******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG13624.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:13952632-13952752 1.0000 120 chrX:22481376-22481496 1.0000 120 chrX:8093239-8093359 1.0000 120 chr3L:17529577-17529697 1.0000 120 chr2L:3480000-3480120 1.0000 120 chrX:6684223-6684343 1.0000 120 chr3L:630741-630861 1.0000 120 chrX:13749219-13749339 1.0000 120 chr3L:5655242-5655362 1.0000 120 chr3R:21581815-21581935 1.0000 120 chr2R:8149942-8150062 1.0000 120 chr3R:9883633-9883753 1.0000 120 chr2R:7805447-7805567 1.0000 120 chr3R:11759606-11759726 1.0000 120 chr3R:27129850-27129970 1.0000 120 chr2R:17721667-17721787 1.0000 120 chrX:13752684-13752804 1.0000 120 chrX:5880221-5880341 1.0000 120 chr3R:14051619-14051739 1.0000 120 chr3L:4221882-4222002 1.0000 120 chr2R:18445835-18445955 1.0000 120 chr3R:9874256-9874376 1.0000 120 chr3L:4411612-4411732 1.0000 120 chr2L:16273646-16273766 1.0000 120 chr2L:3476524-3476644 1.0000 120 chr3L:20519320-20519440 1.0000 120 chr2R:10838691-10838811 1.0000 120 chr3L:11691540-11691660 1.0000 120 chr2R:21505913-21506033 1.0000 120 chr3R:28333027-28333147 1.0000 120 chrX:21388899-21389019 1.0000 120 chr2R:8948999-8949119 1.0000 120 chr3R:25033383-25033503 1.0000 120 chrX:9155735-9155855 1.0000 120 chr3L:10226135-10226255 1.0000 120 chr2L:19166140-19166260 1.0000 120 chr3R:9873120-9873240 1.0000 120 chrX:3764373-3764493 1.0000 120 chrX:18789420-18789540 1.0000 120 chr3R:9939466-9939586 1.0000 120 chr2R:18442885-18443005 1.0000 120 chr3R:30013325-30013445 1.0000 120 chr3L:13356433-13356553 1.0000 120 chr3R:23156833-23156953 1.0000 120 chr2L:10264253-10264373 1.0000 120 chr2L:2804961-2805081 1.0000 120 chr2L:19576935-19577055 1.0000 120 chr3R:11759037-11759157 1.0000 120 chr3R:8979992-8980112 1.0000 120 chr2R:9549904-9550024 1.0000 120 chr2L:821369-821489 1.0000 120 chr3R:14477244-14477364 1.0000 120 chr3R:4951921-4952041 1.0000 120 chr3L:7116066-7116186 1.0000 120 chr2R:8947342-8947462 1.0000 120 chr3R:29858907-29859027 1.0000 120 chr3L:548998-549118 1.0000 120 chr2L:12046963-12047083 1.0000 120 chr2R:23906951-23907071 1.0000 120 chr2R:18531619-18531739 1.0000 120 chr2L:12541468-12541588 1.0000 120 chr3R:4803725-4803845 1.0000 120 chrX:3414776-3414896 1.0000 120 chr3R:21434229-21434349 1.0000 120 chr2R:9551865-9551985 1.0000 120 chr3R:21618557-21618677 1.0000 120 chr3R:27660683-27660803 1.0000 120 chr2R:8106341-8106461 1.0000 120 chr2R:19267982-19268102 1.0000 120 chr3L:3083318-3083438 1.0000 120 chr3R:23110785-23110905 1.0000 120 chr3L:9456239-9456359 1.0000 120 chr3R:10330153-10330273 1.0000 120 chr2R:11630102-11630222 1.0000 120 chr3R:9529383-9529503 1.0000 120 chr2R:10617672-10617792 1.0000 120 chr3L:224304-224424 1.0000 120 chrX:17652551-17652671 1.0000 120 chr3R:25968674-25968794 1.0000 120 chr2L:16886724-16886844 1.0000 120 chr3R:21582015-21582135 1.0000 120 chrX:18137006-18137126 1.0000 120 chr3L:11708357-11708477 1.0000 120 chr2R:9814164-9814284 1.0000 120 chr3R:15328218-15328338 1.0000 120 chr3R:11220036-11220156 1.0000 120 chrX:10739169-10739289 1.0000 120 chr2L:21573552-21573672 1.0000 120 chr3L:21346830-21346950 1.0000 120 chr3R:26966912-26967032 1.0000 120 chrX:6279377-6279497 1.0000 120 chrX:3862428-3862548 1.0000 120 chrX:3378698-3378818 1.0000 120 chr3L:9349470-9349590 1.0000 120 chr3L:835620-835740 1.0000 120 chrX:8112859-8112979 1.0000 120 chr3R:15935077-15935197 1.0000 120 chr2L:9203545-9203665 1.0000 120 chr2L:13296291-13296411 1.0000 120 chr3R:21190886-21191006 1.0000 120 chr2R:16011545-16011665 1.0000 120 chr2L:20078964-20079084 1.0000 120 chr3L:140222-140342 1.0000 120 chrX:10184819-10184939 1.0000 120 chr3L:14554086-14554206 1.0000 120 chr3R:16353293-16353413 1.0000 120 chrX:3379474-3379594 1.0000 120 chr3L:17843037-17843157 1.0000 120 chr3L:5810028-5810148 1.0000 120 chr3R:21268699-21268819 1.0000 120 chr3L:11400902-11401022 1.0000 120 chr2L:16284393-16284513 1.0000 120 chr2L:1723671-1723791 1.0000 120 chr2L:19542562-19542682 1.0000 120 chr3L:16040524-16040644 1.0000 120 chrX:19146507-19146627 1.0000 120 chr2R:9194901-9195021 1.0000 120 chrX:10365844-10365964 1.0000 120 chrX:11557652-11557772 1.0000 120 chr2L:17204011-17204131 1.0000 120 chr3R:27652455-27652575 1.0000 120 chr2L:6921238-6921358 1.0000 120 chr2L:559555-559675 1.0000 120 chr3L:20198141-20198261 1.0000 120 chr3L:18786452-18786572 1.0000 120 chr3R:31630494-31630614 1.0000 120 chr2R:17435839-17435959 1.0000 120 chr2L:4973940-4974060 1.0000 120 chr2L:6481503-6481623 1.0000 120 chrX:16803347-16803467 1.0000 120 chr2R:10429884-10430004 1.0000 120 chr3R:28811215-28811335 1.0000 120 chr2R:9136805-9136925 1.0000 120 chr2R:11637639-11637759 1.0000 120 chr2R:9439140-9439260 1.0000 120 chr2L:21629366-21629486 1.0000 120 chr2L:2217242-2217362 1.0000 120 chr3R:16356889-16357009 1.0000 120 chrX:8493620-8493740 1.0000 120 chr3R:14063336-14063456 1.0000 120 chr2R:13038616-13038736 1.0000 120 chr2L:8894351-8894471 1.0000 120 chr3L:6955433-6955553 1.0000 120 chrX:2254322-2254442 1.0000 120 chr3L:616984-617104 1.0000 120 chrX:6756517-6756637 1.0000 120 chr3R:25215217-25215337 1.0000 120 chr3R:21853723-21853843 1.0000 120 chr3R:31608255-31608375 1.0000 120 chr2R:13015984-13016104 1.0000 120 chr2R:8725628-8725748 1.0000 120 chr3R:31571976-31572096 1.0000 120 chr3L:3225456-3225576 1.0000 120 chr2R:13587375-13587495 1.0000 120 chrX:948340-948460 1.0000 120 chr2L:5225743-5225863 1.0000 120 chr3R:24050701-24050821 1.0000 120 chr3L:20518288-20518408 1.0000 120 chrX:636810-636930 1.0000 120 chrX:6661398-6661518 1.0000 120 chrX:19605187-19605307 1.0000 120 chr3R:18412537-18412657 1.0000 120 chr3R:24598755-24598875 1.0000 120 chr3R:9878118-9878238 1.0000 120 chrX:19168218-19168338 1.0000 120 chr3R:4381230-4381350 1.0000 120 chr3R:23337427-23337547 1.0000 120 chrX:14826076-14826196 1.0000 120 chr2L:16520128-16520248 1.0000 120 chr2R:24962548-24962668 1.0000 120 chr2L:207330-207450 1.0000 120 chrX:13612027-13612147 1.0000 120 chr2R:17590740-17590860 1.0000 120 chr3R:14575911-14576031 1.0000 120 chrX:793072-793192 1.0000 120 chrX:20251235-20251355 1.0000 120 chr3L:15498904-15499024 1.0000 120 chr2R:8122871-8122991 1.0000 120 chrX:9319190-9319310 1.0000 120 chr2L:10246998-10247118 1.0000 120 chr2L:17784745-17784865 1.0000 120 chr2R:9712321-9712441 1.0000 120 chr3L:698891-699011 1.0000 120 chr2R:16027907-16028027 1.0000 120 chrX:11137721-11137841 1.0000 120 chr2L:1654344-1654464 1.0000 120 chr3L:3374171-3374291 1.0000 120 chr2R:18440146-18440266 1.0000 120 chr2R:21090953-21091073 1.0000 120 chr3L:15554099-15554219 1.0000 120 chr3L:3149171-3149291 1.0000 120 chr3R:27925266-27925386 1.0000 120 chr2R:21091809-21091929 1.0000 120 chr2R:24986010-24986130 1.0000 120 chr3R:11243287-11243407 1.0000 120 chr3L:9899416-9899536 1.0000 120 chr2R:16104643-16104763 1.0000 120 chr2R:18834693-18834813 1.0000 120 chrX:6179590-6179710 1.0000 120 chr2L:19140990-19141110 1.0000 120 chr3R:25888443-25888563 1.0000 120 chr3R:24518215-24518335 1.0000 120 chr3R:27559083-27559203 1.0000 120 chrX:9106600-9106720 1.0000 120 chr3R:6382933-6383053 1.0000 120 chr3R:21073303-21073423 1.0000 120 chrX:3538909-3539029 1.0000 120 chr3L:7359864-7359984 1.0000 120 chr2L:19571926-19572046 1.0000 120 chrX:13845891-13846011 1.0000 120 chr2R:8030972-8031092 1.0000 120 chrX:2184656-2184776 1.0000 120 chrX:10764322-10764442 1.0000 120 chr2L:2999232-2999352 1.0000 120 chr2R:21141872-21141992 1.0000 120 chr3L:5765474-5765594 1.0000 120 chrX:17738311-17738431 1.0000 120 chr3R:19903406-19903526 1.0000 120 chrX:16781197-16781317 1.0000 120 chr3L:648296-648416 1.0000 120 chr2L:6343600-6343720 1.0000 120 chrX:8193215-8193335 1.0000 120 chr3R:29503502-29503622 1.0000 120 chr2R:20562318-20562438 1.0000 120 chr2L:21310837-21310957 1.0000 120 chr2R:24293580-24293700 1.0000 120 chrX:11925359-11925479 1.0000 120 chr2L:13512284-13512404 1.0000 120 chr3L:9367664-9367784 1.0000 120 chr2R:23988446-23988566 1.0000 120 chrX:19665974-19666094 1.0000 120 chr2R:23702400-23702520 1.0000 120 chr2L:8239811-8239931 1.0000 120 chrX:18366162-18366282 1.0000 120 chr2R:17444630-17444750 1.0000 120 chr3L:5813172-5813292 1.0000 120 chrX:13332974-13333094 1.0000 120 chr2L:18708038-18708158 1.0000 120 chr2L:8982662-8982782 1.0000 120 chr3R:9874457-9874577 1.0000 120 chr2L:10437482-10437602 1.0000 120 chr2R:17586073-17586193 1.0000 120 chr3R:24226913-24227033 1.0000 120 chr2L:14394799-14394919 1.0000 120 chr2R:9577989-9578109 1.0000 120 chrX:8409219-8409339 1.0000 120 chrX:11379246-11379366 1.0000 120 chr3R:12985980-12986100 1.0000 120 chr3R:23228786-23228906 1.0000 120 chr2R:17535633-17535753 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG13624/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG13624.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.282 C 0.219 G 0.218 T 0.282 Background letter frequencies (from file dataset with add-one prior applied): A 0.282 C 0.219 G 0.218 T 0.282 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGCGCAGT MEME-1 width = 8 sites = 135 llr = 992 E-value = 4.8e-057 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCGCAGT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :2:::721 pos.-specific C ::a:72:3 probability G 18:a::6: matrix T 9:::3116 bits 2.2 ** 2.0 ** 1.8 ** 1.5 ** Relative 1.3 **** Entropy 1.1 ***** (10.6 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCGCAGT consensus A TCAC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCAGT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:7359864-7359984 37 1.11e-05 AAAATTCTAA TGCGCAGT AGCAGTACTT chr2R:9712321-9712441 71 1.11e-05 AAAAATCTAG TGCGCAGT GCGCTCATAG chr2R:17435839-17435959 100 1.11e-05 TGCACACAAG TGCGCAGT GCGAAGCGAA chr3R:15935077-15935197 92 1.11e-05 TCATTACTGG TGCGCAGT TGTTGTTTCC chr3L:9349470-9349590 42 1.11e-05 GCTTATGAAC TGCGCAGT CGCTTTAGGT chr2R:18531619-18531739 27 1.11e-05 TGGAGAAAAC TGCGCAGT TTCAAAATAT chr2L:10264253-10264373 76 1.11e-05 ATTGTTCTAA TGCGCAGT AAGGCCTTGC chr2R:10838691-10838811 76 1.11e-05 TTTTTTTCAC TGCGCAGT TGGCCTTAGT chr3R:27129850-27129970 45 1.11e-05 AGCCCAAAAC TGCGCAGT TCGGCAGGtt chr3L:5655242-5655362 30 1.11e-05 TTTTTTATAC TGCGCAGT TCTTTTTTTG chr2L:3480000-3480120 35 1.11e-05 TTTAAGAAAC TGCGCAGT TGGGAAACGA chrX:636810-636930 53 1.98e-05 AAGTGGAAAC TGCGCAGC AGGGAAGCCA chr2R:13015984-13016104 79 1.98e-05 GGCAACTTTT TGCGCAGC GAAATTTCAT chr2L:16284393-16284513 110 1.98e-05 CCCAAAAATT TGCGCAGC AGA chr3L:5810028-5810148 46 1.98e-05 GCCAGACATT TGCGCAGC AGATAAGCCC chr3L:14554086-14554206 89 1.98e-05 GCTGATAAAC TGCGCAGC ATAAACTTAA chr3R:21190886-21191006 45 1.98e-05 AAGAAGAAAT TGCGCAGC AAAAATATTC chr3L:21346830-21346950 14 1.98e-05 TTCCGATAAC TGCGCAGC AGCTTCTTGC chrX:10739169-10739289 71 1.98e-05 AATGAAGAAC TGCGCAGC ACAGGCCAAC chr3R:21434229-21434349 32 1.98e-05 CTCGCGCAGC TGCGCAGC TTGTCTAATT chr3R:11759037-11759157 83 1.98e-05 AGAAAATTAT TGCGCAGC AAATGAAATT chr2L:16273646-16273766 77 1.98e-05 TGCGTGAAAT TGCGCAGC AAAAATGCCG chr3L:630741-630861 56 1.98e-05 AGGCGCAATA TGCGCAGC TTCAATACAG chrX:793072-793192 97 4.28e-05 GAAATGGATC TGCGCCGT GAGCTTCTGG chr3R:21853723-21853843 55 4.28e-05 TCAACGTGCG TGCGTAGT TACTACTACG chr2R:11637639-11637759 105 4.28e-05 ACACCTATAA TGCGTAGT AGAGAGTC chr2L:1723671-1723791 92 4.28e-05 AATCGCCAAT TGCGCCGT TCCCGCCGAG chr3R:21618557-21618677 84 4.28e-05 AAATTGCTGC TGCGTAGT AATTTCACGA chr3R:4803725-4803845 44 4.28e-05 CCCAAAGAAG TGCGTAGT TTCAACACTT chr3L:7116066-7116186 65 4.28e-05 ATCAACGAAA TGCGTAGT TTGCTGGCGC chr3L:20519320-20519440 71 4.28e-05 ACAAGCTTAA TGCGTAGT TTAAATCTTT chr3L:4411612-4411732 2 4.28e-05 C TGCGTAGT ATTTGCAAGT chr3R:9874256-9874376 28 4.28e-05 TTTTTTTAAC TGCGTAGT ATTTTATGCT chrX:5880221-5880341 87 4.28e-05 GCTACTTTAT TGCGCCGT TTGTTTATGT chr2R:17721667-17721787 79 4.28e-05 tggaatCAAC TGCGTAGT AGTCAAAAGT chr2R:7805447-7805567 21 4.28e-05 ATAAACGAAC TGCGTAGT TTGTGAAATT chr3R:21581815-21581935 45 4.28e-05 GAATTTCAGC TGCGTAGT TGAAAACGTA chrX:8093239-8093359 65 4.28e-05 AAAAGCAAAG TGCGTAGT TTTCGGGTAG chr2R:16104643-16104763 76 5.72e-05 TTGCCTTTGC TGCGCAAT ATGGCGGGTT chr2R:9439140-9439260 42 5.72e-05 CCGGCAATTG TGCGCAAT TACCCCAACA chr3L:20198141-20198261 21 5.72e-05 TTTTAATATG TGCGCAAT TGTCCAAAAA chr3R:16353293-16353413 28 5.72e-05 TTATACAAAT TGCGCAAT TATCAGGGGC chr2R:16011545-16011665 101 5.72e-05 TATCTGGAAG TGCGCAAT ATTTCCGAAT chr3L:9456239-9456359 84 5.72e-05 AGAAAACAAA TGCGCAAT AACAATAAAT chr3R:27660683-27660803 47 5.72e-05 TGTTTAGCGC TGCGCAAT AGATTGAGCT chr2R:8947342-8947462 77 5.72e-05 GTGCCGCCGC TGCGCAAT ACTTTTGTCA chr2R:9549904-9550024 28 5.72e-05 CCGCCTTTTG TGCGCAAT TCCCAGTCCC chrX:13749219-13749339 72 5.72e-05 GAAACTAAAC TGCGCAAT AGAAAATTCA chr3R:21073303-21073423 86 7.51e-05 AAGTTCTGGT TGCGCCGC CTGGGTGGTT chr3R:18412537-18412657 24 7.51e-05 GGGGTGAAAA TGCGTAGC GAAGAGATAG chr3R:16356889-16357009 42 7.51e-05 CTCCTCCAAG TGCGTAGC GTTTCGAGGC chrX:10365844-10365964 53 7.51e-05 TTATTCGAAC TGCGTAGC GTACAAGAAA chr2L:19166140-19166260 77 7.51e-05 TCATATAGAC TGCGTAGC Aagcaagagc chrX:16803347-16803467 39 1.01e-04 CTTTCTCCAC TGCGCAAC TAAATGGGCT chr2L:19542562-19542682 110 1.01e-04 GAACAAAAAC TACGCAGT AGT chr3L:140222-140342 67 1.01e-04 TACATTTTGC TGCGCAAC AAATTTTTGA chr2L:16886724-16886844 30 1.01e-04 TGAATTTAAA TACGCAGT ATTGTCAATA chr3R:8979992-8980112 16 1.01e-04 ATTCAATAAT TACGCAGT AAGTAGCGCC chr2R:18442885-18443005 57 1.01e-04 TTTTGGTTAC TACGCAGT TGTTGTTTAT chr3R:9873120-9873240 64 1.01e-04 GAGTGGGAAA TACGCAGT GCATTTTTCT chr2R:8149942-8150062 67 1.01e-04 TTGGGCGAAC TACGCAGT TGGGTTGGAG chr2R:9814164-9814284 106 1.12e-04 GCTGAAATAA TGCGCAGA AGCCTCG chr2R:19267982-19268102 54 1.12e-04 TAATTCTTTA TGCGCAGA GCTGGTTCAT chrX:3414776-3414896 41 1.12e-04 TTTATGTAAC TGCGCAGA TAGATTGTAt chr2L:6343600-6343720 34 1.46e-04 AGCTCAAAAA TGCGTCGT TCAGGTTCGC chr2R:8030972-8031092 85 1.46e-04 GGTATGGTGG TGCGTCGT AGTATCCGTA chr2L:19571926-19572046 52 1.46e-04 GCCCAAAGAA TGCGCATT TAGCAGAGAC chr3R:24050701-24050821 74 1.46e-04 GTGGAAAAAT GGCGCAGT TAATCGGACA chrX:6756517-6756637 33 1.46e-04 CGCCGGCAAT TGCGCATT GTGAGACACG chrX:3379474-3379594 3 1.46e-04 AT TGCGTCGT GGTTGTTGGC chrX:9155735-9155855 84 1.46e-04 AGCAGTTAAT TGCGTCGT TTCTCCGCTA chrX:11379246-11379366 102 1.57e-04 TTTAAATCTA TACGCAGC TTACTATAAG chr3R:14477244-14477364 54 1.57e-04 CCACCTAACC TACGCAGC AGACGTGTCA chr2R:8948999-8949119 58 1.57e-04 CACAGGCAAC TACGCAGC AGAAACAATT chrX:13612027-13612147 107 1.87e-04 AAATAAAAAG TGCGCCAT TTACTT chr2R:24962548-24962668 61 1.87e-04 TTTCAGTGAC TGCGCCAT TTAAAGACCT chr3L:11400902-11401022 35 1.87e-04 CAAAGTGAAT TGCGTAAT TTATGCTGCG chr3R:10330153-10330273 53 1.87e-04 ACAGAACAAC TGCGTAAT AGAAGAAAAA chr2R:18445835-18445955 81 1.87e-04 GCAGCTCTGC TGCGTAAT AGATCCGTGA chr3L:5765474-5765594 40 2.25e-04 CGTGTGGCCA GGCGCAGC GCAGGTATCG chr2L:2999232-2999352 106 2.25e-04 AACGTAAAAG TGCGCATC GCCGGCT chr2R:18834693-18834813 30 2.25e-04 TCAGTTCGCC GGCGCAGC AAAATTGCAA chr3R:26966912-26967032 85 2.25e-04 GCTGGAAAAA TGCGCTGT AAATCGCCAG chr2L:21573552-21573672 54 2.25e-04 AGCAATGAAA TGCGTCGC ATTGGAGGCC chr3L:224304-224424 41 2.25e-04 CGCCAGAAAA TGCGTCGC AAGCTAAGAG chr2L:2804961-2805081 86 2.25e-04 AAAGTAGAAT TGCGCATC GCTTAAAACG chrX:22481376-22481496 77 2.25e-04 CTTTTTCAAT TGCGTCGC AGAATGaaac chr2R:17444630-17444750 41 2.77e-04 TTATCGCTTC TACGCCGT TTACACGTtt chr2R:8725628-8725748 41 2.77e-04 TTTTCGGAAC TGCGCCAC ACCAAAACAA chrX:3764373-3764493 24 2.77e-04 CGCTTTTCCT TACGCCGT CCTGTCATCT chr3R:11759606-11759726 81 3.00e-04 TTTTTTGCAA TGCGTAGA TAAAACCGCC chr2L:1654344-1654464 26 3.28e-04 ATTTTTCGAC TGCGCTGC CGGCGCCGCT chr3L:18786452-18786572 1 3.28e-04 . TACGCAAT AACATTTCCC chr3R:11220036-11220156 39 3.28e-04 GACCAAATGT TGCGCTGC CACGATGCCA chrX:18137006-18137126 15 3.28e-04 ACTTATTTTG TGCGCTGC TAATTTGTAG chr3L:17529577-17529697 19 3.28e-04 TCGTTTCTAA TACGCAAT TTCGCCACTA chrX:17738311-17738431 73 3.90e-04 CGCTGCGCGC TGCGCAAA TGTTTTGTAC chr2L:16520128-16520248 102 3.90e-04 TTATTCTAGC GGCGTAGT AAAAATTTTC chrX:19168218-19168338 105 3.90e-04 GTTGTTAATG TGCGCAAA ACAATGCT chr3R:28811215-28811335 73 3.90e-04 TATTGTGAAA TGCGCCTT GGCTTTGTTG chr2L:6921238-6921358 105 3.90e-04 TTCGTAAAAT TGCGTATT AGAAATCT chrX:18789420-18789540 57 3.90e-04 AGCCTCCCGC TGCGCAAA TTCTGGCTCC chr3L:10226135-10226255 51 3.90e-04 TAGAGAGGGC GGCGTAGT TGGCGCGCAT chr2R:9136805-9136925 75 4.38e-04 AATCGGTAAC TGCGTCAT TCGGGCGCCC chr3L:9899416-9899536 36 5.19e-04 TTCCATGCAG TGCGTTGT TGTATGGGAA chr3R:31608255-31608375 81 5.19e-04 GGTCGTTTTA TGCGTTGT ATTTATATTA chr2L:2217242-2217362 56 5.19e-04 CTAGTGTGTG TGCGCCTC TTCTTCTTGC chr3R:25968674-25968794 111 5.19e-04 TGTTTAAGAA TGCGTATC TA chr2R:10617672-10617792 69 5.19e-04 TTCCTTTCGC TACGCAGA AGATTTTTTA chr2R:13587375-13587495 85 5.97e-04 CGGTTCCTAT TACGTCGT CGATTGCATA chr3L:6955433-6955553 48 5.97e-04 TTTCAGCTTC TACGTCGT CAATAGAGCT chr3R:14063336-14063456 80 5.97e-04 AGTAAGCTGT GACGCAGT AGATCAAAAG chr2L:13296291-13296411 106 5.97e-04 ACGCGCAGAC GACGCAGT TTTCATA chr3L:4221882-4222002 60 5.97e-04 TAAGAGCAAC TACGCATT GCTCGGACTT chr3R:4381230-4381350 92 6.31e-04 AGTCGTGGCT TGCGCATA TCTAATTGCT chr3R:9878118-9878238 68 6.31e-04 CCAAGTCAGC TGCGCATA TCTTTTCCGT chr3R:21268699-21268819 45 6.31e-04 TCCAGATAAC TGCGCATA ATTACGTGTG chr3L:3083318-3083438 60 6.31e-04 TGGCTTTATT TGCGTCGA CCTGGAGTCG chr3R:24226913-24227033 40 6.81e-04 AGGGTTGCAT TGCGTTGC ATCTCGATGG chrX:18366162-18366282 37 6.81e-04 CAAGCTCTGC TACGCCAT AACTCTGCGC chr2R:23906951-23907071 26 6.81e-04 TAAAAACTAA TACGCCAT TCGGCGAATC chr3R:12985980-12986100 77 7.45e-04 TACCAAAAAT GGCGTCGT GATTTCCCAG chr3R:11243287-11243407 28 7.45e-04 TTTTTAAAGC GGCGCATT TTACTGTAAT chrX:11557652-11557772 31 7.45e-04 CAAAATCGGT GGCGCATT AGACGAGTTC chr2L:19576935-19577055 71 7.45e-04 GTACAGCAAC TGCGTAAA TTCAATAAAA chrX:13752684-13752804 64 7.45e-04 ATAACGGTAC TGCGTCTT GGAAATTGCA chr3R:24518215-24518335 105 8.05e-04 AATTTTTTAG TACGTCGC GAGTAAAA chrX:6179590-6179710 79 8.05e-04 ACATAACTAA TACGCTGT GTTTCTTTTC chr3L:17843037-17843157 94 8.05e-04 TGAAATAAAC GACGCAGC CACAATACAG chr2R:18440146-18440266 32 9.48e-04 CTCGGACTCG TGCGCTTT GCAATTTAAA chrX:14826076-14826196 110 1.08e-03 GTAGAGATGG GGCGCCAC TGC chrX:6279377-6279497 102 1.08e-03 CTAGCTGCAA TACGCAAA ATTGGGCATT chr3L:3149171-3149291 69 1.17e-03 CGTATATAAT TACGTCAT AAGAATTAAA chr2L:12046963-12047083 61 1.17e-03 GTCTTCAAAC GACGCAAT AGATCGTAGT chr3R:28333027-28333147 79 1.17e-03 TCATTTTTAA GACGCAAT TTGGATAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCAGT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7359864-7359984 1.1e-05 36_[+1]_76 chr2R:9712321-9712441 1.1e-05 70_[+1]_42 chr2R:17435839-17435959 1.1e-05 99_[+1]_13 chr3R:15935077-15935197 1.1e-05 91_[+1]_21 chr3L:9349470-9349590 1.1e-05 41_[+1]_71 chr2R:18531619-18531739 1.1e-05 26_[+1]_86 chr2L:10264253-10264373 1.1e-05 75_[+1]_37 chr2R:10838691-10838811 1.1e-05 75_[+1]_37 chr3R:27129850-27129970 1.1e-05 44_[+1]_68 chr3L:5655242-5655362 1.1e-05 29_[+1]_83 chr2L:3480000-3480120 1.1e-05 34_[+1]_78 chrX:636810-636930 2e-05 52_[+1]_60 chr2R:13015984-13016104 2e-05 78_[+1]_34 chr2L:16284393-16284513 2e-05 109_[+1]_3 chr3L:5810028-5810148 2e-05 45_[+1]_67 chr3L:14554086-14554206 2e-05 88_[+1]_24 chr3R:21190886-21191006 2e-05 44_[+1]_68 chr3L:21346830-21346950 2e-05 13_[+1]_99 chrX:10739169-10739289 2e-05 70_[+1]_42 chr3R:21434229-21434349 2e-05 31_[+1]_81 chr3R:11759037-11759157 2e-05 82_[+1]_30 chr2L:16273646-16273766 2e-05 76_[+1]_36 chr3L:630741-630861 2e-05 55_[+1]_57 chrX:793072-793192 4.3e-05 96_[+1]_16 chr3R:21853723-21853843 4.3e-05 54_[+1]_58 chr2R:11637639-11637759 4.3e-05 104_[+1]_8 chr2L:1723671-1723791 4.3e-05 91_[+1]_21 chr3R:21618557-21618677 4.3e-05 83_[+1]_29 chr3R:4803725-4803845 4.3e-05 43_[+1]_69 chr3L:7116066-7116186 4.3e-05 64_[+1]_48 chr3L:20519320-20519440 4.3e-05 70_[+1]_42 chr3L:4411612-4411732 4.3e-05 1_[+1]_111 chr3R:9874256-9874376 4.3e-05 27_[+1]_85 chrX:5880221-5880341 4.3e-05 86_[+1]_26 chr2R:17721667-17721787 4.3e-05 78_[+1]_34 chr2R:7805447-7805567 4.3e-05 20_[+1]_92 chr3R:21581815-21581935 4.3e-05 44_[+1]_68 chrX:8093239-8093359 4.3e-05 64_[+1]_48 chr2R:16104643-16104763 5.7e-05 75_[+1]_37 chr2R:9439140-9439260 5.7e-05 41_[+1]_71 chr3L:20198141-20198261 5.7e-05 20_[+1]_92 chr3R:16353293-16353413 5.7e-05 27_[+1]_85 chr2R:16011545-16011665 5.7e-05 100_[+1]_12 chr3L:9456239-9456359 5.7e-05 83_[+1]_29 chr3R:27660683-27660803 5.7e-05 46_[+1]_66 chr2R:8947342-8947462 5.7e-05 76_[+1]_36 chr2R:9549904-9550024 5.7e-05 27_[+1]_85 chrX:13749219-13749339 5.7e-05 71_[+1]_41 chr3R:21073303-21073423 7.5e-05 85_[+1]_27 chr3R:18412537-18412657 7.5e-05 23_[+1]_89 chr3R:16356889-16357009 7.5e-05 41_[+1]_71 chrX:10365844-10365964 7.5e-05 52_[+1]_60 chr2L:19166140-19166260 7.5e-05 76_[+1]_36 chrX:16803347-16803467 0.0001 38_[+1]_74 chr2L:19542562-19542682 0.0001 109_[+1]_3 chr3L:140222-140342 0.0001 66_[+1]_46 chr2L:16886724-16886844 0.0001 29_[+1]_83 chr3R:8979992-8980112 0.0001 15_[+1]_97 chr2R:18442885-18443005 0.0001 56_[+1]_56 chr3R:9873120-9873240 0.0001 63_[+1]_49 chr2R:8149942-8150062 0.0001 66_[+1]_46 chr2R:9814164-9814284 0.00011 105_[+1]_7 chr2R:19267982-19268102 0.00011 53_[+1]_59 chrX:3414776-3414896 0.00011 40_[+1]_72 chr2L:6343600-6343720 0.00015 33_[+1]_79 chr2R:8030972-8031092 0.00015 84_[+1]_28 chr2L:19571926-19572046 0.00015 51_[+1]_61 chr3R:24050701-24050821 0.00015 73_[+1]_39 chrX:6756517-6756637 0.00015 32_[+1]_80 chrX:3379474-3379594 0.00015 2_[+1]_110 chrX:9155735-9155855 0.00015 83_[+1]_29 chrX:11379246-11379366 0.00016 101_[+1]_11 chr3R:14477244-14477364 0.00016 53_[+1]_59 chr2R:8948999-8949119 0.00016 57_[+1]_55 chrX:13612027-13612147 0.00019 106_[+1]_6 chr2R:24962548-24962668 0.00019 60_[+1]_52 chr3L:11400902-11401022 0.00019 34_[+1]_78 chr3R:10330153-10330273 0.00019 52_[+1]_60 chr2R:18445835-18445955 0.00019 80_[+1]_32 chr3L:5765474-5765594 0.00022 39_[+1]_73 chr2L:2999232-2999352 0.00022 105_[+1]_7 chr2R:18834693-18834813 0.00022 29_[+1]_83 chr3R:26966912-26967032 0.00022 84_[+1]_28 chr2L:21573552-21573672 0.00022 53_[+1]_59 chr3L:224304-224424 0.00022 40_[+1]_72 chr2L:2804961-2805081 0.00022 85_[+1]_27 chrX:22481376-22481496 0.00022 76_[+1]_36 chr2R:17444630-17444750 0.00028 40_[+1]_72 chr2R:8725628-8725748 0.00028 40_[+1]_72 chrX:3764373-3764493 0.00028 23_[+1]_89 chr3R:11759606-11759726 0.0003 80_[+1]_32 chr2L:1654344-1654464 0.00033 25_[+1]_87 chr3L:18786452-18786572 0.00033 [+1]_112 chr3R:11220036-11220156 0.00033 38_[+1]_74 chrX:18137006-18137126 0.00033 14_[+1]_98 chr3L:17529577-17529697 0.00033 18_[+1]_94 chrX:17738311-17738431 0.00039 72_[+1]_40 chr2L:16520128-16520248 0.00039 101_[+1]_11 chrX:19168218-19168338 0.00039 104_[+1]_8 chr3R:28811215-28811335 0.00039 72_[+1]_40 chr2L:6921238-6921358 0.00039 104_[+1]_8 chrX:18789420-18789540 0.00039 56_[+1]_56 chr3L:10226135-10226255 0.00039 50_[+1]_62 chr2R:9136805-9136925 0.00044 74_[+1]_38 chr3L:9899416-9899536 0.00052 35_[+1]_77 chr3R:31608255-31608375 0.00052 80_[+1]_32 chr2L:2217242-2217362 0.00052 55_[+1]_57 chr3R:25968674-25968794 0.00052 110_[+1]_2 chr2R:10617672-10617792 0.00052 68_[+1]_44 chr2R:13587375-13587495 0.0006 84_[+1]_28 chr3L:6955433-6955553 0.0006 47_[+1]_65 chr3R:14063336-14063456 0.0006 79_[+1]_33 chr2L:13296291-13296411 0.0006 105_[+1]_7 chr3L:4221882-4222002 0.0006 59_[+1]_53 chr3R:4381230-4381350 0.00063 91_[+1]_21 chr3R:9878118-9878238 0.00063 67_[+1]_45 chr3R:21268699-21268819 0.00063 44_[+1]_68 chr3L:3083318-3083438 0.00063 59_[+1]_53 chr3R:24226913-24227033 0.00068 39_[+1]_73 chrX:18366162-18366282 0.00068 36_[+1]_76 chr2R:23906951-23907071 0.00068 25_[+1]_87 chr3R:12985980-12986100 0.00074 76_[+1]_36 chr3R:11243287-11243407 0.00074 27_[+1]_85 chrX:11557652-11557772 0.00074 30_[+1]_82 chr2L:19576935-19577055 0.00074 70_[+1]_42 chrX:13752684-13752804 0.00074 63_[+1]_49 chr3R:24518215-24518335 0.0008 104_[+1]_8 chrX:6179590-6179710 0.0008 78_[+1]_34 chr3L:17843037-17843157 0.0008 93_[+1]_19 chr2R:18440146-18440266 0.00095 31_[+1]_81 chrX:14826076-14826196 0.0011 109_[+1]_3 chrX:6279377-6279497 0.0011 101_[+1]_11 chr3L:3149171-3149291 0.0012 68_[+1]_44 chr2L:12046963-12047083 0.0012 60_[+1]_52 chr3R:28333027-28333147 0.0012 78_[+1]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCAGT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCGCAGT width=8 seqs=135 chr3L:7359864-7359984 ( 37) TGCGCAGT 1 chr2R:9712321-9712441 ( 71) TGCGCAGT 1 chr2R:17435839-17435959 ( 100) TGCGCAGT 1 chr3R:15935077-15935197 ( 92) TGCGCAGT 1 chr3L:9349470-9349590 ( 42) TGCGCAGT 1 chr2R:18531619-18531739 ( 27) TGCGCAGT 1 chr2L:10264253-10264373 ( 76) TGCGCAGT 1 chr2R:10838691-10838811 ( 76) TGCGCAGT 1 chr3R:27129850-27129970 ( 45) TGCGCAGT 1 chr3L:5655242-5655362 ( 30) TGCGCAGT 1 chr2L:3480000-3480120 ( 35) TGCGCAGT 1 chrX:636810-636930 ( 53) TGCGCAGC 1 chr2R:13015984-13016104 ( 79) TGCGCAGC 1 chr2L:16284393-16284513 ( 110) TGCGCAGC 1 chr3L:5810028-5810148 ( 46) TGCGCAGC 1 chr3L:14554086-14554206 ( 89) TGCGCAGC 1 chr3R:21190886-21191006 ( 45) TGCGCAGC 1 chr3L:21346830-21346950 ( 14) TGCGCAGC 1 chrX:10739169-10739289 ( 71) TGCGCAGC 1 chr3R:21434229-21434349 ( 32) TGCGCAGC 1 chr3R:11759037-11759157 ( 83) TGCGCAGC 1 chr2L:16273646-16273766 ( 77) TGCGCAGC 1 chr3L:630741-630861 ( 56) TGCGCAGC 1 chrX:793072-793192 ( 97) TGCGCCGT 1 chr3R:21853723-21853843 ( 55) TGCGTAGT 1 chr2R:11637639-11637759 ( 105) TGCGTAGT 1 chr2L:1723671-1723791 ( 92) TGCGCCGT 1 chr3R:21618557-21618677 ( 84) TGCGTAGT 1 chr3R:4803725-4803845 ( 44) TGCGTAGT 1 chr3L:7116066-7116186 ( 65) TGCGTAGT 1 chr3L:20519320-20519440 ( 71) TGCGTAGT 1 chr3L:4411612-4411732 ( 2) TGCGTAGT 1 chr3R:9874256-9874376 ( 28) TGCGTAGT 1 chrX:5880221-5880341 ( 87) TGCGCCGT 1 chr2R:17721667-17721787 ( 79) TGCGTAGT 1 chr2R:7805447-7805567 ( 21) TGCGTAGT 1 chr3R:21581815-21581935 ( 45) TGCGTAGT 1 chrX:8093239-8093359 ( 65) TGCGTAGT 1 chr2R:16104643-16104763 ( 76) TGCGCAAT 1 chr2R:9439140-9439260 ( 42) TGCGCAAT 1 chr3L:20198141-20198261 ( 21) TGCGCAAT 1 chr3R:16353293-16353413 ( 28) TGCGCAAT 1 chr2R:16011545-16011665 ( 101) TGCGCAAT 1 chr3L:9456239-9456359 ( 84) TGCGCAAT 1 chr3R:27660683-27660803 ( 47) TGCGCAAT 1 chr2R:8947342-8947462 ( 77) TGCGCAAT 1 chr2R:9549904-9550024 ( 28) TGCGCAAT 1 chrX:13749219-13749339 ( 72) TGCGCAAT 1 chr3R:21073303-21073423 ( 86) TGCGCCGC 1 chr3R:18412537-18412657 ( 24) TGCGTAGC 1 chr3R:16356889-16357009 ( 42) TGCGTAGC 1 chrX:10365844-10365964 ( 53) TGCGTAGC 1 chr2L:19166140-19166260 ( 77) TGCGTAGC 1 chrX:16803347-16803467 ( 39) TGCGCAAC 1 chr2L:19542562-19542682 ( 110) TACGCAGT 1 chr3L:140222-140342 ( 67) TGCGCAAC 1 chr2L:16886724-16886844 ( 30) TACGCAGT 1 chr3R:8979992-8980112 ( 16) TACGCAGT 1 chr2R:18442885-18443005 ( 57) TACGCAGT 1 chr3R:9873120-9873240 ( 64) TACGCAGT 1 chr2R:8149942-8150062 ( 67) TACGCAGT 1 chr2R:9814164-9814284 ( 106) TGCGCAGA 1 chr2R:19267982-19268102 ( 54) TGCGCAGA 1 chrX:3414776-3414896 ( 41) TGCGCAGA 1 chr2L:6343600-6343720 ( 34) TGCGTCGT 1 chr2R:8030972-8031092 ( 85) TGCGTCGT 1 chr2L:19571926-19572046 ( 52) TGCGCATT 1 chr3R:24050701-24050821 ( 74) GGCGCAGT 1 chrX:6756517-6756637 ( 33) TGCGCATT 1 chrX:3379474-3379594 ( 3) TGCGTCGT 1 chrX:9155735-9155855 ( 84) TGCGTCGT 1 chrX:11379246-11379366 ( 102) TACGCAGC 1 chr3R:14477244-14477364 ( 54) TACGCAGC 1 chr2R:8948999-8949119 ( 58) TACGCAGC 1 chrX:13612027-13612147 ( 107) TGCGCCAT 1 chr2R:24962548-24962668 ( 61) TGCGCCAT 1 chr3L:11400902-11401022 ( 35) TGCGTAAT 1 chr3R:10330153-10330273 ( 53) TGCGTAAT 1 chr2R:18445835-18445955 ( 81) TGCGTAAT 1 chr3L:5765474-5765594 ( 40) GGCGCAGC 1 chr2L:2999232-2999352 ( 106) TGCGCATC 1 chr2R:18834693-18834813 ( 30) GGCGCAGC 1 chr3R:26966912-26967032 ( 85) TGCGCTGT 1 chr2L:21573552-21573672 ( 54) TGCGTCGC 1 chr3L:224304-224424 ( 41) TGCGTCGC 1 chr2L:2804961-2805081 ( 86) TGCGCATC 1 chrX:22481376-22481496 ( 77) TGCGTCGC 1 chr2R:17444630-17444750 ( 41) TACGCCGT 1 chr2R:8725628-8725748 ( 41) TGCGCCAC 1 chrX:3764373-3764493 ( 24) TACGCCGT 1 chr3R:11759606-11759726 ( 81) TGCGTAGA 1 chr2L:1654344-1654464 ( 26) TGCGCTGC 1 chr3L:18786452-18786572 ( 1) TACGCAAT 1 chr3R:11220036-11220156 ( 39) TGCGCTGC 1 chrX:18137006-18137126 ( 15) TGCGCTGC 1 chr3L:17529577-17529697 ( 19) TACGCAAT 1 chrX:17738311-17738431 ( 73) TGCGCAAA 1 chr2L:16520128-16520248 ( 102) GGCGTAGT 1 chrX:19168218-19168338 ( 105) TGCGCAAA 1 chr3R:28811215-28811335 ( 73) TGCGCCTT 1 chr2L:6921238-6921358 ( 105) TGCGTATT 1 chrX:18789420-18789540 ( 57) TGCGCAAA 1 chr3L:10226135-10226255 ( 51) GGCGTAGT 1 chr2R:9136805-9136925 ( 75) TGCGTCAT 1 chr3L:9899416-9899536 ( 36) TGCGTTGT 1 chr3R:31608255-31608375 ( 81) TGCGTTGT 1 chr2L:2217242-2217362 ( 56) TGCGCCTC 1 chr3R:25968674-25968794 ( 111) TGCGTATC 1 chr2R:10617672-10617792 ( 69) TACGCAGA 1 chr2R:13587375-13587495 ( 85) TACGTCGT 1 chr3L:6955433-6955553 ( 48) TACGTCGT 1 chr3R:14063336-14063456 ( 80) GACGCAGT 1 chr2L:13296291-13296411 ( 106) GACGCAGT 1 chr3L:4221882-4222002 ( 60) TACGCATT 1 chr3R:4381230-4381350 ( 92) TGCGCATA 1 chr3R:9878118-9878238 ( 68) TGCGCATA 1 chr3R:21268699-21268819 ( 45) TGCGCATA 1 chr3L:3083318-3083438 ( 60) TGCGTCGA 1 chr3R:24226913-24227033 ( 40) TGCGTTGC 1 chrX:18366162-18366282 ( 37) TACGCCAT 1 chr2R:23906951-23907071 ( 26) TACGCCAT 1 chr3R:12985980-12986100 ( 77) GGCGTCGT 1 chr3R:11243287-11243407 ( 28) GGCGCATT 1 chrX:11557652-11557772 ( 31) GGCGCATT 1 chr2L:19576935-19577055 ( 71) TGCGTAAA 1 chrX:13752684-13752804 ( 64) TGCGTCTT 1 chr3R:24518215-24518335 ( 105) TACGTCGC 1 chrX:6179590-6179710 ( 79) TACGCTGT 1 chr3L:17843037-17843157 ( 94) GACGCAGC 1 chr2R:18440146-18440266 ( 32) TGCGCTTT 1 chrX:14826076-14826196 ( 110) GGCGCCAC 1 chrX:6279377-6279497 ( 102) TACGCAAA 1 chr3L:3149171-3149291 ( 69) TACGTCAT 1 chr2L:12046963-12047083 ( 61) GACGCAAT 1 chr3R:28333027-28333147 ( 79) GACGCAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCAGT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.72248 E= 4.8e-057 -1372 -1372 -107 167 -44 -1372 186 -1372 -1372 219 -1372 -1372 -1372 -1372 220 -1372 -1372 164 -1372 18 135 -3 -1372 -208 -25 -1372 157 -125 -144 40 -1372 111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCAGT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 135 E= 4.8e-057 0.000000 0.000000 0.103704 0.896296 0.207407 0.000000 0.792593 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.681481 0.000000 0.318519 0.718519 0.214815 0.000000 0.066667 0.237037 0.000000 0.644444 0.118519 0.103704 0.288889 0.000000 0.607407 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGCAGT MEME-1 regular expression -------------------------------------------------------------------------------- T[GA]CG[CT][AC][GA][TC] -------------------------------------------------------------------------------- Time 7.36 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACA MEME-2 width = 8 sites = 35 llr = 307 E-value = 3.6e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :6:9:9:8 pos.-specific C 92a1a:a: probability G :2:::1:1 matrix T 1::::::1 bits 2.2 * * * 2.0 * * * 1.8 * * * * 1.5 * * * * Relative 1.3 * ***** Entropy 1.1 * ***** (12.7 bits) 0.9 * ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13332974-13333094 1 1.45e-05 . CACACACA ATGGTGGCCT chr2L:19571926-19572046 112 1.45e-05 CATATTCGCA CACACACA C chr3R:18412537-18412657 72 1.45e-05 ctcgcattca cacacaca gacacacacg chr3R:21853723-21853843 83 1.45e-05 CATAATAACG CACACACA CTCGCACACG chr2L:21629366-21629486 2 1.45e-05 A CACACACA AATAATTCAT chr2L:6921238-6921358 1 1.45e-05 . cacacaca cgctctcacg chrX:10365844-10365964 94 1.45e-05 TTACAGCCAa cacacaca cacacgcata chrX:3378698-3378818 79 1.45e-05 CGTacacaca cacacaca catacaTGAC chr2L:19576935-19577055 29 1.45e-05 GCGGCGCCCA CACACACA TACACAAAAA chr3R:28333027-28333147 20 1.45e-05 CCAACAACca cacacaca cacgcacgca chrX:5880221-5880341 29 1.45e-05 taaatacata cacacaca tacacacacT chr3R:9874457-9874577 39 2.58e-05 GCCTCACACT CGCACACA AACACACATG chr3L:7116066-7116186 48 2.58e-05 AATTTTAACG CGCACACA TCAACGAAAT chrX:21388899-21389019 25 2.58e-05 CGCTTATTAC CGCACACA GCTATCGATA chrX:16781197-16781317 13 3.71e-05 GCCAGCCCTT CCCACACA ACTTTAGTTT chr3R:31608255-31608375 23 3.71e-05 TACAGCAACA CCCACACA CCCACACCAA chr2L:559555-559675 7 3.71e-05 AGCTTA CCCACACA ATCATCCGTC chr2R:8948999-8949119 44 3.71e-05 ACGGCCCCCG CCCACACA GGCAACTACG chr3R:11759037-11759157 24 4.83e-05 TTGCACACAT CACACACG AACGTTATCT chrX:636810-636930 69 5.96e-05 GCAGGGAAGC CACACGCA TGAACGCCTT chr3L:18786452-18786572 23 5.96e-05 TTTCCCGCCT CACACGCA CCAAAGCTTC chr3R:21581815-21581935 107 5.96e-05 AAAAAAACCG CACACGCA ATTTGT chrX:19605187-19605307 69 7.41e-05 CAACCGAAAT CACACACT TGAACGTCTT chr3L:630741-630861 100 7.41e-05 TACAGATGGG CACACACT AAATAGTTTT chrX:11137721-11137841 39 8.54e-05 ACAGTGGAAA CACCCACA TTCGAGACGC chrX:6684223-6684343 49 8.54e-05 caaccaccac cacccaca aacagaaAAT chrX:8409219-8409339 5 9.41e-05 CATA CGCACACG GCTCGCGGGG chrX:3379474-3379594 37 9.41e-05 TTGCTTTATT CGCACACG TGTAGCAATA chr3R:21582015-21582135 38 9.41e-05 CGCTCTCTCA CGCACACG TTTGTGTGCT chr2L:19166140-19166260 54 1.20e-04 cggcaacCAT CCCACGCA ATTTATCATA chr2R:10838691-10838811 103 1.32e-04 TGTTGAACAA CGCACACT CAAATTCGAA chr2R:9439140-9439260 62 1.62e-04 CCCCAACAAC TACACACA TTTTTCAAAC chr2R:11637639-11637759 43 1.62e-04 CGCACTTCAT CCCACACT CATCCCGCCC chrX:11557652-11557772 82 1.62e-04 CGCAATAGTT TACACACA ATGTGAATGA chr3L:15498904-15499024 77 1.73e-04 AACACTGTAG CACGCACA TGTTGTTTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13332974-13333094 1.5e-05 [+2]_112 chr2L:19571926-19572046 1.5e-05 111_[+2]_1 chr3R:18412537-18412657 1.5e-05 71_[+2]_41 chr3R:21853723-21853843 1.5e-05 82_[+2]_30 chr2L:21629366-21629486 1.5e-05 1_[+2]_111 chr2L:6921238-6921358 1.5e-05 [+2]_112 chrX:10365844-10365964 1.5e-05 93_[+2]_19 chrX:3378698-3378818 1.5e-05 78_[+2]_34 chr2L:19576935-19577055 1.5e-05 28_[+2]_84 chr3R:28333027-28333147 1.5e-05 19_[+2]_93 chrX:5880221-5880341 1.5e-05 28_[+2]_84 chr3R:9874457-9874577 2.6e-05 38_[+2]_74 chr3L:7116066-7116186 2.6e-05 47_[+2]_65 chrX:21388899-21389019 2.6e-05 24_[+2]_88 chrX:16781197-16781317 3.7e-05 12_[+2]_100 chr3R:31608255-31608375 3.7e-05 22_[+2]_90 chr2L:559555-559675 3.7e-05 6_[+2]_106 chr2R:8948999-8949119 3.7e-05 43_[+2]_69 chr3R:11759037-11759157 4.8e-05 23_[+2]_89 chrX:636810-636930 6e-05 68_[+2]_44 chr3L:18786452-18786572 6e-05 22_[+2]_90 chr3R:21581815-21581935 6e-05 106_[+2]_6 chrX:19605187-19605307 7.4e-05 68_[+2]_44 chr3L:630741-630861 7.4e-05 99_[+2]_13 chrX:11137721-11137841 8.5e-05 38_[+2]_74 chrX:6684223-6684343 8.5e-05 48_[+2]_64 chrX:8409219-8409339 9.4e-05 4_[+2]_108 chrX:3379474-3379594 9.4e-05 36_[+2]_76 chr3R:21582015-21582135 9.4e-05 37_[+2]_75 chr2L:19166140-19166260 0.00012 53_[+2]_59 chr2R:10838691-10838811 0.00013 102_[+2]_10 chr2R:9439140-9439260 0.00016 61_[+2]_51 chr2R:11637639-11637759 0.00016 42_[+2]_70 chrX:11557652-11557772 0.00016 81_[+2]_31 chr3L:15498904-15499024 0.00017 76_[+2]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACA width=8 seqs=35 chrX:13332974-13333094 ( 1) CACACACA 1 chr2L:19571926-19572046 ( 112) CACACACA 1 chr3R:18412537-18412657 ( 72) CACACACA 1 chr3R:21853723-21853843 ( 83) CACACACA 1 chr2L:21629366-21629486 ( 2) CACACACA 1 chr2L:6921238-6921358 ( 1) CACACACA 1 chrX:10365844-10365964 ( 94) CACACACA 1 chrX:3378698-3378818 ( 79) CACACACA 1 chr2L:19576935-19577055 ( 29) CACACACA 1 chr3R:28333027-28333147 ( 20) CACACACA 1 chrX:5880221-5880341 ( 29) CACACACA 1 chr3R:9874457-9874577 ( 39) CGCACACA 1 chr3L:7116066-7116186 ( 48) CGCACACA 1 chrX:21388899-21389019 ( 25) CGCACACA 1 chrX:16781197-16781317 ( 13) CCCACACA 1 chr3R:31608255-31608375 ( 23) CCCACACA 1 chr2L:559555-559675 ( 7) CCCACACA 1 chr2R:8948999-8949119 ( 44) CCCACACA 1 chr3R:11759037-11759157 ( 24) CACACACG 1 chrX:636810-636930 ( 69) CACACGCA 1 chr3L:18786452-18786572 ( 23) CACACGCA 1 chr3R:21581815-21581935 ( 107) CACACGCA 1 chrX:19605187-19605307 ( 69) CACACACT 1 chr3L:630741-630861 ( 100) CACACACT 1 chrX:11137721-11137841 ( 39) CACCCACA 1 chrX:6684223-6684343 ( 49) CACCCACA 1 chrX:8409219-8409339 ( 5) CGCACACG 1 chrX:3379474-3379594 ( 37) CGCACACG 1 chr3R:21582015-21582135 ( 38) CGCACACG 1 chr2L:19166140-19166260 ( 54) CCCACGCA 1 chr2R:10838691-10838811 ( 103) CGCACACT 1 chr2R:9439140-9439260 ( 62) TACACACA 1 chr2R:11637639-11637759 ( 43) CCCACACT 1 chrX:11557652-11557772 ( 82) TACACACA 1 chr3L:15498904-15499024 ( 77) CACGCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0411 E= 3.6e-002 -1177 211 -1177 -230 116 -35 -12 -1177 -1177 219 -1177 -1177 170 -193 -293 -1177 -1177 219 -1177 -1177 165 -1177 -93 -1177 -1177 219 -1177 -1177 145 -1177 -93 -130 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 3.6e-002 0.000000 0.942857 0.000000 0.057143 0.628571 0.171429 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.914286 0.057143 0.028571 0.000000 0.000000 1.000000 0.000000 0.000000 0.885714 0.000000 0.114286 0.000000 0.000000 1.000000 0.000000 0.000000 0.771429 0.000000 0.114286 0.114286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 regular expression -------------------------------------------------------------------------------- C[AG]CACACA -------------------------------------------------------------------------------- Time 13.36 secs. ******************************************************************************** ******************************************************************************** MOTIF TKTTKTTT MEME-3 width = 8 sites = 77 llr = 571 E-value = 1.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKTTKTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1::11::: pos.-specific C ::1::1:: probability G :4::6::1 matrix T 969939a9 bits 2.2 2.0 1.8 * 1.5 * ** Relative 1.3 * ** *** Entropy 1.1 **** *** (10.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTGTTT consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTKTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24293580-24293700 9 3.09e-05 CATTTGCT TTTTGTTT GCATGTGCGT chr2R:8122871-8122991 45 3.09e-05 GATTTAATAC TTTTGTTT TATTGCGATT chr2L:16520128-16520248 28 3.09e-05 CTAGACTTTT TTTTGTTT GCTGTGCGCG chr2L:2217242-2217362 100 3.09e-05 TATCTCACGT TTTTGTTT TTGCAAACTG chr2R:9136805-9136925 31 3.09e-05 GGAGACTTCG TTTTGTTT ACGGCGATTA chr3R:21190886-21191006 99 3.09e-05 CCCCTTGGTA TTTTGTTT TTGGACAACC chr2R:9814164-9814284 68 3.09e-05 tgctctctga ttttgttt tcgtCGATGT chr2L:12541468-12541588 69 3.09e-05 TTTCATTATT TTTTGTTT CGCCTCAGTT chr2L:10264253-10264373 45 3.09e-05 GATGTGGTCT TTTTGTTT GAACATGATC chr2R:21505913-21506033 73 3.09e-05 ACGAGTTTTG TTTTGTTT ATCGTTTGAA chr2L:16273646-16273766 107 3.09e-05 TGGCTTTTGT TTTTGTTT GGCTTT chr3R:9874256-9874376 13 3.09e-05 GTAGATTTGG TTTTGTTT TTTTAACTGC chr3R:9883633-9883753 76 3.09e-05 ATGGTCGCCA TTTTGTTT TCTCACCGTT chr3L:15498904-15499024 85 5.48e-05 AGCACGCACA TGTTGTTT ATGTTCGAAA chr3R:25215217-25215337 88 5.48e-05 AAACATTTTT TGTTGTTT TTTTTAATTA chr3L:616984-617104 50 5.48e-05 ttgttgttgt tgttgttT TAGTGTATGT chr3R:28811215-28811335 86 5.48e-05 GCCTTGGCTT TGTTGTTT TTGTCACGCT chrX:19146507-19146627 23 5.48e-05 AACACCttgt tgttgttt tttacgtgtt chr3R:15935077-15935197 100 5.48e-05 GGTGCGCAGT TGTTGTTT CCATAGACGT chr3R:15328218-15328338 95 5.48e-05 GGTCATACTG TGTTGTTT GGCAACGCGA chr2L:12046963-12047083 113 5.48e-05 GCCTCAACAA TGTTGTTT chr3L:548998-549118 81 5.48e-05 ATATTTCAGT TGTTGTTT GCGCTCCCCA chr3R:4951921-4952041 74 5.48e-05 GGAAGAAGAA TGTTGTTT GGTTTTCCCA chr2R:18442885-18443005 65 5.48e-05 ACTACGCAGT TGTTGTTT ATGCTGCTGC chr3L:17529577-17529697 1 5.48e-05 . TGTTGTTT TCGTTTCTAA chr2L:8982662-8982782 69 9.48e-05 ATGTTTGTAA TTTTTTTT ACTGTTTTTT chrX:6179590-6179710 48 9.48e-05 GATTTCAATG TTTTTTTT TTGCTGCCAA chr2L:5225743-5225863 72 9.48e-05 CATATTCCTA TTTTTTTT TTTTGAATTG chr2R:13038616-13038736 77 9.48e-05 TTTTTCTCGC TTTTTTTT GGGGGGGGCT chr3R:16353293-16353413 107 9.48e-05 GTTCAAAAAC TTTTTTTT ATAGTT chrX:10739169-10739289 105 9.48e-05 AACTGCCTCG TTTTTTTT CACCCTTA chrX:3414776-3414896 89 9.48e-05 cggtttttga tttttttt attatgattt chr2R:7805447-7805567 67 9.48e-05 GTTTTCTGTT TTTTTTTT CGAGTTTTGG chr3R:27559083-27559203 1 1.26e-04 . TGTTTTTT AACGAACGCG chr2L:4973940-4974060 55 1.26e-04 TACGAACAGC TGTTTTTT CCAAACAGGA chrX:8112859-8112979 112 1.26e-04 ACGATAAAAC TGTTTTTT T chr2R:10838691-10838811 64 1.26e-04 GCGGTCACAC TGTTTTTT TCACTGCGCA chrX:948340-948460 70 1.50e-04 CAGGGCCGCG TTTTGTTG ACGAGGTCAC chr3L:20519320-20519440 86 1.50e-04 AGTTTAAATC TTTTGTTG CTGTCCAGTG chr3R:14051619-14051739 2 1.50e-04 T TTTTGTTG CTTCTTTTAG chrX:5880221-5880341 70 1.50e-04 TCGCTTCTGT TTTTGTTG CTACTTTATT chr3L:9899416-9899536 77 1.68e-04 TATttgttgt tgttgttg ttgctgctgC chrX:3379474-3379594 22 1.68e-04 GTTGTTGGCT TGTTGTTG CTTTATTCGC chr3R:21581815-21581935 24 1.68e-04 GAGAGCGTGT TGTTGTTG TGCGAATTTC chr2R:16104643-16104763 107 1.92e-04 AATTTTCAGT TTCTGTTT GTGTTT chr3R:4803725-4803845 82 1.92e-04 ACTATCTGGG TTCTGTTT CAACTTGCCT chrX:6661398-6661518 99 2.32e-04 ACACAGCTGT TTTTATTT ATTCGAAATA chrX:18137006-18137126 49 2.32e-04 TGCTGGCTAT TTTTATTT GTAAATGAAA chr3R:9873120-9873240 29 2.32e-04 ATTTTTTGAC TTTTATTT CGGATTTTGG chr2R:17590740-17590860 15 2.82e-04 CGTTTTTATC TTTTTTTG ACAAAATTGT chr2L:21629366-21629486 23 2.82e-04 AATTCATCGT TGCTGTTT GCCGGCCGGA chr3L:140222-140342 48 2.82e-04 ATAATCATCG TTTTTTTG TTACATTTTG chrX:13752684-13752804 30 2.82e-04 TTTCGCGCCA TTTTTTTG ACCGCATCTG chr2L:8894351-8894471 38 3.13e-04 ATTAAGAACA ATTTGTTT GACAGCTGCC chr3R:28333027-28333147 1 3.13e-04 . ATTTGTTT ACCAACAACc chr2L:18708038-18708158 33 3.67e-04 TACGTGACCC TGTTATTT TGACATTCAC chr2L:8239811-8239931 111 3.67e-04 CCGATTCGAT TGTTATTT TT chr2L:21310837-21310957 68 3.67e-04 AAGGTTCAAT TGTTATTT TCTCTCACGA chr3L:835620-835740 99 3.67e-04 ATAGACGACA TTTTGCTT GCATAAAACA chrX:16781197-16781317 23 4.22e-04 CCCACACAAC TTTAGTTT AAATTGAAGA chr2R:24962548-24962668 46 4.22e-04 CACTGATAAA TTTAGTTT CAGTGACTGC chrX:10184819-10184939 53 4.22e-04 TAATCTTCCA TTTAGTTT TGAATCATTT chr3R:21582015-21582135 90 4.22e-04 ATGCTTGATT TGTTTTTG TTCTTATTGT chr2L:20078964-20079084 111 4.46e-04 GATTGTTACT AGTTGTTT TC chr3L:3083318-3083438 24 4.46e-04 TTGGCGGCTC AGTTGTTT ACCGCAGAAA chrX:22481376-22481496 47 4.46e-04 AAAAACACCA AGTTGTTT GGCCTTCGAT chr2L:1723671-1723791 7 4.96e-04 CCGCAT TTCTTTTT CGGTTTGCTC chr2L:21573552-21573672 99 4.96e-04 TACATCGCAG TTCTTTTT ATATGTATAT chr2R:11630102-11630222 6 4.96e-04 TCCAC TTCTTTTT CCTGCCTCTC chr2R:17444630-17444750 85 5.44e-04 tgctttgctt tgctttTT ACGCCCTAGA chr3L:648296-648416 15 5.84e-04 AATGAAAACT ATTTTTTT ACCACCCCTA chrX:9106600-9106720 56 6.15e-04 ATATATTGCG TTTTTCTT AAGACGTAAG chr2L:17204011-17204131 91 6.15e-04 TAAGCAACAG TTTTTCTT TCTCTGCAGC chr2L:3480000-3480120 86 6.15e-04 CCCTTTACCA TTTTTCTT ATATATACAA chr2R:13015984-13016104 24 6.55e-04 TGGCATTTCA TTTATTTT TTCATTCGCC chr3R:27652455-27652575 112 6.55e-04 TCGCATATAA TTTATTTT C chr2L:9203545-9203665 107 8.52e-04 CATTTTGCAT TTTCGTTT CGTTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTKTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24293580-24293700 3.1e-05 8_[+3]_104 chr2R:8122871-8122991 3.1e-05 44_[+3]_68 chr2L:16520128-16520248 3.1e-05 27_[+3]_85 chr2L:2217242-2217362 3.1e-05 99_[+3]_13 chr2R:9136805-9136925 3.1e-05 30_[+3]_82 chr3R:21190886-21191006 3.1e-05 98_[+3]_14 chr2R:9814164-9814284 3.1e-05 67_[+3]_45 chr2L:12541468-12541588 3.1e-05 68_[+3]_44 chr2L:10264253-10264373 3.1e-05 44_[+3]_68 chr2R:21505913-21506033 3.1e-05 72_[+3]_40 chr2L:16273646-16273766 3.1e-05 106_[+3]_6 chr3R:9874256-9874376 3.1e-05 12_[+3]_100 chr3R:9883633-9883753 3.1e-05 75_[+3]_37 chr3L:15498904-15499024 5.5e-05 84_[+3]_28 chr3R:25215217-25215337 5.5e-05 87_[+3]_25 chr3L:616984-617104 5.5e-05 49_[+3]_63 chr3R:28811215-28811335 5.5e-05 85_[+3]_27 chrX:19146507-19146627 5.5e-05 22_[+3]_90 chr3R:15935077-15935197 5.5e-05 99_[+3]_13 chr3R:15328218-15328338 5.5e-05 94_[+3]_18 chr2L:12046963-12047083 5.5e-05 112_[+3] chr3L:548998-549118 5.5e-05 80_[+3]_32 chr3R:4951921-4952041 5.5e-05 73_[+3]_39 chr2R:18442885-18443005 5.5e-05 64_[+3]_48 chr3L:17529577-17529697 5.5e-05 [+3]_112 chr2L:8982662-8982782 9.5e-05 68_[+3]_44 chrX:6179590-6179710 9.5e-05 47_[+3]_65 chr2L:5225743-5225863 9.5e-05 71_[+3]_41 chr2R:13038616-13038736 9.5e-05 76_[+3]_36 chr3R:16353293-16353413 9.5e-05 106_[+3]_6 chrX:10739169-10739289 9.5e-05 104_[+3]_8 chrX:3414776-3414896 9.5e-05 88_[+3]_24 chr2R:7805447-7805567 9.5e-05 66_[+3]_46 chr3R:27559083-27559203 0.00013 [+3]_112 chr2L:4973940-4974060 0.00013 54_[+3]_58 chrX:8112859-8112979 0.00013 111_[+3]_1 chr2R:10838691-10838811 0.00013 63_[+3]_49 chrX:948340-948460 0.00015 69_[+3]_43 chr3L:20519320-20519440 0.00015 85_[+3]_27 chr3R:14051619-14051739 0.00015 1_[+3]_111 chrX:5880221-5880341 0.00015 69_[+3]_43 chr3L:9899416-9899536 0.00017 76_[+3]_36 chrX:3379474-3379594 0.00017 21_[+3]_91 chr3R:21581815-21581935 0.00017 23_[+3]_89 chr2R:16104643-16104763 0.00019 106_[+3]_6 chr3R:4803725-4803845 0.00019 81_[+3]_31 chrX:6661398-6661518 0.00023 98_[+3]_14 chrX:18137006-18137126 0.00023 48_[+3]_64 chr3R:9873120-9873240 0.00023 28_[+3]_84 chr2R:17590740-17590860 0.00028 14_[+3]_98 chr2L:21629366-21629486 0.00028 22_[+3]_90 chr3L:140222-140342 0.00028 47_[+3]_65 chrX:13752684-13752804 0.00028 29_[+3]_83 chr2L:8894351-8894471 0.00031 37_[+3]_75 chr3R:28333027-28333147 0.00031 [+3]_112 chr2L:18708038-18708158 0.00037 32_[+3]_80 chr2L:8239811-8239931 0.00037 110_[+3]_2 chr2L:21310837-21310957 0.00037 67_[+3]_45 chr3L:835620-835740 0.00037 98_[+3]_14 chrX:16781197-16781317 0.00042 22_[+3]_90 chr2R:24962548-24962668 0.00042 45_[+3]_67 chrX:10184819-10184939 0.00042 52_[+3]_60 chr3R:21582015-21582135 0.00042 89_[+3]_23 chr2L:20078964-20079084 0.00045 110_[+3]_2 chr3L:3083318-3083438 0.00045 23_[+3]_89 chrX:22481376-22481496 0.00045 46_[+3]_66 chr2L:1723671-1723791 0.0005 6_[+3]_106 chr2L:21573552-21573672 0.0005 98_[+3]_14 chr2R:11630102-11630222 0.0005 5_[+3]_107 chr2R:17444630-17444750 0.00054 84_[+3]_28 chr3L:648296-648416 0.00058 14_[+3]_98 chrX:9106600-9106720 0.00061 55_[+3]_57 chr2L:17204011-17204131 0.00061 90_[+3]_22 chr2L:3480000-3480120 0.00061 85_[+3]_27 chr2R:13015984-13016104 0.00065 23_[+3]_89 chr3R:27652455-27652575 0.00065 111_[+3]_1 chr2L:9203545-9203665 0.00085 106_[+3]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTKTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKTTKTTT width=8 seqs=77 chr2R:24293580-24293700 ( 9) TTTTGTTT 1 chr2R:8122871-8122991 ( 45) TTTTGTTT 1 chr2L:16520128-16520248 ( 28) TTTTGTTT 1 chr2L:2217242-2217362 ( 100) TTTTGTTT 1 chr2R:9136805-9136925 ( 31) TTTTGTTT 1 chr3R:21190886-21191006 ( 99) TTTTGTTT 1 chr2R:9814164-9814284 ( 68) TTTTGTTT 1 chr2L:12541468-12541588 ( 69) TTTTGTTT 1 chr2L:10264253-10264373 ( 45) TTTTGTTT 1 chr2R:21505913-21506033 ( 73) TTTTGTTT 1 chr2L:16273646-16273766 ( 107) TTTTGTTT 1 chr3R:9874256-9874376 ( 13) TTTTGTTT 1 chr3R:9883633-9883753 ( 76) TTTTGTTT 1 chr3L:15498904-15499024 ( 85) TGTTGTTT 1 chr3R:25215217-25215337 ( 88) TGTTGTTT 1 chr3L:616984-617104 ( 50) TGTTGTTT 1 chr3R:28811215-28811335 ( 86) TGTTGTTT 1 chrX:19146507-19146627 ( 23) TGTTGTTT 1 chr3R:15935077-15935197 ( 100) TGTTGTTT 1 chr3R:15328218-15328338 ( 95) TGTTGTTT 1 chr2L:12046963-12047083 ( 113) TGTTGTTT 1 chr3L:548998-549118 ( 81) TGTTGTTT 1 chr3R:4951921-4952041 ( 74) TGTTGTTT 1 chr2R:18442885-18443005 ( 65) TGTTGTTT 1 chr3L:17529577-17529697 ( 1) TGTTGTTT 1 chr2L:8982662-8982782 ( 69) TTTTTTTT 1 chrX:6179590-6179710 ( 48) TTTTTTTT 1 chr2L:5225743-5225863 ( 72) TTTTTTTT 1 chr2R:13038616-13038736 ( 77) TTTTTTTT 1 chr3R:16353293-16353413 ( 107) TTTTTTTT 1 chrX:10739169-10739289 ( 105) TTTTTTTT 1 chrX:3414776-3414896 ( 89) TTTTTTTT 1 chr2R:7805447-7805567 ( 67) TTTTTTTT 1 chr3R:27559083-27559203 ( 1) TGTTTTTT 1 chr2L:4973940-4974060 ( 55) TGTTTTTT 1 chrX:8112859-8112979 ( 112) TGTTTTTT 1 chr2R:10838691-10838811 ( 64) TGTTTTTT 1 chrX:948340-948460 ( 70) TTTTGTTG 1 chr3L:20519320-20519440 ( 86) TTTTGTTG 1 chr3R:14051619-14051739 ( 2) TTTTGTTG 1 chrX:5880221-5880341 ( 70) TTTTGTTG 1 chr3L:9899416-9899536 ( 77) TGTTGTTG 1 chrX:3379474-3379594 ( 22) TGTTGTTG 1 chr3R:21581815-21581935 ( 24) TGTTGTTG 1 chr2R:16104643-16104763 ( 107) TTCTGTTT 1 chr3R:4803725-4803845 ( 82) TTCTGTTT 1 chrX:6661398-6661518 ( 99) TTTTATTT 1 chrX:18137006-18137126 ( 49) TTTTATTT 1 chr3R:9873120-9873240 ( 29) TTTTATTT 1 chr2R:17590740-17590860 ( 15) TTTTTTTG 1 chr2L:21629366-21629486 ( 23) TGCTGTTT 1 chr3L:140222-140342 ( 48) TTTTTTTG 1 chrX:13752684-13752804 ( 30) TTTTTTTG 1 chr2L:8894351-8894471 ( 38) ATTTGTTT 1 chr3R:28333027-28333147 ( 1) ATTTGTTT 1 chr2L:18708038-18708158 ( 33) TGTTATTT 1 chr2L:8239811-8239931 ( 111) TGTTATTT 1 chr2L:21310837-21310957 ( 68) TGTTATTT 1 chr3L:835620-835740 ( 99) TTTTGCTT 1 chrX:16781197-16781317 ( 23) TTTAGTTT 1 chr2R:24962548-24962668 ( 46) TTTAGTTT 1 chrX:10184819-10184939 ( 53) TTTAGTTT 1 chr3R:21582015-21582135 ( 90) TGTTTTTG 1 chr2L:20078964-20079084 ( 111) AGTTGTTT 1 chr3L:3083318-3083438 ( 24) AGTTGTTT 1 chrX:22481376-22481496 ( 47) AGTTGTTT 1 chr2L:1723671-1723791 ( 7) TTCTTTTT 1 chr2L:21573552-21573672 ( 99) TTCTTTTT 1 chr2R:11630102-11630222 ( 6) TTCTTTTT 1 chr2R:17444630-17444750 ( 85) TGCTTTTT 1 chr3L:648296-648416 ( 15) ATTTTTTT 1 chrX:9106600-9106720 ( 56) TTTTTCTT 1 chr2L:17204011-17204131 ( 91) TTTTTCTT 1 chr2L:3480000-3480120 ( 86) TTTTTCTT 1 chr2R:13015984-13016104 ( 24) TTTATTTT 1 chr3R:27652455-27652575 ( 112) TTTATTTT 1 chr2L:9203545-9203665 ( 107) TTTCGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTKTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.42632 E= 1.1e-003 -185 -1291 -1291 171 -1291 -1291 74 117 -1291 -127 -1291 169 -212 -407 -1291 171 -185 -1291 142 26 -1291 -207 -1291 175 -1291 -1291 -1291 183 -1291 -1291 -61 160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTKTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 77 E= 1.1e-003 0.077922 0.000000 0.000000 0.922078 0.000000 0.000000 0.363636 0.636364 0.000000 0.090909 0.000000 0.909091 0.064935 0.012987 0.000000 0.922078 0.077922 0.000000 0.584416 0.337662 0.000000 0.051948 0.000000 0.948052 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.857143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTKTTT MEME-3 regular expression -------------------------------------------------------------------------------- T[TG]TT[GT]TTT -------------------------------------------------------------------------------- Time 19.35 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCGCCCC MEME-4 width = 8 sites = 7 llr = 80 E-value = 3.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCGCCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::3:::: pos.-specific C aaa:aaaa probability G :::7:::: matrix T :::::::: bits 2.2 *** **** 2.0 *** **** 1.8 *** **** 1.5 *** **** Relative 1.3 ******** Entropy 1.1 ******** (16.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCGCCCC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGCCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9577989-9578109 106 5.27e-06 ACACTAAACC CCCGCCCC CTACAAA chr2R:24962548-24962668 108 5.27e-06 CTGGCCAGCG CCCGCCCC GATGC chr3R:24598755-24598875 48 5.27e-06 GAAACGCTTC CCCGCCCC GCCGCCCCTT chr2R:11637639-11637759 54 5.27e-06 CCACACTCAT CCCGCCCC CTCATCGAGA chr2L:3480000-3480120 67 5.27e-06 GCCTTTGGCC CCCGCCCC GCCCTTTACC chr2R:8030972-8031092 50 1.21e-05 GACGACCACG CCCACCCC GTGGTAGTGG chr3L:15554099-15554219 9 1.21e-05 ACTTATCG CCCACCCC TAAGGCCTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGCCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9577989-9578109 5.3e-06 105_[+4]_7 chr2R:24962548-24962668 5.3e-06 107_[+4]_5 chr3R:24598755-24598875 5.3e-06 47_[+4]_65 chr2R:11637639-11637759 5.3e-06 53_[+4]_59 chr2L:3480000-3480120 5.3e-06 66_[+4]_46 chr2R:8030972-8031092 1.2e-05 49_[+4]_63 chr3L:15554099-15554219 1.2e-05 8_[+4]_104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGCCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCGCCCC width=8 seqs=7 chr2R:9577989-9578109 ( 106) CCCGCCCC 1 chr2R:24962548-24962668 ( 108) CCCGCCCC 1 chr3R:24598755-24598875 ( 48) CCCGCCCC 1 chr2R:11637639-11637759 ( 54) CCCGCCCC 1 chr2L:3480000-3480120 ( 67) CCCGCCCC 1 chr2R:8030972-8031092 ( 50) CCCACCCC 1 chr3L:15554099-15554219 ( 9) CCCACCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGCCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 3.5e+003 -945 219 -945 -945 -945 219 -945 -945 -945 219 -945 -945 2 -945 171 -945 -945 219 -945 -945 -945 219 -945 -945 -945 219 -945 -945 -945 219 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGCCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.5e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.000000 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGCCCC MEME-4 regular expression -------------------------------------------------------------------------------- CCC[GA]CCCC -------------------------------------------------------------------------------- Time 25.19 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAMAAA MEME-5 width = 8 sites = 49 llr = 386 E-value = 2.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAMAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 9aa86aa9 pos.-specific C 1::13::1 probability G :::11::: matrix T :::1:::: bits 2.2 2.0 1.8 ** * 1.5 ** *** Relative 1.3 *** *** Entropy 1.1 *** *** (11.4 bits) 0.9 *** *** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAMAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:9367664-9367784 2 4.00e-05 C AAAAAAAA AAAAGAGAAA chr2R:10429884-10430004 8 4.00e-05 CCCAGCT AAAAAAAA ATGATAATTT chr3L:18786452-18786572 90 4.00e-05 TATCCACCCG AAAAAAAA GACGAAAATA chr2L:17204011-17204131 52 4.00e-05 TAGGCATATG AAAAAAAA AACTTGTAAT chrX:3379474-3379594 102 4.00e-05 GCGTTATAAA AAAAAAAA ACCAAAAGCC chrX:8112859-8112979 54 4.00e-05 AACAGTTTGA AAAAAAAA CGTGCAGGAT chrX:10739169-10739289 47 4.00e-05 aatggaaata aaaaaaaa ataaGCAATG chr3R:25968674-25968794 28 4.00e-05 ACAATTTAAA AAAAAAAA TATTTGGAAA chr3R:14477244-14477364 32 4.00e-05 TAAGGTGACA AAAAAAAA ATAGCCACCT chr3R:9939466-9939586 85 4.00e-05 CGCGCTGAGA AAAAAAAA AGAGAAAAAG chr3L:10226135-10226255 105 4.00e-05 AAAACGCAAA AAAAAAAA TGATGGAA chr3R:21581815-21581935 96 4.00e-05 GCAAACGAAT AAAAAAAA CCGCACACGC chrX:22481376-22481496 100 4.00e-05 Gaaacacaaa aaaaaaaa caatacagaa chr2R:13952632-13952752 8 4.00e-05 GCTCTTC AAAAAAAA CCCAGATCCA chr2R:21141872-21141992 84 7.11e-05 CGGAATATCG AAAACAAA TGAAAACTGA chr2R:13587375-13587495 51 7.11e-05 AAAAATAACG AAAACAAA CAAGAACAGG chr2R:8725628-8725748 52 7.11e-05 GCGCCACACC AAAACAAA CCTTTCTCCA chr2R:9439140-9439260 4 7.11e-05 CCA AAAACAAA GACTCAAAGC chr2R:17435839-17435959 26 7.11e-05 AGCAGCGAGC AAAACAAA CCCGATGAAA chr3R:10330153-10330273 67 7.11e-05 TAATAGAAGA AAAACAAA AACAAAATGC chr3L:9456239-9456359 76 7.11e-05 ACCCGACAAG AAAACAAA TGCGCAATAA chr3R:28333027-28333147 93 7.11e-05 CAATTTGGAT AAAACAAA ATGAAGGTGA chr3R:9883633-9883753 20 7.11e-05 GATGGCGCCA AAAACAAA ATGGCAGCCT chrX:6684223-6684343 81 7.11e-05 TTGCGACGCA Aaaacaaa acaatcgaat chr3R:23228786-23228906 91 1.42e-04 TTGCCCCTCG CAAAAAAA GTTCCATCCA chrX:13612027-13612147 97 1.42e-04 CAGCACTGCC AAATAAAA AGTGCGCCAT chrX:6661398-6661518 112 1.42e-04 TATTTATTCG AAATAAAA C chr3R:31630494-31630614 3 1.42e-04 AA AAATAAAA TACATTGCCA chr3L:20198141-20198261 107 1.42e-04 GCTAAAATCA AAATAAAA CTATTC chr3L:835620-835740 82 1.42e-04 TGCGTTCTTG CAAAAAAA TAGACGACAT chr2L:3480000-3480120 11 1.42e-04 ACAAACGCCA CAAAAAAA TAGATCTTTA chrX:13332974-13333094 103 1.73e-04 CCAATTTCCA AAAAGAAA GGGCTTTAAA chr3R:26966912-26967032 52 1.73e-04 ACGCAAATGG AAAAGAAA ACATAAACGC chr2R:10617672-10617792 92 1.73e-04 TTTTACCAAG AAAAGAAA AAACTTCGCA chr3L:3149171-3149291 84 2.90e-04 CATAAGAATT AAAGAAAA TTCAAGGTCT chr2R:16027907-16028027 96 2.90e-04 AAAATTACAC AAAGAAAA AAGTGGCTAG chrX:636810-636930 103 2.90e-04 ACAGAGCATT CAAACAAA TCGTACCGAA chr2L:559555-559675 79 2.90e-04 AATCACCGGC AAACAAAA CAGTGAAACC chr3R:29858907-29859027 6 2.90e-04 GCAAT AAACAAAA TGTGTTTACC chr3R:23156833-23156953 91 2.90e-04 TGCCGGGGGA AAATCAAA ATAAACGAAG chr2R:8948999-8949119 3 2.90e-04 TC CAAACAAA CAATAAACTT chr2L:19576935-19577055 104 3.21e-04 CATCTGGAGT AAAAAAAC CCAGTTTCC chrX:9106600-9106720 75 3.69e-04 AGACGTAAGA AAACCAAA TTGGTAGAAA chrX:8093239-8093359 56 3.69e-04 AAGCAGGCCA AAAGCAAA GTGCGTAGTT chr3R:31608255-31608375 3 3.93e-04 AT AAAACAAC GGTACAGCAA chr2L:19166140-19166260 37 3.93e-04 aacaacaacc aaaacaac ggcaacCATC chr2L:6343600-6343720 112 4.25e-04 TTGCTTCTTG AAAAACAA T chr3R:21618557-21618677 58 4.25e-04 ggaggagAGC AAAAACAA CTTGGCATAA chr3R:31571976-31572096 90 4.80e-04 TACAAAACGC AGAAAAAA GGTTGTCTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAMAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:9367664-9367784 4e-05 1_[+5]_111 chr2R:10429884-10430004 4e-05 7_[+5]_105 chr3L:18786452-18786572 4e-05 89_[+5]_23 chr2L:17204011-17204131 4e-05 51_[+5]_61 chrX:3379474-3379594 4e-05 101_[+5]_11 chrX:8112859-8112979 4e-05 53_[+5]_59 chrX:10739169-10739289 4e-05 46_[+5]_66 chr3R:25968674-25968794 4e-05 27_[+5]_85 chr3R:14477244-14477364 4e-05 31_[+5]_81 chr3R:9939466-9939586 4e-05 84_[+5]_28 chr3L:10226135-10226255 4e-05 104_[+5]_8 chr3R:21581815-21581935 4e-05 95_[+5]_17 chrX:22481376-22481496 4e-05 99_[+5]_13 chr2R:13952632-13952752 4e-05 7_[+5]_105 chr2R:21141872-21141992 7.1e-05 83_[+5]_29 chr2R:13587375-13587495 7.1e-05 50_[+5]_62 chr2R:8725628-8725748 7.1e-05 51_[+5]_61 chr2R:9439140-9439260 7.1e-05 3_[+5]_109 chr2R:17435839-17435959 7.1e-05 25_[+5]_87 chr3R:10330153-10330273 7.1e-05 66_[+5]_46 chr3L:9456239-9456359 7.1e-05 75_[+5]_37 chr3R:28333027-28333147 7.1e-05 92_[+5]_20 chr3R:9883633-9883753 7.1e-05 19_[+5]_93 chrX:6684223-6684343 7.1e-05 80_[+5]_32 chr3R:23228786-23228906 0.00014 90_[+5]_22 chrX:13612027-13612147 0.00014 96_[+5]_16 chrX:6661398-6661518 0.00014 111_[+5]_1 chr3R:31630494-31630614 0.00014 2_[+5]_110 chr3L:20198141-20198261 0.00014 106_[+5]_6 chr3L:835620-835740 0.00014 81_[+5]_31 chr2L:3480000-3480120 0.00014 10_[+5]_102 chrX:13332974-13333094 0.00017 102_[+5]_10 chr3R:26966912-26967032 0.00017 51_[+5]_61 chr2R:10617672-10617792 0.00017 91_[+5]_21 chr3L:3149171-3149291 0.00029 83_[+5]_29 chr2R:16027907-16028027 0.00029 95_[+5]_17 chrX:636810-636930 0.00029 102_[+5]_10 chr2L:559555-559675 0.00029 78_[+5]_34 chr3R:29858907-29859027 0.00029 5_[+5]_107 chr3R:23156833-23156953 0.00029 90_[+5]_22 chr2R:8948999-8949119 0.00029 2_[+5]_110 chr2L:19576935-19577055 0.00032 103_[+5]_9 chrX:9106600-9106720 0.00037 74_[+5]_38 chrX:8093239-8093359 0.00037 55_[+5]_57 chr3R:31608255-31608375 0.00039 2_[+5]_110 chr2L:19166140-19166260 0.00039 36_[+5]_76 chr2L:6343600-6343720 0.00042 111_[+5]_1 chr3R:21618557-21618677 0.00042 57_[+5]_55 chr3R:31571976-31572096 0.00048 89_[+5]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAMAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAMAAA width=8 seqs=49 chr3L:9367664-9367784 ( 2) AAAAAAAA 1 chr2R:10429884-10430004 ( 8) AAAAAAAA 1 chr3L:18786452-18786572 ( 90) AAAAAAAA 1 chr2L:17204011-17204131 ( 52) AAAAAAAA 1 chrX:3379474-3379594 ( 102) AAAAAAAA 1 chrX:8112859-8112979 ( 54) AAAAAAAA 1 chrX:10739169-10739289 ( 47) AAAAAAAA 1 chr3R:25968674-25968794 ( 28) AAAAAAAA 1 chr3R:14477244-14477364 ( 32) AAAAAAAA 1 chr3R:9939466-9939586 ( 85) AAAAAAAA 1 chr3L:10226135-10226255 ( 105) AAAAAAAA 1 chr3R:21581815-21581935 ( 96) AAAAAAAA 1 chrX:22481376-22481496 ( 100) AAAAAAAA 1 chr2R:13952632-13952752 ( 8) AAAAAAAA 1 chr2R:21141872-21141992 ( 84) AAAACAAA 1 chr2R:13587375-13587495 ( 51) AAAACAAA 1 chr2R:8725628-8725748 ( 52) AAAACAAA 1 chr2R:9439140-9439260 ( 4) AAAACAAA 1 chr2R:17435839-17435959 ( 26) AAAACAAA 1 chr3R:10330153-10330273 ( 67) AAAACAAA 1 chr3L:9456239-9456359 ( 76) AAAACAAA 1 chr3R:28333027-28333147 ( 93) AAAACAAA 1 chr3R:9883633-9883753 ( 20) AAAACAAA 1 chrX:6684223-6684343 ( 81) AAAACAAA 1 chr3R:23228786-23228906 ( 91) CAAAAAAA 1 chrX:13612027-13612147 ( 97) AAATAAAA 1 chrX:6661398-6661518 ( 112) AAATAAAA 1 chr3R:31630494-31630614 ( 3) AAATAAAA 1 chr3L:20198141-20198261 ( 107) AAATAAAA 1 chr3L:835620-835740 ( 82) CAAAAAAA 1 chr2L:3480000-3480120 ( 11) CAAAAAAA 1 chrX:13332974-13333094 ( 103) AAAAGAAA 1 chr3R:26966912-26967032 ( 52) AAAAGAAA 1 chr2R:10617672-10617792 ( 92) AAAAGAAA 1 chr3L:3149171-3149291 ( 84) AAAGAAAA 1 chr2R:16027907-16028027 ( 96) AAAGAAAA 1 chrX:636810-636930 ( 103) CAAACAAA 1 chr2L:559555-559675 ( 79) AAACAAAA 1 chr3R:29858907-29859027 ( 6) AAACAAAA 1 chr3R:23156833-23156953 ( 91) AAATCAAA 1 chr2R:8948999-8949119 ( 3) CAAACAAA 1 chr2L:19576935-19577055 ( 104) AAAAAAAC 1 chrX:9106600-9106720 ( 75) AAACCAAA 1 chrX:8093239-8093359 ( 56) AAAGCAAA 1 chr3R:31608255-31608375 ( 3) AAAACAAC 1 chr2L:19166140-19166260 ( 37) AAAACAAC 1 chr2L:6343600-6343720 ( 112) AAAAACAA 1 chr3R:21618557-21618677 ( 58) AAAAACAA 1 chr3R:31571976-31572096 ( 90) AGAAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAMAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2866 E= 2.9e+004 167 -110 -1226 -1226 180 -1226 -341 -1226 183 -1226 -1226 -1226 146 -184 -183 -147 107 67 -183 -1226 177 -242 -1226 -1226 183 -1226 -1226 -1226 174 -184 -1226 -1226 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAMAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 2.9e+004 0.897959 0.102041 0.000000 0.000000 0.979592 0.000000 0.020408 0.000000 1.000000 0.000000 0.000000 0.000000 0.775510 0.061224 0.061224 0.102041 0.591837 0.346939 0.061224 0.000000 0.959184 0.040816 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.938776 0.061224 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAMAAA MEME-5 regular expression -------------------------------------------------------------------------------- AAAA[AC]AAA -------------------------------------------------------------------------------- Time 31.04 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13952632-13952752 6.96e-02 7_[+5(4.00e-05)]_105 chrX:22481376-22481496 6.29e-03 96_[+5(4.00e-05)]_16 chrX:8093239-8093359 5.29e-02 64_[+1(4.28e-05)]_48 chr3L:17529577-17529697 1.26e-02 [+3(5.48e-05)]_112 chr2L:3480000-3480120 4.68e-06 34_[+1(1.11e-05)]_24_[+4(5.27e-06)]_\ 46 chrX:6684223-6684343 1.64e-04 48_[+2(8.54e-05)]_24_[+5(7.11e-05)]_\ 32 chr3L:630741-630861 1.09e-02 55_[+1(1.98e-05)]_36_[+2(7.41e-05)]_\ 13 chrX:13749219-13749339 3.93e-02 71_[+1(5.72e-05)]_41 chr3L:5655242-5655362 1.13e-02 11_[+3(9.48e-05)]_10_[+1(1.11e-05)]_\ 83 chr3R:21581815-21581935 1.84e-05 44_[+1(4.28e-05)]_43_[+5(4.00e-05)]_\ 3_[+2(5.96e-05)]_6 chr2R:8149942-8150062 3.29e-01 120 chr3R:9883633-9883753 5.73e-04 19_[+5(7.11e-05)]_48_[+3(3.09e-05)]_\ 37 chr2R:7805447-7805567 4.33e-03 20_[+1(4.28e-05)]_36_[+3(9.48e-05)]_\ 48 chr3R:11759606-11759726 1.07e-01 120 chr3R:27129850-27129970 3.34e-04 44_[+1(1.11e-05)]_22_[+3(9.48e-05)]_\ 38 chr2R:17721667-17721787 3.06e-01 78_[+1(4.28e-05)]_34 chrX:13752684-13752804 2.26e-01 120 chrX:5880221-5880341 1.03e-04 28_[+2(1.45e-05)]_2_[+2(7.41e-05)]_\ 40_[+1(4.28e-05)]_26 chr3R:14051619-14051739 3.30e-01 120 chr3L:4221882-4222002 1.49e-01 120 chr2R:18445835-18445955 3.27e-01 120 chr3R:9874256-9874376 4.00e-03 12_[+3(3.09e-05)]_7_[+1(4.28e-05)]_\ 85 chr3L:4411612-4411732 1.67e-01 1_[+1(4.28e-05)]_65_[+1(5.72e-05)]_\ 38 chr2L:16273646-16273766 5.12e-03 76_[+1(1.98e-05)]_16_[+3(3.09e-05)]_\ 12 chr2L:3476524-3476644 7.09e-01 120 chr3L:20519320-20519440 3.04e-03 70_[+1(4.28e-05)]_42 chr2R:10838691-10838811 1.72e-04 75_[+1(1.11e-05)]_37 chr3L:11691540-11691660 2.27e-01 120 chr2R:21505913-21506033 5.02e-02 67_[+3(3.09e-05)]_45 chr3R:28333027-28333147 1.05e-04 17_[+2(1.45e-05)]_[+2(5.96e-05)]_59_\ [+5(7.11e-05)]_20 chrX:21388899-21389019 1.13e-01 24_[+2(2.58e-05)]_88 chr2R:8948999-8949119 1.80e-04 43_[+2(3.71e-05)]_69 chr3R:25033383-25033503 8.86e-01 120 chrX:9155735-9155855 2.20e-01 120 chr3L:10226135-10226255 2.81e-02 101_[+5(4.00e-05)]_11 chr2L:19166140-19166260 1.14e-03 76_[+1(7.51e-05)]_36 chr3R:9873120-9873240 1.23e-03 120 chrX:3764373-3764493 3.17e-01 120 chrX:18789420-18789540 5.00e-02 120 chr3R:9939466-9939586 3.29e-02 83_[+5(4.00e-05)]_29 chr2R:18442885-18443005 1.24e-03 64_[+3(5.48e-05)]_48 chr3R:30013325-30013445 1.84e-01 120 chr3L:13356433-13356553 5.35e-01 120 chr3R:23156833-23156953 7.92e-02 120 chr2L:10264253-10264373 5.75e-04 44_[+3(3.09e-05)]_23_[+1(1.11e-05)]_\ 37 chr2L:2804961-2805081 1.76e-01 120 chr2L:19576935-19577055 7.19e-04 26_[+2(1.45e-05)]_86 chr3R:11759037-11759157 1.16e-03 23_[+2(4.83e-05)]_51_[+1(1.98e-05)]_\ 30 chr3R:8979992-8980112 8.37e-02 120 chr2R:9549904-9550024 1.83e-01 27_[+1(5.72e-05)]_85 chr2L:821369-821489 4.48e-01 120 chr3R:14477244-14477364 1.82e-02 30_[+5(4.00e-05)]_82 chr3R:4951921-4952041 1.20e-01 73_[+3(5.48e-05)]_39 chr3L:7116066-7116186 5.06e-04 47_[+2(2.58e-05)]_9_[+1(4.28e-05)]_\ 48 chr2R:8947342-8947462 5.92e-02 76_[+1(5.72e-05)]_36 chr3R:29858907-29859027 2.56e-01 120 chr3L:548998-549118 6.78e-02 80_[+3(5.48e-05)]_32 chr2L:12046963-12047083 1.08e-01 112_[+3(5.48e-05)] chr2R:23906951-23907071 4.95e-01 120 chr2R:18531619-18531739 5.87e-02 26_[+1(1.11e-05)]_86 chr2L:12541468-12541588 2.52e-01 68_[+3(3.09e-05)]_8_[+3(9.48e-05)]_\ 28 chr3R:4803725-4803845 5.43e-03 43_[+1(4.28e-05)]_69 chrX:3414776-3414896 1.69e-02 88_[+3(9.48e-05)]_7_[+3(9.48e-05)]_\ 9 chr3R:21434229-21434349 4.62e-02 31_[+1(1.98e-05)]_81 chr2R:9551865-9551985 1.75e-01 120 chr3R:21618557-21618677 2.72e-02 83_[+1(4.28e-05)]_29 chr3R:27660683-27660803 3.33e-01 46_[+1(5.72e-05)]_66 chr2R:8106341-8106461 4.38e-01 120 chr2R:19267982-19268102 2.29e-01 120 chr3L:3083318-3083438 2.79e-01 120 chr3R:23110785-23110905 9.36e-01 120 chr3L:9456239-9456359 8.42e-03 75_[+5(7.11e-05)]_[+1(5.72e-05)]_29 chr3R:10330153-10330273 2.87e-02 66_[+5(7.11e-05)]_46 chr2R:11630102-11630222 9.39e-02 120 chr3R:9529383-9529503 5.04e-01 120 chr2R:10617672-10617792 3.45e-02 120 chr3L:224304-224424 5.41e-02 120 chrX:17652551-17652671 9.74e-01 120 chr3R:25968674-25968794 4.18e-02 24_[+5(4.00e-05)]_88 chr2L:16886724-16886844 1.60e-01 120 chr3R:21582015-21582135 7.22e-02 37_[+2(9.41e-05)]_75 chrX:18137006-18137126 1.81e-02 120 chr3L:11708357-11708477 4.53e-01 120 chr2R:9814164-9814284 7.73e-03 13_[+3(3.09e-05)]_46_[+3(3.09e-05)]_\ 45 chr3R:15328218-15328338 5.01e-02 94_[+3(5.48e-05)]_18 chr3R:11220036-11220156 1.38e-01 120 chrX:10739169-10739289 3.09e-04 45_[+5(4.00e-05)]_17_[+1(1.98e-05)]_\ 26_[+3(9.48e-05)]_8 chr2L:21573552-21573672 7.12e-02 120 chr3L:21346830-21346950 5.63e-02 13_[+1(1.98e-05)]_99 chr3R:26966912-26967032 5.81e-02 120 chrX:6279377-6279497 4.21e-01 120 chrX:3862428-3862548 3.49e-01 120 chrX:3378698-3378818 4.33e-02 72_[+2(1.45e-05)]_[+2(1.45e-05)]_32 chr3L:9349470-9349590 2.46e-02 41_[+1(1.11e-05)]_71 chr3L:835620-835740 3.67e-02 120 chrX:8112859-8112979 2.64e-02 52_[+5(4.00e-05)]_60 chr3R:15935077-15935197 9.56e-04 91_[+1(1.11e-05)]_[+3(5.48e-05)]_13 chr2L:9203545-9203665 1.95e-01 120 chr2L:13296291-13296411 2.47e-01 120 chr3R:21190886-21191006 1.13e-03 44_[+1(1.98e-05)]_46_[+3(3.09e-05)]_\ 14 chr2R:16011545-16011665 7.46e-02 100_[+1(5.72e-05)]_12 chr2L:20078964-20079084 2.05e-01 120 chr3L:140222-140342 9.55e-03 120 chrX:10184819-10184939 2.63e-01 120 chr3L:14554086-14554206 4.71e-02 88_[+1(1.98e-05)]_24 chr3R:16353293-16353413 2.66e-02 27_[+1(5.72e-05)]_71_[+3(9.48e-05)]_\ 6 chrX:3379474-3379594 7.86e-05 36_[+2(9.41e-05)]_54_[+5(4.00e-05)]_\ 14 chr3L:17843037-17843157 3.67e-02 120 chr3L:5810028-5810148 1.59e-01 45_[+1(1.98e-05)]_67 chr3R:21268699-21268819 4.22e-01 120 chr3L:11400902-11401022 4.19e-01 120 chr2L:16284393-16284513 1.50e-03 12_[+5(4.00e-05)]_[+5(4.00e-05)]_81_\ [+1(1.98e-05)]_3 chr2L:1723671-1723791 2.20e-02 91_[+1(4.28e-05)]_21 chr2L:19542562-19542682 7.17e-02 120 chr3L:16040524-16040644 5.45e-01 120 chrX:19146507-19146627 1.66e-01 22_[+3(5.48e-05)]_8_[+3(9.48e-05)]_\ 74 chr2R:9194901-9195021 9.77e-01 120 chrX:10365844-10365964 9.93e-04 52_[+1(7.51e-05)]_33_[+2(1.45e-05)]_\ [+2(5.96e-05)]_11 chrX:11557652-11557772 1.17e-01 120 chr2L:17204011-17204131 5.57e-02 51_[+5(4.00e-05)]_61 chr3R:27652455-27652575 1.59e-01 120 chr2L:6921238-6921358 4.10e-03 [+2(1.45e-05)]_10_[+2(2.58e-05)]_21_\ [+2(4.83e-05)]_65 chr2L:559555-559675 1.30e-02 6_[+2(3.71e-05)]_106 chr3L:20198141-20198261 2.22e-02 20_[+1(5.72e-05)]_92 chr3L:18786452-18786572 9.23e-05 22_[+2(5.96e-05)]_59_[+5(4.00e-05)]_\ 23 chr3R:31630494-31630614 3.39e-01 120 chr2R:17435839-17435959 6.72e-04 25_[+5(7.11e-05)]_66_[+1(1.11e-05)]_\ 13 chr2L:4973940-4974060 1.45e-01 120 chr2L:6481503-6481623 4.57e-01 120 chrX:16803347-16803467 1.84e-01 120 chr2R:10429884-10430004 1.20e-01 7_[+5(4.00e-05)]_105 chr3R:28811215-28811335 9.62e-03 85_[+3(5.48e-05)]_27 chr2R:9136805-9136925 5.80e-03 30_[+3(3.09e-05)]_82 chr2R:11637639-11637759 1.07e-04 53_[+4(5.27e-06)]_43_[+1(4.28e-05)]_\ 8 chr2R:9439140-9439260 1.70e-03 3_[+5(7.11e-05)]_30_[+1(5.72e-05)]_\ 71 chr2L:21629366-21629486 1.35e-03 1_[+2(1.45e-05)]_111 chr2L:2217242-2217362 5.01e-02 99_[+3(3.09e-05)]_13 chr3R:16356889-16357009 1.20e-01 41_[+1(7.51e-05)]_71 chrX:8493620-8493740 8.95e-01 120 chr3R:14063336-14063456 3.09e-01 120 chr2R:13038616-13038736 1.37e-01 76_[+3(9.48e-05)]_36 chr2L:8894351-8894471 3.52e-01 120 chr3L:6955433-6955553 3.59e-01 120 chrX:2254322-2254442 4.21e-01 120 chr3L:616984-617104 3.26e-01 24_[+3(5.48e-05)]_17_[+3(5.48e-05)]_\ 63 chrX:6756517-6756637 2.66e-01 120 chr3R:25215217-25215337 1.96e-02 87_[+3(5.48e-05)]_25 chr3R:21853723-21853843 1.52e-03 54_[+1(4.28e-05)]_20_[+2(1.45e-05)]_\ 4_[+2(5.96e-05)]_18 chr3R:31608255-31608375 2.99e-04 22_[+2(3.71e-05)]_90 chr2R:13015984-13016104 3.11e-02 78_[+1(1.98e-05)]_34 chr2R:8725628-8725748 1.09e-02 51_[+5(7.11e-05)]_61 chr3R:31571976-31572096 2.89e-01 120 chr3L:3225456-3225576 4.23e-01 120 chr2R:13587375-13587495 5.33e-02 50_[+5(7.11e-05)]_62 chrX:948340-948460 2.41e-01 120 chr2L:5225743-5225863 9.78e-02 71_[+3(9.48e-05)]_41 chr3R:24050701-24050821 7.94e-03 120 chr3L:20518288-20518408 5.86e-01 120 chrX:636810-636930 1.95e-04 52_[+1(1.98e-05)]_8_[+2(5.96e-05)]_\ 44 chrX:6661398-6661518 3.23e-03 120 chrX:19605187-19605307 2.72e-01 68_[+2(7.41e-05)]_44 chr3R:18412537-18412657 2.17e-03 23_[+1(7.51e-05)]_38_[+2(1.45e-05)]_\ 4_[+2(4.83e-05)]_31 chr3R:24598755-24598875 1.44e-02 47_[+4(5.27e-06)]_65 chr3R:9878118-9878238 8.31e-02 120 chrX:19168218-19168338 2.97e-01 120 chr3R:4381230-4381350 6.34e-01 120 chr3R:23337427-23337547 5.22e-01 120 chrX:14826076-14826196 6.72e-01 120 chr2L:16520128-16520248 3.71e-02 27_[+3(3.09e-05)]_85 chr2R:24962548-24962668 8.53e-04 107_[+4(5.27e-06)]_5 chr2L:207330-207450 6.37e-01 120 chrX:13612027-13612147 4.41e-02 120 chr2R:17590740-17590860 3.76e-01 120 chr3R:14575911-14576031 7.06e-01 120 chrX:793072-793192 1.98e-01 96_[+1(4.28e-05)]_16 chrX:20251235-20251355 9.48e-01 120 chr3L:15498904-15499024 6.96e-03 84_[+3(5.48e-05)]_28 chr2R:8122871-8122991 1.33e-01 44_[+3(3.09e-05)]_68 chrX:9319190-9319310 5.87e-01 120 chr2L:10246998-10247118 3.70e-01 120 chr2L:17784745-17784865 7.56e-01 120 chr2R:9712321-9712441 6.63e-02 70_[+1(1.11e-05)]_42 chr3L:698891-699011 3.13e-01 120 chr2R:16027907-16028027 3.61e-01 120 chrX:11137721-11137841 3.34e-01 38_[+2(8.54e-05)]_74 chr2L:1654344-1654464 1.57e-01 120 chr3L:3374171-3374291 8.26e-01 120 chr2R:18440146-18440266 6.04e-01 120 chr2R:21090953-21091073 9.88e-01 120 chr3L:15554099-15554219 1.86e-02 8_[+4(1.21e-05)]_104 chr3L:3149171-3149291 3.53e-01 120 chr3R:27925266-27925386 4.61e-01 120 chr2R:21091809-21091929 7.23e-01 120 chr2R:24986010-24986130 1.64e-01 120 chr3R:11243287-11243407 3.26e-01 120 chr3L:9899416-9899536 4.36e-02 120 chr2R:16104643-16104763 7.72e-03 75_[+1(5.72e-05)]_37 chr2R:18834693-18834813 7.90e-02 120 chrX:6179590-6179710 5.68e-02 47_[+3(9.48e-05)]_65 chr2L:19140990-19141110 8.55e-01 120 chr3R:25888443-25888563 6.59e-01 120 chr3R:24518215-24518335 4.47e-01 120 chr3R:27559083-27559203 3.82e-02 120 chrX:9106600-9106720 1.13e-01 120 chr3R:6382933-6383053 3.53e-01 120 chr3R:21073303-21073423 2.28e-01 85_[+1(7.51e-05)]_27 chrX:3538909-3539029 7.30e-02 73_[+5(4.00e-05)]_[+5(4.00e-05)]_\ [+5(4.00e-05)]_23 chr3L:7359864-7359984 3.17e-02 36_[+1(1.11e-05)]_76 chr2L:19571926-19572046 6.41e-03 109_[+2(1.45e-05)]_3 chrX:13845891-13846011 7.88e-01 120 chr2R:8030972-8031092 7.18e-03 49_[+4(1.21e-05)]_63 chrX:2184656-2184776 6.79e-01 120 chrX:10764322-10764442 8.75e-01 120 chr2L:2999232-2999352 1.98e-01 120 chr2R:21141872-21141992 8.59e-02 83_[+5(7.11e-05)]_29 chr3L:5765474-5765594 5.04e-01 120 chrX:17738311-17738431 1.58e-01 120 chr3R:19903406-19903526 3.09e-01 120 chrX:16781197-16781317 3.52e-03 12_[+2(3.71e-05)]_100 chr3L:648296-648416 9.86e-02 120 chr2L:6343600-6343720 6.22e-03 120 chrX:8193215-8193335 7.95e-01 120 chr3R:29503502-29503622 5.37e-01 120 chr2R:20562318-20562438 9.43e-01 120 chr2L:21310837-21310957 1.40e-01 120 chr2R:24293580-24293700 4.30e-02 8_[+3(3.09e-05)]_104 chrX:11925359-11925479 8.58e-01 120 chr2L:13512284-13512404 6.79e-01 120 chr3L:9367664-9367784 5.48e-02 1_[+5(4.00e-05)]_111 chr2R:23988446-23988566 9.58e-01 120 chrX:19665974-19666094 1.59e-01 120 chr2R:23702400-23702520 5.89e-01 120 chr2L:8239811-8239931 5.37e-01 120 chrX:18366162-18366282 4.29e-01 120 chr2R:17444630-17444750 1.89e-01 120 chr3L:5813172-5813292 9.93e-01 120 chrX:13332974-13333094 1.58e-02 [+2(1.45e-05)]_112 chr2L:18708038-18708158 3.70e-01 120 chr2L:8982662-8982782 2.70e-01 68_[+3(9.48e-05)]_4_[+3(9.48e-05)]_\ 32 chr3R:9874457-9874577 8.20e-02 38_[+2(2.58e-05)]_74 chr2L:10437482-10437602 5.06e-01 120 chr2R:17586073-17586193 5.15e-01 120 chr3R:24226913-24227033 4.24e-01 120 chr2L:14394799-14394919 5.25e-01 120 chr2R:9577989-9578109 1.98e-02 105_[+4(5.27e-06)]_7 chrX:8409219-8409339 1.20e-01 4_[+2(9.41e-05)]_108 chrX:11379246-11379366 1.08e-01 120 chr3R:12985980-12986100 5.63e-01 120 chr3R:23228786-23228906 9.39e-02 120 chr2R:17535633-17535753 4.68e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************