******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG13296.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:20494912-20495032 1.0000 120 chr3R:11201515-11201635 1.0000 120 chr3R:15402775-15402895 1.0000 120 chr2R:7896317-7896437 1.0000 120 chr3L:17539044-17539164 1.0000 120 chr3R:11665984-11666104 1.0000 120 chr3R:10131127-10131247 1.0000 120 chrX:9987780-9987900 1.0000 120 chr3R:12716385-12716505 1.0000 120 chr3R:11243170-11243290 1.0000 120 chr2L:9509804-9509924 1.0000 120 chr3R:10186203-10186323 1.0000 120 chr3L:4461828-4461948 1.0000 120 chr2L:7778430-7778550 1.0000 120 chr3R:19613058-19613178 1.0000 120 chr3R:20317732-20317852 1.0000 120 chr3R:5696521-5696641 1.0000 120 chr2L:13158061-13158181 1.0000 120 chr3L:16885213-16885333 1.0000 120 chrX:6799766-6799886 1.0000 120 chr3L:329316-329436 1.0000 120 chrX:18082840-18082960 1.0000 120 chr2L:4829177-4829297 1.0000 120 chr3L:4852810-4852930 1.0000 120 chr2R:7014463-7014583 1.0000 120 chr2R:15515770-15515890 1.0000 120 chr3R:23284399-23284519 1.0000 120 chrX:15640097-15640217 1.0000 120 chrX:16890724-16890844 1.0000 120 chr3R:21271374-21271494 1.0000 120 chrX:6439643-6439763 1.0000 120 chr3R:18903003-18903123 1.0000 120 chr3L:14992955-14993075 1.0000 120 chr2L:8948162-8948282 1.0000 120 chr3L:15814183-15814303 1.0000 120 chr3R:25152453-25152573 1.0000 120 chr3L:15632834-15632954 1.0000 120 chr3R:13802329-13802449 1.0000 120 chr2R:14217648-14217768 1.0000 120 chr3R:25855770-25855890 1.0000 120 chr2R:22390368-22390488 1.0000 120 chr3R:15149817-15149937 1.0000 120 chr3R:9448500-9448620 1.0000 120 chr3R:26185420-26185540 1.0000 120 chr3L:917359-917479 1.0000 120 chr3L:960722-960842 1.0000 120 chr2L:3323552-3323672 1.0000 120 chrX:9431589-9431709 1.0000 120 chrX:11441079-11441199 1.0000 120 chr3R:7591338-7591458 1.0000 120 chr3L:12045605-12045725 1.0000 120 chr3L:17531537-17531657 1.0000 120 chr2L:125474-125594 1.0000 120 chr2R:16581731-16581851 1.0000 120 chrX:16420172-16420292 1.0000 120 chr2L:20831207-20831327 1.0000 120 chr3R:15231890-15232010 1.0000 120 chr2L:1931780-1931900 1.0000 120 chrX:18004359-18004479 1.0000 120 chr2R:15846342-15846462 1.0000 120 chr2L:13839190-13839310 1.0000 120 chr2R:15529374-15529494 1.0000 120 chr2L:1637994-1638114 1.0000 120 chr3L:2254455-2254575 1.0000 120 chr4:1199355-1199475 1.0000 120 chr2R:10079886-10080006 1.0000 120 chr2L:7215817-7215937 1.0000 120 chr2R:17714544-17714664 1.0000 120 chr3L:15689721-15689841 1.0000 120 chr3L:11065964-11066084 1.0000 120 chr3R:24798773-24798893 1.0000 120 chr3L:18020982-18021102 1.0000 120 chr2L:10211346-10211466 1.0000 120 chr2L:413085-413205 1.0000 120 chr2R:7628733-7628853 1.0000 120 chr3L:13903421-13903541 1.0000 120 chr3R:23139124-23139244 1.0000 120 chr3L:20449821-20449941 1.0000 120 chr3L:17615985-17616105 1.0000 120 chrX:11885460-11885580 1.0000 120 chr3R:24102527-24102647 1.0000 120 chr3R:7524291-7524411 1.0000 120 chr3L:20406378-20406498 1.0000 120 chr2L:10397016-10397136 1.0000 120 chr3R:19873326-19873446 1.0000 120 chr3L:3078949-3079069 1.0000 120 chr2L:7217078-7217198 1.0000 120 chr3R:14479760-14479880 1.0000 120 chr3L:8093753-8093873 1.0000 120 chr3R:26987616-26987736 1.0000 120 chr3R:25275469-25275589 1.0000 120 chr3L:16840635-16840755 1.0000 120 chrX:6638238-6638358 1.0000 120 chr2R:12951457-12951577 1.0000 120 chr3L:21859841-21859961 1.0000 120 chr2L:4463455-4463575 1.0000 120 chr3L:11049571-11049691 1.0000 120 chr3L:1742119-1742239 1.0000 120 chr3R:17007469-17007589 1.0000 120 chr3L:16975016-16975136 1.0000 120 chr3L:3306648-3306768 1.0000 120 chrX:5664336-5664456 1.0000 120 chr3R:28959252-28959372 1.0000 120 chr2L:17558266-17558386 1.0000 120 chr2R:20252200-20252320 1.0000 120 chr3R:30200101-30200221 1.0000 120 chr2L:16819826-16819946 1.0000 120 chrX:17694929-17695049 1.0000 120 chr2L:14399416-14399536 1.0000 120 chr2R:7011459-7011579 1.0000 120 chr3L:6157763-6157883 1.0000 120 chrX:6698377-6698497 1.0000 120 chr2L:5113620-5113740 1.0000 120 chr3R:30198946-30199066 1.0000 120 chr2L:5151537-5151657 1.0000 120 chr2L:85227-85347 1.0000 120 chr3L:11785457-11785577 1.0000 120 chr2R:23611341-23611461 1.0000 120 chr2R:15247389-15247509 1.0000 120 chr2R:24028420-24028540 1.0000 120 chr3L:1169737-1169857 1.0000 120 chrX:515808-515928 1.0000 120 chr3R:7217306-7217426 1.0000 120 chr3L:16494904-16495024 1.0000 120 chrX:13208129-13208249 1.0000 120 chr2R:19138067-19138187 1.0000 120 chr3R:9430543-9430663 1.0000 120 chr2L:19576781-19576901 1.0000 120 chr2L:5095577-5095697 1.0000 120 chr3L:18997188-18997308 1.0000 120 chr3L:10827471-10827591 1.0000 120 chr2L:22144291-22144411 1.0000 120 chr2R:21082683-21082803 1.0000 120 chr2L:7254900-7255020 1.0000 120 chr3L:17625128-17625248 1.0000 120 chr3R:22108459-22108579 1.0000 120 chr2R:16225503-16225623 1.0000 120 chr3R:5746762-5746882 1.0000 120 chrX:10462086-10462206 1.0000 120 chr3L:8077312-8077432 1.0000 120 chr2R:22247794-22247914 1.0000 120 chr2L:6465652-6465772 1.0000 120 chr3R:29620981-29621101 1.0000 120 chr2R:19461661-19461781 1.0000 120 chr3L:13912909-13913029 1.0000 120 chr2R:22586769-22586889 1.0000 120 chrX:3968543-3968663 1.0000 120 chr3L:19847113-19847233 1.0000 120 chr2L:14141354-14141474 1.0000 120 chr3L:12270014-12270134 1.0000 120 chr2L:20390148-20390268 1.0000 120 chr2R:12035090-12035210 1.0000 120 chr2R:17085651-17085771 1.0000 120 chr2R:7745232-7745352 1.0000 120 chr2L:18944875-18944995 1.0000 120 chr2R:15480291-15480411 1.0000 120 chr3R:11688318-11688438 1.0000 120 chr3L:15591305-15591425 1.0000 120 chr3R:14657178-14657298 1.0000 120 chr3L:17616903-17617023 1.0000 120 chr2R:14574208-14574328 1.0000 120 chr2L:15909984-15910104 1.0000 120 chr3L:10679956-10680076 1.0000 120 chr2R:13909053-13909173 1.0000 120 chr3L:11107586-11107706 1.0000 120 chr3R:9939601-9939721 1.0000 120 chr2L:10249776-10249896 1.0000 120 chr2R:12644270-12644390 1.0000 120 chr3L:17644243-17644363 1.0000 120 chr3R:16011776-16011896 1.0000 120 chr3L:14549346-14549466 1.0000 120 chr2L:20077903-20078023 1.0000 120 chr3L:8997713-8997833 1.0000 120 chr3R:21207007-21207127 1.0000 120 chr3L:21412277-21412397 1.0000 120 chr2L:5096954-5097074 1.0000 120 chr2R:15155196-15155316 1.0000 120 chr2L:18966972-18967092 1.0000 120 chr3R:27919516-27919636 1.0000 120 chr2R:13937244-13937364 1.0000 120 chr2L:3228822-3228942 1.0000 120 chr2L:3323751-3323871 1.0000 120 chr3L:1737997-1738117 1.0000 120 chr3R:5413167-5413287 1.0000 120 chr3L:18895110-18895230 1.0000 120 chr3L:11528458-11528578 1.0000 120 chr2R:21312503-21312623 1.0000 120 chr2R:7070886-7071006 1.0000 120 chr2R:18172020-18172140 1.0000 120 chr2R:11190881-11191001 1.0000 120 chr3R:17526200-17526320 1.0000 120 chrX:16573807-16573927 1.0000 120 chr3R:19223570-19223690 1.0000 120 chr2R:21549085-21549205 1.0000 120 chr2R:6023240-6023360 1.0000 120 chr2L:7940792-7940912 1.0000 120 chr2L:12463157-12463277 1.0000 120 chr2L:937061-937181 1.0000 120 chr2R:6811055-6811175 1.0000 120 chr3L:8689816-8689936 1.0000 120 chr2L:868352-868472 1.0000 120 chr2R:22661310-22661430 1.0000 120 chr3R:20833134-20833254 1.0000 120 chr2L:2872705-2872825 1.0000 120 chr3L:2845290-2845410 1.0000 120 chr3L:14622575-14622695 1.0000 120 chr3L:9360379-9360499 1.0000 120 chr2R:10122612-10122732 1.0000 120 chr3R:23725971-23726091 1.0000 120 chr3L:21321979-21322099 1.0000 120 chr2L:21218865-21218985 1.0000 120 chr3L:10734637-10734757 1.0000 120 chr3L:3320185-3320305 1.0000 120 chr2L:20840570-20840690 1.0000 120 chr3L:12889377-12889497 1.0000 120 chrX:12547721-12547841 1.0000 120 chr3L:3411787-3411907 1.0000 120 chrX:3399393-3399513 1.0000 120 chr3R:26333440-26333560 1.0000 120 chr3L:14706723-14706843 1.0000 120 chr2L:2729994-2730114 1.0000 120 chr2L:11736123-11736243 1.0000 120 chr3L:7782359-7782479 1.0000 120 chr2R:18539984-18540104 1.0000 120 chr2R:6464943-6465063 1.0000 120 chr2R:6668889-6669009 1.0000 120 chr3L:19132754-19132874 1.0000 120 chr3R:11663640-11663760 1.0000 120 chr2R:13586391-13586511 1.0000 120 chr3L:17003603-17003723 1.0000 120 chr3R:14709010-14709130 1.0000 120 chr2R:10123718-10123838 1.0000 120 chr2R:10025855-10025975 1.0000 120 chr2L:8938121-8938241 1.0000 120 chr2R:17604622-17604742 1.0000 120 chrX:947663-947783 1.0000 120 chr2R:16610088-16610208 1.0000 120 chr2R:23964747-23964867 1.0000 120 chr3L:4025867-4025987 1.0000 120 chr3R:14875736-14875856 1.0000 120 chr2R:13261830-13261950 1.0000 120 chr3L:14031224-14031344 1.0000 120 chr3L:15034395-15034515 1.0000 120 chr3R:29089777-29089897 1.0000 120 chrX:17293515-17293635 1.0000 120 chr2L:2168335-2168455 1.0000 120 chr3L:629570-629690 1.0000 120 chr2R:22669220-22669340 1.0000 120 chr3L:14804720-14804840 1.0000 120 chr3R:9701424-9701544 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG13296/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG13296.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.319 C 0.185 G 0.183 T 0.312 Background letter frequencies (from file dataset with add-one prior applied): A 0.319 C 0.185 G 0.183 T 0.312 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCTGGSCR MEME-1 width = 8 sites = 32 llr = 288 E-value = 2.5e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGGSCR MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::2 pos.-specific C :a13:582 probability G a:27a534 matrix T ::7::::2 bits 2.4 ** * 2.2 ** * 2.0 ** * 1.7 ** * * Relative 1.5 ** **** Entropy 1.2 ** **** (13.0 bits) 1.0 ** **** 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel GCTGGCCG consensus C GGA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGSCR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:18539984-18540104 83 2.22e-06 GCCCCGAGCG GCTGGCCG TGCAAACTGT chr2R:14217648-14217768 90 2.22e-06 AAGATGTTTG GCTGGCCG TTGGCGCTGA chr3R:19223570-19223690 29 4.41e-06 TTGATTGCTG GCTGGGCG AGCGGGGAGG chr2R:21549085-21549205 32 5.71e-06 GCGAATAAAA GCGGGCCG TCGATACCAA chr3R:7524291-7524411 71 5.71e-06 GGAAAAAGAG GCGGGCCG CCCACCGAGG chr2R:16610088-16610208 25 9.23e-06 TTTGTTTTAT GCTGGCCC ATTTCCGGTC chr2L:3323751-3323871 46 9.23e-06 GGACGACCAA GCTGGCCC AAAATGTTAA chr2L:7217078-7217198 80 1.37e-05 ATTCAACTTT GCTCGCCG GCAACAGTTT chr2L:2729994-2730114 11 1.81e-05 AGTGGGCCCT GCTCGGCG CGATACAGTG chr2R:15480291-15480411 84 1.81e-05 GATAAATAAC GCTCGGCG GCTTGTTGTG chr3L:17003603-17003723 56 2.16e-05 TGTGGGCAGG GCTGGGGG GTAGCGGGGG chr2L:15909984-15910104 34 2.16e-05 GGCTTTTCTA GCCGGCCG CCGTTTGTTG chr3R:15231890-15232010 103 2.16e-05 CCTAAGACTT GCTGGGGG CCAATAATTT chr3L:17531537-17531657 5 2.16e-05 TGGT GCTGGGGG ATTTGGTCGC chr3R:23284399-23284519 104 2.67e-05 TAACGAGAGT GCTGGCCA AATATTTAC chr3L:8093753-8093873 25 3.06e-05 CGTTCTGGCT GCTGGGCA AACAAAATCG chr2L:868352-868472 15 3.43e-05 TGGCTCATTC GCTGGCCT TTTGAGTTGT chr3R:11665984-11666104 76 3.43e-05 ACAACCCACC GCTGGCCT CCAGTGACAA chr2L:1931780-1931900 55 3.94e-05 ATCGTATAAG GCTGGGCT CATATGTAAA chr2L:18944875-18944995 109 4.20e-05 TGCGGGTGGA GCGGGGCC ACGA chrX:6698377-6698497 42 4.20e-05 TTCTTTTCCC GCGCGCCG GGAATTAACA chr3L:1169737-1169857 28 4.68e-05 TGTATTATTT GCGCGGCG ATAAGATCTA chr2L:4829177-4829297 11 5.26e-05 ACTGGCCTCA GCTGGCGC AGACACTGCG chr2L:20840570-20840690 29 6.06e-05 CTCGTTGAAC GCGGGCCA CTCTTTCAAT chr2R:20252200-20252320 30 8.53e-05 TATAAAATCA GCTCGGCA ATTTATGATG chr2R:7070886-7071006 89 9.36e-05 GGGTTCTTGT GCTGGGGA TATCCGATGT chr3L:2254455-2254575 8 9.36e-05 CCCTTTC GCCGGCCA CTCACCAGGC chr3L:15632834-15632954 55 9.36e-05 CTGTTTTGCT GCTGGGGA ATTTATCTTA chrX:16890724-16890844 69 1.09e-04 GGTGGTGTTT GCTCGGCT TCAATGGCGC chr3L:8997713-8997833 17 1.25e-04 TTTCACCTTT GCTCGCGC GCGCGTTTGT chr3R:5696521-5696641 52 1.43e-04 GCGGAAATGC GCCGGGGC CGGAAATGGA chr2R:23964747-23964867 30 1.81e-04 GGCCACACTC GCCCGCCT CCTCGCAATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGSCR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:18539984-18540104 2.2e-06 82_[+1]_30 chr2R:14217648-14217768 2.2e-06 89_[+1]_23 chr3R:19223570-19223690 4.4e-06 28_[+1]_84 chr2R:21549085-21549205 5.7e-06 31_[+1]_81 chr3R:7524291-7524411 5.7e-06 70_[+1]_42 chr2R:16610088-16610208 9.2e-06 24_[+1]_88 chr2L:3323751-3323871 9.2e-06 45_[+1]_67 chr2L:7217078-7217198 1.4e-05 79_[+1]_33 chr2L:2729994-2730114 1.8e-05 10_[+1]_102 chr2R:15480291-15480411 1.8e-05 83_[+1]_29 chr3L:17003603-17003723 2.2e-05 55_[+1]_57 chr2L:15909984-15910104 2.2e-05 33_[+1]_79 chr3R:15231890-15232010 2.2e-05 102_[+1]_10 chr3L:17531537-17531657 2.2e-05 4_[+1]_108 chr3R:23284399-23284519 2.7e-05 103_[+1]_9 chr3L:8093753-8093873 3.1e-05 24_[+1]_88 chr2L:868352-868472 3.4e-05 14_[+1]_98 chr3R:11665984-11666104 3.4e-05 75_[+1]_37 chr2L:1931780-1931900 3.9e-05 54_[+1]_58 chr2L:18944875-18944995 4.2e-05 108_[+1]_4 chrX:6698377-6698497 4.2e-05 41_[+1]_71 chr3L:1169737-1169857 4.7e-05 27_[+1]_85 chr2L:4829177-4829297 5.3e-05 10_[+1]_102 chr2L:20840570-20840690 6.1e-05 28_[+1]_84 chr2R:20252200-20252320 8.5e-05 29_[+1]_83 chr2R:7070886-7071006 9.4e-05 88_[+1]_24 chr3L:2254455-2254575 9.4e-05 7_[+1]_105 chr3L:15632834-15632954 9.4e-05 54_[+1]_58 chrX:16890724-16890844 0.00011 68_[+1]_44 chr3L:8997713-8997833 0.00013 16_[+1]_96 chr3R:5696521-5696641 0.00014 51_[+1]_61 chr2R:23964747-23964867 0.00018 29_[+1]_83 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGSCR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGGSCR width=8 seqs=32 chr2R:18539984-18540104 ( 83) GCTGGCCG 1 chr2R:14217648-14217768 ( 90) GCTGGCCG 1 chr3R:19223570-19223690 ( 29) GCTGGGCG 1 chr2R:21549085-21549205 ( 32) GCGGGCCG 1 chr3R:7524291-7524411 ( 71) GCGGGCCG 1 chr2R:16610088-16610208 ( 25) GCTGGCCC 1 chr2L:3323751-3323871 ( 46) GCTGGCCC 1 chr2L:7217078-7217198 ( 80) GCTCGCCG 1 chr2L:2729994-2730114 ( 11) GCTCGGCG 1 chr2R:15480291-15480411 ( 84) GCTCGGCG 1 chr3L:17003603-17003723 ( 56) GCTGGGGG 1 chr2L:15909984-15910104 ( 34) GCCGGCCG 1 chr3R:15231890-15232010 ( 103) GCTGGGGG 1 chr3L:17531537-17531657 ( 5) GCTGGGGG 1 chr3R:23284399-23284519 ( 104) GCTGGCCA 1 chr3L:8093753-8093873 ( 25) GCTGGGCA 1 chr2L:868352-868472 ( 15) GCTGGCCT 1 chr3R:11665984-11666104 ( 76) GCTGGCCT 1 chr2L:1931780-1931900 ( 55) GCTGGGCT 1 chr2L:18944875-18944995 ( 109) GCGGGGCC 1 chrX:6698377-6698497 ( 42) GCGCGCCG 1 chr3L:1169737-1169857 ( 28) GCGCGGCG 1 chr2L:4829177-4829297 ( 11) GCTGGCGC 1 chr2L:20840570-20840690 ( 29) GCGGGCCA 1 chr2R:20252200-20252320 ( 30) GCTCGGCA 1 chr2R:7070886-7071006 ( 89) GCTGGGGA 1 chr3L:2254455-2254575 ( 8) GCCGGCCA 1 chr3L:15632834-15632954 ( 55) GCTGGGGA 1 chrX:16890724-16890844 ( 69) GCTCGGCT 1 chr3L:8997713-8997833 ( 17) GCTCGCGC 1 chr3R:5696521-5696641 ( 52) GCCGGGGC 1 chr2R:23964747-23964867 ( 30) GCCCGCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGSCR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 2.5e-003 -1164 -1164 245 -1164 -1164 243 -1164 -1164 -1164 -57 3 114 -1164 60 197 -1164 -1164 -1164 245 -1164 -1164 152 136 -1164 -1164 202 45 -1164 -54 2 126 -100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGSCR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 2.5e-003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.187500 0.687500 0.000000 0.281250 0.718750 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.531250 0.468750 0.000000 0.000000 0.750000 0.250000 0.000000 0.218750 0.187500 0.437500 0.156250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGSCR MEME-1 regular expression -------------------------------------------------------------------------------- GCT[GC]G[CG][CG][GA] -------------------------------------------------------------------------------- Time 7.46 secs. ******************************************************************************** ******************************************************************************** MOTIF RYAAACAA MEME-2 width = 8 sites = 90 llr = 636 E-value = 1.7e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif RYAAACAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 519aa:a8 pos.-specific C :41::8:: probability G 5::::::1 matrix T :5:::2:1 bits 2.4 2.2 2.0 1.7 ** * Relative 1.5 ***** Entropy 1.2 ***** (10.2 bits) 1.0 * ***** 0.7 * ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATAAACAA consensus GC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:4025867-4025987 55 2.07e-05 GTTTATCAGC GCAAACAA AAGCCGTCGA chr3R:23725971-23726091 69 2.07e-05 GTTACCCGAA GCAAACAA AAAAAAAATG chr3L:8689816-8689936 75 2.07e-05 aaacaaataa gcaaacaa acaaacaaGC chr2R:6811055-6811175 50 2.07e-05 CGCGGCGCTT GCAAACAA AATTCATATC chr2R:18172020-18172140 99 2.07e-05 TTTATAGGCG GCAAACAA AGAGCGCAGT chr3R:30198946-30199066 32 2.07e-05 TAATGCCAAA GCAAACAA CCAAAGGCTA chr3L:17615985-17616105 78 2.07e-05 GTTGGCCAAA GCAAACAA GATCACGGAA chr3L:15689721-15689841 72 2.07e-05 AATGTGCGGC GCAAACAA CGATGGCtaa chr2R:15846342-15846462 25 2.07e-05 TGCGGGAAAG GCAAACAA ACAATTCATC chr3R:23284399-23284519 23 2.07e-05 CTTTGGATAT GCAAACAA ACTACTGATA chr3R:11201515-11201635 78 2.07e-05 TAGCAGCTGA GCAAACAA AGAACTAGGG chr2R:10025855-10025975 104 5.56e-05 AATGGCAAAC GTAAACAA GTGCGAACG chr2R:6464943-6465063 78 5.56e-05 cagcataaaa gtaaacaa cagcataaca chr2L:21218865-21218985 62 5.56e-05 CGCGTTGTTA GTAAACAA ACGCAGTGTT chr3R:9939601-9939721 76 5.56e-05 TAAACCGAAA GTAAACAA CTGGCGAGCG chrX:6698377-6698497 94 5.56e-05 AATGTGGCGA GTAAACAA CAAAAGCGAC chr2R:7628733-7628853 12 5.56e-05 GTGCAAAAAA GTAAACAA AACCGAATTC chr2L:1931780-1931900 68 5.56e-05 GGGCTCATAT GTAAACAA ACGGCAACAA chr3R:19613058-19613178 96 5.56e-05 TGTATGCTAG GTAAACAA ATAACTTCTG chr2R:13909053-13909173 56 9.16e-05 ATTAATCAAA ACAAACAA CAGTAATTGT chr2R:14574208-14574328 18 9.16e-05 TGCAAAACGC ACAAACAA CAAATTGTGG chr2L:20390148-20390268 82 9.16e-05 agacaaacaa acaaacaa acCCTCGGCA chr3L:16494904-16495024 42 9.16e-05 TTCGTAGGTG ACaaacaa tgatataaac chr3R:21271374-21271494 97 9.16e-05 TACAGAAGAA ACAAACAA AAGACAAGCT chr2L:7778430-7778550 111 9.16e-05 CTCTCGCTTA ACAAACAA TG chr2R:22669220-22669340 27 1.52e-04 GATAAGTTCG ATAAACAA TGAAGATCAT chr2R:13261830-13261950 102 1.52e-04 TATTTGTATT ATAAACAA CACTTATAAA chr2R:22661310-22661430 58 1.52e-04 CAGCGAAAAA ATAAACAA ATAGATTTTG chr2R:12644270-12644390 8 1.52e-04 CGAGCAA ATAAACAA CAATGGCACT chr2L:85227-85347 21 1.52e-04 TTTTAGGCAG ATAAACAA CGAAACGAAA chr3R:14479760-14479880 68 1.52e-04 TATGTGGAGT ATAAACAA CAAAGGCAGA chr2L:10397016-10397136 95 1.52e-04 GCCATAATTA ATAAACAA TAAATCACAG chr3L:20406378-20406498 22 1.52e-04 TATATGCGCA ATAAACAA TGGTTTGATC chr2R:15529374-15529494 71 1.52e-04 TTGTTTGCCA ATAAACAA GTATATACAA chr3L:15814183-15814303 51 1.52e-04 TGATAAAAGC ATAAACAA AGAGTAAACA chr3R:12716385-12716505 65 1.52e-04 AGTGATCCCC ATAAACAA TTGTTTACTG chr2R:12035090-12035210 43 1.88e-04 GATATAAGCA GAAAACAA ATTTTATACA chr2R:15480291-15480411 29 2.08e-04 AAACCAGTTT GCAAACAT GTACATGGCT chr4:1199355-1199475 64 2.08e-04 ATCTTATCAA GCAAACAT ACAACTTGTG chrX:6799766-6799886 112 2.08e-04 TTTACTATCT GCAAACAT A chr3R:20317732-20317852 69 2.08e-04 TTTTTGCTTG GCAAACAT TGACTATATT chr3L:15034395-15034515 14 3.17e-04 AAAGAAAGTA AAAAACAA GTCCAGTTTA chr3R:14709010-14709130 55 3.17e-04 ATTCATTGTG AAAAACAA TGTTTAATTA chr2L:12463157-12463277 30 3.17e-04 AGTCAACAAC AAAAACAA TGCATATTCT chr2L:20077903-20078023 37 3.17e-04 ATTGTCCGAA AAAAACAA GGAAAAGAAG chr3L:15591305-15591425 66 3.17e-04 CGGCAGCAGA AAAAACAA GCAGTGGATG chr3L:19847113-19847233 56 3.17e-04 TGTCTGCCAT AAAAACAA AGCAAATTTA chr2L:19576781-19576901 73 3.17e-04 AATGTCGGCA AAAAACAA GGCGCAGCTG chr3L:6157763-6157883 35 3.17e-04 AAGAAAACTA AAAAACAA TCCGGCTCTT chr2L:16819826-16819946 9 3.17e-04 CATAAATA AAAAACAA GATATGTGCT chrX:5664336-5664456 18 3.17e-04 GGCCTGGAGC AAAAACAA AAACATTCAA chr3L:11049571-11049691 15 3.17e-04 AAATCCGAAA GCAAACAG GGGAGCACCC chr2R:17714544-17714664 15 3.17e-04 CATATATATG AAAAACAA ATTCAAACGT chrX:15640097-15640217 36 3.17e-04 aGGCAAACAG GCAAATAA GACACACGAA chr3L:2254455-2254575 46 3.51e-04 TAATTCATGC GTAAACAT TTGCGCTTGT chr3L:3411787-3411907 86 3.87e-04 ATTGAAAGAT ACAAACAT TTTAAAGTTC chr3L:2845290-2845410 113 3.87e-04 AGAAACTTCT ACAAACAT chr3R:11688318-11688438 94 3.87e-04 TGAATTACTT ACAAACAT AATATCAACA chr3L:13912909-13913029 2 3.87e-04 t acaaacat atgtacaaac chr3L:960722-960842 16 3.87e-04 CTCCCAAGCT ACAAACAT AAACTTTATG chrX:16573807-16573927 77 4.78e-04 TCGAACCGCC GCCAACAA CAATTGCTGT chr2R:7070886-7071006 46 4.78e-04 GGTCCGCCAT GTAAACAG AAGATACTCA chr2R:21312503-21312623 78 4.78e-04 CAGATTGAGT GTAAATAA AGACAAGCAG chr2L:15909984-15910104 68 4.78e-04 ACAAATTTGC GTAAACAG AGCACTATTT chr2R:19461661-19461781 33 4.78e-04 CGTGGTGTAG GTAAATAA GCTTAACTAG chr2R:24028420-24028540 50 4.78e-04 TAAGACTTGA GTAAATAA AGTCATTGTC chr2L:10211346-10211466 69 4.78e-04 CTGCGAAAGT GTAAATAA TGGACTCCAA chr2L:1637994-1638114 62 4.78e-04 AATCAGTTGC GTAAATAA TGCGTATCGC chr2L:9509804-9509924 35 4.78e-04 CCGAAAGCAA GTAAACAG GGAATGTGAT chr3L:20494912-20495032 34 4.78e-04 TGTCTTATTT GCCAACAA ATATTTATAA chr2L:3228822-3228942 113 5.59e-04 GCAAAGCCAA ACAAACAG chr3R:14657178-14657298 44 5.59e-04 AGCTTATTCC ACAAATAA AATATTAATT chr2R:22586769-22586889 51 5.59e-04 GTCGACTGCA ACAAATAA AAGCAGCGCG chr3R:5746762-5746882 74 5.59e-04 CTACTATTAA ACAAATAA AGATGGCAAC chr3R:25275469-25275589 78 5.59e-04 TTTACCTACA ACAAATAA ATACGAATAC chrX:9987780-9987900 23 5.59e-04 AAAAAATAAT ACAAATAA TCATACCTGG chr3L:11528458-11528578 102 6.19e-04 ACCGAGTTTA ATAAACAT TTATCAGTCG chr3L:15632834-15632954 76 6.19e-04 TATCTTAGCA ATAAACAT ATGCATATAC chr2R:6023240-6023360 95 6.39e-04 CTTTCCTGTT GTCAACAA AGCGAACGAG chr3L:10827471-10827591 102 6.39e-04 AGAAGCATAA GTCAACAA AATCATAATT chr3R:7524291-7524411 91 6.39e-04 CACCGAGGGG GTCAACAA CATTTTGATC chr2L:18966972-18967092 75 7.97e-04 AAATGAATta ataaataa tatataattt chrX:3968543-3968663 81 7.97e-04 TATTTTGGTC ATAAATAA ACACCCAATC chr3L:17625128-17625248 35 7.97e-04 AATGAGCGAG ATAAATAA GGAAAAAGTT chr2L:4463455-4463575 106 7.97e-04 CATCATTTTG ATAAATAA TTTGAAT chr3L:8093753-8093873 96 7.97e-04 TTGTAGCTAC ATAAATAA GCATTCAAAC chr3L:3078949-3079069 2 7.97e-04 A ATAAATAA AAAACGCGAG chr3R:25152453-25152573 74 7.97e-04 AATCAATAAT ATAAATAA CTAATTGAGA chr2L:4829177-4829297 89 7.97e-04 GCTCACTTAG ATAAACAG AGTCGGACGG chr2L:413085-413205 86 8.67e-04 TAACGACTAC GAAAACAT TTACATAGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:4025867-4025987 2.1e-05 54_[+2]_58 chr3R:23725971-23726091 2.1e-05 68_[+2]_44 chr3L:8689816-8689936 2.1e-05 74_[+2]_38 chr2R:6811055-6811175 2.1e-05 49_[+2]_63 chr2R:18172020-18172140 2.1e-05 98_[+2]_14 chr3R:30198946-30199066 2.1e-05 31_[+2]_81 chr3L:17615985-17616105 2.1e-05 77_[+2]_35 chr3L:15689721-15689841 2.1e-05 71_[+2]_41 chr2R:15846342-15846462 2.1e-05 24_[+2]_88 chr3R:23284399-23284519 2.1e-05 22_[+2]_90 chr3R:11201515-11201635 2.1e-05 77_[+2]_35 chr2R:10025855-10025975 5.6e-05 103_[+2]_9 chr2R:6464943-6465063 5.6e-05 77_[+2]_35 chr2L:21218865-21218985 5.6e-05 61_[+2]_51 chr3R:9939601-9939721 5.6e-05 75_[+2]_37 chrX:6698377-6698497 5.6e-05 93_[+2]_19 chr2R:7628733-7628853 5.6e-05 11_[+2]_101 chr2L:1931780-1931900 5.6e-05 67_[+2]_45 chr3R:19613058-19613178 5.6e-05 95_[+2]_17 chr2R:13909053-13909173 9.2e-05 55_[+2]_57 chr2R:14574208-14574328 9.2e-05 17_[+2]_95 chr2L:20390148-20390268 9.2e-05 81_[+2]_31 chr3L:16494904-16495024 9.2e-05 41_[+2]_71 chr3R:21271374-21271494 9.2e-05 96_[+2]_16 chr2L:7778430-7778550 9.2e-05 110_[+2]_2 chr2R:22669220-22669340 0.00015 26_[+2]_86 chr2R:13261830-13261950 0.00015 101_[+2]_11 chr2R:22661310-22661430 0.00015 57_[+2]_55 chr2R:12644270-12644390 0.00015 7_[+2]_105 chr2L:85227-85347 0.00015 20_[+2]_92 chr3R:14479760-14479880 0.00015 67_[+2]_45 chr2L:10397016-10397136 0.00015 94_[+2]_18 chr3L:20406378-20406498 0.00015 21_[+2]_91 chr2R:15529374-15529494 0.00015 70_[+2]_42 chr3L:15814183-15814303 0.00015 50_[+2]_62 chr3R:12716385-12716505 0.00015 64_[+2]_48 chr2R:12035090-12035210 0.00019 42_[+2]_70 chr2R:15480291-15480411 0.00021 28_[+2]_84 chr4:1199355-1199475 0.00021 63_[+2]_49 chrX:6799766-6799886 0.00021 111_[+2]_1 chr3R:20317732-20317852 0.00021 68_[+2]_44 chr3L:15034395-15034515 0.00032 13_[+2]_99 chr3R:14709010-14709130 0.00032 54_[+2]_58 chr2L:12463157-12463277 0.00032 29_[+2]_83 chr2L:20077903-20078023 0.00032 36_[+2]_76 chr3L:15591305-15591425 0.00032 65_[+2]_47 chr3L:19847113-19847233 0.00032 55_[+2]_57 chr2L:19576781-19576901 0.00032 72_[+2]_40 chr3L:6157763-6157883 0.00032 34_[+2]_78 chr2L:16819826-16819946 0.00032 8_[+2]_104 chrX:5664336-5664456 0.00032 17_[+2]_95 chr3L:11049571-11049691 0.00032 14_[+2]_98 chr2R:17714544-17714664 0.00032 14_[+2]_98 chrX:15640097-15640217 0.00032 35_[+2]_77 chr3L:2254455-2254575 0.00035 45_[+2]_67 chr3L:3411787-3411907 0.00039 85_[+2]_27 chr3L:2845290-2845410 0.00039 112_[+2] chr3R:11688318-11688438 0.00039 93_[+2]_19 chr3L:13912909-13913029 0.00039 1_[+2]_111 chr3L:960722-960842 0.00039 15_[+2]_97 chrX:16573807-16573927 0.00048 76_[+2]_36 chr2R:7070886-7071006 0.00048 45_[+2]_67 chr2R:21312503-21312623 0.00048 77_[+2]_35 chr2L:15909984-15910104 0.00048 67_[+2]_45 chr2R:19461661-19461781 0.00048 32_[+2]_80 chr2R:24028420-24028540 0.00048 49_[+2]_63 chr2L:10211346-10211466 0.00048 68_[+2]_44 chr2L:1637994-1638114 0.00048 61_[+2]_51 chr2L:9509804-9509924 0.00048 34_[+2]_78 chr3L:20494912-20495032 0.00048 33_[+2]_79 chr2L:3228822-3228942 0.00056 112_[+2] chr3R:14657178-14657298 0.00056 43_[+2]_69 chr2R:22586769-22586889 0.00056 50_[+2]_62 chr3R:5746762-5746882 0.00056 73_[+2]_39 chr3R:25275469-25275589 0.00056 77_[+2]_35 chrX:9987780-9987900 0.00056 22_[+2]_90 chr3L:11528458-11528578 0.00062 101_[+2]_11 chr3L:15632834-15632954 0.00062 75_[+2]_37 chr2R:6023240-6023360 0.00064 94_[+2]_18 chr3L:10827471-10827591 0.00064 101_[+2]_11 chr3R:7524291-7524411 0.00064 90_[+2]_22 chr2L:18966972-18967092 0.0008 74_[+2]_38 chrX:3968543-3968663 0.0008 80_[+2]_32 chr3L:17625128-17625248 0.0008 34_[+2]_78 chr2L:4463455-4463575 0.0008 105_[+2]_7 chr3L:8093753-8093873 0.0008 95_[+2]_17 chr3L:3078949-3079069 0.0008 1_[+2]_111 chr3R:25152453-25152573 0.0008 73_[+2]_39 chr2L:4829177-4829297 0.0008 88_[+2]_24 chr2L:413085-413205 0.00087 85_[+2]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RYAAACAA width=8 seqs=90 chr3L:4025867-4025987 ( 55) GCAAACAA 1 chr3R:23725971-23726091 ( 69) GCAAACAA 1 chr3L:8689816-8689936 ( 75) GCAAACAA 1 chr2R:6811055-6811175 ( 50) GCAAACAA 1 chr2R:18172020-18172140 ( 99) GCAAACAA 1 chr3R:30198946-30199066 ( 32) GCAAACAA 1 chr3L:17615985-17616105 ( 78) GCAAACAA 1 chr3L:15689721-15689841 ( 72) GCAAACAA 1 chr2R:15846342-15846462 ( 25) GCAAACAA 1 chr3R:23284399-23284519 ( 23) GCAAACAA 1 chr3R:11201515-11201635 ( 78) GCAAACAA 1 chr2R:10025855-10025975 ( 104) GTAAACAA 1 chr2R:6464943-6465063 ( 78) GTAAACAA 1 chr2L:21218865-21218985 ( 62) GTAAACAA 1 chr3R:9939601-9939721 ( 76) GTAAACAA 1 chrX:6698377-6698497 ( 94) GTAAACAA 1 chr2R:7628733-7628853 ( 12) GTAAACAA 1 chr2L:1931780-1931900 ( 68) GTAAACAA 1 chr3R:19613058-19613178 ( 96) GTAAACAA 1 chr2R:13909053-13909173 ( 56) ACAAACAA 1 chr2R:14574208-14574328 ( 18) ACAAACAA 1 chr2L:20390148-20390268 ( 82) ACAAACAA 1 chr3L:16494904-16495024 ( 42) ACAAACAA 1 chr3R:21271374-21271494 ( 97) ACAAACAA 1 chr2L:7778430-7778550 ( 111) ACAAACAA 1 chr2R:22669220-22669340 ( 27) ATAAACAA 1 chr2R:13261830-13261950 ( 102) ATAAACAA 1 chr2R:22661310-22661430 ( 58) ATAAACAA 1 chr2R:12644270-12644390 ( 8) ATAAACAA 1 chr2L:85227-85347 ( 21) ATAAACAA 1 chr3R:14479760-14479880 ( 68) ATAAACAA 1 chr2L:10397016-10397136 ( 95) ATAAACAA 1 chr3L:20406378-20406498 ( 22) ATAAACAA 1 chr2R:15529374-15529494 ( 71) ATAAACAA 1 chr3L:15814183-15814303 ( 51) ATAAACAA 1 chr3R:12716385-12716505 ( 65) ATAAACAA 1 chr2R:12035090-12035210 ( 43) GAAAACAA 1 chr2R:15480291-15480411 ( 29) GCAAACAT 1 chr4:1199355-1199475 ( 64) GCAAACAT 1 chrX:6799766-6799886 ( 112) GCAAACAT 1 chr3R:20317732-20317852 ( 69) GCAAACAT 1 chr3L:15034395-15034515 ( 14) AAAAACAA 1 chr3R:14709010-14709130 ( 55) AAAAACAA 1 chr2L:12463157-12463277 ( 30) AAAAACAA 1 chr2L:20077903-20078023 ( 37) AAAAACAA 1 chr3L:15591305-15591425 ( 66) AAAAACAA 1 chr3L:19847113-19847233 ( 56) AAAAACAA 1 chr2L:19576781-19576901 ( 73) AAAAACAA 1 chr3L:6157763-6157883 ( 35) AAAAACAA 1 chr2L:16819826-16819946 ( 9) AAAAACAA 1 chrX:5664336-5664456 ( 18) AAAAACAA 1 chr3L:11049571-11049691 ( 15) GCAAACAG 1 chr2R:17714544-17714664 ( 15) AAAAACAA 1 chrX:15640097-15640217 ( 36) GCAAATAA 1 chr3L:2254455-2254575 ( 46) GTAAACAT 1 chr3L:3411787-3411907 ( 86) ACAAACAT 1 chr3L:2845290-2845410 ( 113) ACAAACAT 1 chr3R:11688318-11688438 ( 94) ACAAACAT 1 chr3L:13912909-13913029 ( 2) ACAAACAT 1 chr3L:960722-960842 ( 16) ACAAACAT 1 chrX:16573807-16573927 ( 77) GCCAACAA 1 chr2R:7070886-7071006 ( 46) GTAAACAG 1 chr2R:21312503-21312623 ( 78) GTAAATAA 1 chr2L:15909984-15910104 ( 68) GTAAACAG 1 chr2R:19461661-19461781 ( 33) GTAAATAA 1 chr2R:24028420-24028540 ( 50) GTAAATAA 1 chr2L:10211346-10211466 ( 69) GTAAATAA 1 chr2L:1637994-1638114 ( 62) GTAAATAA 1 chr2L:9509804-9509924 ( 35) GTAAACAG 1 chr3L:20494912-20495032 ( 34) GCCAACAA 1 chr2L:3228822-3228942 ( 113) ACAAACAG 1 chr3R:14657178-14657298 ( 44) ACAAATAA 1 chr2R:22586769-22586889 ( 51) ACAAATAA 1 chr3R:5746762-5746882 ( 74) ACAAATAA 1 chr3R:25275469-25275589 ( 78) ACAAATAA 1 chrX:9987780-9987900 ( 23) ACAAATAA 1 chr3L:11528458-11528578 ( 102) ATAAACAT 1 chr3L:15632834-15632954 ( 76) ATAAACAT 1 chr2R:6023240-6023360 ( 95) GTCAACAA 1 chr3L:10827471-10827591 ( 102) GTCAACAA 1 chr3R:7524291-7524411 ( 91) GTCAACAA 1 chr2L:18966972-18967092 ( 75) ATAAATAA 1 chrX:3968543-3968663 ( 81) ATAAATAA 1 chr3L:17625128-17625248 ( 35) ATAAATAA 1 chr2L:4463455-4463575 ( 106) ATAAATAA 1 chr3L:8093753-8093873 ( 96) ATAAATAA 1 chr3L:3078949-3079069 ( 2) ATAAATAA 1 chr3R:25152453-25152573 ( 74) ATAAATAA 1 chr2L:4829177-4829297 ( 89) ATAAACAG 1 chr2L:413085-413205 ( 86) GAAAACAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.33748 E= 1.7e+000 77 -1314 131 -1314 -114 111 -1314 54 157 -174 -1314 -1314 165 -1314 -1314 -1314 165 -1314 -1314 -1314 -1314 211 -1314 -64 165 -1314 -1314 -1314 131 -1314 -146 -111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 90 E= 1.7e+000 0.544444 0.000000 0.455556 0.000000 0.144444 0.400000 0.000000 0.455556 0.944444 0.055556 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.200000 1.000000 0.000000 0.000000 0.000000 0.788889 0.000000 0.066667 0.144444 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RYAAACAA MEME-2 regular expression -------------------------------------------------------------------------------- [AG][TC]AAA[CT]AA -------------------------------------------------------------------------------- Time 13.67 secs. ******************************************************************************** ******************************************************************************** MOTIF DTTTGYTT MEME-3 width = 8 sites = 45 llr = 367 E-value = 2.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif DTTTGYTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4::::::: pos.-specific C :::::5:: probability G 3:::a::1 matrix T 4aaa:5a9 bits 2.4 * 2.2 * 2.0 * 1.7 **** * Relative 1.5 **** * Entropy 1.2 **** ** (11.8 bits) 1.0 ******* 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel TTTTGTTT consensus A C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTTTGYTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22661310-22661430 21 1.83e-05 ATAAAAATAT GTTTGCTT AGTGAGCAAA chrX:16573807-16573927 13 1.83e-05 ATGTTTATGT GTTTGCTT TGCGGTGTCT chr3L:11107586-11107706 30 1.83e-05 TATTCATTTT GTTTGCTT GTCAGTCACT chr2R:22586769-22586889 18 1.83e-05 ATATTCGGTT GTTTGCTT AAATTGTTAA chrX:6638238-6638358 107 1.83e-05 TTGCAGTCAC GTTTGCTT AATAAA chr3L:4025867-4025987 77 4.95e-05 CGTCGAATGT TTTTGCTT TTATTTATTC chr3L:12270014-12270134 97 4.95e-05 ATATTTATTC TTTTGCTT ATTAAAGTAT chr2R:10079886-10080006 34 4.95e-05 TAATTTATAA TTTTGCTT AGTTATCTCT chr2R:15515770-15515890 74 4.95e-05 TTTTATTTTG TTTTGCTT TGTTGAAGTT chr3R:20317732-20317852 60 4.95e-05 TTTGAGATAT TTTTGCTT GGCAAACATT chr2L:2168335-2168455 54 8.15e-05 AATGTTTACG ATTTGCTT GAGTTTCAGT chr2R:6668889-6669009 42 8.15e-05 TATAAAACTC ATTTGCTT TCAAAGTCTA chr2L:937061-937181 77 8.15e-05 GCACTGAAGA ATTTGCTT ATGGTTAATA chr3R:7217306-7217426 111 8.15e-05 AGGTGACAAT ATTTGCTT AA chr2L:13839190-13839310 64 8.15e-05 ATATCATTCC ATTTGCTT ACATTCAGAT chr2L:1931780-1931900 25 8.15e-05 AGGCAATTTC ATTTGCTT ATGTTTATGT chr2L:8938121-8938241 49 1.12e-04 GGTTATAAAT GTTTGTTT AACTTTGTTG chr2L:18944875-18944995 29 1.12e-04 ctgcgtgctt gtttgttt gttcgtttgt chr2R:24028420-24028540 23 1.12e-04 ACAAACCACT GTTTGTTT CTATAGACTT chr2R:15529374-15529494 59 1.12e-04 AGAAGTAGTT GTTTGTTT GCCAATAAAC chr2L:9509804-9509924 54 1.12e-04 GAATGTGATT GTTTGTTT CCAATTTGAC chr3R:9701424-9701544 79 1.65e-04 GATTTTGGCA TTTTGTTT ATTGACTTTC chr2R:16610088-16610208 14 1.65e-04 CTGACGAAAG TTTTGTTT TATGCTGGCC chr2L:21218865-21218985 43 1.65e-04 TCTCAGTTGT TTTTGTTT TCGCGTTGTT chr2R:21312503-21312623 101 1.65e-04 AGCAGCTGTT TTTTGTTT ACAAGCTTCG chr3R:5413167-5413287 33 1.65e-04 ATTTTATGAC TTTTGTTT TAAATTGTCA chr2L:3323751-3323871 73 1.65e-04 AATGCGCGAC TTTTGTTT GCGCTGGGTA chr3L:17625128-17625248 79 1.65e-04 TAGTCTAGCT TTTTGTTT ATGTACAAAT chr2L:5095577-5095697 72 1.65e-04 AGTCTGTCTA TTTTGTTT GCGGTCTGCG chr2R:15247389-15247509 27 1.65e-04 CAGACCCCAC TTTTGTTT TATTAGTTTT chr2L:17558266-17558386 84 1.65e-04 GTTTCCTATT TTTTGTTT GTGTTGCTGA chr3L:16975016-16975136 6 1.65e-04 ttgta ttttgttt atttgccttt chr3L:960722-960842 65 1.65e-04 GCCGAGTGGT TTTTGTTT GCGGAAGGCA chrX:17293515-17293635 5 2.19e-04 AGCA ATTTGTTT TTATTTTATA chr3L:21412277-21412397 84 2.19e-04 TATTTGAACA ATTTGTTT CAAAGTCACA chr2L:15909984-15910104 82 2.19e-04 ACAGAGCACT ATTTGTTT GGCCGAATGG chr3L:18997188-18997308 82 2.19e-04 AGTCCAATTT ATTTGTTT TTCTTGTTTA chr2R:19138067-19138187 100 2.19e-04 GGTTCTTTTG ATTTGTTT CCCTATCATG chr3L:20406378-20406498 61 2.19e-04 ATCTGATAAG atttgttt atttatttat chr2L:13158061-13158181 43 2.19e-04 AGTATGCAAT ATTTGTTT TCAAATCAGA chr3L:18895110-18895230 61 2.30e-04 GGGGCGCGAT GTTTGCTG TTGATCTCTT chr2R:23611341-23611461 92 2.30e-04 CTCACCCGCT GTTTGCTG ATAGCTGTGG chr2L:413085-413205 15 2.67e-04 TGATATAACT ATTTGCTG TGTTGTACCC chr3R:18903003-18903123 86 2.67e-04 ATAAGCGTAT ATTTGCTG GATTAATTAG chr3L:17539044-17539164 96 2.67e-04 TAGATATCTA ATTTGCTG ATCAAATACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTTTGYTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22661310-22661430 1.8e-05 20_[+3]_92 chrX:16573807-16573927 1.8e-05 12_[+3]_100 chr3L:11107586-11107706 1.8e-05 29_[+3]_83 chr2R:22586769-22586889 1.8e-05 17_[+3]_95 chrX:6638238-6638358 1.8e-05 106_[+3]_6 chr3L:4025867-4025987 5e-05 76_[+3]_36 chr3L:12270014-12270134 5e-05 96_[+3]_16 chr2R:10079886-10080006 5e-05 33_[+3]_79 chr2R:15515770-15515890 5e-05 73_[+3]_39 chr3R:20317732-20317852 5e-05 59_[+3]_53 chr2L:2168335-2168455 8.1e-05 53_[+3]_59 chr2R:6668889-6669009 8.1e-05 41_[+3]_71 chr2L:937061-937181 8.1e-05 76_[+3]_36 chr3R:7217306-7217426 8.1e-05 110_[+3]_2 chr2L:13839190-13839310 8.1e-05 63_[+3]_49 chr2L:1931780-1931900 8.1e-05 24_[+3]_88 chr2L:8938121-8938241 0.00011 48_[+3]_64 chr2L:18944875-18944995 0.00011 28_[+3]_84 chr2R:24028420-24028540 0.00011 22_[+3]_90 chr2R:15529374-15529494 0.00011 58_[+3]_54 chr2L:9509804-9509924 0.00011 53_[+3]_59 chr3R:9701424-9701544 0.00017 78_[+3]_34 chr2R:16610088-16610208 0.00017 13_[+3]_99 chr2L:21218865-21218985 0.00017 42_[+3]_70 chr2R:21312503-21312623 0.00017 100_[+3]_12 chr3R:5413167-5413287 0.00017 32_[+3]_80 chr2L:3323751-3323871 0.00017 72_[+3]_40 chr3L:17625128-17625248 0.00017 78_[+3]_34 chr2L:5095577-5095697 0.00017 71_[+3]_41 chr2R:15247389-15247509 0.00017 26_[+3]_86 chr2L:17558266-17558386 0.00017 83_[+3]_29 chr3L:16975016-16975136 0.00017 5_[+3]_107 chr3L:960722-960842 0.00017 64_[+3]_48 chrX:17293515-17293635 0.00022 4_[+3]_108 chr3L:21412277-21412397 0.00022 83_[+3]_29 chr2L:15909984-15910104 0.00022 81_[+3]_31 chr3L:18997188-18997308 0.00022 81_[+3]_31 chr2R:19138067-19138187 0.00022 99_[+3]_13 chr3L:20406378-20406498 0.00022 60_[+3]_52 chr2L:13158061-13158181 0.00022 42_[+3]_70 chr3L:18895110-18895230 0.00023 60_[+3]_52 chr2R:23611341-23611461 0.00023 91_[+3]_21 chr2L:413085-413205 0.00027 14_[+3]_98 chr3R:18903003-18903123 0.00027 85_[+3]_27 chr3L:17539044-17539164 0.00027 95_[+3]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTTTGYTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DTTTGYTT width=8 seqs=45 chr2R:22661310-22661430 ( 21) GTTTGCTT 1 chrX:16573807-16573927 ( 13) GTTTGCTT 1 chr3L:11107586-11107706 ( 30) GTTTGCTT 1 chr2R:22586769-22586889 ( 18) GTTTGCTT 1 chrX:6638238-6638358 ( 107) GTTTGCTT 1 chr3L:4025867-4025987 ( 77) TTTTGCTT 1 chr3L:12270014-12270134 ( 97) TTTTGCTT 1 chr2R:10079886-10080006 ( 34) TTTTGCTT 1 chr2R:15515770-15515890 ( 74) TTTTGCTT 1 chr3R:20317732-20317852 ( 60) TTTTGCTT 1 chr2L:2168335-2168455 ( 54) ATTTGCTT 1 chr2R:6668889-6669009 ( 42) ATTTGCTT 1 chr2L:937061-937181 ( 77) ATTTGCTT 1 chr3R:7217306-7217426 ( 111) ATTTGCTT 1 chr2L:13839190-13839310 ( 64) ATTTGCTT 1 chr2L:1931780-1931900 ( 25) ATTTGCTT 1 chr2L:8938121-8938241 ( 49) GTTTGTTT 1 chr2L:18944875-18944995 ( 29) GTTTGTTT 1 chr2R:24028420-24028540 ( 23) GTTTGTTT 1 chr2R:15529374-15529494 ( 59) GTTTGTTT 1 chr2L:9509804-9509924 ( 54) GTTTGTTT 1 chr3R:9701424-9701544 ( 79) TTTTGTTT 1 chr2R:16610088-16610208 ( 14) TTTTGTTT 1 chr2L:21218865-21218985 ( 43) TTTTGTTT 1 chr2R:21312503-21312623 ( 101) TTTTGTTT 1 chr3R:5413167-5413287 ( 33) TTTTGTTT 1 chr2L:3323751-3323871 ( 73) TTTTGTTT 1 chr3L:17625128-17625248 ( 79) TTTTGTTT 1 chr2L:5095577-5095697 ( 72) TTTTGTTT 1 chr2R:15247389-15247509 ( 27) TTTTGTTT 1 chr2L:17558266-17558386 ( 84) TTTTGTTT 1 chr3L:16975016-16975136 ( 6) TTTTGTTT 1 chr3L:960722-960842 ( 65) TTTTGTTT 1 chrX:17293515-17293635 ( 5) ATTTGTTT 1 chr3L:21412277-21412397 ( 84) ATTTGTTT 1 chr2L:15909984-15910104 ( 82) ATTTGTTT 1 chr3L:18997188-18997308 ( 82) ATTTGTTT 1 chr2R:19138067-19138187 ( 100) ATTTGTTT 1 chr3L:20406378-20406498 ( 61) ATTTGTTT 1 chr2L:13158061-13158181 ( 43) ATTTGTTT 1 chr3L:18895110-18895230 ( 61) GTTTGCTG 1 chr2R:23611341-23611461 ( 92) GTTTGCTG 1 chr2L:413085-413205 ( 15) ATTTGCTG 1 chr3R:18903003-18903123 ( 86) ATTTGCTG 1 chr3L:17539044-17539164 ( 96) ATTTGCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTTTGYTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3386 E= 2.3e+001 16 -1214 54 27 -1214 -1214 -1214 168 -1214 -1214 -1214 168 -1214 -1214 -1214 168 -1214 -1214 245 -1214 -1214 133 -1214 77 -1214 -1214 -1214 168 -1214 -1214 -72 151 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTTTGYTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 2.3e+001 0.355556 0.000000 0.266667 0.377778 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.466667 0.000000 0.533333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.888889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTTTGYTT MEME-3 regular expression -------------------------------------------------------------------------------- [TAG]TTTG[TC]TT -------------------------------------------------------------------------------- Time 19.70 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCATAAA MEME-4 width = 8 sites = 20 llr = 190 E-value = 5.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCATAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a3a8a pos.-specific C :aa:::3: probability G a:::2::: matrix T ::::6::: bits 2.4 *** 2.2 *** 2.0 *** 1.7 **** * * Relative 1.5 **** * * Entropy 1.2 **** * * (13.7 bits) 1.0 **** *** 0.7 **** *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCATAAA consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:11736123-11736243 76 2.02e-05 TAAAACCTGG GCCATAAA AGATAACCCA chr2R:13937244-13937364 68 2.02e-05 ATTCCATTTC GCCATAAA GATATGGAGA chr2R:21082683-21082803 41 2.02e-05 TTCGAAAAGA GCCATAAA TCAAATATTG chr3L:1169737-1169857 72 2.02e-05 GCTCGGGCCT GCCATAAA ATAAATTACT chr2L:5151537-5151657 4 2.02e-05 TTG GCCATAAA AATAATAGCT chr2R:20252200-20252320 48 2.02e-05 ATTTATGATG GCCATAAA GAGGTGTTTT chr3R:23139124-23139244 35 2.02e-05 CTGGAAGTCC GCCATAAA AGCCCAATAG chr3R:26185420-26185540 11 2.02e-05 CCTAAATCAA GCCATAAA TGCCGGTCAT chr2L:3228822-3228942 81 3.20e-05 TAGGTTGTGT GCCATACA ATTTACTCAG chr3R:9430543-9430663 75 3.20e-05 TGCAGCGCAT GCCATACA GTTGCAAACG chrX:13208129-13208249 44 3.20e-05 TTAGTTAATT GCCATACA GGTATCATCA chr2L:17558266-17558386 54 3.20e-05 CAAATTTAAA GCCATACA TTGAATAATA chr3R:16011776-16011896 35 4.38e-05 TTATTAGTTT GCCAGAAA AGTGTTTTAT chr3R:7524291-7524411 47 4.38e-05 AAGGCTTCTT GCCAGAAA ATCAAGGGAA chr3L:20449821-20449941 16 4.38e-05 ATATACACAA GCCAGAAA AAAAAATGCC chr2R:13586391-13586511 1 6.45e-05 . GCCAAAAA ACGCCAGCGA chr2R:15480291-15480411 105 6.45e-05 TGTTGTGCTA GCCAAAAA AAGTTCGA chr3L:18020982-18021102 60 6.45e-05 GTTCGCCATC GCCAAAAA AGCTTCTCGC chr3L:16885213-16885333 24 6.45e-05 TGGTTTAAAA GCCAAAAA TAAAAGGTAA chr3L:17531537-17531657 97 8.34e-05 TCTGCAGATT GCCAAACA GCTGAGTCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:11736123-11736243 2e-05 75_[+4]_37 chr2R:13937244-13937364 2e-05 67_[+4]_45 chr2R:21082683-21082803 2e-05 40_[+4]_72 chr3L:1169737-1169857 2e-05 71_[+4]_41 chr2L:5151537-5151657 2e-05 3_[+4]_109 chr2R:20252200-20252320 2e-05 47_[+4]_65 chr3R:23139124-23139244 2e-05 34_[+4]_78 chr3R:26185420-26185540 2e-05 10_[+4]_102 chr2L:3228822-3228942 3.2e-05 80_[+4]_32 chr3R:9430543-9430663 3.2e-05 74_[+4]_38 chrX:13208129-13208249 3.2e-05 43_[+4]_69 chr2L:17558266-17558386 3.2e-05 53_[+4]_59 chr3R:16011776-16011896 4.4e-05 34_[+4]_78 chr3R:7524291-7524411 4.4e-05 46_[+4]_66 chr3L:20449821-20449941 4.4e-05 15_[+4]_97 chr2R:13586391-13586511 6.5e-05 [+4]_112 chr2R:15480291-15480411 6.5e-05 104_[+4]_8 chr3L:18020982-18021102 6.5e-05 59_[+4]_53 chr3L:16885213-16885333 6.5e-05 23_[+4]_89 chr3L:17531537-17531657 8.3e-05 96_[+4]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCATAAA width=8 seqs=20 chr2L:11736123-11736243 ( 76) GCCATAAA 1 chr2R:13937244-13937364 ( 68) GCCATAAA 1 chr2R:21082683-21082803 ( 41) GCCATAAA 1 chr3L:1169737-1169857 ( 72) GCCATAAA 1 chr2L:5151537-5151657 ( 4) GCCATAAA 1 chr2R:20252200-20252320 ( 48) GCCATAAA 1 chr3R:23139124-23139244 ( 35) GCCATAAA 1 chr3R:26185420-26185540 ( 11) GCCATAAA 1 chr2L:3228822-3228942 ( 81) GCCATACA 1 chr3R:9430543-9430663 ( 75) GCCATACA 1 chrX:13208129-13208249 ( 44) GCCATACA 1 chr2L:17558266-17558386 ( 54) GCCATACA 1 chr3R:16011776-16011896 ( 35) GCCAGAAA 1 chr3R:7524291-7524411 ( 47) GCCAGAAA 1 chr3L:20449821-20449941 ( 16) GCCAGAAA 1 chr2R:13586391-13586511 ( 1) GCCAAAAA 1 chr2R:15480291-15480411 ( 105) GCCAAAAA 1 chr3L:18020982-18021102 ( 60) GCCAAAAA 1 chr3L:16885213-16885333 ( 24) GCCAAAAA 1 chr3L:17531537-17531657 ( 97) GCCAAACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.89693 E= 5.1e+002 -1097 -1097 245 -1097 -1097 243 -1097 -1097 -1097 243 -1097 -1097 165 -1097 -1097 -1097 -35 -1097 -29 94 165 -1097 -1097 -1097 123 43 -1097 -1097 165 -1097 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 5.1e+002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.150000 0.600000 1.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-4 regular expression -------------------------------------------------------------------------------- GCCA[TA]A[AC]A -------------------------------------------------------------------------------- Time 25.63 secs. ******************************************************************************** ******************************************************************************** MOTIF GCSSAGCK MEME-5 width = 8 sites = 16 llr = 157 E-value = 2.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCSSAGCK MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::7::: pos.-specific C :964::a: probability G a146:a:4 matrix T ::::3::6 bits 2.4 * ** 2.2 ** ** 2.0 ** ** 1.7 ** ** Relative 1.5 **** ** Entropy 1.2 **** ** (14.1 bits) 1.0 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCGAGCT consensus GCT G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSSAGCK MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21082683-21082803 68 2.27e-06 GGTTGAGTAC GCCGAGCG GAACAAGAAA chr2L:2729994-2730114 92 1.07e-05 TAGTCGAGCC GCCCAGCG TTGTACTTAG chr2R:22586769-22586889 83 1.07e-05 GGAGCAAAAA GCGGAGCG TCGAAATAAA chr2L:6465652-6465772 106 1.07e-05 AAGCTCTCCA GCGGAGCG GTTACAA chr2L:7215817-7215937 96 1.07e-05 GTTTGCATGT GCCGAGCT AACCGTTCGC chr3L:19132754-19132874 11 2.06e-05 GCCAGCGGAA GCGGAGCT GTAGAGCGCC chr2L:20390148-20390268 104 2.06e-05 TCGGCAAAGA GCCCAGCT GTGAAAAAA chr2L:7217078-7217198 61 2.06e-05 AAGCCTCGTT GCCCAGCT GATTCAACTT chr2L:19576781-19576901 82 2.67e-05 AAAAAACAAG GCGCAGCT GTATTGTGCG chrX:5664336-5664456 53 2.67e-05 GAGCGGAAGT GCGCAGCT CTCCCCGGCG chr3L:14706723-14706843 107 3.49e-05 GAAAGTCTGC GCCGTGCT ACAAAT chr3L:11528458-11528578 74 3.49e-05 AAAGTGCGTG GCCGTGCT CATGGGCATA chr2L:5095577-5095697 87 3.49e-05 TTTGCGGTCT GCGGTGCG TGCTCATTCC chr3R:14709010-14709130 106 4.47e-05 TAAATTATTT GCCCTGCT TCTGGCG chr2L:18944875-18944995 16 4.47e-05 ctgtttgtct gcgctgcg tgcttgtttg chr3R:9939601-9939721 86 5.07e-05 GTAAACAACT GGCGAGCG GGAAAGAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSSAGCK MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21082683-21082803 2.3e-06 67_[+5]_45 chr2L:2729994-2730114 1.1e-05 91_[+5]_21 chr2R:22586769-22586889 1.1e-05 82_[+5]_30 chr2L:6465652-6465772 1.1e-05 105_[+5]_7 chr2L:7215817-7215937 1.1e-05 95_[+5]_17 chr3L:19132754-19132874 2.1e-05 10_[+5]_102 chr2L:20390148-20390268 2.1e-05 103_[+5]_9 chr2L:7217078-7217198 2.1e-05 60_[+5]_52 chr2L:19576781-19576901 2.7e-05 81_[+5]_31 chrX:5664336-5664456 2.7e-05 52_[+5]_60 chr3L:14706723-14706843 3.5e-05 106_[+5]_6 chr3L:11528458-11528578 3.5e-05 73_[+5]_39 chr2L:5095577-5095697 3.5e-05 86_[+5]_26 chr3R:14709010-14709130 4.5e-05 105_[+5]_7 chr2L:18944875-18944995 4.5e-05 15_[+5]_97 chr3R:9939601-9939721 5.1e-05 85_[+5]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSSAGCK MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCSSAGCK width=8 seqs=16 chr2R:21082683-21082803 ( 68) GCCGAGCG 1 chr2L:2729994-2730114 ( 92) GCCCAGCG 1 chr2R:22586769-22586889 ( 83) GCGGAGCG 1 chr2L:6465652-6465772 ( 106) GCGGAGCG 1 chr2L:7215817-7215937 ( 96) GCCGAGCT 1 chr3L:19132754-19132874 ( 11) GCGGAGCT 1 chr2L:20390148-20390268 ( 104) GCCCAGCT 1 chr2L:7217078-7217198 ( 61) GCCCAGCT 1 chr2L:19576781-19576901 ( 82) GCGCAGCT 1 chrX:5664336-5664456 ( 53) GCGCAGCT 1 chr3L:14706723-14706843 ( 107) GCCGTGCT 1 chr3L:11528458-11528578 ( 74) GCCGTGCT 1 chr2L:5095577-5095697 ( 87) GCGGTGCG 1 chr3R:14709010-14709130 ( 106) GCCCTGCT 1 chr2L:18944875-18944995 ( 16) GCGCTGCG 1 chr3R:9939601-9939721 ( 86) GGCGAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSSAGCK MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 2.3e+003 -1064 -1064 245 -1064 -1064 234 -155 -1064 -1064 160 126 -1064 -1064 124 162 -1064 111 -1064 -1064 0 -1064 -1064 245 -1064 -1064 243 -1064 -1064 -1064 -1064 126 85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSSAGCK MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.3e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.937500 0.062500 0.000000 0.000000 0.562500 0.437500 0.000000 0.000000 0.437500 0.562500 0.000000 0.687500 0.000000 0.000000 0.312500 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.437500 0.562500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSSAGCK MEME-5 regular expression -------------------------------------------------------------------------------- GC[CG][GC][AT]GC[TG] -------------------------------------------------------------------------------- Time 31.53 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:20494912-20495032 3.22e-02 120 chr3R:11201515-11201635 3.11e-03 77_[+2(2.07e-05)]_35 chr3R:15402775-15402895 2.52e-01 120 chr2R:7896317-7896437 9.79e-01 120 chr3L:17539044-17539164 1.86e-01 120 chr3R:11665984-11666104 2.73e-02 75_[+1(3.43e-05)]_37 chr3R:10131127-10131247 4.79e-01 120 chrX:9987780-9987900 4.75e-01 120 chr3R:12716385-12716505 5.56e-02 120 chr3R:11243170-11243290 9.69e-01 120 chr2L:9509804-9509924 2.11e-02 120 chr3R:10186203-10186323 5.74e-01 120 chr3L:4461828-4461948 6.80e-01 120 chr2L:7778430-7778550 9.62e-02 110_[+2(9.16e-05)]_2 chr3R:19613058-19613178 1.70e-01 95_[+2(5.56e-05)]_17 chr3R:20317732-20317852 2.04e-03 59_[+3(4.95e-05)]_53 chr3R:5696521-5696641 7.72e-02 120 chr2L:13158061-13158181 1.49e-01 120 chr3L:16885213-16885333 1.78e-02 23_[+4(6.45e-05)]_89 chrX:6799766-6799886 1.24e-01 120 chr3L:329316-329436 9.88e-01 120 chrX:18082840-18082960 8.08e-01 120 chr2L:4829177-4829297 2.48e-02 10_[+1(5.26e-05)]_102 chr3L:4852810-4852930 8.67e-01 120 chr2R:7014463-7014583 7.53e-02 120 chr2R:15515770-15515890 3.50e-01 73_[+3(4.95e-05)]_39 chr3R:23284399-23284519 3.76e-04 22_[+2(2.07e-05)]_73_[+1(2.67e-05)]_\ 9 chrX:15640097-15640217 1.93e-01 120 chrX:16890724-16890844 5.68e-02 120 chr3R:21271374-21271494 1.08e-01 96_[+2(9.16e-05)]_16 chrX:6439643-6439763 2.65e-01 120 chr3R:18903003-18903123 4.03e-01 120 chr3L:14992955-14993075 4.14e-02 120 chr2L:8948162-8948282 1.80e-01 120 chr3L:15814183-15814303 7.14e-02 120 chr3R:25152453-25152573 3.64e-01 120 chr3L:15632834-15632954 1.88e-03 54_[+1(9.36e-05)]_58 chr3R:13802329-13802449 9.37e-02 93_[+5(8.30e-05)]_19 chr2R:14217648-14217768 8.71e-03 89_[+1(2.22e-06)]_23 chr3R:25855770-25855890 5.74e-01 120 chr2R:22390368-22390488 6.37e-02 55_[+5(8.30e-05)]_57 chr3R:15149817-15149937 9.91e-01 120 chr3R:9448500-9448620 5.46e-01 120 chr3R:26185420-26185540 3.46e-02 10_[+4(2.02e-05)]_102 chr3L:917359-917479 6.19e-01 120 chr3L:960722-960842 5.34e-03 120 chr2L:3323552-3323672 1.74e-01 120 chrX:9431589-9431709 3.03e-01 120 chrX:11441079-11441199 6.21e-01 120 chr3R:7591338-7591458 4.05e-01 120 chr3L:12045605-12045725 1.92e-01 120 chr3L:17531537-17531657 6.13e-03 4_[+1(2.16e-05)]_84_[+4(8.34e-05)]_\ 16 chr2L:125474-125594 1.86e-01 120 chr2R:16581731-16581851 2.09e-01 120 chrX:16420172-16420292 9.25e-01 120 chr2L:20831207-20831327 3.39e-01 120 chr3R:15231890-15232010 3.79e-03 102_[+1(2.16e-05)]_10 chr2L:1931780-1931900 1.82e-04 24_[+3(8.15e-05)]_22_[+1(3.94e-05)]_\ 5_[+2(5.56e-05)]_45 chrX:18004359-18004479 6.06e-01 120 chr2R:15846342-15846462 1.04e-02 24_[+2(2.07e-05)]_88 chr2L:13839190-13839310 3.74e-01 63_[+3(8.15e-05)]_49 chr2R:15529374-15529494 8.88e-03 120 chr2L:1637994-1638114 4.24e-02 120 chr3L:2254455-2254575 7.22e-03 7_[+1(9.36e-05)]_105 chr4:1199355-1199475 4.37e-01 120 chr2R:10079886-10080006 4.17e-02 33_[+3(4.95e-05)]_79 chr2L:7215817-7215937 1.11e-03 95_[+5(1.07e-05)]_17 chr2R:17714544-17714664 2.33e-01 120 chr3L:15689721-15689841 9.64e-03 34_[+2(2.07e-05)]_29_[+2(2.07e-05)]_\ 41 chr3L:11065964-11066084 5.50e-01 120 chr3R:24798773-24798893 7.34e-01 120 chr3L:18020982-18021102 1.25e-01 59_[+4(6.45e-05)]_53 chr2L:10211346-10211466 8.79e-02 120 chr2L:413085-413205 1.06e-01 120 chr2R:7628733-7628853 6.37e-02 11_[+2(5.56e-05)]_101 chr3L:13903421-13903541 9.68e-01 120 chr3R:23139124-23139244 4.38e-02 34_[+4(2.02e-05)]_78 chr3L:20449821-20449941 4.90e-03 15_[+4(4.38e-05)]_97 chr3L:17615985-17616105 6.04e-04 77_[+2(2.07e-05)]_35 chrX:11885460-11885580 1.26e-01 120 chr3R:24102527-24102647 8.90e-01 120 chr3R:7524291-7524411 4.01e-05 46_[+4(4.38e-05)]_16_[+1(5.71e-06)]_\ 42 chr3L:20406378-20406498 2.03e-02 120 chr2L:10397016-10397136 1.16e-02 120 chr3R:19873326-19873446 4.14e-01 120 chr3L:3078949-3079069 4.54e-01 120 chr2L:7217078-7217198 9.20e-04 60_[+5(2.06e-05)]_11_[+1(1.37e-05)]_\ 33 chr3R:14479760-14479880 6.83e-02 120 chr3L:8093753-8093873 7.92e-05 6_[+1(8.53e-05)]_15_[+2(2.07e-05)]_\ 83 chr3R:26987616-26987736 6.17e-01 120 chr3R:25275469-25275589 2.73e-01 120 chr3L:16840635-16840755 7.34e-01 120 chrX:6638238-6638358 6.99e-03 106_[+3(1.83e-05)]_6 chr2R:12951457-12951577 9.95e-01 120 chr3L:21859841-21859961 9.71e-01 120 chr2L:4463455-4463575 8.80e-02 120 chr3L:11049571-11049691 3.76e-02 120 chr3L:1742119-1742239 1.01e-01 120 chr3R:17007469-17007589 1.79e-01 120 chr3L:16975016-16975136 3.32e-01 120 chr3L:3306648-3306768 2.99e-01 120 chrX:5664336-5664456 5.34e-03 52_[+5(2.67e-05)]_60 chr3R:28959252-28959372 8.14e-01 120 chr2L:17558266-17558386 1.67e-02 53_[+4(3.20e-05)]_59 chr2R:20252200-20252320 1.96e-03 29_[+1(8.53e-05)]_10_[+4(2.02e-05)]_\ 65 chr3R:30200101-30200221 7.79e-01 120 chr2L:16819826-16819946 3.84e-01 120 chrX:17694929-17695049 7.15e-01 120 chr2L:14399416-14399536 7.28e-01 120 chr2R:7011459-7011579 4.02e-01 120 chr3L:6157763-6157883 5.52e-01 120 chrX:6698377-6698497 7.84e-04 41_[+1(4.20e-05)]_44_[+2(5.56e-05)]_\ 19 chr2L:5113620-5113740 5.24e-01 120 chr3R:30198946-30199066 6.74e-02 31_[+2(2.07e-05)]_81 chr2L:5151537-5151657 1.36e-03 3_[+4(2.02e-05)]_109 chr2L:85227-85347 2.20e-01 120 chr3L:11785457-11785577 9.18e-01 120 chr2R:23611341-23611461 1.15e-02 120 chr2R:15247389-15247509 7.16e-03 120 chr2R:24028420-24028540 1.23e-01 120 chr3L:1169737-1169857 1.54e-04 27_[+1(4.68e-05)]_21_[+5(9.27e-05)]_\ 7_[+4(2.02e-05)]_41 chrX:515808-515928 5.07e-01 120 chr3R:7217306-7217426 9.71e-02 110_[+3(8.15e-05)]_2 chr3L:16494904-16495024 6.38e-02 41_[+2(9.16e-05)]_71 chrX:13208129-13208249 2.91e-02 43_[+4(3.20e-05)]_69 chr2R:19138067-19138187 6.33e-02 120 chr3R:9430543-9430663 1.54e-02 74_[+4(3.20e-05)]_38 chr2L:19576781-19576901 3.02e-03 81_[+5(2.67e-05)]_31 chr2L:5095577-5095697 8.41e-04 86_[+5(3.49e-05)]_26 chr3L:18997188-18997308 1.83e-01 120 chr3L:10827471-10827591 6.97e-01 120 chr2L:22144291-22144411 1.97e-01 120 chr2R:21082683-21082803 2.61e-05 40_[+4(2.02e-05)]_19_[+5(2.27e-06)]_\ 45 chr2L:7254900-7255020 6.86e-01 120 chr3L:17625128-17625248 8.44e-02 120 chr3R:22108459-22108579 9.11e-01 120 chr2R:16225503-16225623 6.46e-03 120 chr3R:5746762-5746882 1.27e-01 120 chrX:10462086-10462206 8.80e-01 120 chr3L:8077312-8077432 1.34e-01 120 chr2R:22247794-22247914 2.95e-01 120 chr2L:6465652-6465772 2.18e-02 105_[+5(1.07e-05)]_7 chr3R:29620981-29621101 5.54e-02 120 chr2R:19461661-19461781 5.08e-01 120 chr3L:13912909-13913029 5.10e-03 120 chr2R:22586769-22586889 1.88e-05 17_[+3(1.83e-05)]_57_[+5(1.07e-05)]_\ 30 chrX:3968543-3968663 7.19e-03 120 chr3L:19847113-19847233 9.55e-03 50_[+4(2.02e-05)]_62 chr2L:14141354-14141474 8.36e-01 120 chr3L:12270014-12270134 5.13e-02 96_[+3(4.95e-05)]_16 chr2L:20390148-20390268 1.40e-03 73_[+2(9.16e-05)]_[+2(9.16e-05)]_14_\ [+5(2.06e-05)]_9 chr2R:12035090-12035210 3.35e-01 120 chr2R:17085651-17085771 9.10e-01 120 chr2R:7745232-7745352 2.31e-01 120 chr2L:18944875-18944995 2.59e-04 15_[+5(4.47e-05)]_85_[+1(4.20e-05)]_\ 4 chr2R:15480291-15480411 1.46e-04 83_[+1(1.81e-05)]_13_[+4(6.45e-05)]_\ 8 chr3R:11688318-11688438 1.24e-01 120 chr3L:15591305-15591425 2.48e-02 120 chr3R:14657178-14657298 2.22e-01 120 chr3L:17616903-17617023 1.54e-01 120 chr2R:14574208-14574328 1.09e-01 17_[+2(9.16e-05)]_95 chr2L:15909984-15910104 5.80e-04 33_[+1(2.16e-05)]_79 chr3L:10679956-10680076 2.01e-01 120 chr2R:13909053-13909173 2.14e-01 55_[+2(9.16e-05)]_57 chr3L:11107586-11107706 7.03e-02 29_[+3(1.83e-05)]_83 chr3R:9939601-9939721 7.72e-04 75_[+2(5.56e-05)]_2_[+5(5.07e-05)]_\ 27 chr2L:10249776-10249896 3.68e-01 120 chr2R:12644270-12644390 5.27e-02 120 chr3L:17644243-17644363 8.99e-01 120 chr3R:16011776-16011896 2.39e-03 34_[+4(4.38e-05)]_78 chr3L:14549346-14549466 2.20e-01 120 chr2L:20077903-20078023 1.88e-01 120 chr3L:8997713-8997833 1.49e-01 120 chr3R:21207007-21207127 1.77e-01 120 chr3L:21412277-21412397 1.68e-01 120 chr2L:5096954-5097074 4.88e-01 120 chr2R:15155196-15155316 1.66e-01 120 chr2L:18966972-18967092 5.66e-01 120 chr3R:27919516-27919636 7.54e-01 120 chr2R:13937244-13937364 4.25e-02 67_[+4(2.02e-05)]_45 chr2L:3228822-3228942 3.77e-02 80_[+4(3.20e-05)]_19_[+4(8.34e-05)]_\ 5 chr2L:3323751-3323871 4.36e-04 45_[+1(9.23e-06)]_67 chr3L:1737997-1738117 3.96e-01 120 chr3R:5413167-5413287 1.64e-01 120 chr3L:18895110-18895230 1.95e-01 120 chr3L:11528458-11528578 3.46e-03 73_[+5(3.49e-05)]_39 chr2R:21312503-21312623 8.64e-02 120 chr2R:7070886-7071006 1.08e-02 88_[+1(9.36e-05)]_24 chr2R:18172020-18172140 4.98e-03 98_[+2(2.07e-05)]_14 chr2R:11190881-11191001 2.46e-01 120 chr3R:17526200-17526320 6.02e-01 120 chrX:16573807-16573927 2.99e-03 12_[+3(1.83e-05)]_100 chr3R:19223570-19223690 4.37e-04 28_[+1(4.41e-06)]_84 chr2R:21549085-21549205 7.87e-03 31_[+1(5.71e-06)]_81 chr2R:6023240-6023360 6.16e-02 120 chr2L:7940792-7940912 2.38e-01 120 chr2L:12463157-12463277 5.06e-02 120 chr2L:937061-937181 3.32e-01 76_[+3(8.15e-05)]_36 chr2R:6811055-6811175 2.66e-03 49_[+2(2.07e-05)]_63 chr3L:8689816-8689936 1.70e-02 74_[+2(2.07e-05)]_[+2(9.16e-05)]_30 chr2L:868352-868472 9.38e-02 14_[+1(3.43e-05)]_98 chr2R:22661310-22661430 3.26e-03 20_[+3(1.83e-05)]_92 chr3R:20833134-20833254 2.88e-02 120 chr2L:2872705-2872825 2.51e-01 120 chr3L:2845290-2845410 3.31e-01 120 chr3L:14622575-14622695 3.99e-02 120 chr3L:9360379-9360499 9.63e-01 120 chr2R:10122612-10122732 8.86e-01 120 chr3R:23725971-23726091 3.34e-03 68_[+2(2.07e-05)]_44 chr3L:21321979-21322099 3.85e-01 120 chr2L:21218865-21218985 3.73e-02 61_[+2(5.56e-05)]_51 chr3L:10734637-10734757 1.37e-01 120 chr3L:3320185-3320305 4.31e-01 120 chr2L:20840570-20840690 7.16e-02 28_[+1(6.06e-05)]_84 chr3L:12889377-12889497 1.16e-01 120 chrX:12547721-12547841 1.04e-01 120 chr3L:3411787-3411907 2.24e-01 120 chrX:3399393-3399513 4.16e-01 120 chr3R:26333440-26333560 8.08e-01 120 chr3L:14706723-14706843 6.07e-02 106_[+5(3.49e-05)]_6 chr2L:2729994-2730114 2.68e-04 10_[+1(1.81e-05)]_73_[+5(1.07e-05)]_\ 21 chr2L:11736123-11736243 1.72e-03 75_[+4(2.02e-05)]_37 chr3L:7782359-7782479 2.44e-01 120 chr2R:18539984-18540104 1.64e-03 82_[+1(2.22e-06)]_30 chr2R:6464943-6465063 8.47e-02 59_[+2(5.56e-05)]_10_[+2(5.56e-05)]_\ 35 chr2R:6668889-6669009 1.92e-01 41_[+3(8.15e-05)]_71 chr3L:19132754-19132874 2.77e-02 10_[+5(2.06e-05)]_102 chr3R:11663640-11663760 9.67e-01 120 chr2R:13586391-13586511 2.07e-02 [+4(6.45e-05)]_112 chr3L:17003603-17003723 8.07e-03 55_[+1(2.16e-05)]_9_[+1(6.76e-05)]_\ 40 chr3R:14709010-14709130 8.01e-03 105_[+5(4.47e-05)]_7 chr2R:10123718-10123838 7.77e-01 120 chr2R:10025855-10025975 7.98e-02 103_[+2(5.56e-05)]_9 chr2L:8938121-8938241 5.49e-03 94_[+3(8.15e-05)]_18 chr2R:17604622-17604742 8.89e-01 120 chrX:947663-947783 8.47e-01 120 chr2R:16610088-16610208 1.33e-04 24_[+1(9.23e-06)]_26_[+1(5.26e-05)]_\ 54 chr2R:23964747-23964867 1.39e-01 120 chr3L:4025867-4025987 7.84e-04 14_[+3(4.95e-05)]_32_[+2(2.07e-05)]_\ 14_[+3(4.95e-05)]_36 chr3R:14875736-14875856 3.56e-01 120 chr2R:13261830-13261950 2.19e-01 120 chr3L:14031224-14031344 8.16e-02 120 chr3L:15034395-15034515 2.91e-01 120 chr3R:29089777-29089897 9.10e-01 120 chrX:17293515-17293635 2.01e-01 120 chr2L:2168335-2168455 9.39e-02 53_[+3(8.15e-05)]_59 chr3L:629570-629690 3.42e-01 120 chr2R:22669220-22669340 1.02e-01 120 chr3L:14804720-14804840 2.81e-01 120 chr3R:9701424-9701544 1.43e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n05.farnam.hpc.yale.internal ********************************************************************************