******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG13424.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:8080811-8080931 1.0000 120 chr3L:14172657-14172777 1.0000 120 chr3L:7811034-7811154 1.0000 120 chr2L:7150912-7151032 1.0000 120 chr3R:23969580-23969700 1.0000 120 chr2L:16869160-16869280 1.0000 120 chrX:14634850-14634970 1.0000 120 chr2R:18850657-18850777 1.0000 120 chr3R:12562161-12562281 1.0000 120 chr2R:5128312-5128432 1.0000 120 chr3L:3983509-3983629 1.0000 120 chr3L:10893587-10893707 1.0000 120 chrX:18004309-18004429 1.0000 120 chr2R:16847108-16847228 1.0000 120 chr3R:8867832-8867952 1.0000 120 chrX:12744381-12744501 1.0000 120 chr3L:19073943-19074063 1.0000 120 chr3L:11785452-11785572 1.0000 120 chr2R:20257469-20257589 1.0000 120 chr3L:2845321-2845441 1.0000 120 chr3L:4000845-4000965 1.0000 120 chr3L:6157729-6157849 1.0000 120 chrX:9350429-9350549 1.0000 120 chr3R:18508382-18508502 1.0000 120 chrX:7706633-7706753 1.0000 120 chrX:3019741-3019861 1.0000 120 chr2R:19860369-19860489 1.0000 120 chr2R:20572598-20572718 1.0000 120 chr3L:10827437-10827557 1.0000 120 chrX:9899877-9899997 1.0000 120 chr2R:23385700-23385820 1.0000 120 chr3R:27426884-27427004 1.0000 120 chr2R:12951510-12951630 1.0000 120 chr3L:6752884-6753004 1.0000 120 chr3R:24206882-24207002 1.0000 120 chr2R:22789404-22789524 1.0000 120 chr3L:18782121-18782241 1.0000 120 chr2R:5122266-5122386 1.0000 120 chr3L:13903453-13903573 1.0000 120 chr2R:20195218-20195338 1.0000 120 chr2R:9903452-9903572 1.0000 120 chr3R:24906166-24906286 1.0000 120 chrX:12937899-12938019 1.0000 120 chr3L:9371120-9371240 1.0000 120 chr2L:3100991-3101111 1.0000 120 chrX:3455538-3455658 1.0000 120 chr3R:24798679-24798799 1.0000 120 chr2R:16202913-16203033 1.0000 120 chr2R:11756124-11756244 1.0000 120 chr3L:3786953-3787073 1.0000 120 chrX:20631313-20631433 1.0000 120 chr3R:13549638-13549758 1.0000 120 chrX:21322716-21322836 1.0000 120 chr3L:9424624-9424744 1.0000 120 chrX:15121915-15122035 1.0000 120 chr2R:7241703-7241823 1.0000 120 chrX:6542471-6542591 1.0000 120 chr3R:11663698-11663818 1.0000 120 chr3R:16769529-16769649 1.0000 120 chr3L:18102202-18102322 1.0000 120 chr3L:18227459-18227579 1.0000 120 chr2L:14537578-14537698 1.0000 120 chr3R:28677010-28677130 1.0000 120 chr3R:21134140-21134260 1.0000 120 chr3R:30235341-30235461 1.0000 120 chr2L:2374025-2374145 1.0000 120 chr2L:6595160-6595280 1.0000 120 chrX:12225398-12225518 1.0000 120 chr3L:815420-815540 1.0000 120 chr3L:7510830-7510950 1.0000 120 chr3R:6468121-6468241 1.0000 120 chrX:12547794-12547914 1.0000 120 chr3L:8951143-8951263 1.0000 120 chr2R:12547708-12547828 1.0000 120 chr3R:12985875-12985995 1.0000 120 chr3R:12630454-12630574 1.0000 120 chr3R:14095581-14095701 1.0000 120 chr2L:5519999-5520119 1.0000 120 chr2R:18994177-18994297 1.0000 120 chr3R:23817713-23817833 1.0000 120 chr2L:7395946-7396066 1.0000 120 chrX:11379282-11379402 1.0000 120 chr2L:7871927-7872047 1.0000 120 chr2L:7492032-7492152 1.0000 120 chr2L:3805329-3805449 1.0000 120 chr3R:8955063-8955183 1.0000 120 chr2R:10122606-10122726 1.0000 120 chr3L:10767308-10767428 1.0000 120 chr2R:18273471-18273591 1.0000 120 chr3R:15139629-15139749 1.0000 120 chr3L:16482279-16482399 1.0000 120 chrX:17782133-17782253 1.0000 120 chrX:5970529-5970649 1.0000 120 chr3R:11661851-11661971 1.0000 120 chrX:16930469-16930589 1.0000 120 chr3R:29581621-29581741 1.0000 120 chr2R:13008296-13008416 1.0000 120 chr3L:13356169-13356289 1.0000 120 chrX:17293512-17293632 1.0000 120 chr2L:10760721-10760841 1.0000 120 chr3L:6189166-6189286 1.0000 120 chr3R:15351104-15351224 1.0000 120 chrX:11885504-11885624 1.0000 120 chr2R:15155027-15155147 1.0000 120 chr3L:8629086-8629206 1.0000 120 chr2L:15908613-15908733 1.0000 120 chrX:16854878-16854998 1.0000 120 chrX:14234130-14234250 1.0000 120 chrX:13274614-13274734 1.0000 120 chr2R:17533795-17533915 1.0000 120 chrX:16580091-16580211 1.0000 120 chrX:16944106-16944226 1.0000 120 chr3R:25168380-25168500 1.0000 120 chr3R:11852097-11852217 1.0000 120 chrX:8125352-8125472 1.0000 120 chr2L:17588860-17588980 1.0000 120 chr2R:10681389-10681509 1.0000 120 chr2R:14357280-14357400 1.0000 120 chr3R:22878544-22878664 1.0000 120 chrX:8445032-8445152 1.0000 120 chr3L:11074606-11074726 1.0000 120 chr3R:10520675-10520795 1.0000 120 chr2L:8602753-8602873 1.0000 120 chr2L:17747240-17747360 1.0000 120 chr2R:20552075-20552195 1.0000 120 chr2L:8746399-8746519 1.0000 120 chr3R:26888463-26888583 1.0000 120 chr3R:8673951-8674071 1.0000 120 chr2R:10123679-10123799 1.0000 120 chr3R:15250653-15250773 1.0000 120 chr3R:22121386-22121506 1.0000 120 chr3R:5413060-5413180 1.0000 120 chr3R:12406347-12406467 1.0000 120 chrX:9135196-9135316 1.0000 120 chr3R:14729351-14729471 1.0000 120 chr2R:24943223-24943343 1.0000 120 chr3L:3437336-3437456 1.0000 120 chr3R:24010961-24011081 1.0000 120 chr3R:14657144-14657264 1.0000 120 chrX:10573650-10573770 1.0000 120 chr3L:12270056-12270176 1.0000 120 chr2L:10428666-10428786 1.0000 120 chr3R:26012952-26013072 1.0000 120 chr2R:12727633-12727753 1.0000 120 chr3L:18748370-18748490 1.0000 120 chr3L:22471735-22471855 1.0000 120 chr2L:9235635-9235755 1.0000 120 chr2R:11640972-11641092 1.0000 120 chr3L:3380596-3380716 1.0000 120 chr2L:7494387-7494507 1.0000 120 chrX:9193736-9193856 1.0000 120 chr2L:9206524-9206644 1.0000 120 chr2R:15478010-15478130 1.0000 120 chrX:5285977-5286097 1.0000 120 chrX:11108273-11108393 1.0000 120 chr3R:25184166-25184286 1.0000 120 chr3L:18250857-18250977 1.0000 120 chr2R:14576075-14576195 1.0000 120 chrX:14743925-14744045 1.0000 120 chr3R:16496354-16496474 1.0000 120 chr3L:13905661-13905781 1.0000 120 chr2L:5326942-5327062 1.0000 120 chr2R:11275828-11275948 1.0000 120 chr3L:16131677-16131797 1.0000 120 chr2R:8002292-8002412 1.0000 120 chr3L:16582830-16582950 1.0000 120 chrX:15297087-15297207 1.0000 120 chrX:7617069-7617189 1.0000 120 chr2L:8982732-8982852 1.0000 120 chrX:1880351-1880471 1.0000 120 chr3L:2411678-2411798 1.0000 120 chr2L:10858263-10858383 1.0000 120 chr2R:13923505-13923625 1.0000 120 chr3R:16837935-16838055 1.0000 120 chr3L:15592743-15592863 1.0000 120 chr2R:9681971-9682091 1.0000 120 chr2R:17813677-17813797 1.0000 120 chr3L:6981918-6982038 1.0000 120 chr2R:21709665-21709785 1.0000 120 chr2L:16703884-16704004 1.0000 120 chrX:17330400-17330520 1.0000 120 chr2R:8064410-8064530 1.0000 120 chr2L:6874662-6874782 1.0000 120 chr3R:26014345-26014465 1.0000 120 chr2R:8045116-8045236 1.0000 120 chr3L:18782320-18782440 1.0000 120 chr2L:15061459-15061579 1.0000 120 chr3R:19031309-19031429 1.0000 120 chr2L:18305163-18305283 1.0000 120 chrX:15384107-15384227 1.0000 120 chr3L:9066201-9066321 1.0000 120 chrX:9652149-9652269 1.0000 120 chr3R:17584199-17584319 1.0000 120 chr3R:9370568-9370688 1.0000 120 chr3L:20516987-20517107 1.0000 120 chr2R:22531109-22531229 1.0000 120 chr3R:13831932-13832052 1.0000 120 chr2R:18834837-18834957 1.0000 120 chr3R:18311406-18311526 1.0000 120 chr3R:16771732-16771852 1.0000 120 chr3R:12722662-12722782 1.0000 120 chr3R:21839701-21839821 1.0000 120 chr2L:5238317-5238437 1.0000 120 chr3R:19848070-19848190 1.0000 120 chr3R:5470712-5470832 1.0000 120 chr3R:18393590-18393710 1.0000 120 chr3R:10048166-10048286 1.0000 120 chr2L:6473149-6473269 1.0000 120 chrX:13258784-13258904 1.0000 120 chr3L:3855344-3855464 1.0000 120 chr2L:16709743-16709863 1.0000 120 chrX:2061280-2061400 1.0000 120 chr2R:15381220-15381340 1.0000 120 chr3L:18822504-18822624 1.0000 120 chr3L:18786834-18786954 1.0000 120 chr2L:6339728-6339848 1.0000 120 chr3R:8960440-8960560 1.0000 120 chr2R:17062639-17062759 1.0000 120 chr3L:361333-361453 1.0000 120 chrX:13756998-13757118 1.0000 120 chr2L:16547796-16547916 1.0000 120 chr3L:12644472-12644592 1.0000 120 chr3L:13197665-13197785 1.0000 120 chr2L:10468566-10468686 1.0000 120 chr2L:20416855-20416975 1.0000 120 chr3L:8751385-8751505 1.0000 120 chrX:6657079-6657199 1.0000 120 chr2R:18398329-18398449 1.0000 120 chr3L:15921277-15921397 1.0000 120 chr3R:22862135-22862255 1.0000 120 chr3L:11398805-11398925 1.0000 120 chr3L:14545562-14545682 1.0000 120 chr2L:3003539-3003659 1.0000 120 chr2L:6830440-6830560 1.0000 120 chr3R:15837160-15837280 1.0000 120 chr2R:11738632-11738752 1.0000 120 chr2R:12468422-12468542 1.0000 120 chr3L:16087581-16087701 1.0000 120 chr3R:24830044-24830164 1.0000 120 chr2R:9286626-9286746 1.0000 120 chr2L:20093958-20094078 1.0000 120 chr3L:10843460-10843580 1.0000 120 chr2L:10856652-10856772 1.0000 120 chr3L:6816362-6816482 1.0000 120 chr3L:8063558-8063678 1.0000 120 chr2L:20097268-20097388 1.0000 120 chr3L:6706032-6706152 1.0000 120 chr3R:16834800-16834920 1.0000 120 chr2L:13366249-13366369 1.0000 120 chr3R:18670579-18670699 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG13424/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG13424.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.374 C 0.131 G 0.128 T 0.367 Background letter frequencies (from file dataset with add-one prior applied): A 0.374 C 0.131 G 0.128 T 0.367 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CGSCGGMG MEME-1 width = 8 sites = 5 llr = 63 E-value = 3.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGSCGGMG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :2::::42 pos.-specific C a:68::6: probability G :842aa:8 matrix T :::::::: bits 3.0 * ** 2.7 * ** 2.4 * ** 2.1 ****** * Relative 1.8 ****** * Entropy 1.5 ******** (18.3 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CGCCGGCG consensus AGG AA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSCGGMG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14357280-14357400 90 1.56e-07 ATCGGTATTT CGGCGGCG CCACTTTCTT chr3R:13831932-13832052 107 4.59e-07 ATACACTGTG CGCCGGAG AATTGA chr2R:17062639-17062759 61 1.22e-06 GAATAACTAT CGCCGGCA TATATCGATG chr3R:16771732-16771852 40 1.89e-06 AGTGGTGAAG CGCGGGAG AACTTTCAAA chrX:16930469-16930589 1 1.89e-06 . CAGCGGCG GTCAGCAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSCGGMG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14357280-14357400 1.6e-07 89_[+1]_23 chr3R:13831932-13832052 4.6e-07 106_[+1]_6 chr2R:17062639-17062759 1.2e-06 60_[+1]_52 chr3R:16771732-16771852 1.9e-06 39_[+1]_73 chrX:16930469-16930589 1.9e-06 [+1]_112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSCGGMG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGSCGGMG width=8 seqs=5 chr2R:14357280-14357400 ( 90) CGGCGGCG 1 chr3R:13831932-13832052 ( 107) CGCCGGAG 1 chr2R:17062639-17062759 ( 61) CGCCGGCA 1 chr3R:16771732-16771852 ( 40) CGCGGGAG 1 chrX:16930469-16930589 ( 1) CAGCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSCGGMG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.4073 E= 3.3e+002 -897 293 -897 -897 -90 -897 264 -897 -897 220 164 -897 -897 261 64 -897 -897 -897 296 -897 -897 -897 296 -897 10 220 -897 -897 -90 -897 264 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSCGGMG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 3.3e+002 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.800000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGSCGGMG MEME-1 regular expression -------------------------------------------------------------------------------- C[GA][CG][CG]GG[CA][GA] -------------------------------------------------------------------------------- Time 7.53 secs. ******************************************************************************** ******************************************************************************** MOTIF CSGCSCAC MEME-2 width = 8 sites = 3 llr = 42 E-value = 2.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSGCSCAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::::a: pos.-specific C a7:a7a:a probability G :3a:3::: matrix T :::::::: bits 3.0 * ** * * 2.7 * ** * * 2.4 * ** * * 2.1 ****** * Relative 1.8 ****** * Entropy 1.5 ******** (20.2 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCGCCCAC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGCSCAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:18508382-18508502 5 2.42e-07 ACCA CCGCCCAC AACTACACAG chr3L:18822504-18822624 73 7.15e-07 TCGATATCTT CGGCCCAC TCGACAACCC chr3R:21839701-21839821 30 7.15e-07 TTTAAAGCTA CCGCGCAC TTTACTTTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGCSCAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:18508382-18508502 2.4e-07 4_[+2]_108 chr3L:18822504-18822624 7.1e-07 72_[+2]_40 chr3R:21839701-21839821 7.1e-07 29_[+2]_83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGCSCAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSGCSCAC width=8 seqs=3 chr3R:18508382-18508502 ( 5) CCGCCCAC 1 chr3L:18822504-18822624 ( 73) CGGCCCAC 1 chr3R:21839701-21839821 ( 30) CCGCGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGCSCAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 2.5e+003 -823 293 -823 -823 -823 235 138 -823 -823 -823 296 -823 -823 293 -823 -823 -823 235 138 -823 -823 293 -823 -823 141 -823 -823 -823 -823 293 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGCSCAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.5e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGCSCAC MEME-2 regular expression -------------------------------------------------------------------------------- C[CG]GC[CG]CAC -------------------------------------------------------------------------------- Time 13.78 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGSCRGG MEME-3 width = 8 sites = 2 llr = 27 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGSCRGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::5:: pos.-specific C :::5a::: probability G a:a5:5aa matrix T :a:::::: bits 3.0 * * * ** 2.7 * * * ** 2.4 * * * ** 2.1 * *** ** Relative 1.8 * *** ** Entropy 1.5 ***** ** (19.4 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GTGCCAGG consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGSCRGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:24830044-24830164 73 4.28e-07 TGTCCTTCTA GTGCCGGG ATGCATAGCA chr3R:19848070-19848190 34 1.05e-06 GTCGACTTGA GTGGCAGG CTGATAAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGSCRGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:24830044-24830164 4.3e-07 72_[+3]_40 chr3R:19848070-19848190 1e-06 33_[+3]_79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGSCRGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGSCRGG width=8 seqs=2 chr3R:24830044-24830164 ( 73) GTGCCGGG 1 chr3R:19848070-19848190 ( 34) GTGGCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGSCRGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 1.0e+004 -765 -765 296 -765 -765 -765 -765 144 -765 -765 296 -765 -765 193 196 -765 -765 293 -765 -765 42 -765 196 -765 -765 -765 296 -765 -765 -765 296 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGSCRGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGSCRGG MEME-3 regular expression -------------------------------------------------------------------------------- GTG[CG]C[AG]GG -------------------------------------------------------------------------------- Time 20.02 secs. ******************************************************************************** ******************************************************************************** MOTIF GYAGATSC MEME-4 width = 8 sites = 9 llr = 99 E-value = 5.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYAGATSC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a:a1:: pos.-specific C :7::::6a probability G a::a:14: matrix T :3:::8:: bits 3.0 * * * 2.7 * * * 2.4 * * * 2.1 * * ** Relative 1.8 * * ** Entropy 1.5 ***** ** (15.8 bits) 1.2 ***** ** 0.9 ***** ** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCAGATCC consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAGATSC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2061280-2061400 7 1.89e-06 AGACAT GCAGATCC ATTTGTTAGT chr2R:10123679-10123799 97 1.89e-06 AGTTAGTTCC GCAGATCC GTAATAATTT chrX:20631313-20631433 6 1.89e-06 AAAAT GCAGATCC TTTGGATTGG chr3L:14545562-14545682 36 3.74e-06 TGGGTGACGA GCAGATGC GATATGCTTT chr3L:12644472-12644592 45 5.04e-06 TTCAGCCAGA GCAGAGGC TATCATTAAA chr2R:15155027-15155147 63 1.03e-05 TCATTGATTT GTAGATCC CAACATAAAC chr3R:24206882-24207002 32 1.03e-05 CATAGCTATG GTAGATCC TTTGATCCGC chr3L:3437336-3437456 94 1.55e-05 GATGTGCCGT GTAGATGC AGATACATGA chr3R:16834800-16834920 37 1.93e-05 TTAGCCGTCA GCAGAAGC GATTGACTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAGATSC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2061280-2061400 1.9e-06 6_[+4]_106 chr2R:10123679-10123799 1.9e-06 96_[+4]_16 chrX:20631313-20631433 1.9e-06 5_[+4]_107 chr3L:14545562-14545682 3.7e-06 35_[+4]_77 chr3L:12644472-12644592 5e-06 44_[+4]_68 chr2R:15155027-15155147 1e-05 62_[+4]_50 chr3R:24206882-24207002 1e-05 31_[+4]_81 chr3L:3437336-3437456 1.6e-05 93_[+4]_19 chr3R:16834800-16834920 1.9e-05 36_[+4]_76 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAGATSC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYAGATSC width=8 seqs=9 chrX:2061280-2061400 ( 7) GCAGATCC 1 chr2R:10123679-10123799 ( 97) GCAGATCC 1 chrX:20631313-20631433 ( 6) GCAGATCC 1 chr3L:14545562-14545682 ( 36) GCAGATGC 1 chr3L:12644472-12644592 ( 45) GCAGAGGC 1 chr2R:15155027-15155147 ( 63) GTAGATCC 1 chr3R:24206882-24207002 ( 32) GTAGATCC 1 chr3L:3437336-3437456 ( 94) GTAGATGC 1 chr3R:16834800-16834920 ( 37) GCAGAAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAGATSC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4638 E= 5.3e+003 -982 -982 296 -982 -982 235 -982 -14 142 -982 -982 -982 -982 -982 296 -982 142 -982 -982 -982 -175 -982 -21 108 -982 209 179 -982 -982 293 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAGATSC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 5.3e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.111111 0.000000 0.111111 0.777778 0.000000 0.555556 0.444444 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAGATSC MEME-4 regular expression -------------------------------------------------------------------------------- G[CT]AGAT[CG]C -------------------------------------------------------------------------------- Time 26.27 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGSCCW MEME-5 width = 8 sites = 14 llr = 141 E-value = 4.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGSCCW MEME-5 Description -------------------------------------------------------------------------------- Simplified A :11::2:6 pos.-specific C :7::66a: probability G a::a41:: matrix T :19::1:4 bits 3.0 * * * 2.7 * * * 2.4 * * * 2.1 * ** * Relative 1.8 * ** * Entropy 1.5 ** ** * (14.5 bits) 1.2 ***** * 0.9 ******* 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCTGCCCA consensus GA T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGSCCW MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:20097268-20097388 95 6.62e-07 CTATCTAAAG GCTGCCCA TGCTAGAAAC chr2R:17062639-17062759 40 6.62e-07 CTTGAACAAT GCTGCCCA GCAGAATAAC chr2L:5326942-5327062 68 2.59e-06 ATTGATTTTA GCTGGCCT CATAGCTTCC chr3R:15351104-15351224 91 5.13e-06 ATTTAGCTAA GCTGCACA CATTTCTATC chr3L:6189166-6189286 18 7.61e-06 GCGTTTCAGG GCTGGACA ATCAATGTTT chr3R:18508382-18508502 34 9.47e-06 AAACTAAACA GCTGCTCA AATAGATATT chrX:2061280-2061400 63 1.64e-05 AATGGCTGAC GCTGCACT TCCGCTTTCA chr2R:24943223-24943343 73 1.64e-05 ATTGTATATT GTTGCCCA TTCATTATGA chr2R:11738632-11738752 3 2.49e-05 AG GCAGGCCA AGTGCACTGA chr3L:18822504-18822624 113 2.49e-05 AGTACGTGGT GCTGGGCT chr2R:20552075-20552195 54 2.49e-05 AAAACATTGC GTTGGCCA ACGGGTTGAA chrX:12547794-12547914 80 2.49e-05 AAAAAAATGA GATGGCCA CTGACTTACA chr2L:8080811-8080931 48 2.68e-05 CCCTGAATAA GCTGCTCT TTAAAAATAA chrX:16580091-16580211 51 3.11e-05 CACTGCGGAA GATGCCCT TAATGCCAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGSCCW MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20097268-20097388 6.6e-07 94_[+5]_18 chr2R:17062639-17062759 6.6e-07 39_[+5]_73 chr2L:5326942-5327062 2.6e-06 67_[+5]_45 chr3R:15351104-15351224 5.1e-06 90_[+5]_22 chr3L:6189166-6189286 7.6e-06 17_[+5]_95 chr3R:18508382-18508502 9.5e-06 33_[+5]_79 chrX:2061280-2061400 1.6e-05 62_[+5]_50 chr2R:24943223-24943343 1.6e-05 72_[+5]_40 chr2R:11738632-11738752 2.5e-05 2_[+5]_110 chr3L:18822504-18822624 2.5e-05 112_[+5] chr2R:20552075-20552195 2.5e-05 53_[+5]_59 chrX:12547794-12547914 2.5e-05 79_[+5]_33 chr2L:8080811-8080931 2.7e-05 47_[+5]_65 chrX:16580091-16580211 3.1e-05 50_[+5]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGSCCW MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGSCCW width=8 seqs=14 chr2L:20097268-20097388 ( 95) GCTGCCCA 1 chr2R:17062639-17062759 ( 40) GCTGCCCA 1 chr2L:5326942-5327062 ( 68) GCTGGCCT 1 chr3R:15351104-15351224 ( 91) GCTGCACA 1 chr3L:6189166-6189286 ( 18) GCTGGACA 1 chr3R:18508382-18508502 ( 34) GCTGCTCA 1 chrX:2061280-2061400 ( 63) GCTGCACT 1 chr2R:24943223-24943343 ( 73) GTTGCCCA 1 chr2R:11738632-11738752 ( 3) GCAGGCCA 1 chr3L:18822504-18822624 ( 113) GCTGGGCT 1 chr2R:20552075-20552195 ( 54) GTTGGCCA 1 chrX:12547794-12547914 ( 80) GATGGCCA 1 chr2L:8080811-8080931 ( 48) GCTGCTCT 1 chrX:16580091-16580211 ( 51) GATGCCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGSCCW MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2007 E= 4.9e+003 -1045 -1045 296 -1045 -139 245 -1045 -136 -239 -1045 -1045 134 -1045 -1045 296 -1045 -1045 213 174 -1045 -80 213 -84 -136 -1045 293 -1045 -1045 78 -1045 -1045 -4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGSCCW MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 4.9e+003 0.000000 0.000000 1.000000 0.000000 0.142857 0.714286 0.000000 0.142857 0.071429 0.000000 0.000000 0.928571 0.000000 0.000000 1.000000 0.000000 0.000000 0.571429 0.428571 0.000000 0.214286 0.571429 0.071429 0.142857 0.000000 1.000000 0.000000 0.000000 0.642857 0.000000 0.000000 0.357143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGSCCW MEME-5 regular expression -------------------------------------------------------------------------------- GCTG[CG][CA]C[AT] -------------------------------------------------------------------------------- Time 32.48 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8080811-8080931 5.35e-03 47_[+5(2.68e-05)]_65 chr3L:14172657-14172777 2.53e-02 14_[+1(6.73e-05)]_98 chr3L:7811034-7811154 6.58e-01 120 chr2L:7150912-7151032 9.78e-01 120 chr3R:23969580-23969700 8.13e-01 120 chr2L:16869160-16869280 9.83e-01 120 chrX:14634850-14634970 5.44e-01 120 chr2R:18850657-18850777 1.10e-01 120 chr3R:12562161-12562281 9.39e-01 120 chr2R:5128312-5128432 6.11e-02 120 chr3L:3983509-3983629 5.55e-02 120 chr3L:10893587-10893707 9.09e-01 120 chrX:18004309-18004429 9.20e-01 120 chr2R:16847108-16847228 1.99e-01 120 chr3R:8867832-8867952 6.12e-01 120 chrX:12744381-12744501 2.77e-01 120 chr3L:19073943-19074063 1.00e+00 120 chr3L:11785452-11785572 3.89e-01 120 chr2R:20257469-20257589 1.00e+00 120 chr3L:2845321-2845441 9.44e-01 120 chr3L:4000845-4000965 7.73e-01 120 chr3L:6157729-6157849 7.15e-01 120 chrX:9350429-9350549 9.95e-01 120 chr3R:18508382-18508502 5.59e-06 4_[+2(2.42e-07)]_21_[+5(9.47e-06)]_\ 79 chrX:7706633-7706753 3.01e-01 120 chrX:3019741-3019861 1.41e-01 120 chr2R:19860369-19860489 4.07e-01 120 chr2R:20572598-20572718 1.13e-01 120 chr3L:10827437-10827557 2.46e-01 120 chrX:9899877-9899997 9.90e-01 120 chr2R:23385700-23385820 2.83e-01 120 chr3R:27426884-27427004 3.14e-01 120 chr2R:12951510-12951630 2.02e-01 120 chr3L:6752884-6753004 8.87e-01 120 chr3R:24206882-24207002 1.31e-02 31_[+4(1.03e-05)]_81 chr2R:22789404-22789524 5.80e-01 120 chr3L:18782121-18782241 9.98e-01 120 chr2R:5122266-5122386 1.98e-02 120 chr3L:13903453-13903573 1.00e+00 120 chr2R:20195218-20195338 8.85e-01 120 chr2R:9903452-9903572 4.40e-03 31_[+3(1.25e-05)]_81 chr3R:24906166-24906286 1.00e+00 120 chrX:12937899-12938019 9.85e-01 120 chr3L:9371120-9371240 9.43e-01 120 chr2L:3100991-3101111 8.42e-04 89_[+2(3.18e-05)]_23 chrX:3455538-3455658 9.63e-01 120 chr3R:24798679-24798799 9.56e-01 120 chr2R:16202913-16203033 6.04e-03 120 chr2R:11756124-11756244 9.99e-01 120 chr3L:3786953-3787073 8.39e-01 120 chrX:20631313-20631433 2.46e-03 5_[+4(1.89e-06)]_107 chr3R:13549638-13549758 3.11e-01 120 chrX:21322716-21322836 7.95e-01 120 chr3L:9424624-9424744 6.04e-01 120 chrX:15121915-15122035 9.99e-01 120 chr2R:7241703-7241823 2.38e-01 120 chrX:6542471-6542591 7.84e-01 120 chr3R:11663698-11663818 4.69e-01 120 chr3R:16769529-16769649 7.03e-02 120 chr3L:18102202-18102322 6.96e-01 120 chr3L:18227459-18227579 1.97e-01 120 chr2L:14537578-14537698 8.15e-01 120 chr3R:28677010-28677130 3.78e-01 120 chr3R:21134140-21134260 3.83e-02 120 chr3R:30235341-30235461 9.35e-01 120 chr2L:2374025-2374145 4.35e-01 120 chr2L:6595160-6595280 9.60e-01 120 chrX:12225398-12225518 9.90e-01 120 chr3L:815420-815540 4.20e-01 120 chr3L:7510830-7510950 6.40e-01 120 chr3R:6468121-6468241 6.96e-01 120 chrX:12547794-12547914 5.39e-03 34_[+5(8.30e-05)]_37_[+5(2.49e-05)]_\ 33 chr3L:8951143-8951263 8.67e-01 120 chr2R:12547708-12547828 9.33e-01 120 chr3R:12985875-12985995 5.20e-01 120 chr3R:12630454-12630574 9.98e-01 120 chr3R:14095581-14095701 9.91e-01 120 chr2L:5519999-5520119 8.06e-01 120 chr2R:18994177-18994297 8.05e-01 120 chr3R:23817713-23817833 5.51e-01 120 chr2L:7395946-7396066 9.94e-01 120 chrX:11379282-11379402 3.87e-01 120 chr2L:7871927-7872047 5.47e-01 120 chr2L:7492032-7492152 4.83e-01 120 chr2L:3805329-3805449 1.00e+00 120 chr3R:8955063-8955183 3.38e-01 120 chr2R:10122606-10122726 2.94e-01 120 chr3L:10767308-10767428 7.99e-01 120 chr2R:18273471-18273591 1.73e-01 120 chr3R:15139629-15139749 6.04e-02 120 chr3L:16482279-16482399 2.18e-01 120 chrX:17782133-17782253 3.41e-01 120 chrX:5970529-5970649 7.06e-02 120 chr3R:11661851-11661971 3.30e-01 120 chrX:16930469-16930589 1.69e-05 [+1(1.89e-06)]_112 chr3R:29581621-29581741 4.71e-01 120 chr2R:13008296-13008416 4.11e-01 120 chr3L:13356169-13356289 2.85e-02 120 chrX:17293512-17293632 9.19e-01 120 chr2L:10760721-10760841 9.20e-01 120 chr3L:6189166-6189286 1.01e-02 17_[+5(7.61e-06)]_95 chr3R:15351104-15351224 6.26e-04 90_[+5(5.13e-06)]_22 chrX:11885504-11885624 3.11e-01 120 chr2R:15155027-15155147 8.51e-02 62_[+4(1.03e-05)]_50 chr3L:8629086-8629206 9.99e-01 120 chr2L:15908613-15908733 6.67e-01 120 chrX:16854878-16854998 6.00e-01 120 chrX:14234130-14234250 8.21e-01 120 chrX:13274614-13274734 1.00e+00 120 chr2R:17533795-17533915 1.70e-01 120 chrX:16580091-16580211 2.80e-04 50_[+5(3.11e-05)]_62 chrX:16944106-16944226 9.84e-01 120 chr3R:25168380-25168500 5.13e-01 120 chr3R:11852097-11852217 8.63e-01 120 chrX:8125352-8125472 9.84e-01 120 chr2L:17588860-17588980 3.03e-01 120 chr2R:10681389-10681509 1.66e-01 120 chr2R:14357280-14357400 1.64e-05 89_[+1(1.56e-07)]_23 chr3R:22878544-22878664 2.82e-01 120 chrX:8445032-8445152 9.99e-01 120 chr3L:11074606-11074726 9.63e-01 120 chr3R:10520675-10520795 7.71e-01 120 chr2L:8602753-8602873 1.00e+00 120 chr2L:17747240-17747360 9.22e-01 120 chr2R:20552075-20552195 3.88e-03 53_[+5(2.49e-05)]_59 chr2L:8746399-8746519 4.71e-01 120 chr3R:26888463-26888583 1.54e-01 120 chr3R:8673951-8674071 2.81e-02 120 chr2R:10123679-10123799 3.67e-03 96_[+4(1.89e-06)]_16 chr3R:15250653-15250773 5.06e-01 120 chr3R:22121386-22121506 5.60e-01 120 chr3R:5413060-5413180 1.08e-01 64_[+1(5.80e-05)]_48 chr3R:12406347-12406467 8.01e-01 120 chrX:9135196-9135316 3.03e-01 120 chr3R:14729351-14729471 1.74e-01 120 chr2R:24943223-24943343 2.57e-02 72_[+5(1.64e-05)]_40 chr3L:3437336-3437456 6.56e-04 93_[+4(1.55e-05)]_19 chr3R:24010961-24011081 8.23e-01 120 chr3R:14657144-14657264 7.69e-01 120 chrX:10573650-10573770 9.27e-01 120 chr3L:12270056-12270176 1.21e-01 120 chr2L:10428666-10428786 9.21e-03 120 chr3R:26012952-26013072 4.08e-01 120 chr2R:12727633-12727753 4.71e-01 120 chr3L:18748370-18748490 9.28e-01 120 chr3L:22471735-22471855 5.48e-02 120 chr2L:9235635-9235755 4.71e-01 120 chr2R:11640972-11641092 2.90e-01 120 chr3L:3380596-3380716 1.87e-02 120 chr2L:7494387-7494507 8.87e-01 120 chrX:9193736-9193856 2.02e-01 120 chr2L:9206524-9206644 8.28e-01 120 chr2R:15478010-15478130 5.45e-03 52_[+3(2.55e-05)]_60 chrX:5285977-5286097 8.48e-01 120 chrX:11108273-11108393 8.55e-02 120 chr3R:25184166-25184286 8.42e-01 120 chr3L:18250857-18250977 9.25e-01 120 chr2R:14576075-14576195 8.09e-01 120 chrX:14743925-14744045 8.58e-01 120 chr3R:16496354-16496474 5.82e-01 120 chr3L:13905661-13905781 8.39e-01 120 chr2L:5326942-5327062 1.98e-03 67_[+5(2.59e-06)]_45 chr2R:11275828-11275948 3.69e-01 120 chr3L:16131677-16131797 1.54e-02 2_[+1(8.70e-05)]_110 chr2R:8002292-8002412 8.89e-01 120 chr3L:16582830-16582950 9.90e-01 120 chrX:15297087-15297207 9.28e-01 120 chrX:7617069-7617189 1.55e-02 120 chr2L:8982732-8982852 8.93e-01 120 chrX:1880351-1880471 2.47e-02 120 chr3L:2411678-2411798 6.67e-01 120 chr2L:10858263-10858383 2.45e-03 120 chr2R:13923505-13923625 1.00e+00 120 chr3R:16837935-16838055 9.77e-01 120 chr3L:15592743-15592863 6.26e-01 120 chr2R:9681971-9682091 4.24e-01 120 chr2R:17813677-17813797 3.36e-01 120 chr3L:6981918-6982038 7.83e-03 20_[+3(4.46e-06)]_92 chr2R:21709665-21709785 2.00e-01 120 chr2L:16703884-16704004 6.78e-01 120 chrX:17330400-17330520 1.94e-01 120 chr2R:8064410-8064530 2.43e-01 120 chr2L:6874662-6874782 7.66e-01 120 chr3R:26014345-26014465 1.74e-01 120 chr2R:8045116-8045236 1.56e-01 34_[+5(7.06e-05)]_78 chr3L:18782320-18782440 8.35e-02 120 chr2L:15061459-15061579 3.77e-01 120 chr3R:19031309-19031429 9.91e-01 120 chr2L:18305163-18305283 9.97e-01 120 chrX:15384107-15384227 9.85e-01 120 chr3L:9066201-9066321 8.02e-01 120 chrX:9652149-9652269 4.05e-02 120 chr3R:17584199-17584319 2.35e-02 20_[+3(4.65e-05)]_92 chr3R:9370568-9370688 5.46e-02 120 chr3L:20516987-20517107 5.26e-01 120 chr2R:22531109-22531229 1.31e-01 120 chr3R:13831932-13832052 6.63e-05 106_[+1(4.59e-07)]_6 chr2R:18834837-18834957 4.55e-01 120 chr3R:18311406-18311526 9.98e-01 120 chr3R:16771732-16771852 3.92e-03 39_[+1(1.89e-06)]_73 chr3R:12722662-12722782 9.99e-01 120 chr3R:21839701-21839821 5.52e-03 29_[+2(7.15e-07)]_83 chr2L:5238317-5238437 9.92e-01 120 chr3R:19848070-19848190 4.17e-04 33_[+3(1.05e-06)]_79 chr3R:5470712-5470832 9.99e-01 120 chr3R:18393590-18393710 6.22e-01 120 chr3R:10048166-10048286 6.77e-01 120 chr2L:6473149-6473269 9.98e-01 120 chrX:13258784-13258904 1.85e-01 120 chr3L:3855344-3855464 4.71e-01 120 chr2L:16709743-16709863 6.56e-01 120 chrX:2061280-2061400 2.38e-06 6_[+4(1.89e-06)]_48_[+5(1.64e-05)]_\ 50 chr2R:15381220-15381340 3.91e-01 120 chr3L:18822504-18822624 2.70e-06 72_[+2(7.15e-07)]_30_[+3(2.09e-05)]_\ 2 chr3L:18786834-18786954 9.97e-01 120 chr2L:6339728-6339848 2.10e-01 120 chr3R:8960440-8960560 2.53e-01 120 chr2R:17062639-17062759 1.59e-07 39_[+5(6.62e-07)]_13_[+1(1.22e-06)]_\ 52 chr3L:361333-361453 4.53e-01 120 chrX:13756998-13757118 5.14e-01 120 chr2L:16547796-16547916 7.59e-01 120 chr3L:12644472-12644592 5.67e-03 44_[+4(5.04e-06)]_68 chr3L:13197665-13197785 8.84e-02 120 chr2L:10468566-10468686 2.24e-01 120 chr2L:20416855-20416975 9.88e-01 120 chr3L:8751385-8751505 4.40e-01 120 chrX:6657079-6657199 2.47e-01 120 chr2R:18398329-18398449 8.73e-02 120 chr3L:15921277-15921397 2.40e-01 120 chr3R:22862135-22862255 1.66e-03 57_[+5(5.41e-05)]_55 chr3L:11398805-11398925 8.55e-01 120 chr3L:14545562-14545682 4.43e-04 35_[+4(3.74e-06)]_77 chr2L:3003539-3003659 7.88e-01 120 chr2L:6830440-6830560 8.11e-01 120 chr3R:15837160-15837280 9.80e-01 120 chr2R:11738632-11738752 1.97e-03 2_[+5(2.49e-05)]_110 chr2R:12468422-12468542 4.28e-01 120 chr3L:16087581-16087701 5.09e-01 120 chr3R:24830044-24830164 8.02e-04 72_[+3(4.28e-07)]_40 chr2R:9286626-9286746 4.45e-01 120 chr2L:20093958-20094078 7.92e-01 120 chr3L:10843460-10843580 8.81e-01 120 chr2L:10856652-10856772 4.21e-01 120 chr3L:6816362-6816482 9.40e-02 120 chr3L:8063558-8063678 1.83e-01 120 chr2L:20097268-20097388 2.44e-04 94_[+5(6.62e-07)]_18 chr3L:6706032-6706152 8.51e-01 120 chr3R:16834800-16834920 9.48e-04 36_[+4(1.93e-05)]_76 chr2L:13366249-13366369 9.25e-01 120 chr3R:18670579-18670699 9.93e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************