-8170281 ( 82) GGGCACAC 1 chrX:15710609-15710729 ( 49) GGGCACAC 1 chrX:17078254-17078374 ( 66) GGGCACAC 1 chrX:13744659-13744779 ( 40) GGGCACAC 1 chr3R:5463289-5463409 ( 89) GGGCACAC 1 chr2R:11679309-11679429 ( 95) GGACACAC 1 chrX:11983975-11984095 ( 68) GGACACAC 1 chrX:6225583-6225703 ( 23) GGACACAC 1 chr2L:11789829-11789949 ( 106) GGACACAC 1 chr3L:10882777-10882897 ( 94) GGACACAC 1 chrX:19492282-19492402 ( 91) GGCCACAC 1 chr3R:4677406-4677526 ( 98) GGCCACAC 1 chr2R:14604133-14604253 ( 35) GTGCACAC 1 chrX:1059722-1059842 ( 72) GTGCACAC 1 chr2R:22561967-22562087 ( 86) GTGCACAC 1 chr2R:4829122-4829242 ( 94) GTGCACAC 1 chr3L:13502602-13502722 ( 44) GTGCACAC 1 chr3R:14890142-14890262 ( 50) GTGCACAC 1 chr3R:18658500-18658620 ( 38) GTGCACAC 1 chr2R:22637678-22637798 ( 36) GTGCACAC 1 chr3R:13646889-13647009 ( 52) GTGCACAC 1 chrX:6661458-6661578 ( 17) GTGCACAC 1 chrX:11797070-11797190 ( 34) GTGCACAC 1 chr3L:13928946-13929066 ( 21) GTGCACAC 1 chr2R:20967255-20967375 ( 62) GTACACAC 1 chr2L:13613418-13613538 ( 44) GTACACAC 1 chrX:6373046-6373166 ( 91) GTACACAC 1 chr2L:6852033-6852153 ( 8) GTACACAC 1 chr3R:6810819-6810939 ( 75) GTACACAC 1 chr3L:15524123-15524243 ( 72) GTACACAC 1 chrX:19824111-19824231 ( 58) GTACACAC 1 chr2L:1885461-1885581 ( 83) GTACACAC 1 chrX:7286728-7286848 ( 105) GTACACAC 1 chr3L:203652-203772 ( 60) GTACACAC 1 chr3L:16408136-16408256 ( 56) GTACACAC 1 chr3R:11236160-11236280 ( 52) GTACACAC 1 chr3L:22879170-22879290 ( 105) GTACACAC 1 chr2L:5526899-5527019 ( 67) GTACACAC 1 chr3R:21013912-21014032 ( 44) GTCCACAC 1 chr3L:8109006-8109126 ( 49) GTCCACAC 1 chr3R:26452397-26452517 ( 103) GGTAACAC 1 chr3L:3466319-3466439 ( 30) GGTAACAC 1 chr2R:11853111-11853231 ( 86) GGTAACAC 1 chr2L:8400335-8400455 ( 77) GGTTACAC 1 chrX:15712493-15712613 ( 34) GCTCACAC 1 chr2L:19589030-19589150 ( 68) GGAAACAC 1 chr2R:17870965-17871085 ( 92) GGCAACAC 1 chrX:17298342-17298462 ( 68) GGCAACAC 1 chr3R:16299594-16299714 ( 47) GGCAACAC 1 chr2L:13549517-13549637 ( 94) GGCAACAC 1 chr3L:15498875-15498995 ( 93) GGCAACAC 1 chr3L:3055003-3055123 ( 75) GGTGACAC 1 chr3R:4400039-4400159 ( 34) GTTTACAC 1 chr3R:11628543-11628663 ( 88) GTTTACAC 1 chr2L:4578166-4578286 ( 32) GTTTACAC 1 chr3L:19229138-19229258 ( 97) GTGAACAC 1 chr2L:544625-544745 ( 90) GGTCGCAC 1 chr2L:12093673-12093793 ( 28) GGTCGCAC 1 chr3L:4119946-4120066 ( 58) GTGTACAC 1 chr2L:21263801-21263921 ( 94) GTGTACAC 1 chr2R:14235554-14235674 ( 113) GTGTACAC 1 chr2R:22635895-22636015 ( 42) GTGTACAC 1 chrX:6684046-6684166 ( 86) GCCCACAC 1 chr3L:7641657-7641777 ( 1) GCCCACAC 1 chr3R:6657649-6657769 ( 76) GTAAACAC 1 chr2R:12140296-12140416 ( 29) GGAGACAC 1 chr2L:2365182-2365302 ( 101) GTATACAC 1 chr3R:12431096-12431216 ( 36) GGCGACAC 1 chr2R:21025018-21025138 ( 78) GTATACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKDCACAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.30471 E= 1.3e-073 -1321 -1321 241 -1321 -1321 -254 157 41 -34 -54 30 33 -146 202 -257 -156 162 -1321 -315 -1321 -1321 244 -1321 -1321 165 -1321 -1321 -1321 -1321 244 -1321 -1321 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKDCACAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 95 E= 1.3e-073 0.000000 0.000000 1.000000 0.000000 0.000000 0.031579 0.557895 0.410526 0.252632 0.126316 0.231579 0.389474 0.115789 0.747368 0.031579 0.105263 0.978947 0.000000 0.021053 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKDCACAC MEME-1 regular expression -------------------------------------------------------------------------------- G[GT][TAG]CACAC -------------------------------------------------------------------------------- Time 7.37 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTKRCC MEME-2 width = 8 sites = 58 llr = 527 E-value = 1.0e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::14:1 pos.-specific C :1:1::a9 probability G a:a:55:: matrix T :9:931:: bits 2.4 * * 2.2 * * ** 2.0 * * ** 1.7 * * ** Relative 1.5 * * ** Entropy 1.2 **** ** (13.1 bits) 1.0 **** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGGCC consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:11679309-11679429 15 4.04e-06 CCAAAAGTCA GTGTGGCC ACACCAAAAC chr3R:16453839-16453959 10 4.04e-06 TATTCCACT GTGTGGCC TTTTATCGAA chr3L:1803035-1803155 26 4.04e-06 AACTGCAGAT GTGTGGCC AGACTTCGGG chrX:8442303-8442423 27 4.04e-06 AATAACAAAA GTGTGGCC ACCGCATAAG chr3L:12750043-12750163 17 1.09e-05 ATAAAACTGA GTGTGACC GTAGCCGGGG chr3L:12414809-12414929 3 1.09e-05 CA GTGTGACC ACGAACGTTT chr2L:2192390-2192510 1 1.09e-05 . GTGTGACC AGAGGAGATA chr2L:6971698-6971818 17 1.09e-05 TGAGTAGCAA GTGTGACC CCCGCGCGGT chr2L:3466078-3466198 2 1.09e-05 A GTGTGACC GCAGTGTGCC chr3R:29857454-29857574 30 1.09e-05 TGTGGAAACA GTGTGACC ACAGCAAAGT chr2R:17001925-17002045 11 1.09e-05 CGAATTGTTA GTGTGACC GTCATGCGGC chr3R:29088161-29088281 68 1.09e-05 TATTTTTCCA GTGTGACC ACAGCGCGCT chr2L:12575242-12575362 21 1.09e-05 AACAATCTGA GTGTGACC CTGTGCCAAG chr3L:16730821-16730941 56 1.09e-05 CTATCGCGCG GTGTGACC CTTTGTACTT chr2R:24787353-24787473 53 1.09e-05 ACTTAGACCA GTGTGACC GCAATCGTTT chrX:17907584-17907704 61 1.09e-05 ACCTTTCCAT GTGTGACC ATTGCAGCTG chr2R:17572750-17572870 41 1.09e-05 TACCACTACA GTGTGACC GTAGGATAGC chr3R:16282483-16282603 83 1.09e-05 CACTGCAGCA GTGTGACC ACAATCTTGT chr3R:22745551-22745671 25 1.09e-05 GCGCGTGCGA GTGTGACC GTTTTCTATG chr3L:4102952-4103072 33 1.09e-05 CATTGGGCCG GTGTGACC CCCATTTCTG chr2R:16347476-16347596 61 1.09e-05 TTATCGATAA GTGTGACC ACATCGATAG chr3L:9062955-9063075 16 1.09e-05 GTTACAAGCA GTGTGACC ACTCCTTAGT chrX:10854878-10854998 28 1.75e-05 GCGGCCAAGA GTGTTGCC ACCGCGTTGT chr3R:9003926-9004046 59 1.75e-05 AGCTGAACGC GTGTTGCC ATATCAAGTT chr2R:24797417-24797537 59 1.75e-05 ATACTACTCA GTGTTGCC TTAAGCCGCC chr2R:9291786-9291906 98 1.75e-05 AGTTCTTCGA GTGTTGCC GAAAATAAAA chr3R:14890142-14890262 28 1.75e-05 CGAAAAAATT GTGTTGCC GTTTCAGCCA chr2L:12097739-12097859 53 1.75e-05 TTCCCGCCCA GTGTTGCC TATGCCACAA chrX:11797070-11797190 70 1.75e-05 GTTACGGCAA GTGTTGCC CTATCGTTCC chr2L:3308646-3308766 29 1.75e-05 CGGCAGAAAA GTGTTGCC ACGTGTGTGT chr3R:16299594-16299714 21 2.23e-05 AGGTGTTGCT GCGTGGCC TGATGTGCCA chr2R:11852819-11852939 67 2.23e-05 TGCAAGAACC GTGCGGCC GCCAATCGGT chr3L:15498875-15498995 43 3.36e-05 TTTTGCATTA GTGTTACC ACACCCACTA chr2L:21263801-21263921 65 3.36e-05 ATGGCTTACA GTGTTACC TCCTTAAACC chr3R:14663132-14663252 49 3.36e-05 TTCTTTAGCA GTGTTACC ATATGGAATA chrX:4131106-4131226 83 4.18e-05 GAACTTGATG GTGCGACC GTTCGTTCCG chr3L:14559802-14559922 4 4.86e-05 TAA GTGTAGCC AATGGCTACT chr2L:12093673-12093793 50 4.86e-05 ATGTGAGTCA GTGTAGCC ACACCTGTTC chr3L:692905-693025 59 5.65e-05 TTTCGAGTCA GCGTTGCC ATACTCATGT chr3L:5134046-5134166 59 5.65e-05 CAATTTTCCA GTGCTGCC ACTCTTATCA chr3R:17149431-17149551 23 5.65e-05 CAGTGGGACA GTGCTGCC ACACCTGCGC chrX:13722125-13722245 100 5.65e-05 TCACAAGCCA GCGTTGCC AACGGTTTGA chr2R:12138678-12138798 49 5.65e-05 AAAAAATGCA GTGCTGCC ACTACGATCG chr3R:29503541-29503661 27 5.65e-05 GCGGTCGCCA GTGCTGCC CCGCGGCCCT chr3L:22878079-22878199 111 6.32e-05 TGTCTGCGGT GTGTGTCC GA chr3L:13390003-13390123 17 7.48e-05 CGTAGGCCCA GTGTAACC GTATTTCGAT chr3L:16408136-16408256 75 8.96e-05 TCCGCACGAA GCGTTACC GTTAGCAATG chrX:15710816-15710936 106 1.04e-04 ATTCTTTTAA GTGTTTCC AAAATAT chr2R:22635895-22636015 11 1.04e-04 ACCTTTTGCT GTGTTTCC TCAACGTGCA chr3R:6657434-6657554 42 1.14e-04 CGATTGCTTG GTGTGGCA GCACTGTAGC chr3R:22747570-22747690 80 1.14e-04 TGGCTGTTGG GTGTGGCA GCACTGGCTG chr2L:6048658-6048778 70 1.14e-04 ACCGGTGGAG GTGTGGCA GCACTGGCCA chr3R:11628543-11628663 2 1.22e-04 A GTGCAGCC CTGCCAATAA chrX:16446976-16447096 38 1.22e-04 ATATTTAATT GCGTAGCC GGCAAAACGT chr2L:4578166-4578286 3 1.22e-04 GC GCGTAGCC AATTGTCACG chrX:11983975-11984095 104 1.32e-04 GAGAGCGCAT GCGTGTCC TCCAAGGAA chr2R:21659968-21660088 31 1.43e-04 GTGCATAGCA GTGTCACC ACACCCCGGC chrX:6225789-6225909 91 2.03e-04 acggctgtgt gtgtgagc agcgtgtgag -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:11679309-11679429 4e-06 14_[+2]_98 chr3R:16453839-16453959 4e-06 9_[+2]_103 chr3L:1803035-1803155 4e-06 25_[+2]_87 chrX:8442303-8442423 4e-06 26_[+2]_86 chr3L:12750043-12750163 1.1e-05 16_[+2]_96 chr3L:12414809-12414929 1.1e-05 2_[+2]_110 chr2L:2192390-2192510 1.1e-05 [+2]_112 chr2L:6971698-6971818 1.1e-05 16_[+2]_96 chr2L:3466078-3466198 1.1e-05 1_[+2]_111 chr3R:29857454-29857574 1.1e-05 29_[+2]_83 chr2R:17001925-17002045 1.1e-05 10_[+2]_102 chr3R:29088161-29088281 1.1e-05 67_[+2]_45 chr2L:12575242-12575362 1.1e-05 20_[+2]_92 chr3L:16730821-16730941 1.1e-05 55_[+2]_57 chr2R:24787353-24787473 1.1e-05 52_[+2]_60 chrX:17907584-17907704 1.1e-05 60_[+2]_52 chr2R:17572750-17572870 1.1e-05 40_[+2]_72 chr3R:16282483-16282603 1.1e-05 82_[+2]_30 chr3R:22745551-22745671 1.1e-05 24_[+2]_88 chr3L:4102952-4103072 1.1e-05 32_[+2]_80 chr2R:16347476-16347596 1.1e-05 60_[+2]_52 chr3L:9062955-9063075 1.1e-05 15_[+2]_97 chrX:10854878-10854998 1.8e-05 27_[+2]_85 chr3R:9003926-9004046 1.8e-05 58_[+2]_54 chr2R:24797417-24797537 1.8e-05 58_[+2]_54 chr2R:9291786-9291906 1.8e-05 97_[+2]_15 chr3R:14890142-14890262 1.8e-05 27_[+2]_85 chr2L:12097739-12097859 1.8e-05 52_[+2]_60 chrX:11797070-11797190 1.8e-05 69_[+2]_43 chr2L:3308646-3308766 1.8e-05 28_[+2]_84 chr3R:16299594-16299714 2.2e-05 20_[+2]_92 chr2R:11852819-11852939 2.2e-05 66_[+2]_46 chr3L:15498875-15498995 3.4e-05 42_[+2]_70 chr2L:21263801-21263921 3.4e-05 64_[+2]_48 chr3R:14663132-14663252 3.4e-05 48_[+2]_64 chrX:4131106-4131226 4.2e-05 82_[+2]_30 chr3L:14559802-14559922 4.9e-05 3_[+2]_109 chr2L:12093673-12093793 4.9e-05 49_[+2]_63 chr3L:692905-693025 5.7e-05 58_[+2]_54 chr3L:5134046-5134166 5.7e-05 58_[+2]_54 chr3R:17149431-17149551 5.7e-05 22_[+2]_90 chrX:13722125-13722245 5.7e-05 99_[+2]_13 chr2R:12138678-12138798 5.7e-05 48_[+2]_64 chr3R:29503541-29503661 5.7e-05 26_[+2]_86 chr3L:22878079-22878199 6.3e-05 110_[+2]_2 chr3L:13390003-13390123 7.5e-05 16_[+2]_96 chr3L:16408136-16408256 9e-05 74_[+2]_38 chrX:15710816-15710936 0.0001 105_[+2]_7 chr2R:22635895-22636015 0.0001 10_[+2]_102 chr3R:6657434-6657554 0.00011 41_[+2]_71 chr3R:22747570-22747690 0.00011 79_[+2]_33 chr2L:6048658-6048778 0.00011 69_[+2]_43 chr3R:11628543-11628663 0.00012 1_[+2]_111 chrX:16446976-16447096 0.00012 37_[+2]_75 chr2L:4578166-4578286 0.00012 2_[+2]_110 chrX:11983975-11984095 0.00013 103_[+2]_9 chr2R:21659968-21660088 0.00014 30_[+2]_82 chrX:6225789-6225909 0.0002 90_[+2]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTKRCC width=8 seqs=58 chr2R:11679309-11679429 ( 15) GTGTGGCC 1 chr3R:16453839-16453959 ( 10) GTGTGGCC 1 chr3L:1803035-1803155 ( 26) GTGTGGCC 1 chrX:8442303-8442423 ( 27) GTGTGGCC 1 chr3L:12750043-12750163 ( 17) GTGTGACC 1 chr3L:12414809-12414929 ( 3) GTGTGACC 1 chr2L:2192390-2192510 ( 1) GTGTGACC 1 chr2L:6971698-6971818 ( 17) GTGTGACC 1 chr2L:3466078-3466198 ( 2) GTGTGACC 1 chr3R:29857454-29857574 ( 30) GTGTGACC 1 chr2R:17001925-17002045 ( 11) GTGTGACC 1 chr3R:29088161-29088281 ( 68) GTGTGACC 1 chr2L:12575242-12575362 ( 21) GTGTGACC 1 chr3L:16730821-16730941 ( 56) GTGTGACC 1 chr2R:24787353-24787473 ( 53) GTGTGACC 1 chrX:17907584-17907704 ( 61) GTGTGACC 1 chr2R:17572750-17572870 ( 41) GTGTGACC 1 chr3R:16282483-16282603 ( 83) GTGTGACC 1 chr3R:22745551-22745671 ( 25) GTGTGACC 1 chr3L:4102952-4103072 ( 33) GTGTGACC 1 chr2R:16347476-16347596 ( 61) GTGTGACC 1 chr3L:9062955-9063075 ( 16) GTGTGACC 1 chrX:10854878-10854998 ( 28) GTGTTGCC 1 chr3R:9003926-9004046 ( 59) GTGTTGCC 1 chr2R:24797417-24797537 ( 59) GTGTTGCC 1 chr2R:9291786-9291906 ( 98) GTGTTGCC 1 chr3R:14890142-14890262 ( 28) GTGTTGCC 1 chr2L:12097739-12097859 ( 53) GTGTTGCC 1 chrX:11797070-11797190 ( 70) GTGTTGCC 1 chr2L:3308646-3308766 ( 29) GTGTTGCC 1 chr3R:16299594-16299714 ( 21) GCGTGGCC 1 chr2R:11852819-11852939 ( 67) GTGCGGCC 1 chr3L:15498875-15498995 ( 43) GTGTTACC 1 chr2L:21263801-21263921 ( 65) GTGTTACC 1 chr3R:14663132-14663252 ( 49) GTGTTACC 1 chrX:4131106-4131226 ( 83) GTGCGACC 1 chr3L:14559802-14559922 ( 4) GTGTAGCC 1 chr2L:12093673-12093793 ( 50) GTGTAGCC 1 chr3L:692905-693025 ( 59) GCGTTGCC 1 chr3L:5134046-5134166 ( 59) GTGCTGCC 1 chr3R:17149431-17149551 ( 23) GTGCTGCC 1 chrX:13722125-13722245 ( 100) GCGTTGCC 1 chr2R:12138678-12138798 ( 49) GTGCTGCC 1 chr3R:29503541-29503661 ( 27) GTGCTGCC 1 chr3L:22878079-22878199 ( 111) GTGTGTCC 1 chr3L:13390003-13390123 ( 17) GTGTAACC 1 chr3L:16408136-16408256 ( 75) GCGTTACC 1 chrX:15710816-15710936 ( 106) GTGTTTCC 1 chr2R:22635895-22636015 ( 11) GTGTTTCC 1 chr3R:6657434-6657554 ( 42) GTGTGGCA 1 chr3R:22747570-22747690 ( 80) GTGTGGCA 1 chr2L:6048658-6048778 ( 70) GTGTGGCA 1 chr3R:11628543-11628663 ( 2) GTGCAGCC 1 chrX:16446976-16447096 ( 38) GCGTAGCC 1 chr2L:4578166-4578286 ( 3) GCGTAGCC 1 chrX:11983975-11984095 ( 104) GCGTGTCC 1 chr2R:21659968-21660088 ( 31) GTGTCACC 1 chrX:6225789-6225909 ( 91) GTGTGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.56683 E= 1.0e-034 -1250 -1250 241 -1250 -1250 -61 -1250 151 -1250 -1250 241 -1250 -1250 -61 -1250 151 -162 -341 151 16 49 -1250 136 -216 -1250 242 -344 -1250 -262 236 -1250 -1250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 1.0e-034 0.000000 0.000000 1.000000 0.000000 0.000000 0.120690 0.000000 0.879310 0.000000 0.000000 1.000000 0.000000 0.000000 0.120690 0.000000 0.879310 0.103448 0.017241 0.534483 0.344828 0.448276 0.000000 0.482759 0.068966 0.000000 0.982759 0.017241 0.000000 0.051724 0.948276 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTKRCC MEME-2 regular expression -------------------------------------------------------------------------------- GTGT[GT][GA]CC -------------------------------------------------------------------------------- Time 13.45 secs. ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-3 width = 8 sites = 60 llr = 482 E-value = 1.9e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 29:::918 pos.-specific C ::1a:::: probability G ::::a::: matrix T 819::192 bits 2.4 ** 2.2 ** 2.0 ** 1.7 ** Relative 1.5 ** Entropy 1.2 ****** (11.6 bits) 1.0 ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15712493-15712613 90 3.31e-05 CACTTAACCA TATCGATA GGCAAAGCCG chr3L:146326-146446 106 3.31e-05 CAAGAGAAAA TATCGATA TCGATTC chr3L:12471504-12471624 48 3.31e-05 AGCTGGTGCG TATCGATA GTCGGCACAT chr2L:2214126-2214246 85 3.31e-05 TATATTCACT TATCGATA TTAGAAACCA chr3R:9003926-9004046 91 3.31e-05 AAACTTGTGA TATCGATA TTAAATGGAG chrX:1215131-1215251 84 3.31e-05 TAGGAATGCC TATCGATA CCTATCGCAT chr3L:4108112-4108232 3 3.31e-05 AT TATCGATA TTCAGAATTA chr3L:17024226-17024346 105 3.31e-05 GTCAGAGATA TATCGATA CCAGAGCG chrX:16446976-16447096 23 3.31e-05 ACAGTGGTGT TATCGATA TTTAATTGCG chr2R:22640151-22640271 25 3.31e-05 TCGATACCGT TATCGATA GTCTGGCTTC chr3L:16051006-16051126 100 3.31e-05 GCTAAAAAGA TATCGATA AGATGCATCA chr2R:8163456-8163576 64 3.31e-05 CAGCTGTTCC TATCGATA GCAATCAGCT chrX:15762859-15762979 74 3.31e-05 TGCCATCGTA TATCGATA CATCCTCGAT chr3L:8296945-8297065 53 3.31e-05 TAAAATGGAA TATCGATA TATGAGCTTC chr2L:19958607-19958727 4 3.31e-05 ATA TATCGATA TATTAATATT chr2R:22637678-22637798 56 3.31e-05 TGTCAAGGCC TATCGATA AGAAATCGAT chrX:4131106-4131226 57 3.31e-05 AGACGAAGAA TATCGATA GTTGCCCGGA chrX:11124729-11124849 30 3.31e-05 GTACTCGAAC TATCGATA GTTGCGTCTC chr3L:4102952-4103072 63 3.31e-05 AAAAAATAAA TATCGATA CACTTTTCAT chrX:15992284-15992404 46 3.31e-05 TTTTAAATAG TATCGATA CCCAACTCGC chr2R:16347476-16347596 52 3.31e-05 ACGGTGGATT TATCGATA AGTGTGACCA chr3R:6657434-6657554 29 6.52e-05 GCAGCTCGCT TATCGATT GCTTGGTGTG chrX:15746494-15746614 111 6.52e-05 ATTACAATAC TATCGATT GT chr2R:21659968-21660088 89 6.52e-05 GATAACGTTC TATCGATT TGTATCGGTC chr3R:29503541-29503661 58 6.52e-05 TTCGCCGGAC TATCGATT GTCGTTGCCA chr2L:5525828-5525948 40 6.52e-05 TCTTATCGTT TATCGATT GCCCTGCATT chrX:6683752-6683872 49 6.52e-05 CGATAGTCAT TATCGATT CTAAAGATAT chr2L:8400335-8400455 34 6.52e-05 TCGCTCTGCT TATCGATT ATTCGATTAC chr2L:5526899-5527019 20 6.52e-05 CTTCTTTGCC TATCGATT GTCTGTGATT chr3R:23061353-23061473 113 9.94e-05 AGCCGATTGC AATCGATA chr2L:6050688-6050808 78 9.94e-05 CGGCGAAAAT AATCGATA ACTGCTAAGA chr2R:9291786-9291906 75 9.94e-05 AAGAAATCGC AATCGATA ACGATAGTTC chr2L:5527990-5528110 41 9.94e-05 AATCCATTAA AATCGATA ACAAACGATA chrX:16448483-16448603 28 9.94e-05 TATAAATATT AATCGATA TCTGAAAATT chr3R:14663132-14663252 87 9.94e-05 TTCAATAAAT AATCGATA AGTTTCACAA chr2L:6048658-6048778 52 9.94e-05 CGCACCCAGC AATCGATA ACCGGTGGAG chrX:9256059-9256179 66 1.19e-04 GGTAAGGGCG TACCGATA GTTGGCATTC chrX:14234193-14234313 101 1.19e-04 TGGCAGAATT TACCGATA GTATCGATGT chrX:17078254-17078374 40 1.51e-04 CACAACATCA TTTCGATA GTATCGCATA chr2R:24033845-24033965 98 1.51e-04 AAATAGCAGA TTTCGATA GGTGAGAACG chr2L:4578166-4578286 60 1.51e-04 TATTTTTCAG TTTCGATA ACTGTAGGTA chr3L:9062955-9063075 92 1.51e-04 CTCCATAACA TTTCGATA AATATTTGAA chr3R:24753670-24753790 92 2.18e-04 TTTTTAAGTC TATCGAAA ACCATTCTGA chrX:13783532-13783652 105 2.18e-04 TCCATTGGGC TATCGTTA TCGTATGA chr3L:4254618-4254738 88 2.18e-04 TTACAGCAAA TATCGTTA ATTTGTTTAC chrX:6684046-6684166 97 2.18e-04 CCCACACAGA TATCGAAA AAGGCGATAT chr3R:17088097-17088217 25 2.18e-04 ataaacagga tatcgtta aataaataat chr3R:16453839-16453959 21 2.18e-04 TGTGGCCTTT TATCGAAA CATCGACACT chr3L:15524123-15524243 29 2.18e-04 TAGTCAACTT TATCGAAA CCGATTCATC chrX:6373046-6373166 3 2.37e-04 tC CATCGATA AATGGTGCAT chr2R:21657973-21658093 82 2.37e-04 CCGTGTGATG CATCGATA AATCAGCTTT chr3L:5134046-5134166 99 2.70e-04 GAGAACAAAA AATCGATT GGCCTCGCCA chr3L:13390003-13390123 28 3.40e-04 TGTAACCGTA TTTCGATT ACTGAGATAT chr2L:3303612-3303732 77 3.40e-04 TTAGCACATT TATCGATG CACCAAAACC chr3R:15857568-15857688 5 3.40e-04 ACAT TTTCGATT GCTATAATAA chr3R:29088161-29088281 9 3.40e-04 GCCCACGG TTTCGATT TTTCTGCACT chr2R:24797417-24797537 6 3.60e-04 AACAA AACCGATA TTGGTTCATT chr3L:3055003-3055123 27 3.60e-04 TGCCGCCGAT AACCGATA ACGAAGCACT chrX:11797070-11797190 52 3.60e-04 ACTGTTATCC AACCGATA GTTACGGCAA chr3R:11236160-11236280 35 4.58e-04 ATTGTTCAAA TATCGTTT AGCCAGTGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15712493-15712613 3.3e-05 89_[+3]_23 chr3L:146326-146446 3.3e-05 105_[+3]_7 chr3L:12471504-12471624 3.3e-05 47_[+3]_65 chr2L:2214126-2214246 3.3e-05 84_[+3]_28 chr3R:9003926-9004046 3.3e-05 90_[+3]_22 chrX:1215131-1215251 3.3e-05 83_[+3]_29 chr3L:4108112-4108232 3.3e-05 2_[+3]_110 chr3L:17024226-17024346 3.3e-05 104_[+3]_8 chrX:16446976-16447096 3.3e-05 22_[+3]_90 chr2R:22640151-22640271 3.3e-05 24_[+3]_88 chr3L:16051006-16051126 3.3e-05 99_[+3]_13 chr2R:8163456-8163576 3.3e-05 63_[+3]_49 chrX:15762859-15762979 3.3e-05 73_[+3]_39 chr3L:8296945-8297065 3.3e-05 52_[+3]_60 chr2L:19958607-19958727 3.3e-05 3_[+3]_109 chr2R:22637678-22637798 3.3e-05 55_[+3]_57 chrX:4131106-4131226 3.3e-05 56_[+3]_56 chrX:11124729-11124849 3.3e-05 29_[+3]_83 chr3L:4102952-4103072 3.3e-05 62_[+3]_50 chrX:15992284-15992404 3.3e-05 45_[+3]_67 chr2R:16347476-16347596 3.3e-05 51_[+3]_61 chr3R:6657434-6657554 6.5e-05 28_[+3]_84 chrX:15746494-15746614 6.5e-05 110_[+3]_2 chr2R:21659968-21660088 6.5e-05 88_[+3]_24 chr3R:29503541-29503661 6.5e-05 57_[+3]_55 chr2L:5525828-5525948 6.5e-05 39_[+3]_73 chrX:6683752-6683872 6.5e-05 48_[+3]_64 chr2L:8400335-8400455 6.5e-05 33_[+3]_79 chr2L:5526899-5527019 6.5e-05 19_[+3]_93 chr3R:23061353-23061473 9.9e-05 112_[+3] chr2L:6050688-6050808 9.9e-05 77_[+3]_35 chr2R:9291786-9291906 9.9e-05 74_[+3]_38 chr2L:5527990-5528110 9.9e-05 40_[+3]_72 chrX:16448483-16448603 9.9e-05 27_[+3]_85 chr3R:14663132-14663252 9.9e-05 86_[+3]_26 chr2L:6048658-6048778 9.9e-05 51_[+3]_61 chrX:9256059-9256179 0.00012 65_[+3]_47 chrX:14234193-14234313 0.00012 100_[+3]_12 chrX:17078254-17078374 0.00015 39_[+3]_73 chr2R:24033845-24033965 0.00015 97_[+3]_15 chr2L:4578166-4578286 0.00015 59_[+3]_53 chr3L:9062955-9063075 0.00015 91_[+3]_21 chr3R:24753670-24753790 0.00022 91_[+3]_21 chrX:13783532-13783652 0.00022 104_[+3]_8 chr3L:4254618-4254738 0.00022 87_[+3]_25 chrX:6684046-6684166 0.00022 96_[+3]_16 chr3R:17088097-17088217 0.00022 24_[+3]_88 chr3R:16453839-16453959 0.00022 20_[+3]_92 chr3L:15524123-15524243 0.00022 28_[+3]_84 chrX:6373046-6373166 0.00024 2_[+3]_110 chr2R:21657973-21658093 0.00024 81_[+3]_31 chr3L:5134046-5134166 0.00027 98_[+3]_14 chr3L:13390003-13390123 0.00034 27_[+3]_85 chr2L:3303612-3303732 0.00034 76_[+3]_36 chr3R:15857568-15857688 0.00034 4_[+3]_108 chr3R:29088161-29088281 0.00034 8_[+3]_104 chr2R:24797417-24797537 0.00036 5_[+3]_107 chr3L:3055003-3055123 0.00036 26_[+3]_86 chrX:11797070-11797190 0.00036 51_[+3]_61 chr3R:11236160-11236280 0.00046 34_[+3]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=60 chrX:15712493-15712613 ( 90) TATCGATA 1 chr3L:146326-146446 ( 106) TATCGATA 1 chr3L:12471504-12471624 ( 48) TATCGATA 1 chr2L:2214126-2214246 ( 85) TATCGATA 1 chr3R:9003926-9004046 ( 91) TATCGATA 1 chrX:1215131-1215251 ( 84) TATCGATA 1 chr3L:4108112-4108232 ( 3) TATCGATA 1 chr3L:17024226-17024346 ( 105) TATCGATA 1 chrX:16446976-16447096 ( 23) TATCGATA 1 chr2R:22640151-22640271 ( 25) TATCGATA 1 chr3L:16051006-16051126 ( 100) TATCGATA 1 chr2R:8163456-8163576 ( 64) TATCGATA 1 chrX:15762859-15762979 ( 74) TATCGATA 1 chr3L:8296945-8297065 ( 53) TATCGATA 1 chr2L:19958607-19958727 ( 4) TATCGATA 1 chr2R:22637678-22637798 ( 56) TATCGATA 1 chrX:4131106-4131226 ( 57) TATCGATA 1 chrX:11124729-11124849 ( 30) TATCGATA 1 chr3L:4102952-4103072 ( 63) TATCGATA 1 chrX:15992284-15992404 ( 46) TATCGATA 1 chr2R:16347476-16347596 ( 52) TATCGATA 1 chr3R:6657434-6657554 ( 29) TATCGATT 1 chrX:15746494-15746614 ( 111) TATCGATT 1 chr2R:21659968-21660088 ( 89) TATCGATT 1 chr3R:29503541-29503661 ( 58) TATCGATT 1 chr2L:5525828-5525948 ( 40) TATCGATT 1 chrX:6683752-6683872 ( 49) TATCGATT 1 chr2L:8400335-8400455 ( 34) TATCGATT 1 chr2L:5526899-5527019 ( 20) TATCGATT 1 chr3R:23061353-23061473 ( 113) AATCGATA 1 chr2L:6050688-6050808 ( 78) AATCGATA 1 chr2R:9291786-9291906 ( 75) AATCGATA 1 chr2L:5527990-5528110 ( 41) AATCGATA 1 chrX:16448483-16448603 ( 28) AATCGATA 1 chr3R:14663132-14663252 ( 87) AATCGATA 1 chr2L:6048658-6048778 ( 52) AATCGATA 1 chrX:9256059-9256179 ( 66) TACCGATA 1 chrX:14234193-14234313 ( 101) TACCGATA 1 chrX:17078254-17078374 ( 40) TTTCGATA 1 chr2R:24033845-24033965 ( 98) TTTCGATA 1 chr2L:4578166-4578286 ( 60) TTTCGATA 1 chr3L:9062955-9063075 ( 92) TTTCGATA 1 chr3R:24753670-24753790 ( 92) TATCGAAA 1 chrX:13783532-13783652 ( 105) TATCGTTA 1 chr3L:4254618-4254738 ( 88) TATCGTTA 1 chrX:6684046-6684166 ( 97) TATCGAAA 1 chr3R:17088097-17088217 ( 25) TATCGTTA 1 chr3R:16453839-16453959 ( 21) TATCGAAA 1 chr3L:15524123-15524243 ( 29) TATCGAAA 1 chrX:6373046-6373166 ( 3) CATCGATA 1 chr2R:21657973-21658093 ( 82) CATCGATA 1 chr3L:5134046-5134166 ( 99) AATCGATT 1 chr3L:13390003-13390123 ( 28) TTTCGATT 1 chr2L:3303612-3303732 ( 77) TATCGATG 1 chr3R:15857568-15857688 ( 5) TTTCGATT 1 chr3R:29088161-29088281 ( 9) TTTCGATT 1 chr2R:24797417-24797537 ( 6) AACCGATA 1 chr3L:3055003-3055123 ( 27) AACCGATA 1 chrX:11797070-11797190 ( 52) AACCGATA 1 chr3R:11236160-11236280 ( 35) TATCGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.80088 E= 1.9e-008 -80 -246 -1255 134 147 -1255 -1255 -141 -1255 -114 -1255 157 -1255 244 -1255 -1255 -1255 -1255 241 -1255 155 -1255 -1255 -221 -226 -1255 -1255 159 127 -1255 -349 -51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 60 E= 1.9e-008 0.183333 0.033333 0.000000 0.783333 0.883333 0.000000 0.000000 0.116667 0.000000 0.083333 0.000000 0.916667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.933333 0.000000 0.000000 0.066667 0.066667 0.000000 0.000000 0.933333 0.766667 0.000000 0.016667 0.216667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-3 regular expression -------------------------------------------------------------------------------- TATCGAT[AT] -------------------------------------------------------------------------------- Time 19.39 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCTGWT MEME-4 width = 8 sites = 29 llr = 280 E-value = 1.6e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCTGWT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a::::5: pos.-specific C a::a:::2 probability G ::a:1a:1 matrix T ::::9:57 bits 2.4 * ** * 2.2 * ** * 2.0 * ** * 1.7 **** * Relative 1.5 **** * Entropy 1.2 ****** (13.9 bits) 1.0 ****** 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGCTGAT consensus TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13783532-13783652 43 2.29e-05 TGTAGCGCCA CAGCTGTT CCAAAATTTG chr2L:3466078-3466198 71 2.29e-05 CTACCTCGAA CAGCTGAT TTCAGTGCTC chr3L:10886033-10886153 86 2.29e-05 AGCAGAGTCA CAGCTGTT CCGGAAAAGC chr2R:12138678-12138798 85 2.29e-05 TCACACTAGA CAGCTGAT TTTTTCCAAC chr2R:8163456-8163576 54 2.29e-05 TAACCGAACT CAGCTGTT CCTATCGATA chr3R:29503541-29503661 74 2.29e-05 TTGTCGTTGC CAGCTGAT CGTGTGGCGC chr2L:5527990-5528110 82 2.29e-05 AGAGGCGCCG CAGCTGAT GCAGTTTGAG chr3R:26863135-26863255 49 2.29e-05 ACTGGTCAAA CAGCTGTT GGGCTTTTGA chr2L:5525828-5525948 63 2.29e-05 GCATTGCGCT CAGCTGTT CGGTTTGGTC chr3R:22747570-22747690 5 2.29e-05 CAAA CAGCTGTT GGCCAGTGAC chr2R:22637678-22637798 10 2.29e-05 GTGTTTCTA CAGCTGTT GACTAAAGAA chrX:6661458-6661578 32 2.29e-05 CACTGATACA CAGCTGTT TTTATTTATT chr2R:21025018-21025138 93 2.29e-05 CACTGGCGAA CAGCTGTT TTTTGTCAAT chr3L:15509512-15509632 99 2.29e-05 CCCTGGCGCT CAGCTGTT CGTGCGGCGA chr3R:11236160-11236280 88 2.29e-05 AAACAGACAA CAGCTGAT GTGCATCTTC chr2L:6048658-6048778 89 2.29e-05 CACTGGCCAT CAGCTGTT CGCGCAGCGT chr2L:5526899-5527019 47 2.29e-05 TACTTGCGAA CAGCTGAT TTAGCTAGGT chr3R:5463289-5463409 106 3.65e-05 CTGGCAGACC CAGCTGAC AGCGTAG chr2L:12093673-12093793 67 3.65e-05 CACACCTGTT CAGCTGAC TGCGGTATGC chr3L:15498875-15498995 72 3.65e-05 TCAACACAAT CAGCTGAC AGCCGCTCTG chr3R:14890142-14890262 77 3.65e-05 TTTCCACGAA CAGCTGAC TGGCCGCAGC chr3L:13928946-13929066 43 3.65e-05 TTACAGATGA CAGCTGAC TGGAGTGTTC chrX:15710609-15710729 66 5.04e-05 CTGGCAGGGC CAGCGGAT CAGCTAGTAT chr2R:13410176-13410296 106 5.04e-05 CATTAAATAT CAGCGGTT CGGTGAC chr2R:13414998-13415118 10 5.04e-05 ATTAAATAT CAGCGGTT CGGTGACCGA chr2R:10731486-10731606 29 6.44e-05 ACACGCGGAA CAGCTGAG TGCGGTATTT chr2L:6323900-6324020 18 6.44e-05 CTCGGCCACG CAGCTGAG AGCGAAAAGC chrX:16446976-16447096 99 7.27e-05 GGTGGGGCAG CAGCGGTC TATCGATTGT chr3L:4108112-4108232 82 7.94e-05 ACCACTGCAT CAGCTGCT TGAAAAAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13783532-13783652 2.3e-05 42_[+4]_70 chr2L:3466078-3466198 2.3e-05 70_[+4]_42 chr3L:10886033-10886153 2.3e-05 85_[+4]_27 chr2R:12138678-12138798 2.3e-05 84_[+4]_28 chr2R:8163456-8163576 2.3e-05 53_[+4]_59 chr3R:29503541-29503661 2.3e-05 73_[+4]_39 chr2L:5527990-5528110 2.3e-05 81_[+4]_31 chr3R:26863135-26863255 2.3e-05 48_[+4]_64 chr2L:5525828-5525948 2.3e-05 62_[+4]_50 chr3R:22747570-22747690 2.3e-05 4_[+4]_108 chr2R:22637678-22637798 2.3e-05 9_[+4]_103 chrX:6661458-6661578 2.3e-05 31_[+4]_81 chr2R:21025018-21025138 2.3e-05 92_[+4]_20 chr3L:15509512-15509632 2.3e-05 98_[+4]_14 chr3R:11236160-11236280 2.3e-05 87_[+4]_25 chr2L:6048658-6048778 2.3e-05 88_[+4]_24 chr2L:5526899-5527019 2.3e-05 46_[+4]_66 chr3R:5463289-5463409 3.7e-05 105_[+4]_7 chr2L:12093673-12093793 3.7e-05 66_[+4]_46 chr3L:15498875-15498995 3.7e-05 71_[+4]_41 chr3R:14890142-14890262 3.7e-05 76_[+4]_36 chr3L:13928946-13929066 3.7e-05 42_[+4]_70 chrX:15710609-15710729 5e-05 65_[+4]_47 chr2R:13410176-13410296 5e-05 105_[+4]_7 chr2R:13414998-13415118 5e-05 9_[+4]_103 chr2R:10731486-10731606 6.4e-05 28_[+4]_84 chr2L:6323900-6324020 6.4e-05 17_[+4]_95 chrX:16446976-16447096 7.3e-05 98_[+4]_14 chr3L:4108112-4108232 7.9e-05 81_[+4]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCTGWT width=8 seqs=29 chrX:13783532-13783652 ( 43) CAGCTGTT 1 chr2L:3466078-3466198 ( 71) CAGCTGAT 1 chr3L:10886033-10886153 ( 86) CAGCTGTT 1 chr2R:12138678-12138798 ( 85) CAGCTGAT 1 chr2R:8163456-8163576 ( 54) CAGCTGTT 1 chr3R:29503541-29503661 ( 74) CAGCTGAT 1 chr2L:5527990-5528110 ( 82) CAGCTGAT 1 chr3R:26863135-26863255 ( 49) CAGCTGTT 1 chr2L:5525828-5525948 ( 63) CAGCTGTT 1 chr3R:22747570-22747690 ( 5) CAGCTGTT 1 chr2R:22637678-22637798 ( 10) CAGCTGTT 1 chrX:6661458-6661578 ( 32) CAGCTGTT 1 chr2R:21025018-21025138 ( 93) CAGCTGTT 1 chr3L:15509512-15509632 ( 99) CAGCTGTT 1 chr3R:11236160-11236280 ( 88) CAGCTGAT 1 chr2L:6048658-6048778 ( 89) CAGCTGTT 1 chr2L:5526899-5527019 ( 47) CAGCTGAT 1 chr3R:5463289-5463409 ( 106) CAGCTGAC 1 chr2L:12093673-12093793 ( 67) CAGCTGAC 1 chr3L:15498875-15498995 ( 72) CAGCTGAC 1 chr3R:14890142-14890262 ( 77) CAGCTGAC 1 chr3L:13928946-13929066 ( 43) CAGCTGAC 1 chrX:15710609-15710729 ( 66) CAGCGGAT 1 chr2R:13410176-13410296 ( 106) CAGCGGTT 1 chr2R:13414998-13415118 ( 10) CAGCGGTT 1 chr2R:10731486-10731606 ( 29) CAGCTGAG 1 chr2L:6323900-6324020 ( 18) CAGCTGAG 1 chrX:16446976-16447096 ( 99) CAGCGGTC 1 chr3L:4108112-4108232 ( 82) CAGCTGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1765 E= 1.6e-008 -1150 244 -1150 -1150 165 -1150 -1150 -1150 -1150 -1150 241 -1150 -1150 244 -1150 -1150 -1150 -1150 -44 148 -1150 -1150 241 -1150 60 -241 -1150 64 -1150 17 -144 123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 1.6e-008 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.137931 0.862069 0.000000 0.000000 1.000000 0.000000 0.482759 0.034483 0.000000 0.482759 0.000000 0.206897 0.068966 0.724138 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWT MEME-4 regular expression -------------------------------------------------------------------------------- CAGCTG[AT][TC] -------------------------------------------------------------------------------- Time 25.24 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCARCGC MEME-5 width = 8 sites = 20 llr = 201 E-value = 1.5e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCARCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a4:3: pos.-specific C 1:a:191a probability G aa::626: matrix T ::::::1: bits 2.4 ** * 2.2 *** * 2.0 *** * 1.7 **** * * Relative 1.5 **** * * Entropy 1.2 **** * * (14.5 bits) 1.0 ****** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCAGCGC consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1059722-1059842 52 2.48e-06 GTAAGCAGCT GGCAGCGC TTTTGAAACA chr2R:17001925-17002045 68 2.48e-06 CGAACGATCT GGCAGCGC TGACTGCAAC chrX:13744659-13744779 71 2.48e-06 GCAGCGATCT GGCAGCGC TCGTCTGCAA chrX:9256059-9256179 100 6.69e-06 TGAGATATCT GGCAACGC CCCGTAGTAT chr3R:22580642-22580762 30 6.69e-06 TAATCGAGCC GGCAACGC CGACGTTCAG chr3R:24876959-24877079 92 6.69e-06 CAGAGTAGTT GGCAACGC GGTGCTTGTA chr3L:22878079-22878199 83 6.69e-06 TGAACCAGGT GGCAACGC GAACGGTCGC chr3R:17670863-17670983 23 1.09e-05 CCTTGGATGT GGCAGCAC TGCCAAAATA chrX:1215131-1215251 34 1.09e-05 GCCTAGCAGC GGCAGCAC GAAAATGGCT chr2R:20967255-20967375 32 1.09e-05 ATCTGACTTT GGCAGCAC TGGCCGCCTC chrX:8442303-8442423 76 1.09e-05 AAGCGGATGT GGCAGCAC TGGCAGCTCG chrX:15710609-15710729 58 1.59e-05 GGGGCACACT GGCAGGGC CAGCGGATCA chr2L:4578166-4578286 107 1.59e-05 CTTTCGATGT GGCAGCCC TAAATG chr3R:26452397-26452517 29 2.30e-05 CTGCCTTAGT GGCAACAC TGCACATCCA chr2R:8067799-8067919 109 2.54e-05 ACTGATTCGT GGCACCGC TAGA chr3R:26945410-26945530 62 3.39e-05 TGCACTTGAT GGCAACCC TAAACATTGG chr2R:17870965-17871085 66 3.39e-05 GCAAACAGCA GGCAAGGC GCAAAAATGC chr3R:4728598-4728718 88 3.39e-05 TGCATACACT GGCAAGGC CGAATGCAGT chr3R:14890142-14890262 103 3.63e-05 GCCAACTTTG CGCAGCGC AGTACATTGG chr3R:6657434-6657554 18 4.04e-05 AAATTGTGGT GGCAGCTC GCTTATCGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1059722-1059842 2.5e-06 51_[+5]_61 chr2R:17001925-17002045 2.5e-06 67_[+5]_45 chrX:13744659-13744779 2.5e-06 70_[+5]_42 chrX:9256059-9256179 6.7e-06 99_[+5]_13 chr3R:22580642-22580762 6.7e-06 29_[+5]_83 chr3R:24876959-24877079 6.7e-06 91_[+5]_21 chr3L:22878079-22878199 6.7e-06 82_[+5]_30 chr3R:17670863-17670983 1.1e-05 22_[+5]_90 chrX:1215131-1215251 1.1e-05 33_[+5]_79 chr2R:20967255-20967375 1.1e-05 31_[+5]_81 chrX:8442303-8442423 1.1e-05 75_[+5]_37 chrX:15710609-15710729 1.6e-05 57_[+5]_55 chr2L:4578166-4578286 1.6e-05 106_[+5]_6 chr3R:26452397-26452517 2.3e-05 28_[+5]_84 chr2R:8067799-8067919 2.5e-05 108_[+5]_4 chr3R:26945410-26945530 3.4e-05 61_[+5]_51 chr2R:17870965-17871085 3.4e-05 65_[+5]_47 chr3R:4728598-4728718 3.4e-05 87_[+5]_25 chr3R:14890142-14890262 3.6e-05 102_[+5]_10 chr3R:6657434-6657554 4e-05 17_[+5]_95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCARCGC width=8 seqs=20 chrX:1059722-1059842 ( 52) GGCAGCGC 1 chr2R:17001925-17002045 ( 68) GGCAGCGC 1 chrX:13744659-13744779 ( 71) GGCAGCGC 1 chrX:9256059-9256179 ( 100) GGCAACGC 1 chr3R:22580642-22580762 ( 30) GGCAACGC 1 chr3R:24876959-24877079 ( 92) GGCAACGC 1 chr3L:22878079-22878199 ( 83) GGCAACGC 1 chr3R:17670863-17670983 ( 23) GGCAGCAC 1 chrX:1215131-1215251 ( 34) GGCAGCAC 1 chr2R:20967255-20967375 ( 32) GGCAGCAC 1 chrX:8442303-8442423 ( 76) GGCAGCAC 1 chrX:15710609-15710729 ( 58) GGCAGGGC 1 chr2L:4578166-4578286 ( 107) GGCAGCCC 1 chr3R:26452397-26452517 ( 29) GGCAACAC 1 chr2R:8067799-8067919 ( 109) GGCACCGC 1 chr3R:26945410-26945530 ( 62) GGCAACCC 1 chr2R:17870965-17871085 ( 66) GGCAAGGC 1 chr3R:4728598-4728718 ( 88) GGCAAGGC 1 chr3R:14890142-14890262 ( 103) CGCAGCGC 1 chr3R:6657434-6657554 ( 18) GGCAGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4069 E= 1.5e-003 -1097 -188 234 -1097 -1097 -1097 241 -1097 -1097 244 -1097 -1097 165 -1097 -1097 -1097 33 -188 155 -1097 -1097 221 -32 -1097 -35 -88 168 -263 -1097 244 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.5e-003 0.000000 0.050000 0.950000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.400000 0.050000 0.550000 0.000000 0.000000 0.850000 0.150000 0.000000 0.250000 0.100000 0.600000 0.050000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCARCGC MEME-5 regular expression -------------------------------------------------------------------------------- GGCA[GA]C[GA]C -------------------------------------------------------------------------------- Time 31.04 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:5526899-5527019 7.03e-05 19_[+3(6.52e-05)]_19_[+4(2.29e-05)]_\ 12_[+1(5.25e-05)]_46 chr3L:13928946-13929066 1.45e-03 20_[+1(4.07e-05)]_14_[+4(3.65e-05)]_\ 70 chr3L:9062955-9063075 4.44e-04 15_[+2(1.09e-05)]_97 chr2L:3308646-3308766 2.14e-03 28_[+2(1.75e-05)]_84 chr3L:8109006-8109126 9.52e-03 48_[+1(5.92e-05)]_64 chr2L:8400335-8400455 5.70e-03 33_[+3(6.52e-05)]_35_[+1(9.02e-05)]_\ 36 chr2R:11853111-11853231 2.43e-02 85_[+1(7.12e-05)]_27 chr2R:20870692-20870812 6.25e-02 38_[+1(6.92e-06)]_49_[+1(4.07e-05)]_\ 17 chr2L:6048658-6048778 4.47e-07 51_[+3(9.94e-05)]_14_[+5(1.09e-05)]_\ 7_[+4(2.29e-05)]_24 chr2R:22635895-22636015 3.87e-02 120 chr3L:10882777-10882897 1.97e-03 37_[+1(4.07e-05)]_48_[+1(1.83e-05)]_\ 19 chrX:11797070-11797190 1.57e-04 33_[+1(4.07e-05)]_28_[+2(1.75e-05)]_\ 43 chr3L:3466319-3466439 1.62e-02 29_[+1(7.12e-05)]_83 chr3L:22879170-22879290 2.99e-02 104_[+1(5.25e-05)]_8 chr3R:14663132-14663252 1.01e-02 48_[+2(3.36e-05)]_30_[+3(9.94e-05)]_\ 26 chr2L:11789829-11789949 1.06e-01 105_[+1(1.83e-05)]_7 chr3L:3055003-3055123 1.34e-02 120 chr3R:11236160-11236280 2.13e-04 51_[+1(5.25e-05)]_28_[+4(2.29e-05)]_\ 25 chr2R:16347476-16347596 6.90e-04 51_[+3(3.31e-05)]_1_[+2(1.09e-05)]_\ 52 chr3L:15509512-15509632 1.11e-05 59_[+1(6.92e-06)]_31_[+4(2.29e-05)]_\ 14 chr2R:5754236-5754356 9.58e-01 120 chr2R:21025018-21025138 1.19e-02 92_[+4(2.29e-05)]_20 chr3L:19229138-19229258 4.00e-02 120 chr2R:14235554-14235674 3.73e-01 120 chrX:15992284-15992404 2.80e-02 45_[+3(3.31e-05)]_45_[+3(6.52e-05)]_\ 14 chr2L:12097739-12097859 1.58e-02 52_[+2(1.75e-05)]_60 chr2L:8072840-8072960 2.45e-01 120 chrX:6683752-6683872 5.12e-04 26_[+1(5.92e-05)]_14_[+3(6.52e-05)]_\ 21_[+1(6.92e-06)]_35 chr3L:4102952-4103072 1.98e-03 32_[+2(1.09e-05)]_22_[+3(3.31e-05)]_\ 50 chr3L:16408136-16408256 1.35e-03 55_[+1(5.25e-05)]_11_[+2(8.96e-05)]_\ 38 chr3L:203652-203772 7.41e-03 59_[+1(5.25e-05)]_53 chrX:11124729-11124849 7.58e-02 29_[+3(3.31e-05)]_83 chr2R:13409947-13410067 7.21e-01 120 chr3L:22878079-22878199 6.22e-04 82_[+5(6.69e-06)]_20_[+2(6.32e-05)]_\ 2 chrX:8442303-8442423 2.47e-05 26_[+2(4.04e-06)]_41_[+5(1.09e-05)]_\ 1_[+5(4.04e-05)]_28 chr3R:22462052-22462172 1.00e+00 120 chrX:6225789-6225909 1.12e-01 120 chr2L:4578166-4578286 3.85e-05 89_[+5(3.39e-05)]_9_[+5(1.59e-05)]_\ 6 chr3R:21889412-21889532 9.94e-01 120 chrX:4131106-4131226 6.53e-03 31_[+2(7.48e-05)]_17_[+3(3.31e-05)]_\ 18_[+2(4.18e-05)]_30 chrX:16448483-16448603 4.80e-02 27_[+3(9.94e-05)]_85 chrX:6661458-6661578 2.87e-04 16_[+1(4.07e-05)]_7_[+4(2.29e-05)]_\ 81 chr3R:4728598-4728718 1.35e-04 37_[+1(6.92e-06)]_42_[+5(3.39e-05)]_\ 25 chrX:7286728-7286848 4.63e-02 104_[+1(5.25e-05)]_8 chr3R:13646889-13647009 4.03e-02 51_[+1(4.07e-05)]_61 chr3R:11237660-11237780 3.72e-01 120 chr3R:26452397-26452517 7.13e-03 28_[+5(2.30e-05)]_66_[+1(7.12e-05)]_\ 10 chr2R:22637678-22637798 1.25e-05 9_[+4(2.29e-05)]_18_[+1(4.07e-05)]_\ 12_[+3(3.31e-05)]_57 chr3R:18658500-18658620 1.73e-02 37_[+1(4.07e-05)]_75 chr2L:1885461-1885581 9.49e-03 82_[+1(5.25e-05)]_30 chr3R:4677406-4677526 4.13e-03 97_[+1(2.24e-05)]_15 chr3R:22747570-22747690 5.14e-07 4_[+4(2.29e-05)]_36_[+1(6.92e-06)]_\ 27_[+5(1.09e-05)]_29 chr2L:21263801-21263921 9.92e-03 64_[+2(3.36e-05)]_48 chr3L:10879005-10879125 5.33e-03 45_[+1(6.92e-06)]_34_[+1(6.92e-06)]_\ 25 chr2L:5525828-5525948 6.85e-04 39_[+3(6.52e-05)]_15_[+4(2.29e-05)]_\ 50 chr2L:18666374-18666494 1.00e+00 120 chr3R:14890142-14890262 1.36e-06 27_[+2(1.75e-05)]_14_[+1(4.07e-05)]_\ 19_[+4(3.65e-05)]_18_[+5(3.63e-05)]_10 chr2R:13414998-13415118 1.87e-01 9_[+4(5.04e-05)]_103 chr2R:14757919-14758039 8.77e-01 120 chr2R:13414679-13414799 7.34e-01 120 chr2L:19958607-19958727 2.34e-03 3_[+3(3.31e-05)]_32_[+1(6.92e-06)]_\ 69 chr2R:16344402-16344522 2.82e-02 110_[+1(6.92e-06)]_2 chr3R:22745551-22745671 1.37e-04 24_[+2(1.09e-05)]_57_[+1(6.92e-06)]_\ 23 chrX:6365809-6365929 2.43e-01 120 chr3R:20252453-20252573 3.00e-01 120 chr2R:11852819-11852939 2.89e-02 66_[+2(2.23e-05)]_46 chr3L:4119946-4120066 2.01e-02 120 chr3R:16282483-16282603 3.80e-03 82_[+2(1.09e-05)]_30 chr3L:8296945-8297065 2.31e-01 52_[+3(3.31e-05)]_60 chrX:6225583-6225703 8.29e-02 22_[+1(1.83e-05)]_90 chr3L:13502602-13502722 6.07e-03 43_[+1(4.07e-05)]_69 chr3L:16408337-16408457 2.69e-01 120 chr3R:26863135-26863255 8.52e-04 48_[+4(2.29e-05)]_64 chr2R:12140296-12140416 2.52e-01 120 chr2L:5527990-5528110 4.46e-04 40_[+3(9.94e-05)]_33_[+4(2.29e-05)]_\ 31 chr3R:29503541-29503661 1.14e-04 26_[+2(5.65e-05)]_23_[+3(6.52e-05)]_\ 8_[+4(2.29e-05)]_39 chrX:19824111-19824231 6.98e-03 57_[+1(5.25e-05)]_55 chr2R:17572750-17572870 1.18e-02 40_[+2(1.09e-05)]_42_[+2(2.23e-05)]_\ 22 chrX:19492282-19492402 6.29e-03 90_[+1(2.24e-05)]_22 chrX:17907584-17907704 3.20e-05 60_[+2(1.09e-05)]_40_[+1(6.92e-06)]_\ 4 chr3L:15498875-15498995 5.84e-06 17_[+2(3.36e-05)]_17_[+2(3.36e-05)]_\ 21_[+4(3.65e-05)]_13_[+5(2.30e-05)]_20 chr3L:7641657-7641777 3.68e-02 120 chr3L:15524123-15524243 7.22e-03 71_[+1(5.25e-05)]_41 chr2R:21657973-21658093 2.42e-01 120 chr3L:16408924-16409044 2.76e-01 120 chr3L:5499045-5499165 5.81e-01 120 chr2L:12093673-12093793 6.90e-04 49_[+2(4.86e-05)]_9_[+4(3.65e-05)]_\ 46 chr2R:13410176-13410296 2.04e-01 105_[+4(5.04e-05)]_7 chr2R:24787353-24787473 3.75e-02 52_[+2(1.09e-05)]_60 chrX:11983975-11984095 5.29e-03 67_[+1(1.83e-05)]_45 chr3R:23358560-23358680 7.38e-01 120 chrX:15762859-15762979 1.28e-04 55_[+1(6.92e-06)]_10_[+3(3.31e-05)]_\ 39 chr2R:24033845-24033965 5.99e-02 120 chr2L:13549517-13549637 1.45e-03 93_[+5(2.30e-05)]_19 chr2R:8163456-8163576 2.59e-06 31_[+1(4.07e-05)]_14_[+4(2.29e-05)]_\ 2_[+3(3.31e-05)]_38_[+1(6.92e-06)]_3 chrX:7291315-7291435 9.17e-03 82_[+1(6.92e-06)]_30 chr2R:9291786-9291906 1.70e-03 74_[+3(9.94e-05)]_15_[+2(1.75e-05)]_\ 15 chrX:13811544-13811664 9.88e-02 120 chr3L:1803035-1803155 6.33e-04 25_[+2(4.04e-06)]_87 chr2R:24797417-24797537 2.71e-02 58_[+2(1.75e-05)]_54 chr3R:16453839-16453959 1.21e-03 9_[+2(4.04e-06)]_103 chr2L:6050688-6050808 1.30e-01 77_[+3(9.94e-05)]_35 chr2R:12138678-12138798 1.46e-05 48_[+2(5.65e-05)]_16_[+1(6.92e-06)]_\ 4_[+4(2.29e-05)]_28 chr3L:16730821-16730941 1.29e-02 55_[+2(1.09e-05)]_57 chr2L:12575242-12575362 1.90e-03 20_[+2(1.09e-05)]_92 chr2R:4829122-4829242 2.68e-02 93_[+1(4.07e-05)]_19 chr2R:21659968-21660088 3.74e-03 88_[+3(6.52e-05)]_24 chr3R:16299594-16299714 1.30e-04 20_[+2(2.23e-05)]_18_[+5(2.30e-05)]_\ 66 chr3L:6756530-6756650 4.67e-01 120 chr2L:19589030-19589150 3.41e-02 120 chr3L:10886033-10886153 6.41e-03 85_[+4(2.29e-05)]_27 chrX:16593543-16593663 8.99e-01 120 chr3L:1803240-1803360 1.94e-02 120 chr3L:16051006-16051126 1.81e-04 44_[+1(6.92e-06)]_26_[+3(3.31e-05)]_\ 13_[+3(3.31e-05)]_13 chr3R:24876959-24877079 4.27e-02 91_[+5(6.69e-06)]_21 chr3L:19598935-19599055 9.81e-01 120 chr2R:16336302-16336422 5.93e-01 120 chr3R:29088161-29088281 1.44e-03 67_[+2(1.09e-05)]_45 chr3R:6810819-6810939 2.03e-01 74_[+1(5.25e-05)]_38 chr3R:5463289-5463409 1.45e-05 88_[+1(1.11e-05)]_9_[+4(3.65e-05)]_\ 7 chrX:17298342-17298462 1.94e-04 67_[+5(2.30e-05)]_45 chrX:14234193-14234313 9.89e-04 79_[+1(6.92e-06)]_33 chr3R:26452599-26452719 3.31e-01 120 chrX:15096549-15096669 7.09e-01 120 chrX:13744659-13744779 5.13e-05 39_[+1(1.11e-05)]_23_[+5(2.48e-06)]_\ 42 chr2L:6852033-6852153 3.55e-01 7_[+1(5.25e-05)]_105 chr3R:17671145-17671265 6.99e-01 120 chrX:13722125-13722245 3.03e-02 52_[+2(5.65e-05)]_39_[+2(5.65e-05)]_\ 13 chr2R:22640151-22640271 8.98e-02 24_[+3(3.31e-05)]_19_[+3(9.94e-05)]_\ 61 chr2R:17001925-17002045 1.55e-04 10_[+2(1.09e-05)]_49_[+5(2.48e-06)]_\ 45 chr3R:22468193-22468313 8.18e-01 120 chr3R:21013912-21014032 1.34e-03 43_[+1(5.92e-05)]_69 chrX:6373046-6373166 4.30e-03 90_[+1(5.25e-05)]_22 chrX:16446976-16447096 3.13e-07 22_[+3(3.31e-05)]_44_[+1(6.92e-06)]_\ 16_[+4(7.27e-05)]_[+3(6.52e-05)]_6 chr2L:13613418-13613538 3.06e-02 43_[+1(5.25e-05)]_69 chr3R:17149431-17149551 1.15e-02 22_[+2(5.65e-05)]_90 chr2R:4824329-4824449 5.67e-01 120 chr3R:7530486-7530606 9.45e-01 120 chr2L:6323900-6324020 2.70e-03 17_[+4(6.44e-05)]_95 chr3R:9763466-9763586 9.99e-01 120 chr2L:7182023-7182143 3.33e-01 120 chr3R:22580642-22580762 1.53e-05 29_[+5(6.69e-06)]_51_[+1(6.92e-06)]_\ 24 chr3R:29857454-29857574 4.19e-02 29_[+2(1.09e-05)]_83 chr3R:29131014-29131134 9.93e-01 120 chr3L:17024226-17024346 3.02e-02 69_[+3(9.94e-05)]_27_[+3(3.31e-05)]_\ 8 chr3L:21941903-21942023 2.73e-01 120 chr2R:11691128-11691248 3.34e-01 120 chr3R:12431096-12431216 4.91e-02 120 chr3R:21825268-21825388 9.26e-01 120 chr3L:5134046-5134166 2.42e-02 58_[+2(5.65e-05)]_54 chr2R:22562171-22562291 5.18e-01 120 chr3L:12444187-12444307 9.92e-01 120 chr3R:11235040-11235160 4.04e-02 120 chrX:17078254-17078374 6.22e-03 65_[+1(1.11e-05)]_47 chrX:10367852-10367972 6.88e-01 120 chr3L:4108112-4108232 4.63e-03 2_[+3(3.31e-05)]_71_[+4(7.94e-05)]_\ 31 chr2R:11679309-11679429 4.02e-05 14_[+2(4.04e-06)]_28_[+2(1.75e-05)]_\ 36_[+1(1.83e-05)]_18 chr2R:17019557-17019677 2.82e-02 13_[+1(6.92e-06)]_99 chr2R:20967255-20967375 3.13e-04 31_[+5(1.09e-05)]_22_[+1(5.25e-05)]_\ 51 chr2R:22561967-22562087 1.02e-03 85_[+1(4.07e-05)]_27 chr3L:10698311-10698431 6.44e-01 120 chrX:15710609-15710729 1.35e-05 25_[+1(6.92e-06)]_15_[+1(1.11e-05)]_\ 1_[+5(1.59e-05)]_[+4(5.04e-05)]_47 chr2L:19053951-19054071 9.88e-01 120 chrX:11816684-11816804 2.78e-01 120 chrX:1059722-1059842 1.10e-05 51_[+5(2.48e-06)]_12_[+1(4.07e-05)]_\ 28_[+5(8.77e-05)]_5 chr2L:3466078-3466198 8.71e-04 1_[+2(1.09e-05)]_42_[+2(1.09e-05)]_\ 11_[+4(2.29e-05)]_42 chrX:15066494-15066614 5.34e-01 120 chr2L:15491383-15491503 8.76e-02 120 chr3R:9551819-9551939 1.00e+00 120 chr2L:2365182-2365302 1.35e-01 120 chr2R:14871170-14871290 9.92e-01 120 chr3R:17088097-17088217 5.15e-01 120 chrX:1215131-1215251 2.69e-05 33_[+5(1.09e-05)]_42_[+3(3.31e-05)]_\ 29 chr2L:6971698-6971818 8.91e-02 16_[+2(1.09e-05)]_96 chr2R:8170161-8170281 6.42e-02 81_[+1(1.11e-05)]_31 chr3R:17670863-17670983 4.41e-03 22_[+5(1.09e-05)]_26_[+5(4.04e-05)]_\ 56 chr3R:9050684-9050804 6.01e-01 120 chr3R:13011407-13011527 9.34e-01 120 chr2L:6854020-6854140 5.72e-02 120 chr3R:9003926-9004046 1.18e-03 17_[+2(5.65e-05)]_33_[+2(1.75e-05)]_\ 24_[+3(3.31e-05)]_22 chr2L:12172834-12172954 6.40e-01 120 chr2L:9586070-9586190 9.78e-01 120 chr3R:22367402-22367522 8.33e-01 120 chr3R:15857568-15857688 3.00e-01 120 chr2R:22212626-22212746 8.84e-01 120 chr2R:12151106-12151226 9.84e-01 120 chrX:15746494-15746614 1.67e-02 110_[+3(6.52e-05)]_2 chr3L:18872609-18872729 9.80e-01 120 chr2L:2192390-2192510 7.16e-03 [+2(1.09e-05)]_112 chrX:6684046-6684166 1.15e-02 120 chr2R:20643866-20643986 9.82e-01 120 chrX:8461256-8461376 6.97e-01 120 chrX:17636116-17636236 6.29e-01 120 chr2L:3303612-3303732 9.43e-03 120 chr2R:17870965-17871085 1.61e-03 65_[+5(3.39e-05)]_18_[+5(2.30e-05)]_\ 21 chr3R:29725736-29725856 1.17e-02 99_[+1(6.92e-06)]_13 chr3R:11628543-11628663 7.35e-03 120 chr3L:18102197-18102317 9.60e-01 120 chr2L:2214126-2214246 2.49e-01 84_[+3(3.31e-05)]_28 chrX:15710816-15710936 2.23e-01 120 chrX:7323807-7323927 1.65e-01 120 chr3R:6657434-6657554 2.11e-05 17_[+5(4.04e-05)]_3_[+3(6.52e-05)]_\ 9_[+5(1.09e-05)]_67 chr2L:294955-295075 9.99e-01 120 chr2L:2216207-2216327 5.62e-01 120 chr2R:10731486-10731606 5.06e-04 28_[+4(6.44e-05)]_70_[+1(6.92e-06)]_\ 6 chrX:18858060-18858180 2.31e-01 120 chr3L:12471504-12471624 6.39e-04 19_[+1(6.92e-06)]_20_[+3(3.31e-05)]_\ 65 chr3L:4254618-4254738 3.62e-01 120 chr3L:13403204-13403324 2.48e-01 120 chr3L:13390003-13390123 6.32e-03 16_[+2(7.48e-05)]_96 chr3R:18928757-18928877 9.63e-01 120 chrX:13783532-13783652 3.86e-03 42_[+4(2.29e-05)]_35_[+4(7.94e-05)]_\ 27 chr3L:3978077-3978197 7.76e-01 120 chr3L:14559802-14559922 2.22e-01 3_[+2(4.86e-05)]_109 chr2L:10362814-10362934 9.87e-01 120 chr2L:21179789-21179909 7.82e-01 120 chr3L:2377575-2377695 8.79e-02 120 chr2L:9996686-9996806 9.94e-01 120 chr3L:14961164-14961284 9.99e-01 120 chr2L:11813827-11813947 1.00e+00 120 chr3R:23061353-23061473 1.33e-01 112_[+3(9.94e-05)] chr3L:6054859-6054979 4.48e-02 120 chrX:9256059-9256179 3.76e-03 99_[+5(6.69e-06)]_13 chr2L:544625-544745 4.81e-03 120 chrX:7706599-7706719 6.58e-01 120 chr3L:12414809-12414929 3.83e-02 2_[+2(1.09e-05)]_110 chr3L:146326-146446 2.17e-03 75_[+1(6.92e-06)]_22_[+3(3.31e-05)]_\ 7 chr3L:23125856-23125976 9.93e-01 120 chrX:10854878-10854998 1.17e-02 27_[+2(1.75e-05)]_85 chr2L:8308299-8308419 7.66e-01 120 chr2R:13485446-13485566 8.93e-01 120 chr3R:4400039-4400159 2.19e-01 120 chr2R:8067799-8067919 2.72e-02 108_[+5(2.54e-05)]_4 chr2L:20204758-20204878 9.00e-01 120 chr2R:14604133-14604253 9.34e-02 34_[+1(4.07e-05)]_78 chr2R:16955306-16955426 8.95e-01 120 chr2L:9912705-9912825 2.84e-01 120 chr3R:16624931-16625051 8.92e-01 120 chr2L:6047916-6048036 9.71e-04 62_[+1(6.92e-06)]_50 chr2L:5445973-5446093 9.74e-01 120 chrX:16655128-16655248 9.81e-01 120 chr3L:12750043-12750163 2.85e-04 16_[+2(1.09e-05)]_59_[+1(6.92e-06)]_\ 29 chrX:20251208-20251328 1.67e-01 120 chr3R:24753670-24753790 5.27e-01 120 chr2L:7998775-7998895 8.96e-02 120 chr3R:6657649-6657769 2.07e-01 120 chr3R:26945410-26945530 2.04e-03 22_[+1(6.92e-06)]_31_[+5(3.39e-05)]_\ 51 chr3L:17529945-17530065 3.75e-01 120 chrX:15712493-15712613 8.48e-04 89_[+3(3.31e-05)]_23 chr3L:692905-693025 1.52e-02 58_[+2(5.65e-05)]_54 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n05.farnam.hpc.yale.internal ********************************************************************************