******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG13894.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:695655-695775 1.0000 120 chr2R:17512006-17512126 1.0000 120 chrX:17208004-17208124 1.0000 120 chr3L:19563171-19563291 1.0000 120 chr2L:17041350-17041470 1.0000 120 chr3R:22565801-22565921 1.0000 120 chr2L:7944318-7944438 1.0000 120 chrX:5337449-5337569 1.0000 120 chrX:6094738-6094858 1.0000 120 chrX:17205187-17205307 1.0000 120 chr3L:13673764-13673884 1.0000 120 chr3R:22562641-22562761 1.0000 120 chr3R:22560365-22560485 1.0000 120 chrX:1270322-1270442 1.0000 120 chr3L:3397448-3397568 1.0000 120 chr3L:9027436-9027556 1.0000 120 chr3R:27740142-27740262 1.0000 120 chr2L:9223405-9223525 1.0000 120 chrX:14184201-14184321 1.0000 120 chrX:16907814-16907934 1.0000 120 chr3L:6133685-6133805 1.0000 120 chr2R:10081196-10081316 1.0000 120 chr3L:12093099-12093219 1.0000 120 chr3R:24070104-24070224 1.0000 120 chrX:14261029-14261149 1.0000 120 chr3R:4678501-4678621 1.0000 120 chr2R:22198286-22198406 1.0000 120 chr2L:53247-53367 1.0000 120 chr3R:25559456-25559576 1.0000 120 chrX:8732518-8732638 1.0000 120 chr3R:15406532-15406652 1.0000 120 chr3R:18643760-18643880 1.0000 120 chr3R:14003984-14004104 1.0000 120 chrX:16736319-16736439 1.0000 120 chr3L:10496021-10496141 1.0000 120 chrX:17206162-17206282 1.0000 120 chr3R:26237635-26237755 1.0000 120 chrX:18197781-18197901 1.0000 120 chr2R:23430882-23431002 1.0000 120 chr2R:16694299-16694419 1.0000 120 chr3L:9283882-9284002 1.0000 120 chr3R:22669955-22670075 1.0000 120 chr3L:20287185-20287305 1.0000 120 chr3R:22390248-22390368 1.0000 120 chr2R:11728871-11728991 1.0000 120 chr3R:18703653-18703773 1.0000 120 chr2R:8055598-8055718 1.0000 120 chr2R:9333617-9333737 1.0000 120 chr2R:19907659-19907779 1.0000 120 chrX:6034880-6035000 1.0000 120 chr3L:13312389-13312509 1.0000 120 chr2R:12808982-12809102 1.0000 120 chr2L:3877150-3877270 1.0000 120 chr2R:8737308-8737428 1.0000 120 chr3L:5788962-5789082 1.0000 120 chr3R:27739410-27739530 1.0000 120 chr2L:1560690-1560810 1.0000 120 chrX:15212996-15213116 1.0000 120 chr2R:21763597-21763717 1.0000 120 chr3L:6811073-6811193 1.0000 120 chr2L:17627285-17627405 1.0000 120 chr2L:434592-434712 1.0000 120 chrX:16719957-16720077 1.0000 120 chr2L:8627308-8627428 1.0000 120 chr3R:7682404-7682524 1.0000 120 chrX:8865201-8865321 1.0000 120 chr2R:7072482-7072602 1.0000 120 chr3R:22975376-22975496 1.0000 120 chrX:9297786-9297906 1.0000 120 chr3R:27741625-27741745 1.0000 120 chr3R:11475429-11475549 1.0000 120 chr2R:17685679-17685799 1.0000 120 chr3R:4553686-4553806 1.0000 120 chr3R:20955992-20956112 1.0000 120 chr3L:20750508-20750628 1.0000 120 chrX:17227593-17227713 1.0000 120 chr3R:4551744-4551864 1.0000 120 chrX:17839658-17839778 1.0000 120 chr3R:7008168-7008288 1.0000 120 chr3L:4570815-4570935 1.0000 120 chr2L:7758752-7758872 1.0000 120 chr3R:24388147-24388267 1.0000 120 chr3R:20723645-20723765 1.0000 120 chr3R:15463981-15464101 1.0000 120 chr3L:3998476-3998596 1.0000 120 chr3R:28447570-28447690 1.0000 120 chr3R:20567649-20567769 1.0000 120 chrX:7751671-7751791 1.0000 120 chr2R:9655126-9655246 1.0000 120 chr3R:10574266-10574386 1.0000 120 chr2R:14764843-14764963 1.0000 120 chr3R:23437500-23437620 1.0000 120 chr3L:5069449-5069569 1.0000 120 chr3R:19693622-19693742 1.0000 120 chr2L:4264686-4264806 1.0000 120 chrX:12827479-12827599 1.0000 120 chr3L:5255624-5255744 1.0000 120 chr2R:17166556-17166676 1.0000 120 chr3L:14651491-14651611 1.0000 120 chrX:14929502-14929622 1.0000 120 chr3R:29646618-29646738 1.0000 120 chr3L:1590337-1590457 1.0000 120 chr2L:10096265-10096385 1.0000 120 chr2R:8404992-8405112 1.0000 120 chr3R:24215556-24215676 1.0000 120 chr3R:20351701-20351821 1.0000 120 chr3L:19246069-19246189 1.0000 120 chr2R:19185727-19185847 1.0000 120 chr3L:4585379-4585499 1.0000 120 chrX:360839-360959 1.0000 120 chrX:10580283-10580403 1.0000 120 chrX:3397906-3398026 1.0000 120 chr3R:30347833-30347953 1.0000 120 chr3R:16602501-16602621 1.0000 120 chr2L:2428638-2428758 1.0000 120 chr3L:4328210-4328330 1.0000 120 chr2R:12914408-12914528 1.0000 120 chr3R:20572986-20573106 1.0000 120 chr4:852480-852600 1.0000 120 chr2L:15945122-15945242 1.0000 120 chr3R:22105186-22105306 1.0000 120 chr3L:17490182-17490302 1.0000 120 chr2L:19686124-19686244 1.0000 120 chr2L:3718468-3718588 1.0000 120 chr2L:1454670-1454790 1.0000 120 chr2L:2835631-2835751 1.0000 120 chr2R:15394260-15394380 1.0000 120 chrX:2909123-2909243 1.0000 120 chr3L:15421922-15422042 1.0000 120 chr3R:26670425-26670545 1.0000 120 chr3R:9617151-9617271 1.0000 120 chr3R:6310490-6310610 1.0000 120 chrX:16623687-16623807 1.0000 120 chr3R:8595921-8596041 1.0000 120 chr2L:11909002-11909122 1.0000 120 chr2R:7164937-7165057 1.0000 120 chr3R:25411360-25411480 1.0000 120 chr3R:13279530-13279650 1.0000 120 chrX:5193911-5194031 1.0000 120 chr3L:703299-703419 1.0000 120 chr3L:20171661-20171781 1.0000 120 chr3R:20598038-20598158 1.0000 120 chr3L:704800-704920 1.0000 120 chr3L:12237633-12237753 1.0000 120 chr2L:4900033-4900153 1.0000 120 chr2R:14266784-14266904 1.0000 120 chrX:20245357-20245477 1.0000 120 chr2R:15153117-15153237 1.0000 120 chr3L:4359180-4359300 1.0000 120 chr3L:9182312-9182432 1.0000 120 chr2R:22318831-22318951 1.0000 120 chr2L:36165-36285 1.0000 120 chr3L:19291594-19291714 1.0000 120 chr3R:7829561-7829681 1.0000 120 chr3L:20765483-20765603 1.0000 120 chrX:8776929-8777049 1.0000 120 chr3L:701937-702057 1.0000 120 chr2R:20159145-20159265 1.0000 120 chr2L:2797325-2797445 1.0000 120 chr2L:4019016-4019136 1.0000 120 chr3L:703533-703653 1.0000 120 chr3R:30520235-30520355 1.0000 120 chr3L:4477795-4477915 1.0000 120 chr2R:23657664-23657784 1.0000 120 chr3R:22045342-22045462 1.0000 120 chrX:9298554-9298674 1.0000 120 chr3R:25412687-25412807 1.0000 120 chrX:18181297-18181417 1.0000 120 chr3R:20985076-20985196 1.0000 120 chr3L:18265682-18265802 1.0000 120 chr2R:11996688-11996808 1.0000 120 chr3L:18018663-18018783 1.0000 120 chrX:16926694-16926814 1.0000 120 chr3L:13776045-13776165 1.0000 120 chr3L:4178868-4178988 1.0000 120 chr2L:9128487-9128607 1.0000 120 chr3R:14063283-14063403 1.0000 120 chr3L:19778657-19778777 1.0000 120 chr3L:15244296-15244416 1.0000 120 chr3L:13763230-13763350 1.0000 120 chrX:17225269-17225389 1.0000 120 chrX:14853412-14853532 1.0000 120 chr3L:18334723-18334843 1.0000 120 chr3L:6256192-6256312 1.0000 120 chr2L:4571467-4571587 1.0000 120 chr3R:8070813-8070933 1.0000 120 chrX:2537601-2537721 1.0000 120 chr2L:19389099-19389219 1.0000 120 chr2L:11892798-11892918 1.0000 120 chrX:15973514-15973634 1.0000 120 chrX:7810059-7810179 1.0000 120 chr3L:22468636-22468756 1.0000 120 chr3L:11718132-11718252 1.0000 120 chr2L:15524548-15524668 1.0000 120 chr2R:5686253-5686373 1.0000 120 chrX:4514769-4514889 1.0000 120 chr2R:14673538-14673658 1.0000 120 chr2L:20904481-20904601 1.0000 120 chrX:14858690-14858810 1.0000 120 chr3L:13147604-13147724 1.0000 120 chr3L:4001639-4001759 1.0000 120 chr3L:14686392-14686512 1.0000 120 chrX:19504286-19504406 1.0000 120 chr3L:15206746-15206866 1.0000 120 chr2R:5919697-5919817 1.0000 120 chr3R:7377335-7377455 1.0000 120 chr2L:8170739-8170859 1.0000 120 chr2L:17236201-17236321 1.0000 120 chr3R:20256421-20256541 1.0000 120 chr3L:2982379-2982499 1.0000 120 chr3L:7726829-7726949 1.0000 120 chr3L:9210393-9210513 1.0000 120 chr2L:10684495-10684615 1.0000 120 chr2L:8737001-8737121 1.0000 120 chr3L:1281028-1281148 1.0000 120 chr2L:4060900-4061020 1.0000 120 chrX:16155366-16155486 1.0000 120 chr3L:4117629-4117749 1.0000 120 chrX:11516659-11516779 1.0000 120 chrX:20245603-20245723 1.0000 120 chr3R:15120374-15120494 1.0000 120 chr2R:22319558-22319678 1.0000 120 chr3R:19551740-19551860 1.0000 120 chr2L:5227364-5227484 1.0000 120 chr2R:10866526-10866646 1.0000 120 chr3R:9127849-9127969 1.0000 120 chr3L:4477994-4478114 1.0000 120 chr3L:11706412-11706532 1.0000 120 chr2L:21069833-21069953 1.0000 120 chr4:275890-276010 1.0000 120 chr2L:146624-146744 1.0000 120 chr3L:19558813-19558933 1.0000 120 chrX:22733597-22733717 1.0000 120 chr3R:23576431-23576551 1.0000 120 chr2R:6223017-6223137 1.0000 120 chr2R:19352870-19352990 1.0000 120 chrX:21126293-21126413 1.0000 120 chr2R:23480122-23480242 1.0000 120 chr2L:3784420-3784540 1.0000 120 chr2L:8889678-8889798 1.0000 120 chrX:14591777-14591897 1.0000 120 chr2L:21807013-21807133 1.0000 120 chr2R:8696292-8696412 1.0000 120 chr2L:77038-77158 1.0000 120 chrX:14588735-14588855 1.0000 120 chr2L:17758764-17758884 1.0000 120 chr3R:14695164-14695284 1.0000 120 chr2R:23664326-23664446 1.0000 120 chrX:2254714-2254834 1.0000 120 chr3R:21962138-21962258 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG13894/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG13894.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.269 C 0.231 G 0.229 T 0.272 Background letter frequencies (from file dataset with add-one prior applied): A 0.269 C 0.231 G 0.229 T 0.272 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TATATATA MEME-1 width = 8 sites = 69 llr = 555 E-value = 3.1e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATATATA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :9:a:8:7 pos.-specific C 111::::1 probability G :::::2:2 matrix T 9:9:a:a: bits 2.1 1.9 * * 1.7 ** * 1.5 ** ** * Relative 1.3 ******* Entropy 1.1 ******* (11.6 bits) 0.9 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TATATATA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATATATA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:17758764-17758884 12 2.87e-05 ACGTATAATA TATATATA TAAGAAATAG chr3R:9127849-9127969 12 2.87e-05 gagatataca tatatata tgccgatgga chrX:4514769-4514889 67 2.87e-05 AAGGTCtata tatatata tatatgtatg chr3L:11718132-11718252 14 2.87e-05 TCCATCCGGC TATATATA TCTATATATC chrX:2537601-2537721 81 2.87e-05 GGGGTATACA TATATATA GGGGCTTCAA chrX:8776929-8777049 73 2.87e-05 ATCGAAAATA TATATATA TACCATATAG chr3L:19291594-19291714 27 2.87e-05 CGATTCTGGG TATATATA GTTACTATAT chr3L:15421922-15422042 84 2.87e-05 tgtatatata tatatata taCCTGTTCC chrX:3397906-3398026 113 2.87e-05 tacatatata tatatata chr3L:5069449-5069569 1 2.87e-05 . tatatata tatataGTCA chr3L:3998476-3998596 69 2.87e-05 TATATATGTA TATATATA AAAGCCGATA chr3R:24388147-24388267 7 2.87e-05 TAGATG TATATATA GTATATATGC chr3L:4570815-4570935 31 2.87e-05 CTGGGAAAGa tatatata aagagcaaag chrX:8865201-8865321 11 2.87e-05 AGATATAGCA TATATATA CAGACCCTCC chr3L:6811073-6811193 99 2.87e-05 TCTGTGGCAC TATATATA TTTGGGATTA chr2L:3877150-3877270 1 2.87e-05 . tatatata taaatatatc chr3R:14003984-14004104 23 2.87e-05 catatatata tatatata ggtataggta chr3R:25559456-25559576 109 2.87e-05 CCGAATTACG TATATATA AGTG chr3R:4678501-4678621 66 2.87e-05 CCTGCGAAAT TATATATA CATATAAAAT chrX:14261029-14261149 76 2.87e-05 GTGTATGGGC TATATATA CCCAGATATG chr3L:12093099-12093219 53 2.87e-05 agtctgtgga tatatata tggctatAAT chr3R:21962138-21962258 17 5.31e-05 ATATAACGGA TATATATG CACGGGTGTC chr2R:23664326-23664446 45 5.31e-05 GGCGCTGTAT TATATATG ACACCCACAA chr3L:14686392-14686512 32 5.31e-05 ACCAAAAAAA TATATATG TAAGCTAAAG chr3L:13763230-13763350 113 5.31e-05 AGtatatatt tatatatg chr2R:14266784-14266904 95 5.31e-05 ATCTAACGTC TATATATG CGCCAGGCAT chr3L:12237633-12237753 84 5.31e-05 TAACTTTGCA TATATATG AAGCTATTCA chr3R:27739410-27739530 26 5.31e-05 TGGTAGATGG TATATATG GTATATGGTA chrX:14588735-14588855 47 7.75e-05 tagatataga tatatgta gctgcgaata chr2L:4571467-4571587 74 7.75e-05 GTACGAGTAT TATATGTA GATACACCGG chr2L:9128487-9128607 40 7.75e-05 ACCTTCTGGC TATATGTA AATGCTTTTT chr3L:13776045-13776165 65 7.75e-05 CTCATTTTTC TATATGTA TGTACATATA chr3R:7682404-7682524 107 7.75e-05 TGTGCACGGC TATATGTA TATGAG chr2R:19907659-19907779 15 7.75e-05 CACGCAGAAA TATATGTA CGTACGTCTG chrX:17205187-17205307 31 7.75e-05 GACATTTACA TATATGTA ATATTTGATC chr3L:19563171-19563291 18 7.75e-05 ATCAGCTTCC TATATGTA CATATATGCT chrX:11516659-11516779 15 1.02e-04 GAAAAAACTC TATATATC GAGCAGAACT chr3L:18265682-18265802 87 1.02e-04 TACATACGAG TATATATC TTTTGGCTTG chr2L:3718468-3718588 102 1.02e-04 GACTATGGGG TATATATC GGGGCAGGTT chr3R:22565801-22565921 32 1.02e-04 TATTCCAATC TATATATC TTTTGCGAAC chr2R:6223017-6223137 81 1.26e-04 GCTCGACGAC TACATATA AGCCCACTTA chr3R:23576431-23576551 86 1.26e-04 GTCAGGTGTA TACATATA TATTGGGTGA chr3L:7726829-7726949 11 1.26e-04 CCTATATACA TACATATA CACACATATG chr3R:24215556-24215676 96 1.26e-04 TTTCCCAATA TACATATA ACTTATCGGC chr3L:5255624-5255744 97 1.26e-04 GATACATGCA TACATATA CACAGAGGCC chr2R:22198286-22198406 46 1.26e-04 TTGCATAGCT TACATATA TATCTGAGCC chr2L:8737001-8737121 11 1.51e-04 AATAGGTGGC CATATATA CTATACAAAA chr3L:9182312-9182432 104 1.51e-04 agcctatatt catatata cgtatacac chr2L:15945122-15945242 74 1.51e-04 GATCGTGCCT CATATATA CTATATAGTA chrX:16155366-16155486 55 1.72e-04 TATGCTTGGC TATATGTG GAATGGTATA chr3L:6256192-6256312 61 1.72e-04 CCACCCCGAT TATATGTG TATATGGGTA chr3L:20765483-20765603 104 1.72e-04 GTTGGGCAAA TATATGTG TTTGTTCAG chr3L:13673764-13673884 100 1.72e-04 AGAATGCGGA TATATGTG TGCGAAAAGT chrX:12827479-12827599 91 1.92e-04 CGACTCCTGT TATATGTC ATTTGTATTA chrX:16736319-16736439 51 1.92e-04 CACATTTCAA TATATGTC CAAATCCAAA chr2R:11728871-11728991 3 2.17e-04 CT TCTATATA GCGACAACAA chr3L:6133685-6133805 89 2.17e-04 GACATCTTCA TCTATATA GTTTGCATAG chr2L:7944318-7944438 19 2.17e-04 CCGCTTGTTG TCTATATA CTCCCCTATT chr3R:15406532-15406652 104 2.79e-04 CGGCGGGTGG CATATATG GCGGTAGTA chr3R:23437500-23437620 25 3.45e-04 ttccgatccg tagatata ttatacgata chr2R:8055598-8055718 83 3.45e-04 ACCCAATAGA TAGATATA ATACATAATG chr3R:22669955-22670075 10 3.45e-04 gtGATTCCC TACATATC TTCGACGGCT chr3L:15206746-15206866 10 3.66e-04 ATACTAGGC CATATATC GTGGACACGC chr3R:20723645-20723765 100 3.66e-04 AATGTGGCTC CATATATC AATACCTGAT chr3L:20287185-20287305 84 3.66e-04 GCGATGTCGC CATATATC CTGCCCATTC chr2L:8170739-8170859 8 3.90e-04 ATTGGCA TATAGATA TCGGGgtatc chr3L:13312389-13312509 66 3.90e-04 CAACCAGAGA TATAGATA GAGGTCACCA chrX:2909123-2909243 67 4.32e-04 TGTGCCATCC CACATATA GAGTCGAGAG chr3L:4328210-4328330 67 4.32e-04 GAATGGCCAC TCTATATG GCCAGAGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATATATA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:17758764-17758884 2.9e-05 11_[+1]_101 chr3R:9127849-9127969 2.9e-05 11_[+1]_101 chrX:4514769-4514889 2.9e-05 66_[+1]_46 chr3L:11718132-11718252 2.9e-05 13_[+1]_99 chrX:2537601-2537721 2.9e-05 80_[+1]_32 chrX:8776929-8777049 2.9e-05 72_[+1]_40 chr3L:19291594-19291714 2.9e-05 26_[+1]_86 chr3L:15421922-15422042 2.9e-05 83_[+1]_29 chrX:3397906-3398026 2.9e-05 112_[+1] chr3L:5069449-5069569 2.9e-05 [+1]_112 chr3L:3998476-3998596 2.9e-05 68_[+1]_44 chr3R:24388147-24388267 2.9e-05 6_[+1]_106 chr3L:4570815-4570935 2.9e-05 30_[+1]_82 chrX:8865201-8865321 2.9e-05 10_[+1]_102 chr3L:6811073-6811193 2.9e-05 98_[+1]_14 chr2L:3877150-3877270 2.9e-05 [+1]_112 chr3R:14003984-14004104 2.9e-05 22_[+1]_90 chr3R:25559456-25559576 2.9e-05 108_[+1]_4 chr3R:4678501-4678621 2.9e-05 65_[+1]_47 chrX:14261029-14261149 2.9e-05 75_[+1]_37 chr3L:12093099-12093219 2.9e-05 52_[+1]_60 chr3R:21962138-21962258 5.3e-05 16_[+1]_96 chr2R:23664326-23664446 5.3e-05 44_[+1]_68 chr3L:14686392-14686512 5.3e-05 31_[+1]_81 chr3L:13763230-13763350 5.3e-05 112_[+1] chr2R:14266784-14266904 5.3e-05 94_[+1]_18 chr3L:12237633-12237753 5.3e-05 83_[+1]_29 chr3R:27739410-27739530 5.3e-05 25_[+1]_87 chrX:14588735-14588855 7.7e-05 46_[+1]_66 chr2L:4571467-4571587 7.7e-05 73_[+1]_39 chr2L:9128487-9128607 7.7e-05 39_[+1]_73 chr3L:13776045-13776165 7.7e-05 64_[+1]_48 chr3R:7682404-7682524 7.7e-05 106_[+1]_6 chr2R:19907659-19907779 7.7e-05 14_[+1]_98 chrX:17205187-17205307 7.7e-05 30_[+1]_82 chr3L:19563171-19563291 7.7e-05 17_[+1]_95 chrX:11516659-11516779 0.0001 14_[+1]_98 chr3L:18265682-18265802 0.0001 86_[+1]_26 chr2L:3718468-3718588 0.0001 101_[+1]_11 chr3R:22565801-22565921 0.0001 31_[+1]_81 chr2R:6223017-6223137 0.00013 80_[+1]_32 chr3R:23576431-23576551 0.00013 85_[+1]_27 chr3L:7726829-7726949 0.00013 10_[+1]_102 chr3R:24215556-24215676 0.00013 95_[+1]_17 chr3L:5255624-5255744 0.00013 96_[+1]_16 chr2R:22198286-22198406 0.00013 45_[+1]_67 chr2L:8737001-8737121 0.00015 10_[+1]_102 chr3L:9182312-9182432 0.00015 103_[+1]_9 chr2L:15945122-15945242 0.00015 73_[+1]_39 chrX:16155366-16155486 0.00017 54_[+1]_58 chr3L:6256192-6256312 0.00017 60_[+1]_52 chr3L:20765483-20765603 0.00017 103_[+1]_9 chr3L:13673764-13673884 0.00017 99_[+1]_13 chrX:12827479-12827599 0.00019 90_[+1]_22 chrX:16736319-16736439 0.00019 50_[+1]_62 chr2R:11728871-11728991 0.00022 2_[+1]_110 chr3L:6133685-6133805 0.00022 88_[+1]_24 chr2L:7944318-7944438 0.00022 18_[+1]_94 chr3R:15406532-15406652 0.00028 103_[+1]_9 chr3R:23437500-23437620 0.00035 24_[+1]_88 chr2R:8055598-8055718 0.00035 82_[+1]_30 chr3R:22669955-22670075 0.00035 9_[+1]_103 chr3L:15206746-15206866 0.00037 9_[+1]_103 chr3R:20723645-20723765 0.00037 99_[+1]_13 chr3L:20287185-20287305 0.00037 83_[+1]_29 chr2L:8170739-8170859 0.00039 7_[+1]_105 chr3L:13312389-13312509 0.00039 65_[+1]_47 chrX:2909123-2909243 0.00043 66_[+1]_46 chr3L:4328210-4328330 0.00043 66_[+1]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATATATA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATATATA width=8 seqs=69 chr2L:17758764-17758884 ( 12) TATATATA 1 chr3R:9127849-9127969 ( 12) TATATATA 1 chrX:4514769-4514889 ( 67) TATATATA 1 chr3L:11718132-11718252 ( 14) TATATATA 1 chrX:2537601-2537721 ( 81) TATATATA 1 chrX:8776929-8777049 ( 73) TATATATA 1 chr3L:19291594-19291714 ( 27) TATATATA 1 chr3L:15421922-15422042 ( 84) TATATATA 1 chrX:3397906-3398026 ( 113) TATATATA 1 chr3L:5069449-5069569 ( 1) TATATATA 1 chr3L:3998476-3998596 ( 69) TATATATA 1 chr3R:24388147-24388267 ( 7) TATATATA 1 chr3L:4570815-4570935 ( 31) TATATATA 1 chrX:8865201-8865321 ( 11) TATATATA 1 chr3L:6811073-6811193 ( 99) TATATATA 1 chr2L:3877150-3877270 ( 1) TATATATA 1 chr3R:14003984-14004104 ( 23) TATATATA 1 chr3R:25559456-25559576 ( 109) TATATATA 1 chr3R:4678501-4678621 ( 66) TATATATA 1 chrX:14261029-14261149 ( 76) TATATATA 1 chr3L:12093099-12093219 ( 53) TATATATA 1 chr3R:21962138-21962258 ( 17) TATATATG 1 chr2R:23664326-23664446 ( 45) TATATATG 1 chr3L:14686392-14686512 ( 32) TATATATG 1 chr3L:13763230-13763350 ( 113) TATATATG 1 chr2R:14266784-14266904 ( 95) TATATATG 1 chr3L:12237633-12237753 ( 84) TATATATG 1 chr3R:27739410-27739530 ( 26) TATATATG 1 chrX:14588735-14588855 ( 47) TATATGTA 1 chr2L:4571467-4571587 ( 74) TATATGTA 1 chr2L:9128487-9128607 ( 40) TATATGTA 1 chr3L:13776045-13776165 ( 65) TATATGTA 1 chr3R:7682404-7682524 ( 107) TATATGTA 1 chr2R:19907659-19907779 ( 15) TATATGTA 1 chrX:17205187-17205307 ( 31) TATATGTA 1 chr3L:19563171-19563291 ( 18) TATATGTA 1 chrX:11516659-11516779 ( 15) TATATATC 1 chr3L:18265682-18265802 ( 87) TATATATC 1 chr2L:3718468-3718588 ( 102) TATATATC 1 chr3R:22565801-22565921 ( 32) TATATATC 1 chr2R:6223017-6223137 ( 81) TACATATA 1 chr3R:23576431-23576551 ( 86) TACATATA 1 chr3L:7726829-7726949 ( 11) TACATATA 1 chr3R:24215556-24215676 ( 96) TACATATA 1 chr3L:5255624-5255744 ( 97) TACATATA 1 chr2R:22198286-22198406 ( 46) TACATATA 1 chr2L:8737001-8737121 ( 11) CATATATA 1 chr3L:9182312-9182432 ( 104) CATATATA 1 chr2L:15945122-15945242 ( 74) CATATATA 1 chrX:16155366-16155486 ( 55) TATATGTG 1 chr3L:6256192-6256312 ( 61) TATATGTG 1 chr3L:20765483-20765603 ( 104) TATATGTG 1 chr3L:13673764-13673884 ( 100) TATATGTG 1 chrX:12827479-12827599 ( 91) TATATGTC 1 chrX:16736319-16736439 ( 51) TATATGTC 1 chr2R:11728871-11728991 ( 3) TCTATATA 1 chr3L:6133685-6133805 ( 89) TCTATATA 1 chr2L:7944318-7944438 ( 19) TCTATATA 1 chr3R:15406532-15406652 ( 104) CATATATG 1 chr3R:23437500-23437620 ( 25) TAGATATA 1 chr2R:8055598-8055718 ( 83) TAGATATA 1 chr3R:22669955-22670075 ( 10) TACATATC 1 chr3L:15206746-15206866 ( 10) CATATATC 1 chr3R:20723645-20723765 ( 100) CATATATC 1 chr3L:20287185-20287305 ( 84) CATATATC 1 chr2L:8170739-8170859 ( 8) TATAGATA 1 chr3L:13312389-13312509 ( 66) TATAGATA 1 chrX:2909123-2909243 ( 67) CACATATA 1 chr3L:4328210-4328330 ( 67) TCTATATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATATATA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.0512 E= 3.1e-017 -1275 -99 -1275 170 181 -199 -1275 -1275 -1275 -99 -298 165 189 -1275 -1275 -1275 -1275 -1275 -298 184 157 -1275 -17 -1275 -1275 -1275 -1275 188 131 -67 -28 -1275 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATATATA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 3.1e-017 0.000000 0.115942 0.000000 0.884058 0.942029 0.057971 0.000000 0.000000 0.000000 0.115942 0.028986 0.855072 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.028986 0.971014 0.797101 0.000000 0.202899 0.000000 0.000000 0.000000 0.000000 1.000000 0.666667 0.144928 0.188406 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATATATA MEME-1 regular expression -------------------------------------------------------------------------------- TATAT[AG]TA -------------------------------------------------------------------------------- Time 7.45 secs. ******************************************************************************** ******************************************************************************** MOTIF KTTTTSGG MEME-2 width = 8 sites = 36 llr = 320 E-value = 1.2e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif KTTTTSGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::3:3:: probability G 51:::7aa matrix T 59a7a::: bits 2.1 ** 1.9 * * ** 1.7 * * ** 1.5 ** * ** Relative 1.3 ** **** Entropy 1.1 ******** (12.8 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTTTTGGG consensus T C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTTSGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21962138-21962258 39 1.51e-05 GGTGTCTGGC GTTTTGGG GGGTCTGGGT chr3L:14686392-14686512 98 1.51e-05 AAACTCACAA GTTTTGGG CAGCTGGAAG chr2L:19389099-19389219 33 1.51e-05 CGGGGGCACG GTTTTGGG GGGAAGAAGG chr3L:13763230-13763350 72 1.51e-05 CTTGTTGTTG GTTTTGGG GTCCGAGAAA chr2R:15153117-15153237 31 1.51e-05 GATGCGCAAA GTTTTGGG CCTAAGACTC chr3L:704800-704920 80 1.51e-05 TTTCAATTTT GTTTTGGG GCGCAGCCGT chr2L:15945122-15945242 107 1.51e-05 ttgggttggg gttttggg tttgga chrX:6034880-6035000 27 1.51e-05 TGCTCTCGGG GTTTTGGG CCGGGTCCAG chr2R:19907659-19907779 71 1.51e-05 GGGGCTTGGG GTTTTGGG GCCCGGTTGT chr2L:4060900-4061020 112 3.29e-05 TTCCAGTTCG TTTTTGGG G chr3L:7726829-7726949 82 3.29e-05 TCAGGTCTCT TTTTTGGG AAAGAACTTA chr3R:7377335-7377455 51 3.29e-05 ATAACAAGTA TTTTTGGG TAAACTCAAA chr3L:13776045-13776165 95 3.29e-05 TCTCCGCCAC TTTTTGGG CTCGGGTTTT chr3R:24215556-24215676 9 3.29e-05 TCAACCCT TTTTTGGG CCTAAGCACA chr2R:17166556-17166676 82 3.29e-05 ACTGGTTTTG TTTTTGGG GGTCGTCAGA chrX:9297786-9297906 91 3.29e-05 CTTATCAAAA TTTTTGGG AGTTATGATG chr3R:7008168-7008288 71 4.81e-05 CGTGGTTTTG GTTTTCGG TTGCCTGATT chrX:17205187-17205307 91 4.81e-05 ACGTGGACAG GTTTTCGG GTCGAAATCC chr3L:19563171-19563291 69 4.81e-05 CAAAGTCTCC GTTTTCGG CTCTTTTGTG chrX:20245603-20245723 77 6.09e-05 ATACGATCTA GTTCTGGG TTAACCAAGG chr3R:23576431-23576551 4 7.89e-05 ACA TTTTTCGG TCTTTCTTCC chr3L:4477994-4478114 106 7.89e-05 TATTTCTCTA TTTTTCGG CATAAGC chrX:12827479-12827599 40 7.89e-05 TTGGGTTTCT TTTTTCGG CGAATGTCTC chr2R:9655126-9655246 64 7.89e-05 CACAATTCGG TTTTTCGG TTTTCGTATT chr3L:4178868-4178988 106 9.41e-05 TTAATCTATC TTTCTGGG TTTATTT chr3R:25412687-25412807 112 9.41e-05 CGAGGGCGTT TTTCTGGG G chr3L:19246069-19246189 17 9.41e-05 tcgggctcgg tttctggg ttccgggact chr3R:4551744-4551864 86 9.41e-05 GCTAGTAGGC TTTCTGGG TCTCCCCTTG chr3L:1281028-1281148 1 1.07e-04 . GTTCTCGG TTCTCCCCAT chrX:19504286-19504406 111 1.07e-04 GACGATCGGG GTTCTCGG AA chr2R:15394260-15394380 49 1.07e-04 AAGGAAAAAG GTTCTCGG GTTGTTGAAG chr3L:15244296-15244416 95 1.22e-04 TAGAGGCCCG TTTCTCGG GTCGGGGTTT chr3R:14003984-14004104 112 1.22e-04 GGAAGTCACA TTTCTCGG C chrX:14591777-14591897 61 1.35e-04 gagttcgaCT GGTTTGGG CCTTTGGCCG chr2L:17627285-17627405 100 1.35e-04 CATGTCTTGG GGTTTGGG GTCTTGGATA chr2L:19686124-19686244 21 1.50e-04 GAGAATGTTT TGTTTGGG ATTTTGCCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTTSGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21962138-21962258 1.5e-05 38_[+2]_74 chr3L:14686392-14686512 1.5e-05 97_[+2]_15 chr2L:19389099-19389219 1.5e-05 32_[+2]_80 chr3L:13763230-13763350 1.5e-05 71_[+2]_41 chr2R:15153117-15153237 1.5e-05 30_[+2]_82 chr3L:704800-704920 1.5e-05 79_[+2]_33 chr2L:15945122-15945242 1.5e-05 106_[+2]_6 chrX:6034880-6035000 1.5e-05 26_[+2]_86 chr2R:19907659-19907779 1.5e-05 70_[+2]_42 chr2L:4060900-4061020 3.3e-05 111_[+2]_1 chr3L:7726829-7726949 3.3e-05 81_[+2]_31 chr3R:7377335-7377455 3.3e-05 50_[+2]_62 chr3L:13776045-13776165 3.3e-05 94_[+2]_18 chr3R:24215556-24215676 3.3e-05 8_[+2]_104 chr2R:17166556-17166676 3.3e-05 81_[+2]_31 chrX:9297786-9297906 3.3e-05 90_[+2]_22 chr3R:7008168-7008288 4.8e-05 70_[+2]_42 chrX:17205187-17205307 4.8e-05 90_[+2]_22 chr3L:19563171-19563291 4.8e-05 68_[+2]_44 chrX:20245603-20245723 6.1e-05 76_[+2]_36 chr3R:23576431-23576551 7.9e-05 3_[+2]_109 chr3L:4477994-4478114 7.9e-05 105_[+2]_7 chrX:12827479-12827599 7.9e-05 39_[+2]_73 chr2R:9655126-9655246 7.9e-05 63_[+2]_49 chr3L:4178868-4178988 9.4e-05 105_[+2]_7 chr3R:25412687-25412807 9.4e-05 111_[+2]_1 chr3L:19246069-19246189 9.4e-05 16_[+2]_96 chr3R:4551744-4551864 9.4e-05 85_[+2]_27 chr3L:1281028-1281148 0.00011 [+2]_112 chrX:19504286-19504406 0.00011 110_[+2]_2 chr2R:15394260-15394380 0.00011 48_[+2]_64 chr3L:15244296-15244416 0.00012 94_[+2]_18 chr3R:14003984-14004104 0.00012 111_[+2]_1 chrX:14591777-14591897 0.00014 60_[+2]_52 chr2L:17627285-17627405 0.00014 99_[+2]_13 chr2L:19686124-19686244 0.00015 20_[+2]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTTSGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KTTTTSGG width=8 seqs=36 chr3R:21962138-21962258 ( 39) GTTTTGGG 1 chr3L:14686392-14686512 ( 98) GTTTTGGG 1 chr2L:19389099-19389219 ( 33) GTTTTGGG 1 chr3L:13763230-13763350 ( 72) GTTTTGGG 1 chr2R:15153117-15153237 ( 31) GTTTTGGG 1 chr3L:704800-704920 ( 80) GTTTTGGG 1 chr2L:15945122-15945242 ( 107) GTTTTGGG 1 chrX:6034880-6035000 ( 27) GTTTTGGG 1 chr2R:19907659-19907779 ( 71) GTTTTGGG 1 chr2L:4060900-4061020 ( 112) TTTTTGGG 1 chr3L:7726829-7726949 ( 82) TTTTTGGG 1 chr3R:7377335-7377455 ( 51) TTTTTGGG 1 chr3L:13776045-13776165 ( 95) TTTTTGGG 1 chr3R:24215556-24215676 ( 9) TTTTTGGG 1 chr2R:17166556-17166676 ( 82) TTTTTGGG 1 chrX:9297786-9297906 ( 91) TTTTTGGG 1 chr3R:7008168-7008288 ( 71) GTTTTCGG 1 chrX:17205187-17205307 ( 91) GTTTTCGG 1 chr3L:19563171-19563291 ( 69) GTTTTCGG 1 chrX:20245603-20245723 ( 77) GTTCTGGG 1 chr3R:23576431-23576551 ( 4) TTTTTCGG 1 chr3L:4477994-4478114 ( 106) TTTTTCGG 1 chrX:12827479-12827599 ( 40) TTTTTCGG 1 chr2R:9655126-9655246 ( 64) TTTTTCGG 1 chr3L:4178868-4178988 ( 106) TTTCTGGG 1 chr3R:25412687-25412807 ( 112) TTTCTGGG 1 chr3L:19246069-19246189 ( 17) TTTCTGGG 1 chr3R:4551744-4551864 ( 86) TTTCTGGG 1 chr3L:1281028-1281148 ( 1) GTTCTCGG 1 chrX:19504286-19504406 ( 111) GTTCTCGG 1 chr2R:15394260-15394380 ( 49) GTTCTCGG 1 chr3L:15244296-15244416 ( 95) TTTCTCGG 1 chr3R:14003984-14004104 ( 112) TTTCTCGG 1 chrX:14591777-14591897 ( 61) GGTTTGGG 1 chr2L:17627285-17627405 ( 100) GGTTTGGG 1 chr2L:19686124-19686244 ( 21) TGTTTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTTSGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4069 E= 1.2e-004 -1181 -1181 113 88 -1181 -1181 -145 175 -1181 -1181 -1181 188 -1181 27 -1181 141 -1181 -1181 -1181 188 -1181 53 154 -1181 -1181 -1181 213 -1181 -1181 -1181 213 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTTSGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.2e-004 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.083333 0.916667 0.000000 0.000000 0.000000 1.000000 0.000000 0.277778 0.000000 0.722222 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KTTTTSGG MEME-2 regular expression -------------------------------------------------------------------------------- [GT]TT[TC]T[GC]GG -------------------------------------------------------------------------------- Time 13.61 secs. ******************************************************************************** ******************************************************************************** MOTIF RAATCGGA MEME-3 width = 8 sites = 58 llr = 460 E-value = 1.3e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAATCGGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4a8:::18 pos.-specific C ::::92:: probability G 6:::1891 matrix T ::2a:::1 bits 2.1 1.9 * 1.7 * ** * 1.5 * ** * Relative 1.3 * **** Entropy 1.1 ******* (11.4 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAATCGGA consensus A T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAATCGGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:20256421-20256541 99 1.47e-05 TGTCTGCAAT GAATCGGA GTCTTTATTC chrX:9298554-9298674 70 1.47e-05 ATCGGAATTG GAATCGGA ATCGATGCCT chr3R:22105186-22105306 60 1.47e-05 GCCCGACTTT GAATCGGA GTCGGGCTCC chr3R:23437500-23437620 80 1.47e-05 attgaaatcg gaatcgga ctgggtatct chr2L:7758752-7758872 64 1.47e-05 ttccgatccg gaatcgga atcggGGTTC chr2R:21763597-21763717 94 1.47e-05 atctggatct gaatcgga atcggtatcg chr3L:13312389-13312509 36 1.47e-05 GTTGGAATCG GAATCGGA ATCAGACCCG chr2R:23430882-23431002 93 1.47e-05 AATAAAACCT GAATCGGA GGTTCGATCA chrX:16736319-16736439 78 1.47e-05 AACCAAATCG GAATCGGA ATTGGAATTG chrX:14184201-14184321 66 1.47e-05 ttcagaatga gaatcgga atcaaaatca chr3L:14686392-14686512 67 3.19e-05 AGGCACACAA AAATCGGA AAAAAGAAGA chr2R:14673538-14673658 43 3.19e-05 CCGGAATGCG AAATCGGA GACCCCTATG chr2R:5686253-5686373 15 3.19e-05 AGAAATGTTA AAATCGGA AACCCATTTG chr2R:19185727-19185847 111 3.19e-05 ATCCGTCTCT AAATCGGA AT chr3R:20351701-20351821 33 3.19e-05 GTCATGGTCG AAATCGGA GGCCGGCTAA chr2R:9333617-9333737 67 3.19e-05 AGGAACGGCA AAATCGGA TGGGATATAG chr3L:6133685-6133805 73 3.19e-05 TACGATATGT AAATCGGA CATCTTCATC chr3L:18334723-18334843 73 4.68e-05 ttccgaatct gaatccga cttcccggac chr3R:22390248-22390368 73 4.68e-05 ATCTGCAAGA GAATCCGA GAACCAGTGG chr3R:14003984-14004104 94 4.68e-05 CGGGGTTGTG GAATCCGA GGAAGTCACA chr3R:22565801-22565921 60 4.68e-05 TCTTGTTCTC GAATCCGA ACCGATCTCC chr3L:9210393-9210513 77 6.16e-05 GTATTGTTCA GATTCGGA TTCTCAGATT chr3L:4477795-4477915 19 6.16e-05 TATATACAGC GATTCGGA AACTCCATTT chr2L:2797325-2797445 68 6.16e-05 TTCGGGTTCG GATTCGGA TCTATGGCAA chr2L:8627308-8627428 78 6.16e-05 ttccgattcg gattcgga ttcagattcT chr2L:9223405-9223525 53 6.16e-05 GGCCGATTCT GATTCGGA ATGGGTATCT chr2R:22198286-22198406 83 7.90e-05 ACCCGAATCC AAATCCGA ATGTTATACA chr3R:4678501-4678621 44 7.90e-05 CCAGTCGGAC AAATCCGA GCCCCCTGCG chrX:17205187-17205307 103 7.90e-05 TTTCGGGTCG AAATCCGA GATGAGCGAA chr2L:19389099-19389219 19 1.09e-04 AAAGAAATCA GAATCGGG GGCACGGTTT chr2R:11996688-11996808 62 1.09e-04 TAGGGGCGAG GAATCGGG TATAAATAAG chrX:17208004-17208124 25 1.24e-04 AACTCCCAAC GAATCGGT TGCGATTCAT chr3R:15120374-15120494 52 1.56e-04 CTTATCCCCG GAATCGAA AATACGTTAG chrX:8776929-8777049 25 1.56e-04 GATCATTGAC GAATGGGA CAATAACAAC chr3R:10574266-10574386 33 1.56e-04 ATTGGAAACG GAATCGAA TTCGAATCCA chr2R:16694299-16694419 77 1.56e-04 AAAGGCTCTC GAATGGGA CCCAACAATA chrX:1270322-1270442 48 1.70e-04 GTTTAGCCAA AAATCGGG GAACTGACGG chr3L:701937-702057 112 1.85e-04 TTCCTCGCTG GATTCCGA T chr3R:7008168-7008288 91 1.85e-04 GCCTGATTTC GATTCCGA GTCCGACTCG chrX:5337449-5337569 53 1.85e-04 TGGAGACCCC GATTCCGA ACCCGAATCG chr2L:3784420-3784540 71 2.03e-04 AATCGACGAA AAATCGGT GGATGGGGAT chr2R:6223017-6223137 11 2.03e-04 ATGAATAAGA AAATCGGT AAGCTGCTTT chr3R:8595921-8596041 46 2.03e-04 GTCGGCCCCA AAATCGGT TGTGTTTAAA chr3L:17490182-17490302 104 2.03e-04 GAAAATGAAG AAATCGGT TGAGAAGCG chrX:21126293-21126413 102 2.40e-04 GTTGGCTCAA AAATCGAA AATCAATATT chr3R:19551740-19551860 14 2.40e-04 TGATATAGCC AAATCGAA TTCCAGTTCC chr2L:8737001-8737121 111 2.40e-04 ATGCCGCTCG AAATGGGA TT chr2R:8737308-8737428 19 2.40e-04 ATTCATTAGG AAATGGGA ATTTGAAAAC chr3L:12093099-12093219 101 2.40e-04 TTCCGCATCG AAATCGAA ATCCACAAGT chrX:6094738-6094858 98 2.40e-04 aaatcaaatc aaatcgaa tcggcttgga chr2L:17041350-17041470 16 2.40e-04 TGTATGCGAC AAATGGGA GATAATGTAG chr3L:4117629-4117749 35 2.58e-04 GAGCCTAATG AATTCCGA TCGTTTCTTA chr2R:17512006-17512126 99 2.58e-04 ATTTCTGTAT AATTCCGA ATCACTGGAC chr3R:25411360-25411480 66 2.70e-04 TTGTGTCTGA GAATCCGG ATCCGCAACT chrX:2537601-2537721 66 2.83e-04 TCGCTGGATC GATTCGGG GTATACATAT chr3L:15421922-15422042 55 2.83e-04 GCTGTCGTCG GATTCGGG AGCtatatat chr3L:3998476-3998596 25 4.19e-04 gaaccCAATC GAATCGGC AACAGGGCCA chrX:7810059-7810179 49 5.07e-04 GACTTCGGGC GTATCGGA GATACAGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAATCGGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:20256421-20256541 1.5e-05 98_[+3]_14 chrX:9298554-9298674 1.5e-05 69_[+3]_43 chr3R:22105186-22105306 1.5e-05 59_[+3]_53 chr3R:23437500-23437620 1.5e-05 79_[+3]_33 chr2L:7758752-7758872 1.5e-05 63_[+3]_49 chr2R:21763597-21763717 1.5e-05 93_[+3]_19 chr3L:13312389-13312509 1.5e-05 35_[+3]_77 chr2R:23430882-23431002 1.5e-05 92_[+3]_20 chrX:16736319-16736439 1.5e-05 77_[+3]_35 chrX:14184201-14184321 1.5e-05 65_[+3]_47 chr3L:14686392-14686512 3.2e-05 66_[+3]_46 chr2R:14673538-14673658 3.2e-05 42_[+3]_70 chr2R:5686253-5686373 3.2e-05 14_[+3]_98 chr2R:19185727-19185847 3.2e-05 110_[+3]_2 chr3R:20351701-20351821 3.2e-05 32_[+3]_80 chr2R:9333617-9333737 3.2e-05 66_[+3]_46 chr3L:6133685-6133805 3.2e-05 72_[+3]_40 chr3L:18334723-18334843 4.7e-05 72_[+3]_40 chr3R:22390248-22390368 4.7e-05 72_[+3]_40 chr3R:14003984-14004104 4.7e-05 93_[+3]_19 chr3R:22565801-22565921 4.7e-05 59_[+3]_53 chr3L:9210393-9210513 6.2e-05 76_[+3]_36 chr3L:4477795-4477915 6.2e-05 18_[+3]_94 chr2L:2797325-2797445 6.2e-05 67_[+3]_45 chr2L:8627308-8627428 6.2e-05 77_[+3]_35 chr2L:9223405-9223525 6.2e-05 52_[+3]_60 chr2R:22198286-22198406 7.9e-05 82_[+3]_30 chr3R:4678501-4678621 7.9e-05 43_[+3]_69 chrX:17205187-17205307 7.9e-05 102_[+3]_10 chr2L:19389099-19389219 0.00011 18_[+3]_94 chr2R:11996688-11996808 0.00011 61_[+3]_51 chrX:17208004-17208124 0.00012 24_[+3]_88 chr3R:15120374-15120494 0.00016 51_[+3]_61 chrX:8776929-8777049 0.00016 24_[+3]_88 chr3R:10574266-10574386 0.00016 32_[+3]_80 chr2R:16694299-16694419 0.00016 76_[+3]_36 chrX:1270322-1270442 0.00017 47_[+3]_65 chr3L:701937-702057 0.00019 111_[+3]_1 chr3R:7008168-7008288 0.00019 90_[+3]_22 chrX:5337449-5337569 0.00019 52_[+3]_60 chr2L:3784420-3784540 0.0002 70_[+3]_42 chr2R:6223017-6223137 0.0002 10_[+3]_102 chr3R:8595921-8596041 0.0002 45_[+3]_67 chr3L:17490182-17490302 0.0002 103_[+3]_9 chrX:21126293-21126413 0.00024 101_[+3]_11 chr3R:19551740-19551860 0.00024 13_[+3]_99 chr2L:8737001-8737121 0.00024 110_[+3]_2 chr2R:8737308-8737428 0.00024 18_[+3]_94 chr3L:12093099-12093219 0.00024 100_[+3]_12 chrX:6094738-6094858 0.00024 97_[+3]_15 chr2L:17041350-17041470 0.00024 15_[+3]_97 chr3L:4117629-4117749 0.00026 34_[+3]_78 chr2R:17512006-17512126 0.00026 98_[+3]_14 chr3R:25411360-25411480 0.00027 65_[+3]_47 chrX:2537601-2537721 0.00028 65_[+3]_47 chr3L:15421922-15422042 0.00028 54_[+3]_58 chr3L:3998476-3998596 0.00042 24_[+3]_88 chrX:7810059-7810179 0.00051 48_[+3]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAATCGGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAATCGGA width=8 seqs=58 chr3R:20256421-20256541 ( 99) GAATCGGA 1 chrX:9298554-9298674 ( 70) GAATCGGA 1 chr3R:22105186-22105306 ( 60) GAATCGGA 1 chr3R:23437500-23437620 ( 80) GAATCGGA 1 chr2L:7758752-7758872 ( 64) GAATCGGA 1 chr2R:21763597-21763717 ( 94) GAATCGGA 1 chr3L:13312389-13312509 ( 36) GAATCGGA 1 chr2R:23430882-23431002 ( 93) GAATCGGA 1 chrX:16736319-16736439 ( 78) GAATCGGA 1 chrX:14184201-14184321 ( 66) GAATCGGA 1 chr3L:14686392-14686512 ( 67) AAATCGGA 1 chr2R:14673538-14673658 ( 43) AAATCGGA 1 chr2R:5686253-5686373 ( 15) AAATCGGA 1 chr2R:19185727-19185847 ( 111) AAATCGGA 1 chr3R:20351701-20351821 ( 33) AAATCGGA 1 chr2R:9333617-9333737 ( 67) AAATCGGA 1 chr3L:6133685-6133805 ( 73) AAATCGGA 1 chr3L:18334723-18334843 ( 73) GAATCCGA 1 chr3R:22390248-22390368 ( 73) GAATCCGA 1 chr3R:14003984-14004104 ( 94) GAATCCGA 1 chr3R:22565801-22565921 ( 60) GAATCCGA 1 chr3L:9210393-9210513 ( 77) GATTCGGA 1 chr3L:4477795-4477915 ( 19) GATTCGGA 1 chr2L:2797325-2797445 ( 68) GATTCGGA 1 chr2L:8627308-8627428 ( 78) GATTCGGA 1 chr2L:9223405-9223525 ( 53) GATTCGGA 1 chr2R:22198286-22198406 ( 83) AAATCCGA 1 chr3R:4678501-4678621 ( 44) AAATCCGA 1 chrX:17205187-17205307 ( 103) AAATCCGA 1 chr2L:19389099-19389219 ( 19) GAATCGGG 1 chr2R:11996688-11996808 ( 62) GAATCGGG 1 chrX:17208004-17208124 ( 25) GAATCGGT 1 chr3R:15120374-15120494 ( 52) GAATCGAA 1 chrX:8776929-8777049 ( 25) GAATGGGA 1 chr3R:10574266-10574386 ( 33) GAATCGAA 1 chr2R:16694299-16694419 ( 77) GAATGGGA 1 chrX:1270322-1270442 ( 48) AAATCGGG 1 chr3L:701937-702057 ( 112) GATTCCGA 1 chr3R:7008168-7008288 ( 91) GATTCCGA 1 chrX:5337449-5337569 ( 53) GATTCCGA 1 chr2L:3784420-3784540 ( 71) AAATCGGT 1 chr2R:6223017-6223137 ( 11) AAATCGGT 1 chr3R:8595921-8596041 ( 46) AAATCGGT 1 chr3L:17490182-17490302 ( 104) AAATCGGT 1 chrX:21126293-21126413 ( 102) AAATCGAA 1 chr3R:19551740-19551860 ( 14) AAATCGAA 1 chr2L:8737001-8737121 ( 111) AAATGGGA 1 chr2R:8737308-8737428 ( 19) AAATGGGA 1 chr3L:12093099-12093219 ( 101) AAATCGAA 1 chrX:6094738-6094858 ( 98) AAATCGAA 1 chr2L:17041350-17041470 ( 16) AAATGGGA 1 chr3L:4117629-4117749 ( 35) AATTCCGA 1 chr2R:17512006-17512126 ( 99) AATTCCGA 1 chr3R:25411360-25411480 ( 66) GAATCCGG 1 chrX:2537601-2537721 ( 66) GATTCGGG 1 chr3L:15421922-15422042 ( 55) GATTCGGG 1 chr3L:3998476-3998596 ( 25) GAATCGGC 1 chrX:7810059-7810179 ( 49) GTATCGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAATCGGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1759 E= 1.3e-004 62 -1250 136 -1250 187 -1250 -1250 -398 156 -1250 -1250 -39 -1250 -1250 -1250 188 -1250 199 -141 -1250 -1250 -4 176 -1250 -138 -1250 197 -1250 156 -374 -114 -166 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAATCGGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 1.3e-004 0.413793 0.000000 0.586207 0.000000 0.982759 0.000000 0.000000 0.017241 0.793103 0.000000 0.000000 0.206897 0.000000 0.000000 0.000000 1.000000 0.000000 0.913793 0.086207 0.000000 0.000000 0.224138 0.775862 0.000000 0.103448 0.000000 0.896552 0.000000 0.793103 0.017241 0.103448 0.086207 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAATCGGA MEME-3 regular expression -------------------------------------------------------------------------------- [GA]A[AT]TC[GC]GA -------------------------------------------------------------------------------- Time 19.73 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGAYTYB MEME-4 width = 8 sites = 40 llr = 329 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGAYTYB MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a:::: pos.-specific C aa::4342 probability G ::a::::4 matrix T ::::7764 bits 2.1 *** 1.9 **** 1.7 **** 1.5 **** Relative 1.3 **** Entropy 1.1 ******* (11.8 bits) 0.9 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGATTTG consensus CCCT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAYTYB MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:13279530-13279650 49 1.51e-05 TATCCGAgat ccgatttg ctccaatacg chr3R:29646618-29646738 102 1.51e-05 GTGCCCCCGA CCGATTTG ATAATGCCTT chr3R:19693622-19693742 112 1.51e-05 GCCTGGGCGC CCGATTTG G chr2R:22198286-22198406 31 1.51e-05 GCCCCGCCCT CCGATTTG CATAGCTTAC chr3R:22562641-22562761 13 1.51e-05 TCTCTGCCTT CCGatttg tttttgtatc chr2L:2428638-2428758 38 2.80e-05 ATTTTTGATA CCGATTCG GTATCAGATA chr2L:7758752-7758872 44 2.80e-05 gactcgaata ccgattcg gattccgatc chr2L:8627308-8627428 70 2.80e-05 gattccgatt ccgattcg gattcggatt chr2R:5919697-5919817 43 4.60e-05 GTATTTATAC CCGATTTT TTCCACATTG chr2L:7944318-7944438 44 4.60e-05 ATTCCGTCGC CCGATTTT CCCAACAATT chr2L:15524548-15524668 59 8.94e-05 CAAAAGCCCA CCGATTTC TGGAGGGGGG chr3L:19291594-19291714 16 8.94e-05 CCCACATACA CCGATTCT GGGTATATAT chr3R:4553686-4553806 32 8.94e-05 TTCTGCAACC CCGATTTC CGTTTTTTGA chr2L:9223405-9223525 45 8.94e-05 TAAAAAATGG CCGATTCT GATTCGGAAT chr2L:10684495-10684615 103 1.13e-04 ATAGATTCCC CCGATCTG GACAGCGCTC chr2R:22318831-22318951 54 1.13e-04 CCAGTTGGTA CCGATCTG CCCGTCTAAA chr3R:7008168-7008288 101 1.13e-04 GATTCCGAGT CCGACTCG ATGAGTTTCA chr3R:18703653-18703773 71 1.13e-04 GTACGTTGGC CCGACTCG ACTCGACTTG chrX:17206162-17206282 56 1.13e-04 TTTCGACCGG CCGActcg tcttgggttg chr3L:15206746-15206866 61 1.26e-04 CCCGCAGATC CCGATTCC CGGGCCGAAA chrX:14929502-14929622 90 1.26e-04 CGGTACCGGG CCGATTCC AGTACCGATT chrX:11516659-11516779 87 1.52e-04 ACACGACACC CCGACTTT GATTTGGCAA chr3R:14063283-14063403 112 1.52e-04 CAACAATCAA CCGACTTT C chrX:16926694-16926814 48 1.52e-04 TTAGACGGCG CCGACTTT GTTGTGATGA chr2R:23657664-23657784 57 1.52e-04 GCCAAAGCAA CCGActtt ggctttggct chr2L:1454670-1454790 43 1.52e-04 CGCAGCTGAG CCGACTTT TGCCACCCTT chr3R:22105186-22105306 52 1.52e-04 TCGTCCCGGC CCGACTTT GAATCGGAGT chr2L:4264686-4264806 46 1.52e-04 GACATCGACT CCGACTTT GACTTGGACc chr3R:23437500-23437620 17 1.52e-04 ctgtacgatt ccgatccg tagatatatt chrX:17227593-17227713 93 1.52e-04 CTGTAAGCTC CCGATCCG ACGACAGATC chr2L:434592-434712 102 1.52e-04 GCTCGCCGAT CCGATCCG ATCGTCATTC chrX:15212996-15213116 42 1.52e-04 AGCGACTATC CCGACTTT CTTCGACTTT chr3R:18643760-18643880 101 1.52e-04 ccaatcggat ccgatccg atccaatGTG chr2R:8055598-8055718 109 1.94e-04 TGCCGATCGC CCGATCTT GCCA chr2R:20159145-20159265 49 2.42e-04 CTACAGACTC CCGATCTC CCAGATCTGC chrX:12827479-12827599 80 2.42e-04 GACATATTTC CCGACTCC TGTTATATGT chr3R:22565801-22565921 69 2.42e-04 CGAATCCGAA CCGATCTC CAATCAATCA chr2R:23480122-23480242 51 2.62e-04 ATCCGGTACt ccgatccc ggccattcga chr2R:5686253-5686373 64 2.75e-04 TGAGGCCCGA CCGACCTT GACTAATAAA chrX:18181297-18181417 61 3.06e-04 TTTATGTGTC CCGACCCC CAATCACTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAYTYB MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:13279530-13279650 1.5e-05 48_[+4]_64 chr3R:29646618-29646738 1.5e-05 101_[+4]_11 chr3R:19693622-19693742 1.5e-05 111_[+4]_1 chr2R:22198286-22198406 1.5e-05 30_[+4]_82 chr3R:22562641-22562761 1.5e-05 12_[+4]_100 chr2L:2428638-2428758 2.8e-05 37_[+4]_75 chr2L:7758752-7758872 2.8e-05 43_[+4]_69 chr2L:8627308-8627428 2.8e-05 69_[+4]_43 chr2R:5919697-5919817 4.6e-05 42_[+4]_70 chr2L:7944318-7944438 4.6e-05 43_[+4]_69 chr2L:15524548-15524668 8.9e-05 58_[+4]_54 chr3L:19291594-19291714 8.9e-05 15_[+4]_97 chr3R:4553686-4553806 8.9e-05 31_[+4]_81 chr2L:9223405-9223525 8.9e-05 44_[+4]_68 chr2L:10684495-10684615 0.00011 102_[+4]_10 chr2R:22318831-22318951 0.00011 53_[+4]_59 chr3R:7008168-7008288 0.00011 100_[+4]_12 chr3R:18703653-18703773 0.00011 70_[+4]_42 chrX:17206162-17206282 0.00011 55_[+4]_57 chr3L:15206746-15206866 0.00013 60_[+4]_52 chrX:14929502-14929622 0.00013 89_[+4]_23 chrX:11516659-11516779 0.00015 86_[+4]_26 chr3R:14063283-14063403 0.00015 111_[+4]_1 chrX:16926694-16926814 0.00015 47_[+4]_65 chr2R:23657664-23657784 0.00015 56_[+4]_56 chr2L:1454670-1454790 0.00015 42_[+4]_70 chr3R:22105186-22105306 0.00015 51_[+4]_61 chr2L:4264686-4264806 0.00015 45_[+4]_67 chr3R:23437500-23437620 0.00015 16_[+4]_96 chrX:17227593-17227713 0.00015 92_[+4]_20 chr2L:434592-434712 0.00015 101_[+4]_11 chrX:15212996-15213116 0.00015 41_[+4]_71 chr3R:18643760-18643880 0.00015 100_[+4]_12 chr2R:8055598-8055718 0.00019 108_[+4]_4 chr2R:20159145-20159265 0.00024 48_[+4]_64 chrX:12827479-12827599 0.00024 79_[+4]_33 chr3R:22565801-22565921 0.00024 68_[+4]_44 chr2R:23480122-23480242 0.00026 50_[+4]_62 chr2R:5686253-5686373 0.00027 63_[+4]_49 chrX:18181297-18181417 0.00031 60_[+4]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAYTYB MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGAYTYB width=8 seqs=40 chr3R:13279530-13279650 ( 49) CCGATTTG 1 chr3R:29646618-29646738 ( 102) CCGATTTG 1 chr3R:19693622-19693742 ( 112) CCGATTTG 1 chr2R:22198286-22198406 ( 31) CCGATTTG 1 chr3R:22562641-22562761 ( 13) CCGATTTG 1 chr2L:2428638-2428758 ( 38) CCGATTCG 1 chr2L:7758752-7758872 ( 44) CCGATTCG 1 chr2L:8627308-8627428 ( 70) CCGATTCG 1 chr2R:5919697-5919817 ( 43) CCGATTTT 1 chr2L:7944318-7944438 ( 44) CCGATTTT 1 chr2L:15524548-15524668 ( 59) CCGATTTC 1 chr3L:19291594-19291714 ( 16) CCGATTCT 1 chr3R:4553686-4553806 ( 32) CCGATTTC 1 chr2L:9223405-9223525 ( 45) CCGATTCT 1 chr2L:10684495-10684615 ( 103) CCGATCTG 1 chr2R:22318831-22318951 ( 54) CCGATCTG 1 chr3R:7008168-7008288 ( 101) CCGACTCG 1 chr3R:18703653-18703773 ( 71) CCGACTCG 1 chrX:17206162-17206282 ( 56) CCGACTCG 1 chr3L:15206746-15206866 ( 61) CCGATTCC 1 chrX:14929502-14929622 ( 90) CCGATTCC 1 chrX:11516659-11516779 ( 87) CCGACTTT 1 chr3R:14063283-14063403 ( 112) CCGACTTT 1 chrX:16926694-16926814 ( 48) CCGACTTT 1 chr2R:23657664-23657784 ( 57) CCGACTTT 1 chr2L:1454670-1454790 ( 43) CCGACTTT 1 chr3R:22105186-22105306 ( 52) CCGACTTT 1 chr2L:4264686-4264806 ( 46) CCGACTTT 1 chr3R:23437500-23437620 ( 17) CCGATCCG 1 chrX:17227593-17227713 ( 93) CCGATCCG 1 chr2L:434592-434712 ( 102) CCGATCCG 1 chrX:15212996-15213116 ( 42) CCGACTTT 1 chr3R:18643760-18643880 ( 101) CCGATCCG 1 chr2R:8055598-8055718 ( 109) CCGATCTT 1 chr2R:20159145-20159265 ( 49) CCGATCTC 1 chrX:12827479-12827599 ( 80) CCGACTCC 1 chr3R:22565801-22565921 ( 69) CCGATCTC 1 chr2R:23480122-23480242 ( 51) CCGATCCC 1 chr2R:5686253-5686373 ( 64) CCGACCTT 1 chrX:18181297-18181417 ( 61) CCGACCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAYTYB MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9372 E= 1.1e+004 -1197 212 -1197 -1197 -1197 212 -1197 -1197 -1197 -1197 213 -1197 189 -1197 -1197 -1197 -1197 60 -1197 126 -1197 38 -1197 136 -1197 88 -1197 108 -1197 -4 90 36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAYTYB MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 1.1e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.350000 0.000000 0.650000 0.000000 0.300000 0.000000 0.700000 0.000000 0.425000 0.000000 0.575000 0.000000 0.225000 0.425000 0.350000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAYTYB MEME-4 regular expression -------------------------------------------------------------------------------- CCGA[TC][TC][TC][GTC] -------------------------------------------------------------------------------- Time 25.69 secs. ******************************************************************************** ******************************************************************************** MOTIF GATATAGC MEME-5 width = 8 sites = 10 llr = 104 E-value = 1.0e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GATATAGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :7:a:a:: pos.-specific C :3:::::a probability G a:::::a: matrix T ::a:a::: bits 2.1 * ** 1.9 * ****** 1.7 * ****** 1.5 * ****** Relative 1.3 * ****** Entropy 1.1 ******** (15.0 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GATATAGC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATATAGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:19551740-19551860 5 1.74e-05 GCCT GATATAGC CAAATCGAAT chr3L:20765483-20765603 12 1.74e-05 CATTCAAGTG GATATAGC GGAGGGTGTC chr3L:9182312-9182432 89 1.74e-05 TGCTCCTGta gatatagc ctatattcat chr3R:13279530-13279650 10 1.74e-05 CAAGCAAAA GATATAGC ATATGCGACC chr3R:28447570-28447690 110 1.74e-05 TGACGAGGAC GATATAGC CAT chrX:8865201-8865321 2 1.74e-05 A GATATAGC ATATATATAC chr2R:17512006-17512126 38 1.74e-05 CATCAAAACA GATATAGC ACATACTCGT chrX:16155366-16155486 29 3.24e-05 ACGGGGGAGG GCTATAGC CATGGCTATA chr2R:16694299-16694419 7 3.24e-05 GCGTAA GCTATAGC TCTGTGCTAT chr2L:7944318-7944438 78 3.24e-05 tgtagctgaa gctatagc tttgactata -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATATAGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:19551740-19551860 1.7e-05 4_[+5]_108 chr3L:20765483-20765603 1.7e-05 11_[+5]_101 chr3L:9182312-9182432 1.7e-05 88_[+5]_24 chr3R:13279530-13279650 1.7e-05 9_[+5]_103 chr3R:28447570-28447690 1.7e-05 109_[+5]_3 chrX:8865201-8865321 1.7e-05 1_[+5]_111 chr2R:17512006-17512126 1.7e-05 37_[+5]_75 chrX:16155366-16155486 3.2e-05 28_[+5]_84 chr2R:16694299-16694419 3.2e-05 6_[+5]_106 chr2L:7944318-7944438 3.2e-05 77_[+5]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATATAGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GATATAGC width=8 seqs=10 chr3R:19551740-19551860 ( 5) GATATAGC 1 chr3L:20765483-20765603 ( 12) GATATAGC 1 chr3L:9182312-9182432 ( 89) GATATAGC 1 chr3R:13279530-13279650 ( 10) GATATAGC 1 chr3R:28447570-28447690 ( 110) GATATAGC 1 chrX:8865201-8865321 ( 2) GATATAGC 1 chr2R:17512006-17512126 ( 38) GATATAGC 1 chrX:16155366-16155486 ( 29) GCTATAGC 1 chr2R:16694299-16694419 ( 7) GCTATAGC 1 chr2L:7944318-7944438 ( 78) GCTATAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATATAGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7151 E= 1.0e+005 -997 -997 213 -997 138 38 -997 -997 -997 -997 -997 188 189 -997 -997 -997 -997 -997 -997 188 189 -997 -997 -997 -997 -997 213 -997 -997 211 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATATAGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.0e+005 0.000000 0.000000 1.000000 0.000000 0.700000 0.300000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATATAGC MEME-5 regular expression -------------------------------------------------------------------------------- G[AC]TATAGC -------------------------------------------------------------------------------- Time 31.57 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:695655-695775 1.66e-01 120 chr2R:17512006-17512126 1.90e-03 37_[+5(1.74e-05)]_75 chrX:17208004-17208124 1.44e-01 120 chr3L:19563171-19563291 4.53e-03 17_[+1(7.75e-05)]_43_[+2(4.81e-05)]_\ 44 chr2L:17041350-17041470 7.42e-02 120 chr3R:22565801-22565921 2.71e-04 59_[+3(4.68e-05)]_53 chr2L:7944318-7944438 5.28e-04 43_[+4(4.60e-05)]_26_[+5(3.24e-05)]_\ 35 chrX:5337449-5337569 4.95e-02 120 chrX:6094738-6094858 1.20e-01 120 chrX:17205187-17205307 5.80e-04 30_[+1(7.75e-05)]_52_[+2(4.81e-05)]_\ 4_[+3(7.90e-05)]_10 chr3L:13673764-13673884 1.30e-02 120 chr3R:22562641-22562761 3.96e-03 12_[+4(1.51e-05)]_100 chr3R:22560365-22560485 1.23e-01 120 chrX:1270322-1270442 3.15e-02 120 chr3L:3397448-3397568 1.46e-01 120 chr3L:9027436-9027556 8.60e-01 120 chr3R:27740142-27740262 3.63e-01 120 chr2L:9223405-9223525 4.84e-03 44_[+4(8.94e-05)]_[+3(6.16e-05)]_60 chrX:14184201-14184321 3.58e-02 65_[+3(1.47e-05)]_47 chrX:16907814-16907934 4.19e-01 120 chr3L:6133685-6133805 1.42e-02 72_[+3(3.19e-05)]_40 chr2R:10081196-10081316 8.99e-01 120 chr3L:12093099-12093219 5.30e-03 52_[+1(2.87e-05)]_60 chr3R:24070104-24070224 3.32e-01 120 chrX:14261029-14261149 3.52e-02 75_[+1(2.87e-05)]_12_[+1(5.31e-05)]_\ 17 chr3R:4678501-4678621 4.22e-03 43_[+3(7.90e-05)]_14_[+1(2.87e-05)]_\ 47 chr2R:22198286-22198406 7.95e-05 30_[+4(1.51e-05)]_44_[+3(7.90e-05)]_\ 30 chr2L:53247-53367 1.84e-01 120 chr3R:25559456-25559576 2.39e-02 108_[+1(2.87e-05)]_4 chrX:8732518-8732638 2.02e-01 120 chr3R:15406532-15406652 1.37e-01 120 chr3R:18643760-18643880 1.86e-01 120 chr3R:14003984-14004104 1.53e-04 14_[+1(2.87e-05)]_[+1(2.87e-05)]_63_\ [+3(4.68e-05)]_19 chrX:16736319-16736439 1.26e-02 77_[+3(1.47e-05)]_35 chr3L:10496021-10496141 9.28e-01 120 chrX:17206162-17206282 5.10e-02 120 chr3R:26237635-26237755 2.57e-02 120 chrX:18197781-18197901 3.56e-01 120 chr2R:23430882-23431002 5.41e-02 92_[+3(1.47e-05)]_20 chr2R:16694299-16694419 9.52e-03 6_[+5(3.24e-05)]_106 chr3L:9283882-9284002 2.17e-02 120 chr3R:22669955-22670075 3.31e-01 120 chr3L:20287185-20287305 1.48e-01 120 chr3R:22390248-22390368 3.88e-02 72_[+3(4.68e-05)]_40 chr2R:11728871-11728991 1.59e-02 120 chr3R:18703653-18703773 5.31e-02 120 chr2R:8055598-8055718 3.83e-02 120 chr2R:9333617-9333737 1.25e-02 66_[+3(3.19e-05)]_46 chr2R:19907659-19907779 4.44e-03 14_[+1(7.75e-05)]_48_[+2(1.51e-05)]_\ 42 chrX:6034880-6035000 6.47e-03 26_[+2(1.51e-05)]_86 chr3L:13312389-13312509 1.78e-03 29_[+3(1.47e-05)]_83 chr2R:12808982-12809102 4.34e-01 120 chr2L:3877150-3877270 1.04e-01 [+1(2.87e-05)]_112 chr2R:8737308-8737428 9.91e-02 120 chr3L:5788962-5789082 5.44e-01 120 chr3R:27739410-27739530 5.09e-02 25_[+1(5.31e-05)]_87 chr2L:1560690-1560810 8.94e-01 120 chrX:15212996-15213116 3.11e-01 120 chr2R:21763597-21763717 2.35e-02 93_[+3(1.47e-05)]_10_[+3(3.19e-05)]_\ 1 chr3L:6811073-6811193 8.81e-03 98_[+1(2.87e-05)]_14 chr2L:17627285-17627405 4.83e-02 120 chr2L:434592-434712 6.41e-02 120 chrX:16719957-16720077 4.47e-01 120 chr2L:8627308-8627428 7.06e-04 69_[+4(2.80e-05)]_43 chr3R:7682404-7682524 2.20e-01 106_[+1(7.75e-05)]_6 chrX:8865201-8865321 1.06e-03 1_[+5(1.74e-05)]_1_[+1(2.87e-05)]_\ 102 chr2R:7072482-7072602 2.09e-01 120 chr3R:22975376-22975496 5.58e-01 120 chrX:9297786-9297906 3.18e-02 90_[+2(3.29e-05)]_22 chr3R:27741625-27741745 2.80e-01 120 chr3R:11475429-11475549 4.35e-02 120 chr2R:17685679-17685799 2.33e-01 120 chr3R:4553686-4553806 4.96e-02 31_[+4(8.94e-05)]_81 chr3R:20955992-20956112 2.12e-01 120 chr3L:20750508-20750628 3.12e-02 3_[+5(3.24e-05)]_12_[+5(3.24e-05)]_\ 89 chrX:17227593-17227713 3.66e-01 120 chr3R:4551744-4551864 2.04e-01 85_[+2(9.41e-05)]_27 chrX:17839658-17839778 5.20e-01 120 chr3R:7008168-7008288 1.81e-03 70_[+2(4.81e-05)]_42 chr3L:4570815-4570935 1.42e-02 30_[+1(2.87e-05)]_17_[+1(2.87e-05)]_\ [+1(2.87e-05)]_49 chr2L:7758752-7758872 9.54e-04 43_[+4(2.80e-05)]_12_[+3(1.47e-05)]_\ 49 chr3R:24388147-24388267 2.68e-02 6_[+1(2.87e-05)]_1_[+1(5.31e-05)]_\ 97 chr3R:20723645-20723765 2.25e-01 120 chr3R:15463981-15464101 6.82e-01 120 chr3L:3998476-3998596 1.34e-02 58_[+1(5.31e-05)]_[+1(2.87e-05)]_46 chr3R:28447570-28447690 5.60e-02 109_[+5(1.74e-05)]_3 chr3R:20567649-20567769 2.84e-01 120 chrX:7751671-7751791 2.51e-01 120 chr2R:9655126-9655246 3.18e-02 63_[+2(7.89e-05)]_49 chr3R:10574266-10574386 1.66e-01 120 chr2R:14764843-14764963 6.91e-01 120 chr3R:23437500-23437620 4.50e-04 61_[+3(1.47e-05)]_10_[+3(1.47e-05)]_\ 33 chr3L:5069449-5069569 4.74e-02 [+1(2.87e-05)]_112 chr3R:19693622-19693742 2.11e-02 111_[+4(1.51e-05)]_1 chr2L:4264686-4264806 3.83e-01 120 chrX:12827479-12827599 6.12e-04 39_[+2(7.89e-05)]_73 chr3L:5255624-5255744 3.19e-01 120 chr2R:17166556-17166676 2.52e-01 81_[+2(3.29e-05)]_31 chr3L:14651491-14651611 6.91e-01 120 chrX:14929502-14929622 1.50e-01 120 chr3R:29646618-29646738 1.59e-02 101_[+4(1.51e-05)]_11 chr3L:1590337-1590457 6.47e-01 120 chr2L:10096265-10096385 2.75e-01 120 chr2R:8404992-8405112 5.09e-01 120 chr3R:24215556-24215676 5.64e-03 8_[+2(3.29e-05)]_104 chr3R:20351701-20351821 1.11e-01 32_[+3(3.19e-05)]_80 chr3L:19246069-19246189 1.54e-01 16_[+2(9.41e-05)]_96 chr2R:19185727-19185847 3.67e-02 110_[+3(3.19e-05)]_2 chr3L:4585379-4585499 7.08e-01 120 chrX:360839-360959 9.84e-01 120 chrX:10580283-10580403 1.49e-01 120 chrX:3397906-3398026 7.75e-03 106_[+1(2.87e-05)]_6 chr3R:30347833-30347953 5.38e-01 120 chr3R:16602501-16602621 3.56e-02 11_[+5(3.24e-05)]_11_[+5(3.24e-05)]_\ 82 chr2L:2428638-2428758 1.32e-02 24_[+4(4.60e-05)]_5_[+4(2.80e-05)]_\ 75 chr3L:4328210-4328330 6.20e-02 120 chr2R:12914408-12914528 1.38e-01 120 chr3R:20572986-20573106 4.62e-01 120 chr4:852480-852600 5.28e-01 120 chr2L:15945122-15945242 1.82e-03 106_[+2(1.51e-05)]_6 chr3R:22105186-22105306 1.16e-02 59_[+3(1.47e-05)]_53 chr3L:17490182-17490302 2.59e-01 120 chr2L:19686124-19686244 4.37e-02 120 chr2L:3718468-3718588 7.48e-02 120 chr2L:1454670-1454790 6.05e-02 120 chr2L:2835631-2835751 8.29e-01 120 chr2R:15394260-15394380 3.41e-02 120 chrX:2909123-2909243 7.61e-02 35_[+5(6.49e-05)]_77 chr3L:15421922-15422042 2.81e-03 65_[+1(2.87e-05)]_2_[+1(2.87e-05)]_\ [+1(2.87e-05)]_29 chr3R:26670425-26670545 4.36e-01 120 chr3R:9617151-9617271 8.73e-01 120 chr3R:6310490-6310610 1.57e-01 120 chrX:16623687-16623807 3.70e-02 120 chr3R:8595921-8596041 2.23e-02 120 chr2L:11909002-11909122 6.68e-01 120 chr2R:7164937-7165057 7.27e-01 120 chr3R:25411360-25411480 2.46e-01 120 chr3R:13279530-13279650 5.10e-04 9_[+5(1.74e-05)]_31_[+4(1.51e-05)]_\ 64 chrX:5193911-5194031 9.22e-01 120 chr3L:703299-703419 9.58e-01 120 chr3L:20171661-20171781 9.49e-01 120 chr3R:20598038-20598158 2.62e-02 120 chr3L:704800-704920 1.32e-02 79_[+2(1.51e-05)]_33 chr3L:12237633-12237753 3.56e-02 83_[+1(5.31e-05)]_29 chr2L:4900033-4900153 1.98e-02 120 chr2R:14266784-14266904 1.42e-01 94_[+1(5.31e-05)]_18 chrX:20245357-20245477 1.01e-01 120 chr2R:15153117-15153237 7.29e-02 30_[+2(1.51e-05)]_82 chr3L:4359180-4359300 5.90e-01 120 chr3L:9182312-9182432 1.38e-03 88_[+5(1.74e-05)]_24 chr2R:22318831-22318951 1.67e-01 120 chr2L:36165-36285 4.92e-01 120 chr3L:19291594-19291714 1.23e-03 15_[+4(8.94e-05)]_3_[+1(2.87e-05)]_\ 86 chr3R:7829561-7829681 6.39e-01 120 chr3L:20765483-20765603 5.16e-03 11_[+5(1.74e-05)]_101 chrX:8776929-8777049 1.24e-02 70_[+1(2.87e-05)]_42 chr3L:701937-702057 6.19e-02 120 chr2R:20159145-20159265 1.20e-01 120 chr2L:2797325-2797445 4.85e-02 67_[+3(6.16e-05)]_45 chr2L:4019016-4019136 9.72e-02 120 chr3L:703533-703653 6.09e-01 120 chr3R:30520235-30520355 3.99e-01 120 chr3L:4477795-4477915 1.71e-02 18_[+3(6.16e-05)]_94 chr2R:23657664-23657784 3.90e-02 120 chr3R:22045342-22045462 3.48e-01 120 chrX:9298554-9298674 3.54e-02 69_[+3(1.47e-05)]_43 chr3R:25412687-25412807 1.23e-01 111_[+2(9.41e-05)]_1 chrX:18181297-18181417 1.69e-01 120 chr3R:20985076-20985196 2.06e-01 120 chr3L:18265682-18265802 7.30e-02 120 chr2R:11996688-11996808 1.06e-01 120 chr3L:18018663-18018783 8.13e-01 120 chrX:16926694-16926814 2.91e-01 120 chr3L:13776045-13776165 3.95e-03 64_[+1(7.75e-05)]_22_[+2(3.29e-05)]_\ 18 chr3L:4178868-4178988 3.42e-01 105_[+2(9.41e-05)]_7 chr2L:9128487-9128607 2.08e-01 39_[+1(7.75e-05)]_73 chr3R:14063283-14063403 2.04e-01 120 chr3L:19778657-19778777 2.72e-01 120 chr3L:15244296-15244416 1.91e-01 120 chr3L:13763230-13763350 3.76e-03 71_[+2(1.51e-05)]_33_[+1(5.31e-05)] chrX:17225269-17225389 2.08e-01 120 chrX:14853412-14853532 8.58e-01 120 chr3L:18334723-18334843 4.40e-03 72_[+3(4.68e-05)]_40 chr3L:6256192-6256312 1.87e-02 120 chr2L:4571467-4571587 2.87e-02 73_[+1(7.75e-05)]_39 chr3R:8070813-8070933 9.17e-01 120 chrX:2537601-2537721 2.79e-03 80_[+1(2.87e-05)]_32 chr2L:19389099-19389219 2.21e-03 32_[+2(1.51e-05)]_80 chr2L:11892798-11892918 8.94e-01 120 chrX:15973514-15973634 8.15e-01 120 chrX:7810059-7810179 4.94e-01 120 chr3L:22468636-22468756 1.84e-01 120 chr3L:11718132-11718252 2.99e-02 13_[+1(2.87e-05)]_99 chr2L:15524548-15524668 5.47e-02 58_[+4(8.94e-05)]_54 chr2R:5686253-5686373 1.04e-02 14_[+3(3.19e-05)]_98 chrX:4514769-4514889 2.18e-02 62_[+1(2.87e-05)]_[+1(2.87e-05)]_42 chr2R:14673538-14673658 2.28e-01 42_[+3(3.19e-05)]_70 chr2L:20904481-20904601 1.33e-01 120 chrX:14858690-14858810 3.38e-01 120 chr3L:13147604-13147724 8.43e-01 120 chr3L:4001639-4001759 8.88e-01 120 chr3L:14686392-14686512 7.67e-05 31_[+1(5.31e-05)]_27_[+3(3.19e-05)]_\ 23_[+2(1.51e-05)]_15 chrX:19504286-19504406 2.35e-01 120 chr3L:15206746-15206866 1.15e-02 120 chr2R:5919697-5919817 5.77e-03 42_[+4(4.60e-05)]_70 chr3R:7377335-7377455 2.34e-01 50_[+2(3.29e-05)]_62 chr2L:8170739-8170859 1.89e-01 120 chr2L:17236201-17236321 7.40e-01 120 chr3R:20256421-20256541 8.80e-02 98_[+3(1.47e-05)]_14 chr3L:2982379-2982499 2.52e-01 120 chr3L:7726829-7726949 1.13e-02 81_[+2(3.29e-05)]_31 chr3L:9210393-9210513 4.07e-02 76_[+3(6.16e-05)]_36 chr2L:10684495-10684615 3.15e-02 120 chr2L:8737001-8737121 5.45e-03 120 chr3L:1281028-1281148 1.67e-01 120 chr2L:4060900-4061020 4.43e-02 111_[+2(3.29e-05)]_1 chrX:16155366-16155486 1.92e-02 28_[+5(3.24e-05)]_84 chr3L:4117629-4117749 7.81e-02 120 chrX:11516659-11516779 6.34e-03 120 chrX:20245603-20245723 1.11e-01 76_[+2(6.09e-05)]_36 chr3R:15120374-15120494 3.20e-01 120 chr2R:22319558-22319678 6.50e-01 120 chr3R:19551740-19551860 9.83e-03 4_[+5(1.74e-05)]_108 chr2L:5227364-5227484 5.00e-01 120 chr2R:10866526-10866646 8.43e-01 120 chr3R:9127849-9127969 2.81e-02 11_[+1(2.87e-05)]_101 chr3L:4477994-4478114 5.91e-02 105_[+2(7.89e-05)]_7 chr3L:11706412-11706532 2.91e-01 120 chr2L:21069833-21069953 1.54e-01 120 chr4:275890-276010 1.22e-01 120 chr2L:146624-146744 8.95e-02 120 chr3L:19558813-19558933 3.24e-01 120 chrX:22733597-22733717 8.15e-01 120 chr3R:23576431-23576551 1.09e-03 3_[+2(7.89e-05)]_109 chr2R:6223017-6223137 3.35e-02 120 chr2R:19352870-19352990 1.02e-01 120 chrX:21126293-21126413 6.50e-02 120 chr2R:23480122-23480242 7.54e-02 120 chr2L:3784420-3784540 1.84e-01 120 chr2L:8889678-8889798 9.78e-01 120 chrX:14591777-14591897 2.20e-02 120 chr2L:21807013-21807133 3.85e-01 120 chr2R:8696292-8696412 5.17e-01 120 chr2L:77038-77158 6.15e-01 120 chrX:14588735-14588855 5.35e-02 46_[+1(7.75e-05)]_66 chr2L:17758764-17758884 1.15e-01 9_[+1(2.87e-05)]_103 chr3R:14695164-14695284 1.69e-01 120 chr2R:23664326-23664446 3.29e-01 44_[+1(5.31e-05)]_68 chrX:2254714-2254834 7.80e-01 120 chr3R:21962138-21962258 5.12e-04 16_[+1(5.31e-05)]_14_[+2(1.51e-05)]_\ 74 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************