******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG13775.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:22874585-22874705 1.0000 120 chr2L:14587221-14587341 1.0000 120 chr3R:29933177-29933297 1.0000 120 chr3R:10647310-10647430 1.0000 120 chr3R:4284539-4284659 1.0000 120 chr3L:15583753-15583873 1.0000 120 chr3L:19058963-19059083 1.0000 120 chrX:17712032-17712152 1.0000 120 chrX:2608609-2608729 1.0000 120 chrX:13089514-13089634 1.0000 120 chrX:16216623-16216743 1.0000 120 chrX:19578348-19578468 1.0000 120 chr3L:17759211-17759331 1.0000 120 chr3L:5984201-5984321 1.0000 120 chr2R:9293464-9293584 1.0000 120 chr2R:25012047-25012167 1.0000 120 chrX:19552683-19552803 1.0000 120 chrX:7102060-7102180 1.0000 120 chr2L:12083413-12083533 1.0000 120 chr3L:17562364-17562484 1.0000 120 chr2L:6960273-6960393 1.0000 120 chr3R:7304599-7304719 1.0000 120 chrX:8724973-8725093 1.0000 120 chrX:4234585-4234705 1.0000 120 chr3R:8134727-8134847 1.0000 120 chrX:8211233-8211353 1.0000 120 chr3L:9471668-9471788 1.0000 120 chrX:6642141-6642261 1.0000 120 chr3R:4885897-4886017 1.0000 120 chr3R:31932499-31932619 1.0000 120 chr2L:6956864-6956984 1.0000 120 chr3L:13925148-13925268 1.0000 120 chr2L:9763285-9763405 1.0000 120 chr3L:19871838-19871958 1.0000 120 chrX:1495313-1495433 1.0000 120 chr2R:13623001-13623121 1.0000 120 chr3L:12681295-12681415 1.0000 120 chr3L:19062461-19062581 1.0000 120 chr3L:5937527-5937647 1.0000 120 chr3R:29935835-29935955 1.0000 120 chr3R:8818497-8818617 1.0000 120 chr2L:5372090-5372210 1.0000 120 chrX:21018002-21018122 1.0000 120 chr2R:17851201-17851321 1.0000 120 chrX:8770907-8771027 1.0000 120 chr2R:20957428-20957548 1.0000 120 chr2L:21681457-21681577 1.0000 120 chr3L:3022916-3023036 1.0000 120 chr3L:22199904-22200024 1.0000 120 chr3L:391522-391642 1.0000 120 chr2L:7821679-7821799 1.0000 120 chr3R:6646955-6647075 1.0000 120 chrX:17398105-17398225 1.0000 120 chr3L:20752967-20753087 1.0000 120 chr2L:4730983-4731103 1.0000 120 chr3L:6792567-6792687 1.0000 120 chrX:7102293-7102413 1.0000 120 chr2L:7388124-7388244 1.0000 120 chr2R:14503853-14503973 1.0000 120 chr2L:9279417-9279537 1.0000 120 chrX:13089713-13089833 1.0000 120 chrX:8211441-8211561 1.0000 120 chr2L:13836070-13836190 1.0000 120 chr3R:4311269-4311389 1.0000 120 chrX:5329393-5329513 1.0000 120 chr2L:15272082-15272202 1.0000 120 chr3R:11492049-11492169 1.0000 120 chr3L:3983537-3983657 1.0000 120 chr3R:10626171-10626291 1.0000 120 chrX:15475554-15475674 1.0000 120 chr3R:16827233-16827353 1.0000 120 chrX:14234210-14234330 1.0000 120 chr3L:6969128-6969248 1.0000 120 chr2L:20592734-20592854 1.0000 120 chrX:5966035-5966155 1.0000 120 chr2R:15322278-15322398 1.0000 120 chr2L:16271151-16271271 1.0000 120 chr3R:7606929-7607049 1.0000 120 chrX:5611796-5611916 1.0000 120 chrX:8419771-8419891 1.0000 120 chr2L:13783720-13783840 1.0000 120 chr3R:21134105-21134225 1.0000 120 chr3R:24318581-24318701 1.0000 120 chr3L:3449802-3449922 1.0000 120 chr2R:11964728-11964848 1.0000 120 chrX:7968410-7968530 1.0000 120 chr3R:6657657-6657777 1.0000 120 chr3R:19643558-19643678 1.0000 120 chr2R:10123557-10123677 1.0000 120 chr3R:4400138-4400258 1.0000 120 chr2R:20668036-20668156 1.0000 120 chr3L:10847907-10848027 1.0000 120 chr3R:5660173-5660293 1.0000 120 chrX:7968610-7968730 1.0000 120 chr3L:11278760-11278880 1.0000 120 chrX:17712231-17712351 1.0000 120 chrX:14247419-14247539 1.0000 120 chr3R:27274641-27274761 1.0000 120 chrX:7000946-7001066 1.0000 120 chrX:3396961-3397081 1.0000 120 chr3L:16602819-16602939 1.0000 120 chrX:17740876-17740996 1.0000 120 chrX:19557044-19557164 1.0000 120 chr2R:22420674-22420794 1.0000 120 chr2R:11970353-11970473 1.0000 120 chr3L:19446749-19446869 1.0000 120 chr3L:6969331-6969451 1.0000 120 chr2R:25012250-25012370 1.0000 120 chr2L:6967709-6967829 1.0000 120 chr2R:7972326-7972446 1.0000 120 chrX:3367410-3367530 1.0000 120 chr3R:13799738-13799858 1.0000 120 chr3R:17394806-17394926 1.0000 120 chr3L:13964997-13965117 1.0000 120 chr3L:7510877-7510997 1.0000 120 chr2R:13015257-13015377 1.0000 120 chr3L:4254308-4254428 1.0000 120 chr3R:17540259-17540379 1.0000 120 chr2R:5122263-5122383 1.0000 120 chrX:7323810-7323930 1.0000 120 chr3R:29772298-29772418 1.0000 120 chr3R:27938068-27938188 1.0000 120 chr3R:25123351-25123471 1.0000 120 chrX:7104611-7104731 1.0000 120 chr2L:3779216-3779336 1.0000 120 chr2R:8907102-8907222 1.0000 120 chr3L:14978145-14978265 1.0000 120 chr3L:16129369-16129489 1.0000 120 chr3R:31704663-31704783 1.0000 120 chr2L:6967973-6968093 1.0000 120 chr3R:10641365-10641485 1.0000 120 chr3L:21598349-21598469 1.0000 120 chr3R:18366408-18366528 1.0000 120 chr3R:19875728-19875848 1.0000 120 chrX:18525062-18525182 1.0000 120 chr2R:22911769-22911889 1.0000 120 chr2R:12991304-12991424 1.0000 120 chr2R:5128315-5128435 1.0000 120 chr2R:14645097-14645217 1.0000 120 chr3L:13929266-13929386 1.0000 120 chr3L:6743432-6743552 1.0000 120 chr2R:13224779-13224899 1.0000 120 chr2L:3805362-3805482 1.0000 120 chr3R:27988913-27989033 1.0000 120 chr3L:11822433-11822553 1.0000 120 chrX:16275897-16276017 1.0000 120 chr3L:19062665-19062785 1.0000 120 chr2L:8415526-8415646 1.0000 120 chr3L:6752853-6752973 1.0000 120 chr3R:24817185-24817305 1.0000 120 chr2R:17789360-17789480 1.0000 120 chr3R:25184104-25184224 1.0000 120 chr2L:19285659-19285779 1.0000 120 chr2R:21662448-21662568 1.0000 120 chrX:2011736-2011856 1.0000 120 chr3R:21594536-21594656 1.0000 120 chr2L:16743131-16743251 1.0000 120 chr3R:9938578-9938698 1.0000 120 chr3L:11336532-11336652 1.0000 120 chr3L:19636907-19637027 1.0000 120 chr3L:11429882-11430002 1.0000 120 chr2R:9109687-9109807 1.0000 120 chr3R:14308826-14308946 1.0000 120 chr2R:12173467-12173587 1.0000 120 chr2R:16178603-16178723 1.0000 120 chr3R:5413161-5413281 1.0000 120 chr2R:9087711-9087831 1.0000 120 chrX:457883-458003 1.0000 120 chr2L:13203490-13203610 1.0000 120 chrX:12595864-12595984 1.0000 120 chr3L:5857072-5857192 1.0000 120 chr3R:21187072-21187192 1.0000 120 chr3R:29772502-29772622 1.0000 120 chr3R:5636891-5637011 1.0000 120 chr3L:9367008-9367128 1.0000 120 chr3R:16209084-16209204 1.0000 120 chr3L:6059200-6059320 1.0000 120 chr3L:11291584-11291704 1.0000 120 chr2R:22886393-22886513 1.0000 120 chr2L:11417613-11417733 1.0000 120 chr3L:15321080-15321200 1.0000 120 chr2L:4847585-4847705 1.0000 120 chr2L:14441059-14441179 1.0000 120 chr3R:17718488-17718608 1.0000 120 chr2R:12174548-12174668 1.0000 120 chr3R:23300757-23300877 1.0000 120 chr3L:21047108-21047228 1.0000 120 chr3R:23293558-23293678 1.0000 120 chr3L:18349444-18349564 1.0000 120 chr3L:11074635-11074755 1.0000 120 chr2R:21323665-21323785 1.0000 120 chr3L:6981953-6982073 1.0000 120 chrX:7901497-7901617 1.0000 120 chr2R:20327042-20327162 1.0000 120 chr3R:5861571-5861691 1.0000 120 chr2L:12542130-12542250 1.0000 120 chr3L:17016339-17016459 1.0000 120 chr3L:4262485-4262605 1.0000 120 chr3R:18393567-18393687 1.0000 120 chrX:2136491-2136611 1.0000 120 chr2R:24174678-24174798 1.0000 120 chr2L:11338369-11338489 1.0000 120 chr3L:6743232-6743352 1.0000 120 chr2L:9494848-9494968 1.0000 120 chr2L:3477306-3477426 1.0000 120 chrX:13756999-13757119 1.0000 120 chrX:18899903-18900023 1.0000 120 chr3R:26052323-26052443 1.0000 120 chr2R:15034833-15034953 1.0000 120 chr3R:15250625-15250745 1.0000 120 chr3L:17016136-17016256 1.0000 120 chr3L:3855335-3855455 1.0000 120 chrX:12611758-12611878 1.0000 120 chr2R:22690295-22690415 1.0000 120 chr3L:19898915-19899035 1.0000 120 chr3R:21856595-21856715 1.0000 120 chrX:16320441-16320561 1.0000 120 chr2L:3776009-3776129 1.0000 120 chr2L:15061463-15061583 1.0000 120 chr2L:11189212-11189332 1.0000 120 chr2L:15248776-15248896 1.0000 120 chr2L:20120641-20120761 1.0000 120 chr2R:9544890-9545010 1.0000 120 chrX:15890256-15890376 1.0000 120 chr3R:12997862-12997982 1.0000 120 chrX:7728392-7728512 1.0000 120 chr3L:12803831-12803951 1.0000 120 chrX:11570410-11570530 1.0000 120 chr2R:15201388-15201508 1.0000 120 chr2R:15835683-15835803 1.0000 120 chr3R:18311134-18311254 1.0000 120 chr3R:8349626-8349746 1.0000 120 chr2L:18305174-18305294 1.0000 120 chr3L:14613793-14613913 1.0000 120 chr3L:15787501-15787621 1.0000 120 chr2L:16703843-16703963 1.0000 120 chr3L:10661067-10661187 1.0000 120 chrX:13258809-13258929 1.0000 120 chr3L:19834272-19834392 1.0000 120 chrX:21322796-21322916 1.0000 120 chr3R:12630488-12630608 1.0000 120 chr3R:19836742-19836862 1.0000 120 chr3L:16061012-16061132 1.0000 120 chr2L:11528392-11528512 1.0000 120 chrX:19865795-19865915 1.0000 120 chr2L:1462151-1462271 1.0000 120 chr3L:3543044-3543164 1.0000 120 chr2L:13833129-13833249 1.0000 120 chr2R:11204344-11204464 1.0000 120 chr2L:14359025-14359145 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG13775/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG13775.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.313 C 0.186 G 0.189 T 0.313 Background letter frequencies (from file dataset with add-one prior applied): A 0.313 C 0.186 G 0.189 T 0.313 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CGSATSCG MEME-1 width = 8 sites = 72 llr = 671 E-value = 1.6e-060 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGSATSCG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :2:a:::: pos.-specific C a:5:158: probability G :85::5:a matrix T ::::9:2: bits 2.4 * 2.2 * * 1.9 * * 1.7 ** ** Relative 1.5 **** *** Entropy 1.2 ******** (13.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCATCCG consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSATSCG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17740876-17740996 56 4.19e-06 ACATGGCATC CGCATCCG CAATTGGAGC chr3R:7606929-7607049 80 4.19e-06 GCGGAgcatc cgcatccg cactctcatc chr2L:20592734-20592854 89 4.19e-06 catccgcagg cgcatccg catccgcgtc chr2L:13836070-13836190 33 4.19e-06 CTCTCGCATC CGCATCCG CAGCAGGTCC chr2L:9279417-9279537 71 4.19e-06 catccacatc cgcatccg cattcgcatt chr2L:4730983-4731103 83 4.19e-06 caccgacatc cgcaTCCG CCCCGTGGCC chr3L:20752967-20753087 55 4.19e-06 cagccatgtc cgcatccg cattcgaatc chrX:17398105-17398225 55 4.19e-06 catccgccca cgcatccg cacacacatc chr3L:22199904-22200024 71 4.19e-06 catccgcatc cgcatccg caGGCGAGTG chr2L:5372090-5372210 36 4.19e-06 CAGTTCACTC CGCATCCG CAATAAATCC chr3L:19062461-19062581 39 4.19e-06 cttctacatc cgcatccg cattcgTGTC chr3L:13925148-13925268 32 4.19e-06 AGCCACGCtc cgcatccg cgacccccaa chr3R:4885897-4886017 35 4.19e-06 catcggcatc cgcatccg cgtccgcTTA chr3L:9471668-9471788 103 4.19e-06 catggtcatc cgcatccg caacagcatc chrX:8211233-8211353 45 4.19e-06 catccgcatt cgcatccg cattcgtatc chrX:4234585-4234705 84 4.19e-06 catccacatc cgcatccg catccgcatc chrX:8724973-8725093 54 4.19e-06 catccgcatc cgcatccg aatcggaatc chrX:19552683-19552803 39 4.19e-06 ATtccgcatt cgcatccg catccgcatc chr2R:9293464-9293584 80 4.19e-06 CACTCGCGTC CGCATCCG CTAGAGAAAC chr3L:19058963-19059083 64 4.19e-06 GATCCGCAGA CGCATCCG CGGCAGCATC chr3R:4284539-4284659 60 4.19e-06 catccgcatc cgcatccg catccccgtc chr3R:10647310-10647430 59 4.19e-06 catccgcaac cgcatccg cagctgcagc chr3L:12681295-12681415 36 1.27e-05 gatcgggatg cggatccg gatgcggatg chrX:7102060-7102180 98 1.27e-05 cgctgacgtg cggatccg gggcggaaga chr3R:19836742-19836862 26 1.70e-05 GAAAACGCTG CGGATGCG GATAAGCGGA chrX:5611796-5611916 94 1.70e-05 gaGTGCgatg cggatgcg gatgttgagg chr3R:16827233-16827353 86 1.70e-05 gaggcggacg cggatgcg gacccggGAG chr3R:11492049-11492169 20 1.70e-05 GTGACCGTGC cggatgcg gatgtggatg chr2R:14503853-14503973 112 1.70e-05 TCCGATGTAT CGGATGCG A chr3L:391522-391642 41 1.70e-05 GATGGTGgtg cggatgcg agtgcggatg chrX:21018002-21018122 87 1.70e-05 gacgcggatg cggatgcg gaAGACAAGA chr3R:8818497-8818617 55 1.70e-05 GTtgctggtg cggatgcg gatacggatg chr3L:5937527-5937647 85 1.70e-05 gatgcggatg cggatgcg agtggctatg chr3L:19871838-19871958 65 1.70e-05 CTGGAATGCG CGGATGCG GATGTCGCTG chr3R:31932499-31932619 77 1.70e-05 gatgtggatg cggatgcg tggaCGCCGG chrX:6642141-6642261 45 1.70e-05 gaggcggatg cggatgcg gatgtggctg chr3R:7304599-7304719 72 1.70e-05 gatgcggatg cggatgcg gatgtggaca chr3L:17562364-17562484 42 1.70e-05 gatgtgagtg cggatgcg gaCCGTTCAG chr2L:12083413-12083533 69 1.70e-05 gatgtgcgtg cggatgcg gcgcatgggg chr3L:17759211-17759331 44 1.70e-05 CTGACAAata cggatgcg gatgtagaag chrX:16216623-16216743 10 1.70e-05 GCGAATATG CGGATGCG AATATGTGAA chrX:13089514-13089634 91 1.70e-05 GATGTGGCTG CGGATGCG GATGTCGCCA chrX:2608609-2608729 1 1.70e-05 . cggatgcg gttgcggatg chrX:17712032-17712152 19 1.70e-05 GCCCTACCGG Cggatgcg gatgtggaag chr3L:21598349-21598469 63 2.41e-05 cgCGAGCATC CGCATCTG GCAGTGTGGC chr2R:11964728-11964848 41 2.41e-05 CAGCCACATC CGCATCTG CATCCGCACT chrX:19557044-19557164 55 3.82e-05 tatccgcaca cacatccg catccATATA chr3L:3022916-3023036 85 3.82e-05 CATCCGCGCC CACATCCG CACATCCGCA chrX:8770907-8771027 47 3.82e-05 catcctcatc cacatccg catccacatc chr2R:17851201-17851321 111 3.82e-05 CCGCTGCACG CACATCCG CA chr2L:6956864-6956984 58 3.82e-05 TGCGGATGTC CACATCCG CCTCTACATC chr3L:5984201-5984321 107 3.82e-05 CATCCGCATG CACATCCG CGTCCA chr3L:15583753-15583873 104 3.82e-05 catccgcatc cacatccg cgtccacat chr3L:4262485-4262605 50 7.17e-05 AACCAGAAGG CGGATGTG AAAATGTAAA chr3R:19875728-19875848 26 7.17e-05 TATTCGCACT CGCACGCG ATTGTGCCTG chr2R:20668036-20668156 91 7.17e-05 GAGTTGTGCG CGGATGTG TTTGTTGTGT chrX:8419771-8419891 44 7.17e-05 ACATGTTGCG CGGATGTG TGGCAGCACT chr2R:20957428-20957548 51 7.17e-05 GATGAGAATG CGGATGTG AGGATGTGAG chr2R:25012047-25012167 63 7.17e-05 GGTTAATGCG CGGATGTG CGGATACTTT chr2L:14587221-14587341 76 7.17e-05 gatgggagcg cggatgtg tgcgcggatg chr3R:14308826-14308946 40 8.65e-05 CGAAGGCCAC CGCAGCCG TTGCTCGGTA chr3R:8134727-8134847 62 9.67e-05 AACATCCGCA CGCCTGCG GAGCATCCGC chrX:19578348-19578468 18 1.02e-04 TCTGTGCATG CGGAGGCG TTTTGCGGGC chr3R:4400138-4400258 48 1.16e-04 TTTTTATTTT CACATCTG AAAATTGGTT chr3L:6792567-6792687 27 1.32e-04 gcccaccatc cgcaccTG TTCCACACGA chrX:7323810-7323930 64 1.73e-04 TTTTTTTAAA CACACGCG ATTAAAATAT chr2L:7821679-7821799 49 1.73e-04 GCGCGATTGA CAGATGTG CGACGTGCAT chr2R:13623001-13623121 73 1.86e-04 TCGTCAGCAG CGGACGTG CGTCGTGGCG chr2L:6960273-6960393 30 2.03e-04 AATGTGTTTA CGCCTCTG CGCTAGAGAT chr2R:14645097-14645217 38 2.26e-04 ACGAAAAGCA CACAGGCG CACTGTGGCG chr2L:7388124-7388244 41 2.86e-04 AATGCAGCTG CAGCTGCG GATGATCGCG chr2R:22874585-22874705 59 2.86e-04 TACAACAGTG CGGATGCT CCGCTTCACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSATSCG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17740876-17740996 4.2e-06 55_[+1]_57 chr3R:7606929-7607049 4.2e-06 79_[+1]_33 chr2L:20592734-20592854 4.2e-06 88_[+1]_24 chr2L:13836070-13836190 4.2e-06 32_[+1]_80 chr2L:9279417-9279537 4.2e-06 70_[+1]_42 chr2L:4730983-4731103 4.2e-06 82_[+1]_30 chr3L:20752967-20753087 4.2e-06 54_[+1]_58 chrX:17398105-17398225 4.2e-06 54_[+1]_58 chr3L:22199904-22200024 4.2e-06 70_[+1]_42 chr2L:5372090-5372210 4.2e-06 35_[+1]_77 chr3L:19062461-19062581 4.2e-06 38_[+1]_74 chr3L:13925148-13925268 4.2e-06 31_[+1]_81 chr3R:4885897-4886017 4.2e-06 34_[+1]_78 chr3L:9471668-9471788 4.2e-06 102_[+1]_10 chrX:8211233-8211353 4.2e-06 44_[+1]_68 chrX:4234585-4234705 4.2e-06 83_[+1]_29 chrX:8724973-8725093 4.2e-06 53_[+1]_59 chrX:19552683-19552803 4.2e-06 38_[+1]_74 chr2R:9293464-9293584 4.2e-06 79_[+1]_33 chr3L:19058963-19059083 4.2e-06 63_[+1]_49 chr3R:4284539-4284659 4.2e-06 59_[+1]_53 chr3R:10647310-10647430 4.2e-06 58_[+1]_54 chr3L:12681295-12681415 1.3e-05 35_[+1]_77 chrX:7102060-7102180 1.3e-05 97_[+1]_15 chr3R:19836742-19836862 1.7e-05 25_[+1]_87 chrX:5611796-5611916 1.7e-05 93_[+1]_19 chr3R:16827233-16827353 1.7e-05 85_[+1]_27 chr3R:11492049-11492169 1.7e-05 19_[+1]_93 chr2R:14503853-14503973 1.7e-05 111_[+1]_1 chr3L:391522-391642 1.7e-05 40_[+1]_72 chrX:21018002-21018122 1.7e-05 86_[+1]_26 chr3R:8818497-8818617 1.7e-05 54_[+1]_58 chr3L:5937527-5937647 1.7e-05 84_[+1]_28 chr3L:19871838-19871958 1.7e-05 64_[+1]_48 chr3R:31932499-31932619 1.7e-05 76_[+1]_36 chrX:6642141-6642261 1.7e-05 44_[+1]_68 chr3R:7304599-7304719 1.7e-05 71_[+1]_41 chr3L:17562364-17562484 1.7e-05 41_[+1]_71 chr2L:12083413-12083533 1.7e-05 68_[+1]_44 chr3L:17759211-17759331 1.7e-05 43_[+1]_69 chrX:16216623-16216743 1.7e-05 9_[+1]_103 chrX:13089514-13089634 1.7e-05 90_[+1]_22 chrX:2608609-2608729 1.7e-05 [+1]_112 chrX:17712032-17712152 1.7e-05 18_[+1]_94 chr3L:21598349-21598469 2.4e-05 62_[+1]_50 chr2R:11964728-11964848 2.4e-05 40_[+1]_72 chrX:19557044-19557164 3.8e-05 54_[+1]_58 chr3L:3022916-3023036 3.8e-05 84_[+1]_28 chrX:8770907-8771027 3.8e-05 46_[+1]_66 chr2R:17851201-17851321 3.8e-05 110_[+1]_2 chr2L:6956864-6956984 3.8e-05 57_[+1]_55 chr3L:5984201-5984321 3.8e-05 106_[+1]_6 chr3L:15583753-15583873 3.8e-05 103_[+1]_9 chr3L:4262485-4262605 7.2e-05 49_[+1]_63 chr3R:19875728-19875848 7.2e-05 25_[+1]_87 chr2R:20668036-20668156 7.2e-05 90_[+1]_22 chrX:8419771-8419891 7.2e-05 43_[+1]_69 chr2R:20957428-20957548 7.2e-05 50_[+1]_62 chr2R:25012047-25012167 7.2e-05 62_[+1]_50 chr2L:14587221-14587341 7.2e-05 75_[+1]_37 chr3R:14308826-14308946 8.7e-05 39_[+1]_73 chr3R:8134727-8134847 9.7e-05 61_[+1]_51 chrX:19578348-19578468 0.0001 17_[+1]_95 chr3R:4400138-4400258 0.00012 47_[+1]_65 chr3L:6792567-6792687 0.00013 26_[+1]_86 chrX:7323810-7323930 0.00017 63_[+1]_49 chr2L:7821679-7821799 0.00017 48_[+1]_64 chr2R:13623001-13623121 0.00019 72_[+1]_40 chr2L:6960273-6960393 0.0002 29_[+1]_83 chr2R:14645097-14645217 0.00023 37_[+1]_75 chr2L:7388124-7388244 0.00029 40_[+1]_72 chr2R:22874585-22874705 0.00029 58_[+1]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSATSCG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGSATSCG width=8 seqs=72 chrX:17740876-17740996 ( 56) CGCATCCG 1 chr3R:7606929-7607049 ( 80) CGCATCCG 1 chr2L:20592734-20592854 ( 89) CGCATCCG 1 chr2L:13836070-13836190 ( 33) CGCATCCG 1 chr2L:9279417-9279537 ( 71) CGCATCCG 1 chr2L:4730983-4731103 ( 83) CGCATCCG 1 chr3L:20752967-20753087 ( 55) CGCATCCG 1 chrX:17398105-17398225 ( 55) CGCATCCG 1 chr3L:22199904-22200024 ( 71) CGCATCCG 1 chr2L:5372090-5372210 ( 36) CGCATCCG 1 chr3L:19062461-19062581 ( 39) CGCATCCG 1 chr3L:13925148-13925268 ( 32) CGCATCCG 1 chr3R:4885897-4886017 ( 35) CGCATCCG 1 chr3L:9471668-9471788 ( 103) CGCATCCG 1 chrX:8211233-8211353 ( 45) CGCATCCG 1 chrX:4234585-4234705 ( 84) CGCATCCG 1 chrX:8724973-8725093 ( 54) CGCATCCG 1 chrX:19552683-19552803 ( 39) CGCATCCG 1 chr2R:9293464-9293584 ( 80) CGCATCCG 1 chr3L:19058963-19059083 ( 64) CGCATCCG 1 chr3R:4284539-4284659 ( 60) CGCATCCG 1 chr3R:10647310-10647430 ( 59) CGCATCCG 1 chr3L:12681295-12681415 ( 36) CGGATCCG 1 chrX:7102060-7102180 ( 98) CGGATCCG 1 chr3R:19836742-19836862 ( 26) CGGATGCG 1 chrX:5611796-5611916 ( 94) CGGATGCG 1 chr3R:16827233-16827353 ( 86) CGGATGCG 1 chr3R:11492049-11492169 ( 20) CGGATGCG 1 chr2R:14503853-14503973 ( 112) CGGATGCG 1 chr3L:391522-391642 ( 41) CGGATGCG 1 chrX:21018002-21018122 ( 87) CGGATGCG 1 chr3R:8818497-8818617 ( 55) CGGATGCG 1 chr3L:5937527-5937647 ( 85) CGGATGCG 1 chr3L:19871838-19871958 ( 65) CGGATGCG 1 chr3R:31932499-31932619 ( 77) CGGATGCG 1 chrX:6642141-6642261 ( 45) CGGATGCG 1 chr3R:7304599-7304719 ( 72) CGGATGCG 1 chr3L:17562364-17562484 ( 42) CGGATGCG 1 chr2L:12083413-12083533 ( 69) CGGATGCG 1 chr3L:17759211-17759331 ( 44) CGGATGCG 1 chrX:16216623-16216743 ( 10) CGGATGCG 1 chrX:13089514-13089634 ( 91) CGGATGCG 1 chrX:2608609-2608729 ( 1) CGGATGCG 1 chrX:17712032-17712152 ( 19) CGGATGCG 1 chr3L:21598349-21598469 ( 63) CGCATCTG 1 chr2R:11964728-11964848 ( 41) CGCATCTG 1 chrX:19557044-19557164 ( 55) CACATCCG 1 chr3L:3022916-3023036 ( 85) CACATCCG 1 chrX:8770907-8771027 ( 47) CACATCCG 1 chr2R:17851201-17851321 ( 111) CACATCCG 1 chr2L:6956864-6956984 ( 58) CACATCCG 1 chr3L:5984201-5984321 ( 107) CACATCCG 1 chr3L:15583753-15583873 ( 104) CACATCCG 1 chr3L:4262485-4262605 ( 50) CGGATGTG 1 chr3R:19875728-19875848 ( 26) CGCACGCG 1 chr2R:20668036-20668156 ( 91) CGGATGTG 1 chrX:8419771-8419891 ( 44) CGGATGTG 1 chr2R:20957428-20957548 ( 51) CGGATGTG 1 chr2R:25012047-25012167 ( 63) CGGATGTG 1 chr2L:14587221-14587341 ( 76) CGGATGTG 1 chr3R:14308826-14308946 ( 40) CGCAGCCG 1 chr3R:8134727-8134847 ( 62) CGCCTGCG 1 chrX:19578348-19578468 ( 18) CGGAGGCG 1 chr3R:4400138-4400258 ( 48) CACATCTG 1 chr3L:6792567-6792687 ( 27) CGCACCTG 1 chrX:7323810-7323930 ( 64) CACACGCG 1 chr2L:7821679-7821799 ( 49) CAGATGTG 1 chr2R:13623001-13623121 ( 73) CGGACGTG 1 chr2L:6960273-6960393 ( 30) CGCCTCTG 1 chr2R:14645097-14645217 ( 38) CACAGGCG 1 chr2L:7388124-7388244 ( 41) CAGCTGCG 1 chr2R:22874585-22874705 ( 59) CGGATGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSATSCG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.74699 E= 1.6e-060 -1281 243 -1281 -1281 -91 -1281 214 -1281 -1281 155 128 -1281 162 -215 -1281 -1281 -1281 -174 -218 153 -1281 147 136 -1281 -1281 214 -1281 -79 -1281 -1281 238 -449 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSATSCG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 1.6e-060 0.000000 1.000000 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.541667 0.458333 0.000000 0.958333 0.041667 0.000000 0.000000 0.000000 0.055556 0.041667 0.902778 0.000000 0.513889 0.486111 0.000000 0.000000 0.819444 0.000000 0.180556 0.000000 0.000000 0.986111 0.013889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSATSCG MEME-1 regular expression -------------------------------------------------------------------------------- CG[CG]AT[CG]CG -------------------------------------------------------------------------------- Time 7.73 secs. ******************************************************************************** ******************************************************************************** MOTIF RCATCCGC MEME-2 width = 8 sites = 35 llr = 366 E-value = 1.4e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCATCCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4:a::::: pos.-specific C :8::aa:a probability G 6:::::9: matrix T :2:a::1: bits 2.4 ** * 2.2 ** * 1.9 **** 1.7 * **** Relative 1.5 ******* Entropy 1.2 ******** (15.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCATCCGC consensus AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCATCCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:13836070-13836190 10 4.19e-06 TCCGCATTC GCATCCGC ACGCGCTCTC chr2L:9279417-9279537 42 4.19e-06 TCTAgcatcg gcatccgc actcgcatcc chr3L:20752967-20753087 26 4.19e-06 CTTTCCTtcc gcatccgc atccgcatcc chrX:17398105-17398225 86 4.19e-06 atgcgctaat gcatccgc aCGGCAAGCT chr3L:22199904-22200024 60 4.19e-06 attcgcatca gcatccgc atccgcatcc chr2L:5372090-5372210 71 4.19e-06 ATCCGCACCG GCATCCGC GTCGGCGTTC chr3L:19062461-19062581 22 4.19e-06 agtggccttt gcatccgc ttctacatcc chrX:8211233-8211353 34 4.19e-06 ATTCAcatcc gcatccgc attcgcatcc chr3R:8134727-8134847 72 4.19e-06 CGCCTGCGGA GCATCCGC CATCTACACG chrX:4234585-4234705 55 4.19e-06 atccgcattc gcatccgc acatacatcc chrX:8724973-8725093 43 4.19e-06 acccgtatcc gcatccgc atccgcatcc chrX:19552683-19552803 52 4.19e-06 atccgcatcc gcatccgc actcgcgtcc chr3L:5984201-5984321 96 4.19e-06 CCCGGTCGGA GCATCCGC ATGCACATCC chr3R:4284539-4284659 49 4.19e-06 TATCCAGTCA gcatccgc atccgcatcc chr3R:10647310-10647430 48 4.19e-06 atccgccatc gcatccgc aaccgcatcc chr2R:11964728-11964848 72 1.11e-05 ATCCGCACGC ACATCCGC ACCACAGACT chr2L:20592734-20592854 78 1.11e-05 atccgcagcc acatccgc aggcgcatcc chr2R:14503853-14503973 89 1.11e-05 CTGCGCAAAT ACATCCGC TCCTATCCGA chr2L:4730983-4731103 54 1.11e-05 AAAAGCATTc acatccgc acccatatcc chr3L:3022916-3023036 94 1.11e-05 CCACATCCGC ACATCCGC AGCCTTGCAG chrX:8770907-8771027 30 1.11e-05 TCTTTGGCAA acatccgc atcctcatcc chr3L:13925148-13925268 56 1.11e-05 ccaatccaca acatccgc aatccgcTAG chr3L:9471668-9471788 32 1.11e-05 CGCCACACTC ACATCCGC ACCACCAGAC chr3L:15583753-15583873 93 1.11e-05 CGGCTCCtcc acatccgc atccacatcc chr3L:21598349-21598469 84 1.82e-05 GTGTGGCTGT GTATCCGC ATCTGTGTGT chrX:19557044-19557164 44 1.82e-05 attcacgtcc gtatccgc acacacatcc chr3R:4885897-4886017 18 1.82e-05 Ctccgtatcc gtatccgc atcggcatcc chr3R:19643558-19643678 74 3.24e-05 CTTAACGCGG ATATCCGC ATCGATCTTG chrX:8419771-8419891 66 3.24e-05 AGCACTTGTT ATATCCGC CGGATGATTG chr2R:17851201-17851321 53 3.24e-05 CGCCGCCGTT GCAGCCGC CACTTCAGTG chr2R:13623001-13623121 19 3.24e-05 CCTCTCCCAA ATATCCGC GCTGTTCGGA chrX:19578348-19578468 44 3.24e-05 GCGTCTGCGG ATATCCGC CGGCTAAAGA chr3R:7606929-7607049 99 3.93e-05 actctcatcc gcatcctc agcctcaGCT chr3L:19058963-19059083 77 3.93e-05 ATCCGCGGCA GCATCCTC AGAGACACTT chr3L:19834272-19834392 36 4.34e-05 TTCGCATTTT GCATCCCC AACAAAGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCATCCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:13836070-13836190 4.2e-06 9_[+2]_103 chr2L:9279417-9279537 4.2e-06 41_[+2]_71 chr3L:20752967-20753087 4.2e-06 25_[+2]_87 chrX:17398105-17398225 4.2e-06 85_[+2]_27 chr3L:22199904-22200024 4.2e-06 59_[+2]_53 chr2L:5372090-5372210 4.2e-06 70_[+2]_42 chr3L:19062461-19062581 4.2e-06 21_[+2]_91 chrX:8211233-8211353 4.2e-06 33_[+2]_79 chr3R:8134727-8134847 4.2e-06 71_[+2]_41 chrX:4234585-4234705 4.2e-06 54_[+2]_58 chrX:8724973-8725093 4.2e-06 42_[+2]_70 chrX:19552683-19552803 4.2e-06 51_[+2]_61 chr3L:5984201-5984321 4.2e-06 95_[+2]_17 chr3R:4284539-4284659 4.2e-06 48_[+2]_64 chr3R:10647310-10647430 4.2e-06 47_[+2]_65 chr2R:11964728-11964848 1.1e-05 71_[+2]_41 chr2L:20592734-20592854 1.1e-05 77_[+2]_35 chr2R:14503853-14503973 1.1e-05 88_[+2]_24 chr2L:4730983-4731103 1.1e-05 53_[+2]_59 chr3L:3022916-3023036 1.1e-05 93_[+2]_19 chrX:8770907-8771027 1.1e-05 29_[+2]_83 chr3L:13925148-13925268 1.1e-05 55_[+2]_57 chr3L:9471668-9471788 1.1e-05 31_[+2]_81 chr3L:15583753-15583873 1.1e-05 92_[+2]_20 chr3L:21598349-21598469 1.8e-05 83_[+2]_29 chrX:19557044-19557164 1.8e-05 43_[+2]_69 chr3R:4885897-4886017 1.8e-05 17_[+2]_95 chr3R:19643558-19643678 3.2e-05 73_[+2]_39 chrX:8419771-8419891 3.2e-05 65_[+2]_47 chr2R:17851201-17851321 3.2e-05 52_[+2]_60 chr2R:13623001-13623121 3.2e-05 18_[+2]_94 chrX:19578348-19578468 3.2e-05 43_[+2]_69 chr3R:7606929-7607049 3.9e-05 98_[+2]_14 chr3L:19058963-19059083 3.9e-05 76_[+2]_36 chr3L:19834272-19834392 4.3e-05 35_[+2]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCATCCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCATCCGC width=8 seqs=35 chr2L:13836070-13836190 ( 10) GCATCCGC 1 chr2L:9279417-9279537 ( 42) GCATCCGC 1 chr3L:20752967-20753087 ( 26) GCATCCGC 1 chrX:17398105-17398225 ( 86) GCATCCGC 1 chr3L:22199904-22200024 ( 60) GCATCCGC 1 chr2L:5372090-5372210 ( 71) GCATCCGC 1 chr3L:19062461-19062581 ( 22) GCATCCGC 1 chrX:8211233-8211353 ( 34) GCATCCGC 1 chr3R:8134727-8134847 ( 72) GCATCCGC 1 chrX:4234585-4234705 ( 55) GCATCCGC 1 chrX:8724973-8725093 ( 43) GCATCCGC 1 chrX:19552683-19552803 ( 52) GCATCCGC 1 chr3L:5984201-5984321 ( 96) GCATCCGC 1 chr3R:4284539-4284659 ( 49) GCATCCGC 1 chr3R:10647310-10647430 ( 48) GCATCCGC 1 chr2R:11964728-11964848 ( 72) ACATCCGC 1 chr2L:20592734-20592854 ( 78) ACATCCGC 1 chr2R:14503853-14503973 ( 89) ACATCCGC 1 chr2L:4730983-4731103 ( 54) ACATCCGC 1 chr3L:3022916-3023036 ( 94) ACATCCGC 1 chrX:8770907-8771027 ( 30) ACATCCGC 1 chr3L:13925148-13925268 ( 56) ACATCCGC 1 chr3L:9471668-9471788 ( 32) ACATCCGC 1 chr3L:15583753-15583873 ( 93) ACATCCGC 1 chr3L:21598349-21598469 ( 84) GTATCCGC 1 chrX:19557044-19557164 ( 44) GTATCCGC 1 chr3R:4885897-4886017 ( 18) GTATCCGC 1 chr3R:19643558-19643678 ( 74) ATATCCGC 1 chrX:8419771-8419891 ( 66) ATATCCGC 1 chr2R:17851201-17851321 ( 53) GCAGCCGC 1 chr2R:13623001-13623121 ( 19) ATATCCGC 1 chrX:19578348-19578468 ( 44) ATATCCGC 1 chr3R:7606929-7607049 ( 99) GCATCCTC 1 chr3L:19058963-19059083 ( 77) GCATCCTC 1 chr3L:19834272-19834392 ( 36) GCATCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCATCCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4775 E= 1.4e-028 25 -1177 173 -1177 -1177 211 -1177 -64 168 -1177 -1177 -1177 -1177 -1177 -272 163 -1177 243 -1177 -1177 -1177 243 -1177 -1177 -1177 -270 227 -245 -1177 243 -1177 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCATCCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 1.4e-028 0.371429 0.000000 0.628571 0.000000 0.000000 0.800000 0.000000 0.200000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.028571 0.971429 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.028571 0.914286 0.057143 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCATCCGC MEME-2 regular expression -------------------------------------------------------------------------------- [GA][CT]ATCCGC -------------------------------------------------------------------------------- Time 14.10 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCGGATG MEME-3 width = 8 sites = 38 llr = 386 E-value = 1.5e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCGGATG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::91: pos.-specific C 1:a:::1: probability G 1a:aa::9 matrix T 8:::::91 bits 2.4 ** * 2.2 **** 1.9 **** * 1.7 **** * Relative 1.5 ***** * Entropy 1.2 ***** * (14.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGCGGATG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGATG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19557044-19557164 24 7.28e-06 TTTGGCGGCA TGCGGATG Acattcacgt chr3R:11492049-11492169 48 7.28e-06 cggatacggg tgcggatg tcggggcgga chr2L:7821679-7821799 104 7.28e-06 ACGCACGCAG TGCGGATG TTCTGATTT chr3L:391522-391642 51 7.28e-06 cggatgcgag tgcggatg tgggtgtgga chr2L:21681457-21681577 44 7.28e-06 ACAGACATGT TGCGGATG TTCCGCTTCT chr2R:20957428-20957548 71 7.28e-06 GATGTGAGCA TGCGGATG ACGACCGTGA chrX:21018002-21018122 67 7.28e-06 GTCTGCTGGC tgcggatg cggacgcgga chr3R:8818497-8818617 86 7.28e-06 gggagacggg tgcggatg tgggcgaggg chr3L:5937527-5937647 77 7.28e-06 GAGTtgcgga tgcggatg cggatgcgag chr3L:12681295-12681415 46 7.28e-06 cggatccgga tgcggatg cgaatgcgga chr2L:6956864-6956984 48 7.28e-06 GTACATTTTT TGCGGATG TCCACATCCG chr3R:31932499-31932619 63 7.28e-06 cggatgctga tgcggatg tggatgcgga chrX:6642141-6642261 61 7.28e-06 cggatgtggc tgcggatg TGTTTGTCAG chr3R:7304599-7304719 64 7.28e-06 cggacgcgga tgcggatg cggatgcgga chr3L:17562364-17562484 28 7.28e-06 cggatgagag tgcggatg tgagtgcgga chr2L:12083413-12083533 55 7.28e-06 gtactgcgga tgcggatg tgcgtgcgga chrX:7102060-7102180 77 7.28e-06 cggtggcgga tgcggatg ccgcgctgac chr2R:9293464-9293584 57 7.28e-06 GGCGTATCGC TGCGGATG CTCCGCACTC chr3L:17759211-17759331 72 7.28e-06 cggatagggg tgcggatg cggatacggc chrX:16216623-16216743 61 7.28e-06 GCGACGAAGA TGCGGATG TGCGGAGAGC chrX:2608609-2608729 11 7.28e-06 cggatgcggt tgcggatg tggttgcgga chrX:17712032-17712152 53 7.28e-06 cggatgtgga tgcggatg tataatgttt chr3R:29933177-29933297 68 7.28e-06 ATTAAATTAT TGCGGATG TCGTGCGGAT chrX:5611796-5611916 110 1.17e-05 cggatgttga ggcggatg tgg chrX:13089514-13089634 77 1.17e-05 GTGCGTGGGT GGCGGATG TGGCTGCGGA chr3R:16827233-16827353 66 1.60e-05 cggaactggc cgcggatg cggaggcgga chr2L:14587221-14587341 62 1.60e-05 cggatgtgtt cgcggatg ggagcgcgga chr3R:19836742-19836862 63 2.03e-05 CTACTGCGAC TGCGGACG CTCCGCTCAC chr3R:8349626-8349746 73 2.76e-05 AAGCCAGTGC TGCGGAAG CTTGTCGCTG chr3L:6059200-6059320 22 2.76e-05 AGGCAAGCGG TGCGGAAG TGGGTTACAA chr3L:19058963-19059083 47 4.40e-05 TGCCATCCTG TGCGGAGG ATCCGCAGAC chr2R:22874585-22874705 40 4.40e-05 CATTGCTATT TGCGGATT TTACAACAGT chr3L:11336532-11336652 18 4.84e-05 AAATTTAATA TGCGGCTG AAAAAAGCAT chr2R:9087711-9087831 7 5.56e-05 TAATTC TGCGGttg aagtaaataa chr3L:18349444-18349564 73 6.28e-05 ATAAACTCTT TGCCGATG AATTAAGTTT chrX:17740876-17740996 113 6.54e-05 CAACGGCAAC GGCGGACG chr3L:15583753-15583873 65 8.23e-05 TTAGCCTGGC GGCGGATT CCTTGGCCAG chr2L:7388124-7388244 55 9.90e-05 TGCGGATGAT CGCGGATT TTAATTGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGATG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19557044-19557164 7.3e-06 23_[+3]_89 chr3R:11492049-11492169 7.3e-06 47_[+3]_65 chr2L:7821679-7821799 7.3e-06 103_[+3]_9 chr3L:391522-391642 7.3e-06 50_[+3]_62 chr2L:21681457-21681577 7.3e-06 43_[+3]_69 chr2R:20957428-20957548 7.3e-06 70_[+3]_42 chrX:21018002-21018122 7.3e-06 66_[+3]_46 chr3R:8818497-8818617 7.3e-06 85_[+3]_27 chr3L:5937527-5937647 7.3e-06 76_[+3]_36 chr3L:12681295-12681415 7.3e-06 45_[+3]_67 chr2L:6956864-6956984 7.3e-06 47_[+3]_65 chr3R:31932499-31932619 7.3e-06 62_[+3]_50 chrX:6642141-6642261 7.3e-06 60_[+3]_52 chr3R:7304599-7304719 7.3e-06 63_[+3]_49 chr3L:17562364-17562484 7.3e-06 27_[+3]_85 chr2L:12083413-12083533 7.3e-06 54_[+3]_58 chrX:7102060-7102180 7.3e-06 76_[+3]_36 chr2R:9293464-9293584 7.3e-06 56_[+3]_56 chr3L:17759211-17759331 7.3e-06 71_[+3]_41 chrX:16216623-16216743 7.3e-06 60_[+3]_52 chrX:2608609-2608729 7.3e-06 10_[+3]_102 chrX:17712032-17712152 7.3e-06 52_[+3]_60 chr3R:29933177-29933297 7.3e-06 67_[+3]_45 chrX:5611796-5611916 1.2e-05 109_[+3]_3 chrX:13089514-13089634 1.2e-05 76_[+3]_36 chr3R:16827233-16827353 1.6e-05 65_[+3]_47 chr2L:14587221-14587341 1.6e-05 61_[+3]_51 chr3R:19836742-19836862 2e-05 62_[+3]_50 chr3R:8349626-8349746 2.8e-05 72_[+3]_40 chr3L:6059200-6059320 2.8e-05 21_[+3]_91 chr3L:19058963-19059083 4.4e-05 46_[+3]_66 chr2R:22874585-22874705 4.4e-05 39_[+3]_73 chr3L:11336532-11336652 4.8e-05 17_[+3]_95 chr2R:9087711-9087831 5.6e-05 6_[+3]_106 chr3L:18349444-18349564 6.3e-05 72_[+3]_40 chrX:17740876-17740996 6.5e-05 112_[+3] chr3L:15583753-15583873 8.2e-05 64_[+3]_48 chr2L:7388124-7388244 9.9e-05 54_[+3]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGATG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCGGATG width=8 seqs=38 chrX:19557044-19557164 ( 24) TGCGGATG 1 chr3R:11492049-11492169 ( 48) TGCGGATG 1 chr2L:7821679-7821799 ( 104) TGCGGATG 1 chr3L:391522-391642 ( 51) TGCGGATG 1 chr2L:21681457-21681577 ( 44) TGCGGATG 1 chr2R:20957428-20957548 ( 71) TGCGGATG 1 chrX:21018002-21018122 ( 67) TGCGGATG 1 chr3R:8818497-8818617 ( 86) TGCGGATG 1 chr3L:5937527-5937647 ( 77) TGCGGATG 1 chr3L:12681295-12681415 ( 46) TGCGGATG 1 chr2L:6956864-6956984 ( 48) TGCGGATG 1 chr3R:31932499-31932619 ( 63) TGCGGATG 1 chrX:6642141-6642261 ( 61) TGCGGATG 1 chr3R:7304599-7304719 ( 64) TGCGGATG 1 chr3L:17562364-17562484 ( 28) TGCGGATG 1 chr2L:12083413-12083533 ( 55) TGCGGATG 1 chrX:7102060-7102180 ( 77) TGCGGATG 1 chr2R:9293464-9293584 ( 57) TGCGGATG 1 chr3L:17759211-17759331 ( 72) TGCGGATG 1 chrX:16216623-16216743 ( 61) TGCGGATG 1 chrX:2608609-2608729 ( 11) TGCGGATG 1 chrX:17712032-17712152 ( 53) TGCGGATG 1 chr3R:29933177-29933297 ( 68) TGCGGATG 1 chrX:5611796-5611916 ( 110) GGCGGATG 1 chrX:13089514-13089634 ( 77) GGCGGATG 1 chr3R:16827233-16827353 ( 66) CGCGGATG 1 chr2L:14587221-14587341 ( 62) CGCGGATG 1 chr3R:19836742-19836862 ( 63) TGCGGACG 1 chr3R:8349626-8349746 ( 73) TGCGGAAG 1 chr3L:6059200-6059320 ( 22) TGCGGAAG 1 chr3L:19058963-19059083 ( 47) TGCGGAGG 1 chr2R:22874585-22874705 ( 40) TGCGGATT 1 chr3L:11336532-11336652 ( 18) TGCGGCTG 1 chr2R:9087711-9087831 ( 7) TGCGGTTG 1 chr3L:18349444-18349564 ( 73) TGCCGATG 1 chrX:17740876-17740996 ( 113) GGCGGACG 1 chr3L:15583753-15583873 ( 65) GGCGGATT 1 chr2L:7388124-7388244 ( 55) CGCGGATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGATG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4344 E= 1.5e-028 -1189 -123 -84 138 -1189 -1189 240 -1189 -1189 243 -1189 -1189 -1189 -282 236 -1189 -1189 -1189 240 -1189 160 -282 -1189 -357 -257 -182 -284 147 -1189 -1189 228 -198 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGATG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 1.5e-028 0.000000 0.078947 0.105263 0.815789 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.026316 0.973684 0.000000 0.000000 0.000000 1.000000 0.000000 0.947368 0.026316 0.000000 0.026316 0.052632 0.052632 0.026316 0.868421 0.000000 0.000000 0.921053 0.078947 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGGATG MEME-3 regular expression -------------------------------------------------------------------------------- TGCGGATG -------------------------------------------------------------------------------- Time 20.16 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGGCGS MEME-4 width = 8 sites = 19 llr = 191 E-value = 8.4e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGGCGS MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::211 pos.-specific C 1181:8:4 probability G 99:99:95 matrix T ::2:1::: bits 2.4 2.2 ** * 1.9 ** ** * 1.7 ******* Relative 1.5 ******* Entropy 1.2 ******** (14.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCGGCGG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:16827233-16827353 33 1.58e-06 ccgcagcggc ggcggcgg ctgcagcagc chr3R:31932499-31932619 26 1.58e-06 TGGCCTGATA GGCGGCGG CTGACGCTGC chr2L:12083413-12083533 16 1.58e-06 CGACGAACTG GGCGGCGG ATAGtgcgga chr2L:14587221-14587341 35 1.58e-06 GTCAACGTCA GGCGGCGG AGCAGGAcgc chr3L:5937527-5937647 57 3.13e-06 TGCTCCACCG GGCGGCGC TGGAGTtgcg chrX:6642141-6642261 31 8.44e-06 ACTCTCAAga ggcggagg cggatgcgga chrX:7102060-7102180 68 8.44e-06 gggcggaagc ggtggcgg atgcggatgc chrX:2608609-2608729 44 8.44e-06 atgAACCAAC GGTGGCGG TGGCCATTTC chr3R:21856595-21856715 6 1.37e-05 TGAGA GGTGGCGC GAGTAGGGAA chr3R:7606929-7607049 69 1.37e-05 GCGCCAGCTA GGCGGAgc atccgcatcc chr3R:11492049-11492169 60 1.37e-05 cggatgtcgg ggcggaGC CATGACTACG chr3L:6059200-6059320 3 1.89e-05 GT GGCGGCAG GAGGCAAGCG chrX:17398105-17398225 3 1.89e-05 CT GGCGTCGG TGTGCTGCCA chrX:7102293-7102413 17 3.13e-05 TGGTGGGCAG GGCGGCGA TGTAACATCG chr3L:6792567-6792687 80 3.13e-05 GCAGACCGTC GGCGGCAC CAGCAGCAAC chr3L:12681295-12681415 66 3.13e-05 aatgcggatc GGCGTCGC TCTTAATGGT chr3L:17759211-17759331 10 3.13e-05 TTGAAGCGG GCCGGCGG ATGTCCATCC chr2L:16743131-16743251 45 3.59e-05 TAATCTTATG GGCCGCGC TTTTTGAGGT chr3L:5984201-5984321 57 3.59e-05 CCTCCGCCTC CGCGGCGC CAGTCTCAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16827233-16827353 1.6e-06 32_[+4]_80 chr3R:31932499-31932619 1.6e-06 25_[+4]_87 chr2L:12083413-12083533 1.6e-06 15_[+4]_97 chr2L:14587221-14587341 1.6e-06 34_[+4]_78 chr3L:5937527-5937647 3.1e-06 56_[+4]_56 chrX:6642141-6642261 8.4e-06 30_[+4]_82 chrX:7102060-7102180 8.4e-06 67_[+4]_45 chrX:2608609-2608729 8.4e-06 43_[+4]_69 chr3R:21856595-21856715 1.4e-05 5_[+4]_107 chr3R:7606929-7607049 1.4e-05 68_[+4]_44 chr3R:11492049-11492169 1.4e-05 59_[+4]_53 chr3L:6059200-6059320 1.9e-05 2_[+4]_110 chrX:17398105-17398225 1.9e-05 2_[+4]_110 chrX:7102293-7102413 3.1e-05 16_[+4]_96 chr3L:6792567-6792687 3.1e-05 79_[+4]_33 chr3L:12681295-12681415 3.1e-05 65_[+4]_47 chr3L:17759211-17759331 3.1e-05 9_[+4]_103 chr2L:16743131-16743251 3.6e-05 44_[+4]_68 chr3L:5984201-5984321 3.6e-05 56_[+4]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGGCGS width=8 seqs=19 chr3R:16827233-16827353 ( 33) GGCGGCGG 1 chr3R:31932499-31932619 ( 26) GGCGGCGG 1 chr2L:12083413-12083533 ( 16) GGCGGCGG 1 chr2L:14587221-14587341 ( 35) GGCGGCGG 1 chr3L:5937527-5937647 ( 57) GGCGGCGC 1 chrX:6642141-6642261 ( 31) GGCGGAGG 1 chrX:7102060-7102180 ( 68) GGTGGCGG 1 chrX:2608609-2608729 ( 44) GGTGGCGG 1 chr3R:21856595-21856715 ( 6) GGTGGCGC 1 chr3R:7606929-7607049 ( 69) GGCGGAGC 1 chr3R:11492049-11492169 ( 60) GGCGGAGC 1 chr3L:6059200-6059320 ( 3) GGCGGCAG 1 chrX:17398105-17398225 ( 3) GGCGTCGG 1 chrX:7102293-7102413 ( 17) GGCGGCGA 1 chr3L:6792567-6792687 ( 80) GGCGGCAC 1 chr3L:12681295-12681415 ( 66) GGCGTCGC 1 chr3L:17759211-17759331 ( 10) GCCGGCGG 1 chr2L:16743131-16743251 ( 45) GGCCGCGC 1 chr3L:5984201-5984321 ( 57) CGCGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4349 E= 8.4e-004 -1089 -182 232 -1089 -1089 -182 232 -1089 -1089 218 -1089 -99 -1089 -182 232 -1089 -1089 -1089 224 -157 -98 218 -1089 -1089 -157 -1089 224 -1089 -257 118 148 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 8.4e-004 0.000000 0.052632 0.947368 0.000000 0.000000 0.052632 0.947368 0.000000 0.000000 0.842105 0.000000 0.157895 0.000000 0.052632 0.947368 0.000000 0.000000 0.000000 0.894737 0.105263 0.157895 0.842105 0.000000 0.000000 0.105263 0.000000 0.894737 0.000000 0.052632 0.421053 0.526316 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGS MEME-4 regular expression -------------------------------------------------------------------------------- GGCGGCG[GC] -------------------------------------------------------------------------------- Time 26.36 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCMCYS MEME-5 width = 8 sites = 24 llr = 226 E-value = 1.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCMCYS MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::62:: pos.-specific C aa:a4555 probability G ::a::1:5 matrix T :::::25: bits 2.4 **** 2.2 **** 1.9 **** 1.7 **** Relative 1.5 **** * Entropy 1.2 **** * (13.6 bits) 1.0 ***** ** 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGCACCC consensus CATG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCMCYS MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:13836070-13836190 86 3.91e-06 GAACCAGTTG CCGCCCCC GCAACGCCAT chr3L:22199904-22200024 2 3.91e-06 C CCGCCCCC TTACCTACAT chr2L:4730983-4731103 70 7.87e-06 gcacccatat ccgcaccg acatccgcaT chr2L:5372090-5372210 63 7.87e-06 CGCAACACAT CCGCACCG GCATCCGCGT chr2R:11964728-11964848 52 1.44e-05 GCATCTGCAT CCGCACTC GAATCCGCAC chrX:4234585-4234705 23 1.44e-05 CACCCCACAT CCGCACTC CCGTTCACGt chr2R:9293464-9293584 67 1.44e-05 TGCGGATGCT CCGCACTC GCGTCCGCAT chr3L:19058963-19059083 98 1.44e-05 GACACTTGAG CCGCACTC GGCTTAAATG chr3R:7606929-7607049 14 2.11e-05 GCCGCAATTT CCGCCCTG CCGCAACTTT chr2L:20592734-20592854 26 2.11e-05 TTACCATTAG CCGCACTG CACAGTGCGC chrX:8211233-8211353 3 2.11e-05 CT CCGCCCTG CATCCTTATT chrX:8724973-8725093 107 2.11e-05 TGAAGGACTA CCGCACTG AAGTGC chrX:19557044-19557164 74 3.17e-05 atccATATAT CCGCAACC CCCGACCATC chr2R:17851201-17851321 42 3.17e-05 CACGTTGTGG CCGCCGCC GTTGCAGCCG chr3L:19062665-19062785 10 4.24e-05 ATCATCTTG CCGCCACG ATGCGATGGC chr3R:19643558-19643678 93 4.24e-05 TCGATCTTGG CCGCCACG CCCTCGCGAC chr3R:16827233-16827353 23 4.24e-05 GAGGAGCTAg ccgcagcg gcggcggcgg chr2L:9279417-9279537 58 4.89e-05 gcactcgcat ccgcatcc acatccgcat chr3L:20752967-20753087 36 4.89e-05 gcatccgcat ccgcatcc acagccatgt chr3R:4284539-4284659 77 4.89e-05 gcatccccgt ccgcatcc ccgtccgcat chrX:19552683-19552803 80 5.56e-05 gcatctcgat ccgcatcG TGCTGTGCTC chr3R:10647310-10647430 40 7.34e-05 CGCAGTAAat ccgccatc gcatccgcaa chr2R:21323665-21323785 11 9.14e-05 CAAAGCGACG CCGCCATG TCGCAACCTA chr3L:19062461-19062581 8 9.14e-05 ATTATat ccgcagtg gcctttgcat -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCMCYS MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:13836070-13836190 3.9e-06 85_[+5]_27 chr3L:22199904-22200024 3.9e-06 1_[+5]_111 chr2L:4730983-4731103 7.9e-06 69_[+5]_43 chr2L:5372090-5372210 7.9e-06 62_[+5]_50 chr2R:11964728-11964848 1.4e-05 51_[+5]_61 chrX:4234585-4234705 1.4e-05 22_[+5]_90 chr2R:9293464-9293584 1.4e-05 66_[+5]_46 chr3L:19058963-19059083 1.4e-05 97_[+5]_15 chr3R:7606929-7607049 2.1e-05 13_[+5]_99 chr2L:20592734-20592854 2.1e-05 25_[+5]_87 chrX:8211233-8211353 2.1e-05 2_[+5]_110 chrX:8724973-8725093 2.1e-05 106_[+5]_6 chrX:19557044-19557164 3.2e-05 73_[+5]_39 chr2R:17851201-17851321 3.2e-05 41_[+5]_71 chr3L:19062665-19062785 4.2e-05 9_[+5]_103 chr3R:19643558-19643678 4.2e-05 92_[+5]_20 chr3R:16827233-16827353 4.2e-05 22_[+5]_90 chr2L:9279417-9279537 4.9e-05 57_[+5]_55 chr3L:20752967-20753087 4.9e-05 35_[+5]_77 chr3R:4284539-4284659 4.9e-05 76_[+5]_36 chrX:19552683-19552803 5.6e-05 79_[+5]_33 chr3R:10647310-10647430 7.3e-05 39_[+5]_73 chr2R:21323665-21323785 9.1e-05 10_[+5]_102 chr3L:19062461-19062581 9.1e-05 7_[+5]_105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCMCYS MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCMCYS width=8 seqs=24 chr2L:13836070-13836190 ( 86) CCGCCCCC 1 chr3L:22199904-22200024 ( 2) CCGCCCCC 1 chr2L:4730983-4731103 ( 70) CCGCACCG 1 chr2L:5372090-5372210 ( 63) CCGCACCG 1 chr2R:11964728-11964848 ( 52) CCGCACTC 1 chrX:4234585-4234705 ( 23) CCGCACTC 1 chr2R:9293464-9293584 ( 67) CCGCACTC 1 chr3L:19058963-19059083 ( 98) CCGCACTC 1 chr3R:7606929-7607049 ( 14) CCGCCCTG 1 chr2L:20592734-20592854 ( 26) CCGCACTG 1 chrX:8211233-8211353 ( 3) CCGCCCTG 1 chrX:8724973-8725093 ( 107) CCGCACTG 1 chrX:19557044-19557164 ( 74) CCGCAACC 1 chr2R:17851201-17851321 ( 42) CCGCCGCC 1 chr3L:19062665-19062785 ( 10) CCGCCACG 1 chr3R:19643558-19643678 ( 93) CCGCCACG 1 chr3R:16827233-16827353 ( 23) CCGCAGCG 1 chr2L:9279417-9279537 ( 58) CCGCATCC 1 chr3L:20752967-20753087 ( 36) CCGCATCC 1 chr3R:4284539-4284659 ( 77) CCGCATCC 1 chrX:19552683-19552803 ( 80) CCGCATCG 1 chr3R:10647310-10647430 ( 40) CCGCCATC 1 chr2R:21323665-21323785 ( 11) CCGCCATG 1 chr3L:19062461-19062581 ( 8) CCGCAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCMCYS MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1076 E= 1.4e+000 -1123 243 -1123 -1123 -1123 243 -1123 -1123 -1123 -1123 240 -1123 -1123 243 -1123 -1123 100 101 -1123 -1123 -58 143 -60 -91 -1123 155 -1123 55 -1123 143 140 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCMCYS MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.4e+000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.625000 0.375000 0.000000 0.000000 0.208333 0.500000 0.125000 0.166667 0.000000 0.541667 0.000000 0.458333 0.000000 0.500000 0.500000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCMCYS MEME-5 regular expression -------------------------------------------------------------------------------- CCGC[AC][CA][CT][CG] -------------------------------------------------------------------------------- Time 32.49 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22874585-22874705 1.50e-03 39_[+3(4.40e-05)]_9_[+3(7.28e-06)]_\ 56 chr2L:14587221-14587341 2.26e-06 34_[+4(1.58e-06)]_7_[+3(1.60e-05)]_\ 4_[+3(1.60e-05)]_4_[+3(1.60e-05)]_4_[+3(1.60e-05)]_27 chr3R:29933177-29933297 3.98e-03 67_[+3(7.28e-06)]_3_[+3(7.28e-06)]_\ 34 chr3R:10647310-10647430 1.06e-07 46_[+1(4.19e-06)]_4_[+1(4.19e-06)]_\ 54 chr3R:4284539-4284659 6.42e-06 53_[+1(4.19e-06)]_5_[+2(4.34e-05)]_\ 4_[+2(4.34e-05)]_34 chr3L:15583753-15583873 2.07e-09 37_[+2(8.19e-05)]_16_[+4(1.58e-06)]_\ 23_[+2(1.11e-05)]_4_[+2(1.11e-05)]_8 chr3L:19058963-19059083 1.38e-09 46_[+3(4.40e-05)]_9_[+1(4.19e-06)]_\ 5_[+2(3.93e-05)]_13_[+5(1.44e-05)]_15 chrX:17712032-17712152 2.60e-04 22_[+3(7.28e-06)]_10_[+3(7.28e-06)]_\ 4_[+3(7.28e-06)]_60 chrX:2608609-2608729 4.44e-06 [+1(1.70e-05)]_2_[+3(7.28e-06)]_6_\ [+1(5.49e-05)]_11_[+4(8.44e-06)]_69 chrX:13089514-13089634 2.16e-06 73_[+4(8.44e-06)]_7_[+3(7.28e-06)]_\ 24 chrX:16216623-16216743 5.00e-04 7_[+3(7.28e-06)]_45_[+3(7.28e-06)]_\ 52 chrX:19578348-19578468 8.45e-06 15_[+3(4.40e-05)]_20_[+2(3.24e-05)]_\ 10_[+3(9.90e-05)]_51 chr3L:17759211-17759331 2.56e-06 12_[+3(1.17e-05)]_27_[+3(7.28e-06)]_\ 16_[+3(7.28e-06)]_41 chr3L:5984201-5984321 3.73e-07 56_[+4(3.59e-05)]_31_[+2(4.19e-06)]_\ 4_[+2(1.11e-05)]_5 chr2R:9293464-9293584 2.26e-09 56_[+3(7.28e-06)]_2_[+5(1.44e-05)]_\ 5_[+1(4.19e-06)]_33 chr2R:25012047-25012167 2.58e-03 60_[+3(1.60e-05)]_52 chrX:19552683-19552803 9.11e-07 38_[+1(4.19e-06)]_4_[+1(4.19e-06)]_\ 21_[+5(5.56e-05)]_33 chrX:7102060-7102180 3.91e-08 29_[+3(1.60e-05)]_4_[+3(7.28e-06)]_\ 9_[+4(6.23e-05)]_1_[+4(8.44e-06)]_1_[+3(7.28e-06)]_13_[+1(1.27e-05)]_1_\ [+4(6.23e-05)]_6 chr2L:12083413-12083533 1.47e-06 15_[+4(1.58e-06)]_4_[+3(7.28e-06)]_\ 2_[+1(9.67e-05)]_3_[+3(7.28e-06)]_10_[+3(7.28e-06)]_46 chr3L:17562364-17562484 4.39e-04 3_[+3(7.28e-06)]_4_[+3(7.28e-06)]_4_\ [+3(7.28e-06)]_4_[+3(7.28e-06)]_73 chr2L:6960273-6960393 1.11e-01 120 chr3R:7304599-7304719 3.39e-06 63_[+3(7.28e-06)]_4_[+3(7.28e-06)]_\ 12_[+1(8.65e-05)]_17 chrX:8724973-8725093 6.43e-07 41_[+1(4.19e-06)]_4_[+1(4.19e-06)]_\ 45_[+5(2.11e-05)]_6 chrX:4234585-4234705 6.56e-07 18_[+2(1.11e-05)]_15_[+1(4.19e-06)]_\ 4_[+1(4.19e-06)]_22_[+1(4.19e-06)]_3_[+5(5.56e-05)]_18 chr3R:8134727-8134847 8.29e-06 52_[+2(1.11e-05)]_1_[+1(9.67e-05)]_\ 2_[+2(4.19e-06)]_41 chrX:8211233-8211353 1.74e-06 2_[+5(2.11e-05)]_22_[+1(4.19e-06)]_\ 4_[+1(4.19e-06)]_5_[+2(1.82e-05)]_55 chr3L:9471668-9471788 2.07e-06 31_[+2(1.11e-05)]_63_[+1(4.19e-06)]_\ 10 chrX:6642141-6642261 1.12e-05 30_[+4(8.44e-06)]_4_[+3(7.28e-06)]_\ [+1(7.17e-05)]_2_[+3(7.28e-06)]_52 chr3R:4885897-4886017 2.52e-06 17_[+2(1.82e-05)]_9_[+1(4.19e-06)]_\ 78 chr3R:31932499-31932619 6.93e-07 25_[+4(1.58e-06)]_17_[+3(7.28e-06)]_\ 4_[+3(7.28e-06)]_4_[+3(7.28e-06)]_38 chr2L:6956864-6956984 6.34e-07 47_[+3(7.28e-06)]_3_[+2(1.11e-05)]_\ 54 chr3L:13925148-13925268 1.77e-07 31_[+1(4.19e-06)]_16_[+2(1.11e-05)]_\ 57 chr2L:9763285-9763405 9.90e-01 120 chr3L:19871838-19871958 3.23e-04 68_[+3(7.28e-06)]_44 chrX:1495313-1495433 1.44e-01 120 chr2R:13623001-13623121 4.15e-05 18_[+2(3.24e-05)]_94 chr3L:12681295-12681415 2.85e-06 35_[+1(1.27e-05)]_2_[+3(7.28e-06)]_\ 12_[+4(3.13e-05)]_47 chr3L:19062461-19062581 2.33e-06 3_[+2(3.24e-05)]_10_[+2(4.19e-06)]_\ 9_[+1(4.19e-06)]_74 chr3L:5937527-5937647 3.22e-07 56_[+4(3.13e-06)]_6_[+3(7.28e-06)]_\ 4_[+3(7.28e-06)]_10_[+3(7.28e-06)]_12 chr3R:29935835-29935955 2.60e-01 120 chr3R:8818497-8818617 5.50e-04 52_[+3(7.28e-06)]_6_[+1(7.17e-05)]_\ 11_[+3(7.28e-06)]_27 chr2L:5372090-5372210 2.12e-08 35_[+1(4.19e-06)]_19_[+5(7.87e-06)]_\ [+2(4.19e-06)]_42 chrX:21018002-21018122 4.87e-05 66_[+3(7.28e-06)]_10_[+3(7.28e-06)]_\ 28 chr2R:17851201-17851321 1.90e-06 41_[+5(3.17e-05)]_3_[+2(3.24e-05)]_\ 51_[+2(1.11e-05)]_1 chrX:8770907-8771027 3.81e-06 29_[+2(1.11e-05)]_10_[+2(1.11e-05)]_\ 65 chr2R:20957428-20957548 1.04e-03 48_[+3(7.28e-06)]_14_[+3(7.28e-06)]_\ 42 chr2L:21681457-21681577 4.04e-03 43_[+3(7.28e-06)]_69 chr3L:3022916-3023036 1.00e-05 73_[+2(1.11e-05)]_3_[+1(3.82e-05)]_\ 1_[+2(1.11e-05)]_19 chr3L:22199904-22200024 4.46e-08 1_[+5(3.91e-06)]_55_[+1(4.19e-06)]_\ 4_[+1(9.16e-05)]_36 chr3L:391522-391642 2.62e-05 26_[+3(7.28e-06)]_4_[+3(7.28e-06)]_\ 4_[+3(7.28e-06)]_62 chr2L:7821679-7821799 3.81e-04 103_[+3(7.28e-06)]_9 chr3R:6646955-6647075 2.13e-01 120 chrX:17398105-17398225 8.64e-08 2_[+4(1.89e-05)]_33_[+2(1.11e-05)]_\ 3_[+1(4.19e-06)]_10_[+1(8.44e-06)]_5_[+2(4.19e-06)]_27 chr3L:20752967-20753087 1.60e-07 24_[+1(4.19e-06)]_3_[+5(4.89e-05)]_\ 11_[+1(4.19e-06)]_58 chr2L:4730983-4731103 1.76e-08 57_[+5(3.91e-06)]_4_[+5(7.87e-06)]_\ 5_[+1(4.19e-06)]_30 chr3L:6792567-6792687 5.02e-05 79_[+4(3.13e-05)]_33 chrX:7102293-7102413 4.54e-03 16_[+4(3.13e-05)]_96 chr2L:7388124-7388244 1.06e-03 44_[+3(7.28e-06)]_2_[+3(9.90e-05)]_\ 58 chr2R:14503853-14503973 3.47e-05 88_[+2(1.11e-05)]_15_[+1(1.70e-05)]_\ 1 chr2L:9279417-9279537 2.20e-07 41_[+2(4.19e-06)]_3_[+1(4.19e-06)]_\ 10_[+1(4.19e-06)]_42 chrX:13089713-13089833 2.02e-01 120 chrX:8211441-8211561 2.27e-01 120 chr2L:13836070-13836190 8.92e-08 8_[+1(4.19e-06)]_10_[+1(4.19e-06)]_\ 51_[+5(3.91e-06)]_27 chr3R:4311269-4311389 6.15e-01 120 chrX:5329393-5329513 9.06e-01 120 chr2L:15272082-15272202 6.81e-01 120 chr3R:11492049-11492169 5.61e-07 23_[+3(7.28e-06)]_16_[+3(7.28e-06)]_\ 4_[+4(1.37e-05)]_53 chr3L:3983537-3983657 8.35e-01 120 chr3R:10626171-10626291 9.44e-01 120 chrX:15475554-15475674 9.65e-01 120 chr3R:16827233-16827353 9.71e-09 29_[+4(1.58e-06)]_28_[+3(1.60e-05)]_\ 4_[+3(6.54e-05)]_[+1(1.70e-05)]_27 chrX:14234210-14234330 7.37e-01 120 chr3L:6969128-6969248 5.87e-01 120 chr2L:20592734-20592854 6.66e-07 25_[+5(2.11e-05)]_32_[+2(1.11e-05)]_\ 4_[+2(1.11e-05)]_3_[+1(4.19e-06)]_24 chrX:5966035-5966155 9.93e-01 120 chr2R:15322278-15322398 8.03e-01 120 chr2L:16271151-16271271 9.65e-01 120 chr3R:7606929-7607049 4.47e-09 13_[+5(2.11e-05)]_47_[+4(1.37e-05)]_\ 3_[+1(4.19e-06)]_11_[+2(3.93e-05)]_14 chrX:5611796-5611916 3.68e-05 22_[+4(4.03e-05)]_61_[+3(7.28e-06)]_\ 10_[+3(1.17e-05)]_3 chrX:8419771-8419891 3.19e-06 41_[+3(1.60e-05)]_16_[+2(3.24e-05)]_\ 47 chr2L:13783720-13783840 9.74e-01 120 chr3R:21134105-21134225 1.00e+00 120 chr3R:24318581-24318701 9.99e-01 120 chr3L:3449802-3449922 4.73e-01 120 chr2R:11964728-11964848 5.03e-06 35_[+2(1.11e-05)]_4_[+2(4.19e-06)]_\ 16_[+2(1.11e-05)]_41 chrX:7968410-7968530 8.99e-01 120 chr3R:6657657-6657777 9.78e-01 120 chr3R:19643558-19643678 9.21e-05 73_[+2(3.24e-05)]_11_[+5(4.24e-05)]_\ 20 chr2R:10123557-10123677 9.76e-01 120 chr3R:4400138-4400258 3.67e-01 120 chr2R:20668036-20668156 4.31e-03 88_[+3(1.60e-05)]_24 chr3L:10847907-10848027 9.86e-01 120 chr3R:5660173-5660293 3.42e-01 120 chrX:7968610-7968730 9.99e-01 120 chr3L:11278760-11278880 5.29e-01 120 chrX:17712231-17712351 1.80e-01 120 chrX:14247419-14247539 4.65e-01 120 chr3R:27274641-27274761 7.49e-01 120 chrX:7000946-7001066 1.72e-01 120 chrX:3396961-3397081 6.92e-01 120 chr3L:16602819-16602939 9.87e-01 120 chrX:17740876-17740996 3.37e-08 55_[+1(4.19e-06)]_49_[+3(6.54e-05)] chrX:19557044-19557164 5.29e-08 23_[+3(7.28e-06)]_12_[+2(1.82e-05)]_\ 4_[+2(1.11e-05)]_10_[+5(3.17e-05)]_39 chr2R:22420674-22420794 9.78e-01 120 chr2R:11970353-11970473 9.29e-01 120 chr3L:19446749-19446869 6.67e-01 120 chr3L:6969331-6969451 6.47e-01 120 chr2R:25012250-25012370 5.93e-01 120 chr2L:6967709-6967829 7.15e-01 120 chr2R:7972326-7972446 8.50e-01 120 chrX:3367410-3367530 9.91e-01 120 chr3R:13799738-13799858 1.00e+00 120 chr3R:17394806-17394926 9.99e-01 120 chr3L:13964997-13965117 7.69e-01 120 chr3L:7510877-7510997 9.81e-01 120 chr2R:13015257-13015377 8.67e-01 120 chr3L:4254308-4254428 2.89e-01 120 chr3R:17540259-17540379 9.92e-01 120 chr2R:5122263-5122383 2.15e-01 120 chrX:7323810-7323930 1.81e-01 120 chr3R:29772298-29772418 4.69e-01 120 chr3R:27938068-27938188 9.95e-01 120 chr3R:25123351-25123471 7.58e-01 120 chrX:7104611-7104731 9.39e-01 120 chr2L:3779216-3779336 9.36e-01 120 chr2R:8907102-8907222 7.76e-01 120 chr3L:14978145-14978265 9.90e-01 120 chr3L:16129369-16129489 6.98e-01 120 chr3R:31704663-31704783 9.87e-01 120 chr2L:6967973-6968093 9.75e-01 120 chr3R:10641365-10641485 8.87e-01 120 chr3L:21598349-21598469 4.53e-05 57_[+2(4.19e-06)]_18_[+2(1.82e-05)]_\ 29 chr3R:18366408-18366528 2.06e-01 120 chr3R:19875728-19875848 2.52e-03 25_[+1(7.17e-05)]_87 chrX:18525062-18525182 9.98e-01 120 chr2R:22911769-22911889 1.29e-01 120 chr2R:12991304-12991424 9.61e-01 120 chr2R:5128315-5128435 1.70e-01 120 chr2R:14645097-14645217 1.20e-02 120 chr3L:13929266-13929386 7.33e-01 120 chr3L:6743432-6743552 9.99e-01 120 chr2R:13224779-13224899 9.68e-01 120 chr2L:3805362-3805482 1.00e+00 120 chr3R:27988913-27989033 4.87e-01 120 chr3L:11822433-11822553 9.98e-01 120 chrX:16275897-16276017 3.00e-01 120 chr3L:19062665-19062785 5.33e-03 9_[+5(4.24e-05)]_103 chr2L:8415526-8415646 1.15e-01 120 chr3L:6752853-6752973 9.95e-01 120 chr3R:24817185-24817305 1.00e+00 120 chr2R:17789360-17789480 4.72e-02 120 chr3R:25184104-25184224 6.17e-01 120 chr2L:19285659-19285779 9.77e-01 120 chr2R:21662448-21662568 9.60e-02 120 chrX:2011736-2011856 9.17e-01 120 chr3R:21594536-21594656 6.30e-01 120 chr2L:16743131-16743251 5.55e-02 44_[+4(3.59e-05)]_68 chr3R:9938578-9938698 9.42e-01 120 chr3L:11336532-11336652 7.47e-02 17_[+3(4.84e-05)]_95 chr3L:19636907-19637027 1.00e+00 120 chr3L:11429882-11430002 6.61e-01 120 chr2R:9109687-9109807 9.78e-01 120 chr3R:14308826-14308946 1.34e-03 38_[+5(3.17e-05)]_74 chr2R:12173467-12173587 1.15e-01 120 chr2R:16178603-16178723 7.97e-01 120 chr3R:5413161-5413281 7.20e-01 120 chr2R:9087711-9087831 2.33e-01 6_[+3(5.56e-05)]_106 chrX:457883-458003 6.57e-01 120 chr2L:13203490-13203610 8.62e-01 120 chrX:12595864-12595984 9.86e-01 120 chr3L:5857072-5857192 2.15e-01 120 chr3R:21187072-21187192 9.87e-01 120 chr3R:29772502-29772622 1.00e+00 120 chr3R:5636891-5637011 1.00e+00 120 chr3L:9367008-9367128 1.97e-01 120 chr3R:16209084-16209204 1.00e+00 120 chr3L:6059200-6059320 1.88e-03 2_[+4(1.89e-05)]_11_[+3(2.76e-05)]_\ 91 chr3L:11291584-11291704 9.46e-01 120 chr2R:22886393-22886513 7.63e-01 120 chr2L:11417613-11417733 9.67e-01 120 chr3L:15321080-15321200 1.00e+00 120 chr2L:4847585-4847705 9.73e-01 120 chr2L:14441059-14441179 8.18e-01 120 chr3R:17718488-17718608 4.76e-01 120 chr2R:12174548-12174668 6.57e-01 120 chr3R:23300757-23300877 8.32e-01 120 chr3L:21047108-21047228 9.98e-01 120 chr3R:23293558-23293678 9.85e-01 120 chr3L:18349444-18349564 3.73e-01 72_[+3(6.28e-05)]_40 chr3L:11074635-11074755 9.96e-01 120 chr2R:21323665-21323785 1.01e-01 10_[+5(9.14e-05)]_102 chr3L:6981953-6982073 1.00e+00 120 chrX:7901497-7901617 9.99e-01 120 chr2R:20327042-20327162 4.36e-01 120 chr3R:5861571-5861691 6.44e-02 120 chr2L:12542130-12542250 1.00e+00 120 chr3L:17016339-17016459 8.91e-01 120 chr3L:4262485-4262605 2.68e-03 47_[+3(1.17e-05)]_65 chr3R:18393567-18393687 3.35e-01 120 chrX:2136491-2136611 5.25e-02 120 chr2R:24174678-24174798 1.00e+00 120 chr2L:11338369-11338489 1.00e+00 120 chr3L:6743232-6743352 9.99e-01 120 chr2L:9494848-9494968 5.87e-01 120 chr2L:3477306-3477426 2.33e-01 120 chrX:13756999-13757119 9.99e-01 120 chrX:18899903-18900023 9.89e-01 120 chr3R:26052323-26052443 9.89e-01 120 chr2R:15034833-15034953 4.43e-01 120 chr3R:15250625-15250745 9.92e-01 120 chr3L:17016136-17016256 1.27e-01 120 chr3L:3855335-3855455 9.02e-01 120 chrX:12611758-12611878 1.29e-01 120 chr2R:22690295-22690415 9.79e-01 120 chr3L:19898915-19899035 8.74e-01 120 chr3R:21856595-21856715 1.23e-01 5_[+4(1.37e-05)]_107 chrX:16320441-16320561 3.76e-01 120 chr2L:3776009-3776129 7.14e-01 120 chr2L:15061463-15061583 6.92e-01 120 chr2L:11189212-11189332 8.35e-01 120 chr2L:15248776-15248896 3.50e-01 120 chr2L:20120641-20120761 8.79e-01 120 chr2R:9544890-9545010 4.91e-01 120 chrX:15890256-15890376 8.69e-01 120 chr3R:12997862-12997982 9.61e-01 120 chrX:7728392-7728512 4.18e-01 120 chr3L:12803831-12803951 1.00e+00 120 chrX:11570410-11570530 1.00e+00 120 chr2R:15201388-15201508 6.41e-01 120 chr2R:15835683-15835803 9.98e-01 120 chr3R:18311134-18311254 9.34e-01 120 chr3R:8349626-8349746 4.67e-02 72_[+3(2.76e-05)]_40 chr2L:18305174-18305294 1.00e+00 120 chr3L:14613793-14613913 6.57e-01 120 chr3L:15787501-15787621 1.00e+00 120 chr2L:16703843-16703963 4.75e-01 120 chr3L:10661067-10661187 9.99e-01 120 chrX:13258809-13258929 7.66e-01 120 chr3L:19834272-19834392 3.05e-02 35_[+2(4.34e-05)]_77 chrX:21322796-21322916 9.94e-01 120 chr3R:12630488-12630608 1.00e+00 120 chr3R:19836742-19836862 1.91e-04 23_[+3(7.28e-06)]_31_[+3(2.03e-05)]_\ 50 chr3L:16061012-16061132 9.36e-01 120 chr2L:11528392-11528512 9.12e-01 120 chrX:19865795-19865915 4.68e-01 120 chr2L:1462151-1462271 6.05e-01 120 chr3L:3543044-3543164 2.03e-01 120 chr2L:13833129-13833249 9.70e-01 120 chr2R:11204344-11204464 9.66e-01 120 chr2L:14359025-14359145 9.78e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n09.farnam.hpc.yale.internal ********************************************************************************