******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG13204.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:16189197-16189317 1.0000 120 chr2R:14520895-14521015 1.0000 120 chr3R:11989381-11989501 1.0000 120 chr2L:11059341-11059461 1.0000 120 chrX:18257001-18257121 1.0000 120 chr2R:15482314-15482434 1.0000 120 chr3L:10913668-10913788 1.0000 120 chr3L:1077190-1077310 1.0000 120 chr3L:15123831-15123951 1.0000 120 chr3L:17400597-17400717 1.0000 120 chrX:18292310-18292430 1.0000 120 chr3R:8149329-8149449 1.0000 120 chr3R:12452057-12452177 1.0000 120 chr3R:4462896-4463016 1.0000 120 chr3R:22324550-22324670 1.0000 120 chr2R:6195844-6195964 1.0000 120 chr3R:5615660-5615780 1.0000 120 chr3L:21694391-21694511 1.0000 120 chr2L:9127190-9127310 1.0000 120 chr2L:8915880-8916000 1.0000 120 chr2R:8181349-8181469 1.0000 120 chr2R:8593409-8593529 1.0000 120 chr3R:14432138-14432258 1.0000 120 chrX:16670797-16670917 1.0000 120 chr3R:6259977-6260097 1.0000 120 chr3R:21722838-21722958 1.0000 120 chr3R:20310261-20310381 1.0000 120 chrX:13305382-13305502 1.0000 120 chrX:15611809-15611929 1.0000 120 chrX:18550902-18551022 1.0000 120 chr3L:22802083-22802203 1.0000 120 chr3L:660803-660923 1.0000 120 chr2R:22302662-22302782 1.0000 120 chr3L:4383729-4383849 1.0000 120 chr2R:15908419-15908539 1.0000 120 chr3R:16085352-16085472 1.0000 120 chr2R:22301891-22302011 1.0000 120 chr2L:16279004-16279124 1.0000 120 chr2R:8188782-8188902 1.0000 120 chrX:16621658-16621778 1.0000 120 chr2L:5465320-5465440 1.0000 120 chr2R:20161405-20161525 1.0000 120 chr3L:18058279-18058399 1.0000 120 chrX:18537243-18537363 1.0000 120 chrX:13304400-13304520 1.0000 120 chr3L:4687298-4687418 1.0000 120 chr2L:13923701-13923821 1.0000 120 chr3R:27685292-27685412 1.0000 120 chr2R:23565713-23565833 1.0000 120 chr3L:11022097-11022217 1.0000 120 chr3L:2566205-2566325 1.0000 120 chr3R:26064811-26064931 1.0000 120 chr2L:533813-533933 1.0000 120 chr2L:4822414-4822534 1.0000 120 chr2L:11074595-11074715 1.0000 120 chr3L:21883333-21883453 1.0000 120 chrX:1338098-1338218 1.0000 120 chr3L:6834981-6835101 1.0000 120 chr3R:5213465-5213585 1.0000 120 chr2R:9502794-9502914 1.0000 120 chr2R:7905547-7905667 1.0000 120 chr3L:9378533-9378653 1.0000 120 chr2L:20870011-20870131 1.0000 120 chr2L:11014360-11014480 1.0000 120 chr3R:28682122-28682242 1.0000 120 chr2R:18574659-18574779 1.0000 120 chr3L:21651573-21651693 1.0000 120 chr3R:8969397-8969517 1.0000 120 chr2R:15952163-15952283 1.0000 120 chr3R:21948262-21948382 1.0000 120 chr2R:17440229-17440349 1.0000 120 chr3L:21776903-21777023 1.0000 120 chr3L:17491823-17491943 1.0000 120 chr3L:17002294-17002414 1.0000 120 chr3R:30840824-30840944 1.0000 120 chr3L:3535849-3535969 1.0000 120 chrX:19314921-19315041 1.0000 120 chr3R:28895051-28895171 1.0000 120 chrX:2323852-2323972 1.0000 120 chr2R:7174419-7174539 1.0000 120 chr2R:10200492-10200612 1.0000 120 chr3L:15099713-15099833 1.0000 120 chrX:13625474-13625594 1.0000 120 chr2R:9437382-9437502 1.0000 120 chr2L:19311588-19311708 1.0000 120 chr3R:14743574-14743694 1.0000 120 chr2R:18648449-18648569 1.0000 120 chr2L:5740913-5741033 1.0000 120 chr3R:14742264-14742384 1.0000 120 chrX:8512400-8512520 1.0000 120 chr3L:22820290-22820410 1.0000 120 chr2R:11609600-11609720 1.0000 120 chr3R:7224161-7224281 1.0000 120 chr3R:31504991-31505111 1.0000 120 chr3L:11289417-11289537 1.0000 120 chr3R:28325597-28325717 1.0000 120 chr3L:16208194-16208314 1.0000 120 chr3R:21604676-21604796 1.0000 120 chr2R:8325507-8325627 1.0000 120 chr3L:16168614-16168734 1.0000 120 chr3L:16214969-16215089 1.0000 120 chr3R:21237234-21237354 1.0000 120 chr3L:13218422-13218542 1.0000 120 chrX:11998407-11998527 1.0000 120 chr3L:8460566-8460686 1.0000 120 chr2L:2168959-2169079 1.0000 120 chr3R:21694719-21694839 1.0000 120 chr3L:21893869-21893989 1.0000 120 chr2R:7204502-7204622 1.0000 120 chr2R:8180475-8180595 1.0000 120 chr2R:10601944-10602064 1.0000 120 chr2R:22099376-22099496 1.0000 120 chr2R:9180365-9180485 1.0000 120 chr3L:15105687-15105807 1.0000 120 chr3L:20572810-20572930 1.0000 120 chr3R:9964770-9964890 1.0000 120 chr3R:21945892-21946012 1.0000 120 chr2R:7056847-7056967 1.0000 120 chr3R:20774242-20774362 1.0000 120 chr2R:17857311-17857431 1.0000 120 chr2L:17468599-17468719 1.0000 120 chr3R:23026810-23026930 1.0000 120 chr2L:3353059-3353179 1.0000 120 chr3R:12288769-12288889 1.0000 120 chr2L:5259248-5259368 1.0000 120 chr3L:16024421-16024541 1.0000 120 chr3L:15953008-15953128 1.0000 120 chr2L:848078-848198 1.0000 120 chr3L:4490999-4491119 1.0000 120 chr3L:17564798-17564918 1.0000 120 chrX:18258484-18258604 1.0000 120 chr3R:21970702-21970822 1.0000 120 chr2R:6547552-6547672 1.0000 120 chrX:3291355-3291475 1.0000 120 chr2R:6035339-6035459 1.0000 120 chr2R:5999538-5999658 1.0000 120 chrX:18356278-18356398 1.0000 120 chr2R:22163256-22163376 1.0000 120 chr3L:10778047-10778167 1.0000 120 chr3L:10418553-10418673 1.0000 120 chr3L:21104747-21104867 1.0000 120 chr3L:21052334-21052454 1.0000 120 chr2R:6522501-6522621 1.0000 120 chr3R:19312552-19312672 1.0000 120 chr3R:19276291-19276411 1.0000 120 chr2L:9225520-9225640 1.0000 120 chr3R:6923318-6923438 1.0000 120 chr3L:16209833-16209953 1.0000 120 chr3L:4619624-4619744 1.0000 120 chr3L:6364073-6364193 1.0000 120 chrX:1809881-1810001 1.0000 120 chr2R:11607295-11607415 1.0000 120 chrX:2287184-2287304 1.0000 120 chr2R:14010410-14010530 1.0000 120 chr2L:11032648-11032768 1.0000 120 chr3L:10716981-10717101 1.0000 120 chr2R:14911288-14911408 1.0000 120 chr3R:23878097-23878217 1.0000 120 chr2R:8953943-8954063 1.0000 120 chr3L:10390010-10390130 1.0000 120 chr2R:6108667-6108787 1.0000 120 chrX:1614578-1614698 1.0000 120 chr2R:20187493-20187613 1.0000 120 chr3L:493625-493745 1.0000 120 chrX:1308603-1308723 1.0000 120 chr2L:7051903-7052023 1.0000 120 chr2L:7451120-7451240 1.0000 120 chr3R:23325851-23325971 1.0000 120 chr2R:18195165-18195285 1.0000 120 chr3R:7995932-7996052 1.0000 120 chr2R:11596932-11597052 1.0000 120 chr3L:17596283-17596403 1.0000 120 chr2R:6235492-6235612 1.0000 120 chr2L:6463585-6463705 1.0000 120 chrX:18551947-18552067 1.0000 120 chr3R:6141870-6141990 1.0000 120 chr3R:28891769-28891889 1.0000 120 chr2R:5716244-5716364 1.0000 120 chrX:18956733-18956853 1.0000 120 chr3R:28851636-28851756 1.0000 120 chr3R:27693034-27693154 1.0000 120 chr3R:21934226-21934346 1.0000 120 chr2R:7195065-7195185 1.0000 120 chr3R:16216966-16217086 1.0000 120 chr2R:16217120-16217240 1.0000 120 chr2R:23982216-23982336 1.0000 120 chr2L:2425815-2425935 1.0000 120 chr3R:5519936-5520056 1.0000 120 chr2L:21015652-21015772 1.0000 120 chr2R:6548694-6548814 1.0000 120 chr3R:21892580-21892700 1.0000 120 chr3L:16182791-16182911 1.0000 120 chr3L:20734014-20734134 1.0000 120 chr3R:19254109-19254229 1.0000 120 chrX:1551665-1551785 1.0000 120 chr2R:13955815-13955935 1.0000 120 chrX:8178589-8178709 1.0000 120 chr2R:18589915-18590035 1.0000 120 chr2R:11365255-11365375 1.0000 120 chr3R:21922285-21922405 1.0000 120 chr3L:4508406-4508526 1.0000 120 chrX:10923879-10923999 1.0000 120 chr3L:8822999-8823119 1.0000 120 chr3L:2568376-2568496 1.0000 120 chr2R:8598738-8598858 1.0000 120 chr2L:18481925-18482045 1.0000 120 chr2R:24291380-24291500 1.0000 120 chr3L:11561049-11561169 1.0000 120 chrX:18265199-18265319 1.0000 120 chr2L:11024417-11024537 1.0000 120 chr2R:20173666-20173786 1.0000 120 chr3L:16941454-16941574 1.0000 120 chr2L:12610002-12610122 1.0000 120 chr3L:10944626-10944746 1.0000 120 chr2L:5232297-5232417 1.0000 120 chrX:21123661-21123781 1.0000 120 chr3L:21906624-21906744 1.0000 120 chr3R:11945955-11946075 1.0000 120 chr2L:4581178-4581298 1.0000 120 chr3L:6868199-6868319 1.0000 120 chr2R:22680217-22680337 1.0000 120 chr3R:30095647-30095767 1.0000 120 chrX:18797739-18797859 1.0000 120 chr3R:16019577-16019697 1.0000 120 chr3L:15214522-15214642 1.0000 120 chr3L:7137797-7137917 1.0000 120 chr2L:7945506-7945626 1.0000 120 chr3L:6076583-6076703 1.0000 120 chr2L:11399908-11400028 1.0000 120 chrX:18865226-18865346 1.0000 120 chr3L:21889712-21889832 1.0000 120 chr2R:6159016-6159136 1.0000 120 chr2L:13777306-13777426 1.0000 120 chr3L:8450897-8451017 1.0000 120 chr2L:13272537-13272657 1.0000 120 chr2R:6599725-6599845 1.0000 120 chrX:19248733-19248853 1.0000 120 chr2L:5332685-5332805 1.0000 120 chr2L:11069089-11069209 1.0000 120 chr3R:29377488-29377608 1.0000 120 chr2L:7050625-7050745 1.0000 120 chr2L:15406083-15406203 1.0000 120 chr2R:12732445-12732565 1.0000 120 chrX:18675396-18675516 1.0000 120 chr3L:22742280-22742400 1.0000 120 chr3R:21949283-21949403 1.0000 120 chr3R:28540773-28540893 1.0000 120 chr3L:1381090-1381210 1.0000 120 chr2R:7206545-7206665 1.0000 120 chr3R:17709890-17710010 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG13204/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG13204.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.208 C 0.286 G 0.289 T 0.217 Background letter frequencies (from file dataset with add-one prior applied): A 0.208 C 0.286 G 0.289 T 0.217 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTGTTGTT MEME-1 width = 8 sites = 59 llr = 500 E-value = 3.6e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGTTGTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 3::31:2: probability G ::8::8:: matrix T 7a27928a bits 2.3 * * 2.0 * * 1.8 * * * 1.6 * * ** Relative 1.4 * * ** Entropy 1.1 ***** ** (12.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGTTGTT consensus C TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTGTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:8450897-8451017 11 8.72e-06 Tttgttattg ttgttgtt gttgttgttA chr2R:6159016-6159136 54 8.72e-06 GTAACGAAAA TTGTTGTT GCAACCAGAC chr2L:11399908-11400028 111 8.72e-06 TTAACCGCTG TTGTTGTT GG chr3L:7137797-7137917 22 8.72e-06 GTTTTTCTGT TTGTTGTT GGTGCTGCAA chr2R:8598738-8598858 61 8.72e-06 TGTGTTCTGG TTGTTGTT ATTGTTGCGG chr3L:4508406-4508526 85 8.72e-06 gctgctgcgg ttgttgtt gctgctgctg chr2L:11032648-11032768 80 8.72e-06 GCTCCCTGCG TTGTTGTT GCCATTGATT chr3L:10778047-10778167 105 8.72e-06 AGCGCTGCCT TTGTTGTT GTCGCTGC chr3R:21970702-21970822 32 8.72e-06 GAATTCACtg ttgttgtt gtactgtgcg chr2L:3353059-3353179 27 8.72e-06 gctgttgttg ttgttgtt gctgctgctg chr3L:20572810-20572930 29 8.72e-06 gctgctgctg ttgttgtt gGCCGGTGTC chr3R:28325597-28325717 101 8.72e-06 gttctgtgcg ttgttgtt ttggctggca chr3R:27685292-27685412 61 8.72e-06 ACTTTTGTTA TTGTTGTT TGTTGCCTTT chr2L:13923701-13923821 68 8.72e-06 gttgtttctg ttgttgtt gttgtgcggt chr2R:8181349-8181469 43 8.72e-06 gctgctgctg ttgttgtt gctgctgttg chr2R:15482314-15482434 62 8.72e-06 gttgcttctg ttgttgtt gttgGGCGCA chr3L:16189197-16189317 105 8.72e-06 GCGGATCCAA TTGTTGTT GCGCCGCA chr3R:16019577-16019697 34 1.53e-05 CCGAGCCTTC TTTTTGTT TTTGGCGTAC chr3L:16209833-16209953 32 1.53e-05 ttattttttt tttttgtt gtatttCGTT chr2L:533813-533933 27 1.53e-05 TCCCTGTATG TTTTTGTT GTGTCGCTTA chr3L:6868199-6868319 94 3.83e-05 gcagttgctg ttgctgtt gctgctgctg chr3L:10944626-10944746 52 3.83e-05 ctgcatgttg ttgctgtt gcACCGGAAG chr2R:6548694-6548814 58 3.83e-05 CTTCGAACTG CTGTTGTT TCAGTTGTTG chr2L:21015652-21015772 59 3.83e-05 TGCTTTGTTG CTGTTGTT GCCTGCCGAT chr3L:21052334-21052454 107 3.83e-05 CTTGCAGCAG TTGCTGTT TCTGAT chr3L:18058279-18058399 8 3.83e-05 GCTGCTG CTGTTGTT GGTGTTGCTG chrX:18257001-18257121 6 4.48e-05 GCGGA TTGTTTTT TATTGTTTAT chr2L:15406083-15406203 23 7.36e-05 TCGCCTGCCT TTGTTGCT GGCTGGATTT chr2R:18195165-18195285 38 7.36e-05 TTTAGTCATA CTTTTGTT TCAGCCCGCT chr3R:7224161-7224281 5 7.36e-05 CCTG CTTTTGTT TTACTTTGTA chr3R:14743574-14743694 24 7.36e-05 CAGCGCTCTC CTTTTGTT GCCGCCCGCT chr3R:14432138-14432258 70 7.36e-05 GGCTTAGGTG TTGTTGCT GCAGTTGTTG chr2R:13955815-13955935 17 8.87e-05 gctgcagcgg ctgctgtt tgctgcgctt chr2R:6035339-6035459 85 8.87e-05 GGCCAAGCCG CTGCTGTT GGATGCTGCT chr3L:11289417-11289537 22 8.87e-05 gatgctgctg ctgctgtt ggtgGCCAGC chr3L:21651573-21651693 72 8.87e-05 CCCTGGTCCC CTGCTGTT TTGCTCCGCT chr2L:11014360-11014480 70 8.87e-05 gttcctgctc ctgctgtt gctcccgttg chr3L:2566205-2566325 27 8.87e-05 GCGAATTGCG CTGCTGTT GCTGCGGCGT chr3L:17400597-17400717 75 8.87e-05 GACCTTGCGG CTGCTGTT GGGCGTCGTG chrX:21123661-21123781 43 9.36e-05 GACGATCGTT TTTTTTTT CTTCAACGTC chr2L:5259248-5259368 50 9.36e-05 ATTTTATTTA TTTTTTTT CCCCCCAGCT chr2R:10601944-10602064 103 9.36e-05 TCTGCTGATT TTTTTTTT TGTACCAGAG chr2L:11024417-11024537 59 1.11e-04 AAACTGCTGT CTGTTTTT CTGTCTGCGG chr3R:26064811-26064931 97 1.11e-04 TACCCCCGTT TTGCTTTT GGTTTTCGTA chr2R:23565713-23565833 6 1.37e-04 GGCCT TTGTTATT GTCTGTGGCT chr2L:11059341-11059461 106 1.37e-04 GGTCTGTTAT TTTTTGCT CGTATAT chr2R:6235492-6235612 40 1.79e-04 AGGCGGCAGC TTGCTGCT GAGCGAATCC chr3R:20774242-20774362 113 1.79e-04 AGCTGCACGG CTGTTGCT chr3L:1381090-1381210 92 2.01e-04 GCGTGGGTCG TTGTTTCT CGGTTTCTCG chr3L:16941454-16941574 7 2.01e-04 TATGTT TTTCTTTT ACGCATATTT chr3R:6923318-6923438 32 2.01e-04 TCGCCGTCTC TTTCTTTT TATCTCATCC chr3L:21889712-21889832 76 2.95e-04 CAGTTGCAAC TTTCTGCT GCCTGTCTTT chrX:18265199-18265319 61 2.95e-04 CGGTTGCCGG TTGCCGTT CGCTGGTTAG chr3L:17596283-17596403 31 2.95e-04 TGTCAATAGA CTGTTATT TGTCTGCCTC chr3R:23026810-23026930 78 2.95e-04 TCTCTGTCCG CTTTTGCT TCGCCTTTGG chr2R:9437382-9437502 99 2.95e-04 CCAGTTGCGC TTGCCGTT CTTGGCCTCG chr3L:9378533-9378653 89 2.95e-04 TTCCTGACCG TTGCCGTT GCTCTCGGCG chr3L:10913668-10913788 84 3.15e-04 CAAAGCGCAG CTGCTGCT GCATTAATTA chr3R:28851636-28851756 104 3.30e-04 GCTCGCTCGT TTGTCTTT CAACAAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTGTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:8450897-8451017 8.7e-06 10_[+1]_102 chr2R:6159016-6159136 8.7e-06 53_[+1]_59 chr2L:11399908-11400028 8.7e-06 110_[+1]_2 chr3L:7137797-7137917 8.7e-06 21_[+1]_91 chr2R:8598738-8598858 8.7e-06 60_[+1]_52 chr3L:4508406-4508526 8.7e-06 84_[+1]_28 chr2L:11032648-11032768 8.7e-06 79_[+1]_33 chr3L:10778047-10778167 8.7e-06 104_[+1]_8 chr3R:21970702-21970822 8.7e-06 31_[+1]_81 chr2L:3353059-3353179 8.7e-06 26_[+1]_86 chr3L:20572810-20572930 8.7e-06 28_[+1]_84 chr3R:28325597-28325717 8.7e-06 100_[+1]_12 chr3R:27685292-27685412 8.7e-06 60_[+1]_52 chr2L:13923701-13923821 8.7e-06 67_[+1]_45 chr2R:8181349-8181469 8.7e-06 42_[+1]_70 chr2R:15482314-15482434 8.7e-06 61_[+1]_51 chr3L:16189197-16189317 8.7e-06 104_[+1]_8 chr3R:16019577-16019697 1.5e-05 33_[+1]_79 chr3L:16209833-16209953 1.5e-05 31_[+1]_81 chr2L:533813-533933 1.5e-05 26_[+1]_86 chr3L:6868199-6868319 3.8e-05 93_[+1]_19 chr3L:10944626-10944746 3.8e-05 51_[+1]_61 chr2R:6548694-6548814 3.8e-05 57_[+1]_55 chr2L:21015652-21015772 3.8e-05 58_[+1]_54 chr3L:21052334-21052454 3.8e-05 106_[+1]_6 chr3L:18058279-18058399 3.8e-05 7_[+1]_105 chrX:18257001-18257121 4.5e-05 5_[+1]_107 chr2L:15406083-15406203 7.4e-05 22_[+1]_90 chr2R:18195165-18195285 7.4e-05 37_[+1]_75 chr3R:7224161-7224281 7.4e-05 4_[+1]_108 chr3R:14743574-14743694 7.4e-05 23_[+1]_89 chr3R:14432138-14432258 7.4e-05 69_[+1]_43 chr2R:13955815-13955935 8.9e-05 16_[+1]_96 chr2R:6035339-6035459 8.9e-05 84_[+1]_28 chr3L:11289417-11289537 8.9e-05 21_[+1]_91 chr3L:21651573-21651693 8.9e-05 71_[+1]_41 chr2L:11014360-11014480 8.9e-05 69_[+1]_43 chr3L:2566205-2566325 8.9e-05 26_[+1]_86 chr3L:17400597-17400717 8.9e-05 74_[+1]_38 chrX:21123661-21123781 9.4e-05 42_[+1]_70 chr2L:5259248-5259368 9.4e-05 49_[+1]_63 chr2R:10601944-10602064 9.4e-05 102_[+1]_10 chr2L:11024417-11024537 0.00011 58_[+1]_54 chr3R:26064811-26064931 0.00011 96_[+1]_16 chr2R:23565713-23565833 0.00014 5_[+1]_107 chr2L:11059341-11059461 0.00014 105_[+1]_7 chr2R:6235492-6235612 0.00018 39_[+1]_73 chr3R:20774242-20774362 0.00018 112_[+1] chr3L:1381090-1381210 0.0002 91_[+1]_21 chr3L:16941454-16941574 0.0002 6_[+1]_106 chr3R:6923318-6923438 0.0002 31_[+1]_81 chr3L:21889712-21889832 0.00029 75_[+1]_37 chrX:18265199-18265319 0.00029 60_[+1]_52 chr3L:17596283-17596403 0.00029 30_[+1]_82 chr3R:23026810-23026930 0.00029 77_[+1]_35 chr2R:9437382-9437502 0.00029 98_[+1]_14 chr3L:9378533-9378653 0.00029 88_[+1]_24 chr3L:10913668-10913788 0.00031 83_[+1]_29 chr3R:28851636-28851756 0.00033 103_[+1]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTGTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGTTGTT width=8 seqs=59 chr3L:8450897-8451017 ( 11) TTGTTGTT 1 chr2R:6159016-6159136 ( 54) TTGTTGTT 1 chr2L:11399908-11400028 ( 111) TTGTTGTT 1 chr3L:7137797-7137917 ( 22) TTGTTGTT 1 chr2R:8598738-8598858 ( 61) TTGTTGTT 1 chr3L:4508406-4508526 ( 85) TTGTTGTT 1 chr2L:11032648-11032768 ( 80) TTGTTGTT 1 chr3L:10778047-10778167 ( 105) TTGTTGTT 1 chr3R:21970702-21970822 ( 32) TTGTTGTT 1 chr2L:3353059-3353179 ( 27) TTGTTGTT 1 chr3L:20572810-20572930 ( 29) TTGTTGTT 1 chr3R:28325597-28325717 ( 101) TTGTTGTT 1 chr3R:27685292-27685412 ( 61) TTGTTGTT 1 chr2L:13923701-13923821 ( 68) TTGTTGTT 1 chr2R:8181349-8181469 ( 43) TTGTTGTT 1 chr2R:15482314-15482434 ( 62) TTGTTGTT 1 chr3L:16189197-16189317 ( 105) TTGTTGTT 1 chr3R:16019577-16019697 ( 34) TTTTTGTT 1 chr3L:16209833-16209953 ( 32) TTTTTGTT 1 chr2L:533813-533933 ( 27) TTTTTGTT 1 chr3L:6868199-6868319 ( 94) TTGCTGTT 1 chr3L:10944626-10944746 ( 52) TTGCTGTT 1 chr2R:6548694-6548814 ( 58) CTGTTGTT 1 chr2L:21015652-21015772 ( 59) CTGTTGTT 1 chr3L:21052334-21052454 ( 107) TTGCTGTT 1 chr3L:18058279-18058399 ( 8) CTGTTGTT 1 chrX:18257001-18257121 ( 6) TTGTTTTT 1 chr2L:15406083-15406203 ( 23) TTGTTGCT 1 chr2R:18195165-18195285 ( 38) CTTTTGTT 1 chr3R:7224161-7224281 ( 5) CTTTTGTT 1 chr3R:14743574-14743694 ( 24) CTTTTGTT 1 chr3R:14432138-14432258 ( 70) TTGTTGCT 1 chr2R:13955815-13955935 ( 17) CTGCTGTT 1 chr2R:6035339-6035459 ( 85) CTGCTGTT 1 chr3L:11289417-11289537 ( 22) CTGCTGTT 1 chr3L:21651573-21651693 ( 72) CTGCTGTT 1 chr2L:11014360-11014480 ( 70) CTGCTGTT 1 chr3L:2566205-2566325 ( 27) CTGCTGTT 1 chr3L:17400597-17400717 ( 75) CTGCTGTT 1 chrX:21123661-21123781 ( 43) TTTTTTTT 1 chr2L:5259248-5259368 ( 50) TTTTTTTT 1 chr2R:10601944-10602064 ( 103) TTTTTTTT 1 chr2L:11024417-11024537 ( 59) CTGTTTTT 1 chr3R:26064811-26064931 ( 97) TTGCTTTT 1 chr2R:23565713-23565833 ( 6) TTGTTATT 1 chr2L:11059341-11059461 ( 106) TTTTTGCT 1 chr2R:6235492-6235612 ( 40) TTGCTGCT 1 chr3R:20774242-20774362 ( 113) CTGTTGCT 1 chr3L:1381090-1381210 ( 92) TTGTTTCT 1 chr3L:16941454-16941574 ( 7) TTTCTTTT 1 chr3R:6923318-6923438 ( 32) TTTCTTTT 1 chr3L:21889712-21889832 ( 76) TTTCTGCT 1 chrX:18265199-18265319 ( 61) TTGCCGTT 1 chr3L:17596283-17596403 ( 31) CTGTTATT 1 chr3R:23026810-23026930 ( 78) CTTTTGCT 1 chr2R:9437382-9437502 ( 99) TTGCCGTT 1 chr3L:9378533-9378653 ( 89) TTGCCGTT 1 chr3L:10913668-10913788 ( 84) CTGCTGCT 1 chr3R:28851636-28851756 ( 104) TTGTCTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTGTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1641 E= 3.6e-019 -1253 9 -1253 168 -1253 -1253 -1253 220 -1253 -1253 140 13 -1253 17 -1253 164 -1253 -208 -1253 210 -262 -1253 146 -36 -1253 -91 -1253 196 -1253 -1253 -1253 220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTGTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 3.6e-019 0.000000 0.305085 0.000000 0.694915 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.762712 0.237288 0.000000 0.322034 0.000000 0.677966 0.000000 0.067797 0.000000 0.932203 0.033898 0.000000 0.796610 0.169492 0.000000 0.152542 0.000000 0.847458 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTGTT MEME-1 regular expression -------------------------------------------------------------------------------- [TC]T[GT][TC]TGTT -------------------------------------------------------------------------------- Time 7.36 secs. ******************************************************************************** ******************************************************************************** MOTIF AACAAMAA MEME-2 width = 8 sites = 50 llr = 434 E-value = 1.6e-015 ******************************************************************************** -------------------------------------------------------------------------------- Motif AACAAMAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 973a84a9 pos.-specific C 1:7:15:: probability G :3::11:1 matrix T :::::::: bits 2.3 * * 2.0 * * 1.8 * * ** 1.6 * * ** Relative 1.4 ** ** ** Entropy 1.1 ***** ** (12.5 bits) 0.9 ***** ** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AACAACAA consensus GA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAMAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:22742280-22742400 99 1.14e-05 CTCCAGCAAA AACAACAA CGGCGTGTGT chrX:18865226-18865346 79 1.14e-05 CGGTAACAAC AACAACAA TGGAGGAGGC chr3L:7137797-7137917 64 1.14e-05 AGCCATAAAT AACAACAA CCACAGCAGC chr3R:11945955-11946075 38 1.14e-05 GTAGGCCAAG AACAACAA AGGCAGCTGG chrX:18551947-18552067 35 1.14e-05 CCGCAGCACC AACAACAA ACATTGTTAA chr2R:11596932-11597052 109 1.14e-05 CGGAGCTGGc aacaacaa cgac chrX:3291355-3291475 7 1.14e-05 agcgat aacaacaa caTATAGATC chr3L:16024421-16024541 46 1.14e-05 CAGCAGCAGC AACAACAA AGTGCAGGCC chrX:11998407-11998527 111 1.14e-05 aaaaaaaaaa aacaaaaa ca chr3R:14742264-14742384 63 1.14e-05 ccataacaac aacaacaa caacaGTAAA chrX:13625474-13625594 87 1.14e-05 TGCAGGCAAC AACAACAA GTTACGCGGC chrX:13305382-13305502 80 1.14e-05 caattggaaa aacaacaa cgacgacaac chr3R:12452057-12452177 51 1.14e-05 CCGGTTGCAC AACAACAA GCCGAAAAGT chr2L:18481925-18482045 68 1.98e-05 TGGTTGGCAA AAAAAAAA AGGGAAAAAA chr3R:27693034-27693154 14 1.98e-05 aaaaaaaaaa aaaaaaaa gaaaaaagca chr3L:10390010-10390130 4 1.98e-05 aga aaaaaaaa gaagcgacaa chr2R:8953943-8954063 60 1.98e-05 CAGTCGGTGC AAAAAAAA GCAGGCCTAA chr3L:4619624-4619744 56 1.98e-05 GCGAGAGCGA AAAAAAAA CCACCACCGA chr3L:10418553-10418673 45 1.98e-05 aaaaaagaag aaaaaaaa tCACTGTAGT chr3R:21237234-21237354 45 1.98e-05 GAATGACTGA AAAAAAAA AACCAGTTCC chr3L:11022097-11022217 68 1.98e-05 AAGAAAAGAA AAAAAAAA AACATCACTG chr3R:17709890-17710010 21 3.57e-05 GAGCAGGACG AGCAAAAA CCAGGCATGC chr2L:11399908-11400028 62 3.57e-05 CCGCCACCGC AGCAACAA GTAGACCGCT chr2R:11607295-11607415 104 3.57e-05 cagcagcagc agcaacaA GGAGGAAAG chr2R:22163256-22163376 13 3.57e-05 tcgctgcagc agcaacaa cagcagcatc chr3L:17491823-17491943 37 3.57e-05 TGCAGAGTCA AGCAAAAA GTAAAAGAGA chr3R:5213465-5213585 37 3.57e-05 CATAAACGGC AGCAAAAA GCACACAAAA chr3R:5615660-5615780 64 3.57e-05 GAGCGGCCAC AGCAACAA GAGCGGCGGA chr2R:5999538-5999658 37 4.24e-05 TCCATTTCAG AACAAGAA AATATAGGCA chr2L:13272537-13272657 24 6.98e-05 gcacagcagc aacagcaa cagtcaccgc chrX:18550902-18551022 111 6.98e-05 taataacagc aacagcaa ca chr2L:4822414-4822534 61 7.47e-05 CGTTAACGGT AAAAAGAA GAAGAAGACG chr3L:2568376-2568496 108 9.06e-05 TGATTAAGTA AACAAAAG CAGCC chr3R:9964770-9964890 6 9.06e-05 cagaC AACAACAG CCCACAGCCG chr2L:19311588-19311708 13 9.06e-05 AGCGCCTTGC AACAAAAG TTGCAGTGAC chrX:18265199-18265319 12 1.27e-04 CGGCGTCGCG AACACAAA TTATTAGCAG chr2L:9225520-9225640 34 1.27e-04 ACAACAACGC AACACAAA TACCAACACA chr3L:15105687-15105807 109 1.27e-04 cagcaaaggc aaaagcaa cagc chr2R:7174419-7174539 15 1.27e-04 TCTCACTGTC AACACCAA GAGGTATGCA chr2R:7905547-7905667 38 1.27e-04 GGGGGAGCGC AGCAAGAA GTGCTCGATT chr2L:533813-533933 69 1.27e-04 TCGCAGCTCC AGCaagaa gaagagaaga chr2R:6195844-6195964 87 1.27e-04 GATCGAAAAG AAAAGAAA CGGATGCGAT chr3R:21934226-21934346 106 1.43e-04 acagcagcgg caCAAAAA ACGCGCA chr3R:21945892-21946012 15 1.43e-04 CTTCAAGATG CACAAAAA TGCATTCTTT chr3R:21722838-21722958 84 1.43e-04 cgaggCTAGC CACAACAA GGCGTGAATG chr2L:2425815-2425935 90 1.77e-04 ctgcagcagc agcagcaa catgcaacaT chr3R:20310261-20310381 72 1.77e-04 AACAGTGCCA AGCAGCAA GGTGCGGCGG chr2R:14911288-14911408 109 1.95e-04 GAAGGAGCAA AGAAAGAA TAAG chr3R:7995932-7996052 98 2.38e-04 ACAGGTTCTG AGCAACAG GTTGTCGATG chr2R:18195165-18195285 83 3.39e-04 CCCCTCTACA AGAAACAG CTACCGCCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAMAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:22742280-22742400 1.1e-05 98_[+2]_14 chrX:18865226-18865346 1.1e-05 78_[+2]_34 chr3L:7137797-7137917 1.1e-05 63_[+2]_49 chr3R:11945955-11946075 1.1e-05 37_[+2]_75 chrX:18551947-18552067 1.1e-05 34_[+2]_78 chr2R:11596932-11597052 1.1e-05 108_[+2]_4 chrX:3291355-3291475 1.1e-05 6_[+2]_106 chr3L:16024421-16024541 1.1e-05 45_[+2]_67 chrX:11998407-11998527 1.1e-05 110_[+2]_2 chr3R:14742264-14742384 1.1e-05 62_[+2]_50 chrX:13625474-13625594 1.1e-05 86_[+2]_26 chrX:13305382-13305502 1.1e-05 79_[+2]_33 chr3R:12452057-12452177 1.1e-05 50_[+2]_62 chr2L:18481925-18482045 2e-05 67_[+2]_45 chr3R:27693034-27693154 2e-05 13_[+2]_99 chr3L:10390010-10390130 2e-05 3_[+2]_109 chr2R:8953943-8954063 2e-05 59_[+2]_53 chr3L:4619624-4619744 2e-05 55_[+2]_57 chr3L:10418553-10418673 2e-05 44_[+2]_68 chr3R:21237234-21237354 2e-05 44_[+2]_68 chr3L:11022097-11022217 2e-05 67_[+2]_45 chr3R:17709890-17710010 3.6e-05 20_[+2]_92 chr2L:11399908-11400028 3.6e-05 61_[+2]_51 chr2R:11607295-11607415 3.6e-05 103_[+2]_9 chr2R:22163256-22163376 3.6e-05 12_[+2]_100 chr3L:17491823-17491943 3.6e-05 36_[+2]_76 chr3R:5213465-5213585 3.6e-05 36_[+2]_76 chr3R:5615660-5615780 3.6e-05 63_[+2]_49 chr2R:5999538-5999658 4.2e-05 36_[+2]_76 chr2L:13272537-13272657 7e-05 23_[+2]_89 chrX:18550902-18551022 7e-05 110_[+2]_2 chr2L:4822414-4822534 7.5e-05 60_[+2]_52 chr3L:2568376-2568496 9.1e-05 107_[+2]_5 chr3R:9964770-9964890 9.1e-05 5_[+2]_107 chr2L:19311588-19311708 9.1e-05 12_[+2]_100 chrX:18265199-18265319 0.00013 11_[+2]_101 chr2L:9225520-9225640 0.00013 33_[+2]_79 chr3L:15105687-15105807 0.00013 108_[+2]_4 chr2R:7174419-7174539 0.00013 14_[+2]_98 chr2R:7905547-7905667 0.00013 37_[+2]_75 chr2L:533813-533933 0.00013 68_[+2]_44 chr2R:6195844-6195964 0.00013 86_[+2]_26 chr3R:21934226-21934346 0.00014 105_[+2]_7 chr3R:21945892-21946012 0.00014 14_[+2]_98 chr3R:21722838-21722958 0.00014 83_[+2]_29 chr2L:2425815-2425935 0.00018 89_[+2]_23 chr3R:20310261-20310381 0.00018 71_[+2]_41 chr2R:14911288-14911408 0.00019 108_[+2]_4 chr3R:7995932-7996052 0.00024 97_[+2]_15 chr2R:18195165-18195285 0.00034 82_[+2]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAMAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AACAAMAA width=8 seqs=50 chr3L:22742280-22742400 ( 99) AACAACAA 1 chrX:18865226-18865346 ( 79) AACAACAA 1 chr3L:7137797-7137917 ( 64) AACAACAA 1 chr3R:11945955-11946075 ( 38) AACAACAA 1 chrX:18551947-18552067 ( 35) AACAACAA 1 chr2R:11596932-11597052 ( 109) AACAACAA 1 chrX:3291355-3291475 ( 7) AACAACAA 1 chr3L:16024421-16024541 ( 46) AACAACAA 1 chrX:11998407-11998527 ( 111) AACAAAAA 1 chr3R:14742264-14742384 ( 63) AACAACAA 1 chrX:13625474-13625594 ( 87) AACAACAA 1 chrX:13305382-13305502 ( 80) AACAACAA 1 chr3R:12452057-12452177 ( 51) AACAACAA 1 chr2L:18481925-18482045 ( 68) AAAAAAAA 1 chr3R:27693034-27693154 ( 14) AAAAAAAA 1 chr3L:10390010-10390130 ( 4) AAAAAAAA 1 chr2R:8953943-8954063 ( 60) AAAAAAAA 1 chr3L:4619624-4619744 ( 56) AAAAAAAA 1 chr3L:10418553-10418673 ( 45) AAAAAAAA 1 chr3R:21237234-21237354 ( 45) AAAAAAAA 1 chr3L:11022097-11022217 ( 68) AAAAAAAA 1 chr3R:17709890-17710010 ( 21) AGCAAAAA 1 chr2L:11399908-11400028 ( 62) AGCAACAA 1 chr2R:11607295-11607415 ( 104) AGCAACAA 1 chr2R:22163256-22163376 ( 13) AGCAACAA 1 chr3L:17491823-17491943 ( 37) AGCAAAAA 1 chr3R:5213465-5213585 ( 37) AGCAAAAA 1 chr3R:5615660-5615780 ( 64) AGCAACAA 1 chr2R:5999538-5999658 ( 37) AACAAGAA 1 chr2L:13272537-13272657 ( 24) AACAGCAA 1 chrX:18550902-18551022 ( 111) AACAGCAA 1 chr2L:4822414-4822534 ( 61) AAAAAGAA 1 chr3L:2568376-2568496 ( 108) AACAAAAG 1 chr3R:9964770-9964890 ( 6) AACAACAG 1 chr2L:19311588-19311708 ( 13) AACAAAAG 1 chrX:18265199-18265319 ( 12) AACACAAA 1 chr2L:9225520-9225640 ( 34) AACACAAA 1 chr3L:15105687-15105807 ( 109) AAAAGCAA 1 chr2R:7174419-7174539 ( 15) AACACCAA 1 chr2R:7905547-7905667 ( 38) AGCAAGAA 1 chr2L:533813-533933 ( 69) AGCAAGAA 1 chr2R:6195844-6195964 ( 87) AAAAGAAA 1 chr3R:21934226-21934346 ( 106) CACAAAAA 1 chr3R:21945892-21946012 ( 15) CACAAAAA 1 chr3R:21722838-21722958 ( 84) CACAACAA 1 chr2L:2425815-2425935 ( 90) AGCAGCAA 1 chr3R:20310261-20310381 ( 72) AGCAGCAA 1 chr2R:14911288-14911408 ( 109) AGAAAGAA 1 chr3R:7995932-7996052 ( 98) AGCAACAG 1 chr2R:18195165-18195285 ( 83) AGAAACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAMAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2493 E= 1.6e-015 218 -225 -1229 -1229 179 -1229 -4 -1229 32 137 -1229 -1229 227 -1229 -1229 -1229 198 -225 -127 -1229 87 86 -153 -1229 227 -1229 -1229 -1229 211 -1229 -153 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAMAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 1.6e-015 0.940000 0.060000 0.000000 0.000000 0.720000 0.000000 0.280000 0.000000 0.260000 0.740000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.820000 0.060000 0.120000 0.000000 0.380000 0.520000 0.100000 0.000000 1.000000 0.000000 0.000000 0.000000 0.900000 0.000000 0.100000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AACAAMAA MEME-2 regular expression -------------------------------------------------------------------------------- A[AG][CA]AA[CA]AA -------------------------------------------------------------------------------- Time 13.54 secs. ******************************************************************************** ******************************************************************************** MOTIF GCWGCWGC MEME-3 width = 8 sites = 73 llr = 580 E-value = 6.6e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::4::4:: pos.-specific C :a1:a:1a probability G 9:1a::9: matrix T 1:4::6:: bits 2.3 2.0 1.8 * ** * 1.6 * ** * Relative 1.4 ** ** ** Entropy 1.1 ** ***** (11.5 bits) 0.9 ** ***** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCTGCTGC consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21949283-21949403 64 2.66e-05 GGCGGCGTTC GCTGCTGC AGCGTTTGCC chr3L:6868199-6868319 108 2.66e-05 tgttgctgct gctgctgc tgctg chr3L:10944626-10944746 15 2.66e-05 TCAGCAACAt gctgctgc tgttgctgca chr2R:8598738-8598858 110 2.66e-05 AGCGAGCgct gctgctgc tgc chr3L:4508406-4508526 96 2.66e-05 tgttgttgct gctgctgc tgcggcGACT chr2R:13955815-13955935 1 2.66e-05 . gctgctgc tgcagcggct chr2L:21015652-21015772 108 2.66e-05 CTGCAGTGTT GCTGCTGC TAGCC chr2L:6463585-6463705 57 2.66e-05 tgggTATGTG GCTGCTGC GCTATCTGAG chr3R:19276291-19276411 26 2.66e-05 TGCTGGCTCC GCTGCTGC CTGTTAATCT chr3L:10778047-10778167 78 2.66e-05 GGTTTGTTTG GCTGCTGC ATTTTTTGGA chr2L:3353059-3353179 8 2.66e-05 tgttgtt gctgctgc ggctgttgtt chr3L:20572810-20572930 19 2.66e-05 ttggcgttcg gctgctgc tgttgttgtt chr2R:8325507-8325627 106 2.66e-05 CCGGTCGGTC GCTGCTGC ATCTTCT chr3R:28325597-28325717 5 2.66e-05 tgct gctgctgc tgctgttgtt chr3L:11289417-11289537 3 2.66e-05 ct gctgctgc tgatgctgct chr2L:11014360-11014480 90 2.66e-05 tcccgttgct gctgctgc CCCACCCGTT chr3L:18058279-18058399 22 2.66e-05 TGTTGGTGTT GCTGCTGC TCGAGTTGCC chr2R:8181349-8181469 30 2.66e-05 GActgctgct gctgctgc tgctgttgtt chr2R:15482314-15482434 19 2.66e-05 ctgttgcgtc gctgctgc tgctgcgcat chr2R:7206545-7206665 89 5.21e-05 GAAGGGGGGA GCAGCTGC AGATGGCCCC chrX:18675396-18675516 77 5.21e-05 TTCTGGTTTG GCAGCTGC TTCTTGGGAA chr3R:21934226-21934346 60 5.21e-05 GTGGTTAAGT gcagctgc aactgcaacg chr2R:14911288-14911408 20 5.21e-05 GACAGCAGTT GCAGCTGC GCACCGAGCG chr3R:21694719-21694839 46 5.21e-05 GGGGGGCGGG GCAGCTGC AGCCCACACA chr2R:17440229-17440349 71 5.21e-05 GGCTTGCAGC GCAGCTGC ATCCGTTTCC chr2R:22302662-22302782 112 5.21e-05 TCACATACAT GCAGCTGC C chr2L:7050625-7050745 112 7.76e-05 TGCATTGGAA GCTGCAGC G chr2L:2425815-2425935 79 7.76e-05 CAATCGAGTT gctgcagc agcagcagca chr2R:16217120-16217240 23 7.76e-05 GTGGGTCACA GCTGCAGC TGTGGATCTG chr2R:11607295-11607415 90 7.76e-05 gcagaaactt gctgcagc agcagcagca chr2R:22163256-22163376 5 7.76e-05 gctc gctgcagc agcaacaaca chr2L:13272537-13272657 112 1.02e-04 agttgcaaca gcagcagc a chrX:18797739-18797859 87 1.02e-04 agcagcagca gcagcagc cgcaacaaga chr3R:21922285-21922405 9 1.02e-04 GACTGGTT GCAGCAGC GACTACGAAG chr2R:6108667-6108787 85 1.02e-04 accagcagca gcagcagc agTAGGCTGC chrX:1809881-1810001 70 1.02e-04 CGCGCAACAG GCAGCAGC ATCCGCCCGC chr3L:16024421-16024541 38 1.02e-04 ACCCTCATCA GCAGCAGC AACAACAAAG chr3R:14742264-14742384 100 1.02e-04 ACAAGAAGAA GCAGCAGC AGTAGCTTCC chr3L:15099713-15099833 24 1.02e-04 TAAATAAACG GCAGCAGC GACACACACT chr3L:9378533-9378653 23 1.02e-04 agcagcggca gcagcagc CTCATTGGAA chr2R:7905547-7905667 107 1.02e-04 GCcagtcgca gcagcagc agtatc chr2L:4822414-4822534 36 1.02e-04 CGCGTACAGA GCAGCAGC GCTCGGACGT chr3L:11022097-11022217 10 1.02e-04 acaacagca gcagcagc acagcagcaa chrX:18865226-18865346 103 1.37e-04 AGGCGGAGGA GCGGCTGC AGTCGGCGCT chr2L:12610002-12610122 2 1.37e-04 A GCGGCTGC ACATGCAAAG chrX:16621658-16621778 12 1.37e-04 GACGGCGGCA GCGGCTGC GCAACAGGTT chr3R:4462896-4463016 113 1.37e-04 TGGCAGCGCA GCGGCTGC chr3R:23026810-23026930 113 1.72e-04 ATGTGCTACC GCCGCTGC chr3L:22820290-22820410 103 1.72e-04 TTACCGCCGC GCCGCTGC TATTTGTGAA chr3L:6834981-6835101 105 1.72e-04 CGCCGTTTCT GCCGCTGC GGATGGTG chr3R:26064811-26064931 64 1.72e-04 GCTATTTGCT GCCGCTGC TTCTTTCACT chrX:16670797-16670917 86 1.72e-04 cattgctacc gccgctgc ctctgctact chr3R:28891769-28891889 56 2.06e-04 AGCGGTAGAG GCGGCAGC GCCGGAGGCA chr2R:6235492-6235612 32 2.06e-04 CTTAACGTAG GCGGCAGC TTGCTGCTGA chr3L:15105687-15105807 72 2.06e-04 CGGTCTGTGT gcggcagc ggtggcggcg chr2R:7174419-7174539 37 2.06e-04 TATGCAACAT GCGGCAGC GCGGAAGGAG chr2R:22680217-22680337 41 2.66e-04 CCGCTCCTGC GCTGCTCC ATTCCTCACC chrX:18551947-18552067 24 2.66e-04 GCAAACAGTA GCCGCAGC ACCAACAACA chr3L:16168614-16168734 62 2.66e-04 TGGCGGGGAT GCTGCTCC agctggagcg chr2R:9437382-9437502 70 2.66e-04 CCGCTGATGA GCTGCTCC GGCGTGTGCA chr2L:11059341-11059461 85 2.66e-04 ATCTCTGGCA GCCGCAGC TCAGGTCTGT chr3R:16085352-16085472 24 2.86e-04 CAGTGACCGC TCTGCTGC CTCTGCTGCC chr3L:22802083-22802203 67 2.86e-04 TCTCCTTGGC TCTGCTGC CTTTCGTTTT chr3R:21892580-21892700 14 3.11e-04 GTACCACCAT GCAGCTCC ACCGAAACCT chr2L:533813-533933 61 3.11e-04 AGGATCGATC GCAGCTCC AGCaagaaga chr2L:5465320-5465440 103 3.31e-04 GACAGTCCCT TCAGCTGC GAGGCGCTCC chr2L:848078-848198 75 3.75e-04 GACCGGCCGG TCTGCAGC GGATTCCAAT chr2L:8915880-8916000 11 3.75e-04 atcatcatca tcTGCAGC CGACGGCGGT chr2R:15908419-15908539 22 3.99e-04 AGAACCGAAA GCAGCACC ACTAGCGCAC chr3R:20310261-20310381 42 3.99e-04 GCGGTGGCCA GCAGCACC CCCATACGCA chr3L:2566205-2566325 35 4.53e-04 CGCTGCTGTT GCTGCGGC GTCTGTCCCG chr3R:29377488-29377608 94 4.87e-04 AACGGCAGTG GCAGCGGC AACGGCGGCT chr3L:10390010-10390130 61 4.87e-04 aactgcaacg gcagcggc tacaaactgc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21949283-21949403 2.7e-05 63_[+3]_49 chr3L:6868199-6868319 2.7e-05 107_[+3]_5 chr3L:10944626-10944746 2.7e-05 14_[+3]_98 chr2R:8598738-8598858 2.7e-05 109_[+3]_3 chr3L:4508406-4508526 2.7e-05 95_[+3]_17 chr2R:13955815-13955935 2.7e-05 [+3]_112 chr2L:21015652-21015772 2.7e-05 107_[+3]_5 chr2L:6463585-6463705 2.7e-05 56_[+3]_56 chr3R:19276291-19276411 2.7e-05 25_[+3]_87 chr3L:10778047-10778167 2.7e-05 77_[+3]_35 chr2L:3353059-3353179 2.7e-05 7_[+3]_105 chr3L:20572810-20572930 2.7e-05 18_[+3]_94 chr2R:8325507-8325627 2.7e-05 105_[+3]_7 chr3R:28325597-28325717 2.7e-05 4_[+3]_108 chr3L:11289417-11289537 2.7e-05 2_[+3]_110 chr2L:11014360-11014480 2.7e-05 89_[+3]_23 chr3L:18058279-18058399 2.7e-05 21_[+3]_91 chr2R:8181349-8181469 2.7e-05 29_[+3]_83 chr2R:15482314-15482434 2.7e-05 18_[+3]_94 chr2R:7206545-7206665 5.2e-05 88_[+3]_24 chrX:18675396-18675516 5.2e-05 76_[+3]_36 chr3R:21934226-21934346 5.2e-05 59_[+3]_53 chr2R:14911288-14911408 5.2e-05 19_[+3]_93 chr3R:21694719-21694839 5.2e-05 45_[+3]_67 chr2R:17440229-17440349 5.2e-05 70_[+3]_42 chr2R:22302662-22302782 5.2e-05 111_[+3]_1 chr2L:7050625-7050745 7.8e-05 111_[+3]_1 chr2L:2425815-2425935 7.8e-05 78_[+3]_34 chr2R:16217120-16217240 7.8e-05 22_[+3]_90 chr2R:11607295-11607415 7.8e-05 89_[+3]_23 chr2R:22163256-22163376 7.8e-05 4_[+3]_108 chr2L:13272537-13272657 0.0001 111_[+3]_1 chrX:18797739-18797859 0.0001 86_[+3]_26 chr3R:21922285-21922405 0.0001 8_[+3]_104 chr2R:6108667-6108787 0.0001 84_[+3]_28 chrX:1809881-1810001 0.0001 69_[+3]_43 chr3L:16024421-16024541 0.0001 37_[+3]_75 chr3R:14742264-14742384 0.0001 99_[+3]_13 chr3L:15099713-15099833 0.0001 23_[+3]_89 chr3L:9378533-9378653 0.0001 22_[+3]_90 chr2R:7905547-7905667 0.0001 106_[+3]_6 chr2L:4822414-4822534 0.0001 35_[+3]_77 chr3L:11022097-11022217 0.0001 9_[+3]_103 chrX:18865226-18865346 0.00014 102_[+3]_10 chr2L:12610002-12610122 0.00014 1_[+3]_111 chrX:16621658-16621778 0.00014 11_[+3]_101 chr3R:4462896-4463016 0.00014 112_[+3] chr3R:23026810-23026930 0.00017 112_[+3] chr3L:22820290-22820410 0.00017 102_[+3]_10 chr3L:6834981-6835101 0.00017 104_[+3]_8 chr3R:26064811-26064931 0.00017 63_[+3]_49 chrX:16670797-16670917 0.00017 85_[+3]_27 chr3R:28891769-28891889 0.00021 55_[+3]_57 chr2R:6235492-6235612 0.00021 31_[+3]_81 chr3L:15105687-15105807 0.00021 71_[+3]_41 chr2R:7174419-7174539 0.00021 36_[+3]_76 chr2R:22680217-22680337 0.00027 40_[+3]_72 chrX:18551947-18552067 0.00027 23_[+3]_89 chr3L:16168614-16168734 0.00027 61_[+3]_51 chr2R:9437382-9437502 0.00027 69_[+3]_43 chr2L:11059341-11059461 0.00027 84_[+3]_28 chr3R:16085352-16085472 0.00029 23_[+3]_89 chr3L:22802083-22802203 0.00029 66_[+3]_46 chr3R:21892580-21892700 0.00031 13_[+3]_99 chr2L:533813-533933 0.00031 60_[+3]_52 chr2L:5465320-5465440 0.00033 102_[+3]_10 chr2L:848078-848198 0.00037 74_[+3]_38 chr2L:8915880-8916000 0.00037 10_[+3]_102 chr2R:15908419-15908539 0.0004 21_[+3]_91 chr3R:20310261-20310381 0.0004 41_[+3]_71 chr3L:2566205-2566325 0.00045 34_[+3]_78 chr3R:29377488-29377608 0.00049 93_[+3]_19 chr3L:10390010-10390130 0.00049 60_[+3]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCWGCWGC width=8 seqs=73 chr3R:21949283-21949403 ( 64) GCTGCTGC 1 chr3L:6868199-6868319 ( 108) GCTGCTGC 1 chr3L:10944626-10944746 ( 15) GCTGCTGC 1 chr2R:8598738-8598858 ( 110) GCTGCTGC 1 chr3L:4508406-4508526 ( 96) GCTGCTGC 1 chr2R:13955815-13955935 ( 1) GCTGCTGC 1 chr2L:21015652-21015772 ( 108) GCTGCTGC 1 chr2L:6463585-6463705 ( 57) GCTGCTGC 1 chr3R:19276291-19276411 ( 26) GCTGCTGC 1 chr3L:10778047-10778167 ( 78) GCTGCTGC 1 chr2L:3353059-3353179 ( 8) GCTGCTGC 1 chr3L:20572810-20572930 ( 19) GCTGCTGC 1 chr2R:8325507-8325627 ( 106) GCTGCTGC 1 chr3R:28325597-28325717 ( 5) GCTGCTGC 1 chr3L:11289417-11289537 ( 3) GCTGCTGC 1 chr2L:11014360-11014480 ( 90) GCTGCTGC 1 chr3L:18058279-18058399 ( 22) GCTGCTGC 1 chr2R:8181349-8181469 ( 30) GCTGCTGC 1 chr2R:15482314-15482434 ( 19) GCTGCTGC 1 chr2R:7206545-7206665 ( 89) GCAGCTGC 1 chrX:18675396-18675516 ( 77) GCAGCTGC 1 chr3R:21934226-21934346 ( 60) GCAGCTGC 1 chr2R:14911288-14911408 ( 20) GCAGCTGC 1 chr3R:21694719-21694839 ( 46) GCAGCTGC 1 chr2R:17440229-17440349 ( 71) GCAGCTGC 1 chr2R:22302662-22302782 ( 112) GCAGCTGC 1 chr2L:7050625-7050745 ( 112) GCTGCAGC 1 chr2L:2425815-2425935 ( 79) GCTGCAGC 1 chr2R:16217120-16217240 ( 23) GCTGCAGC 1 chr2R:11607295-11607415 ( 90) GCTGCAGC 1 chr2R:22163256-22163376 ( 5) GCTGCAGC 1 chr2L:13272537-13272657 ( 112) GCAGCAGC 1 chrX:18797739-18797859 ( 87) GCAGCAGC 1 chr3R:21922285-21922405 ( 9) GCAGCAGC 1 chr2R:6108667-6108787 ( 85) GCAGCAGC 1 chrX:1809881-1810001 ( 70) GCAGCAGC 1 chr3L:16024421-16024541 ( 38) GCAGCAGC 1 chr3R:14742264-14742384 ( 100) GCAGCAGC 1 chr3L:15099713-15099833 ( 24) GCAGCAGC 1 chr3L:9378533-9378653 ( 23) GCAGCAGC 1 chr2R:7905547-7905667 ( 107) GCAGCAGC 1 chr2L:4822414-4822534 ( 36) GCAGCAGC 1 chr3L:11022097-11022217 ( 10) GCAGCAGC 1 chrX:18865226-18865346 ( 103) GCGGCTGC 1 chr2L:12610002-12610122 ( 2) GCGGCTGC 1 chrX:16621658-16621778 ( 12) GCGGCTGC 1 chr3R:4462896-4463016 ( 113) GCGGCTGC 1 chr3R:23026810-23026930 ( 113) GCCGCTGC 1 chr3L:22820290-22820410 ( 103) GCCGCTGC 1 chr3L:6834981-6835101 ( 105) GCCGCTGC 1 chr3R:26064811-26064931 ( 64) GCCGCTGC 1 chrX:16670797-16670917 ( 86) GCCGCTGC 1 chr3R:28891769-28891889 ( 56) GCGGCAGC 1 chr2R:6235492-6235612 ( 32) GCGGCAGC 1 chr3L:15105687-15105807 ( 72) GCGGCAGC 1 chr2R:7174419-7174539 ( 37) GCGGCAGC 1 chr2R:22680217-22680337 ( 41) GCTGCTCC 1 chrX:18551947-18552067 ( 24) GCCGCAGC 1 chr3L:16168614-16168734 ( 62) GCTGCTCC 1 chr2R:9437382-9437502 ( 70) GCTGCTCC 1 chr2L:11059341-11059461 ( 85) GCCGCAGC 1 chr3R:16085352-16085472 ( 24) TCTGCTGC 1 chr3L:22802083-22802203 ( 67) TCTGCTGC 1 chr3R:21892580-21892700 ( 14) GCAGCTCC 1 chr2L:533813-533933 ( 61) GCAGCTCC 1 chr2L:5465320-5465440 ( 103) TCAGCTGC 1 chr2L:848078-848198 ( 75) TCTGCAGC 1 chr2L:8915880-8916000 ( 11) TCTGCAGC 1 chr2R:15908419-15908539 ( 22) GCAGCACC 1 chr3R:20310261-20310381 ( 42) GCAGCACC 1 chr3L:2566205-2566325 ( 35) GCTGCGGC 1 chr3R:29377488-29377608 ( 94) GCAGCGGC 1 chr3L:10390010-10390130 ( 61) GCAGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.0085 E= 6.6e-018 -1283 -1283 169 -167 -1283 181 -1283 -1283 78 -158 -140 101 -1283 -1283 179 -1283 -1283 181 -1283 -1283 83 -1283 -281 144 -1283 -158 165 -1283 -1283 181 -1283 -1283 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 73 E= 6.6e-018 0.000000 0.000000 0.931507 0.068493 0.000000 1.000000 0.000000 0.000000 0.356164 0.095890 0.109589 0.438356 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.369863 0.000000 0.041096 0.589041 0.000000 0.095890 0.904110 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCWGC MEME-3 regular expression -------------------------------------------------------------------------------- GC[TA]GC[TA]GC -------------------------------------------------------------------------------- Time 19.60 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTAWTTA MEME-4 width = 8 sites = 19 llr = 193 E-value = 1.7e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTAWTTA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::74:28 pos.-specific C :::::::2 probability G :::::::: matrix T aaa36a8: bits 2.3 *** * 2.0 *** * 1.8 *** * 1.6 *** *** Relative 1.4 ******** Entropy 1.1 ******** (14.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTATTTA consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTAWTTA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:12732445-12732565 14 4.52e-06 TTTGCCCGAT TTTATTTA CTTTTTATAC chr3L:8822999-8823119 36 4.52e-06 CATACTTGTA TTTATTTA TATATGGCAG chr2L:5259248-5259368 42 4.52e-06 CGTAATAAAT TTTATTTA TTTTTTTTCC chr3L:15099713-15099833 48 4.52e-06 CACTTGCAAA TTTATTTA TACAACGTGC chrX:19314921-19315041 37 4.52e-06 CGGCATCTCG TTTATTTA TGCATCGATA chr3R:16085352-16085472 98 4.52e-06 CGCAGCGGGC TTTATTTA ACCAAGCCTC chr3R:6259977-6260097 60 4.52e-06 GGTCGGGTTG TTTATTTA AATTCTAAGC chrX:18257001-18257121 19 4.52e-06 TTTTTTATTG TTTATTTA ACATTTCTGC chr2L:7945506-7945626 64 8.85e-06 CGGAACGGCT TTTAATTA CAGCCTCGTC chr2L:9225520-9225640 3 8.85e-06 CA TTTAATTA AATTTGCATG chr3R:16019577-16019697 87 1.81e-05 TTACGACCGC TTTTATTA GCGTCCGCTC chr3R:28851636-28851756 58 1.81e-05 TGGGCGTGCG TTTTATTA GCTCCTTTCG chr3L:16209833-16209953 14 1.81e-05 tttttcgtgt ttttatta ttattttttt chr2R:6195844-6195964 4 2.24e-05 TGA TTTATTAA AGATTGCACA chr3L:15214522-15214642 74 2.86e-05 GTGCACATTG TTTATTTC ACACACTTAT chrX:18258484-18258604 102 3.28e-05 GCTTCAATCA TTTAATAA GCGCTGCCTG chr2R:17857311-17857431 106 3.87e-05 TCACAGCCAG TTTAATTC GAATTCG chr3L:7137797-7137917 1 4.32e-05 . TTTTTTAA CCAGTTTTTC chr2R:10601944-10602064 87 4.97e-05 CCGCCTCAGC TTTTTTTC TGCTGATTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTAWTTA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:12732445-12732565 4.5e-06 13_[+4]_99 chr3L:8822999-8823119 4.5e-06 35_[+4]_77 chr2L:5259248-5259368 4.5e-06 41_[+4]_71 chr3L:15099713-15099833 4.5e-06 47_[+4]_65 chrX:19314921-19315041 4.5e-06 36_[+4]_76 chr3R:16085352-16085472 4.5e-06 97_[+4]_15 chr3R:6259977-6260097 4.5e-06 59_[+4]_53 chrX:18257001-18257121 4.5e-06 18_[+4]_94 chr2L:7945506-7945626 8.8e-06 63_[+4]_49 chr2L:9225520-9225640 8.8e-06 2_[+4]_110 chr3R:16019577-16019697 1.8e-05 86_[+4]_26 chr3R:28851636-28851756 1.8e-05 57_[+4]_55 chr3L:16209833-16209953 1.8e-05 13_[+4]_99 chr2R:6195844-6195964 2.2e-05 3_[+4]_109 chr3L:15214522-15214642 2.9e-05 73_[+4]_39 chrX:18258484-18258604 3.3e-05 101_[+4]_11 chr2R:17857311-17857431 3.9e-05 105_[+4]_7 chr3L:7137797-7137917 4.3e-05 [+4]_112 chr2R:10601944-10602064 5e-05 86_[+4]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTAWTTA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTAWTTA width=8 seqs=19 chr2R:12732445-12732565 ( 14) TTTATTTA 1 chr3L:8822999-8823119 ( 36) TTTATTTA 1 chr2L:5259248-5259368 ( 42) TTTATTTA 1 chr3L:15099713-15099833 ( 48) TTTATTTA 1 chrX:19314921-19315041 ( 37) TTTATTTA 1 chr3R:16085352-16085472 ( 98) TTTATTTA 1 chr3R:6259977-6260097 ( 60) TTTATTTA 1 chrX:18257001-18257121 ( 19) TTTATTTA 1 chr2L:7945506-7945626 ( 64) TTTAATTA 1 chr2L:9225520-9225640 ( 3) TTTAATTA 1 chr3R:16019577-16019697 ( 87) TTTTATTA 1 chr3R:28851636-28851756 ( 58) TTTTATTA 1 chr3L:16209833-16209953 ( 14) TTTTATTA 1 chr2R:6195844-6195964 ( 4) TTTATTAA 1 chr3L:15214522-15214642 ( 74) TTTATTTC 1 chrX:18258484-18258604 ( 102) TTTAATAA 1 chr2R:17857311-17857431 ( 106) TTTAATTC 1 chr3L:7137797-7137917 ( 1) TTTTTTAA 1 chr2R:10601944-10602064 ( 87) TTTTTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTAWTTA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4349 E= 1.7e-003 -1089 -1089 -1089 220 -1089 -1089 -1089 220 -1089 -1089 -1089 220 182 -1089 -1089 28 83 -1089 -1089 154 -1089 -1089 -1089 220 -40 -1089 -1089 195 202 -86 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTAWTTA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 1.7e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.736842 0.000000 0.000000 0.263158 0.368421 0.000000 0.000000 0.631579 0.000000 0.000000 0.000000 1.000000 0.157895 0.000000 0.000000 0.842105 0.842105 0.157895 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTAWTTA MEME-4 regular expression -------------------------------------------------------------------------------- TTT[AT][TA]TTA -------------------------------------------------------------------------------- Time 25.55 secs. ******************************************************************************** ******************************************************************************** MOTIF AAATAAAA MEME-5 width = 8 sites = 16 llr = 156 E-value = 2.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAATAAAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A aa81aa98 pos.-specific C ::32:::2 probability G :::2:::: matrix T :::5::1: bits 2.3 ** ** 2.0 ** ** 1.8 ** *** 1.6 ** **** Relative 1.4 *** **** Entropy 1.1 *** **** (14.1 bits) 0.9 *** **** 0.7 *** **** 0.5 *** **** 0.2 ******** 0.0 -------- Multilevel AAATAAAA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5519936-5520056 4 3.66e-06 TGC AAATAAAA TATAAGCGCC chr3L:10418553-10418673 24 3.66e-06 gaataaagta aaataaaa tgaaaaaaag chr3L:21893869-21893989 14 3.66e-06 AAAAAGAGAG AAATAAAA AAGCACAAAA chr3R:5213465-5213585 58 3.66e-06 CACAAAACCA AAATAAAA TCACGGTCAG chr3L:22742280-22742400 53 1.33e-05 GCACACACAC AAACAAAA CCGCCCGCCC chr3L:11022097-11022217 57 1.33e-05 aAATGGCATT AAAGAAAA GAAAAAAAAA chr3R:27693034-27693154 6 1.68e-05 TCaaa aaaaaaaa aaaaaaaaga chrX:11998407-11998527 102 1.68e-05 GACTacaaaa aaaaaaaa aaacaaaaac chr2R:11596932-11597052 19 2.19e-05 AGAACAGCAA AACTAAAA TTGAAAATGG chr3L:11561049-11561169 32 2.69e-05 ACGAGCACGA AAATAAAC GCAGTGCAAT chr3L:15099713-15099833 15 2.69e-05 AACGTTTAAT AAATAAAC GGCAGCAGCG chr2R:6159016-6159136 46 4.02e-05 ACTGAGCCGT AACGAAAA TTGTTGTTGC chr3L:16024421-16024541 20 4.02e-05 AAGTGTAGCT AACCAAAA ACCCTCATCA chrX:13305382-13305502 44 4.02e-05 cgagggcgaa aacgaaaa cgacagcaaa chrX:18550902-18551022 98 4.88e-05 TGCTTGTACA Aaataata acagcaacag chr3L:6364073-6364193 99 6.22e-05 GGCTGTGGGC AAACAAAC GACCTGGAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5519936-5520056 3.7e-06 3_[+5]_109 chr3L:10418553-10418673 3.7e-06 23_[+5]_89 chr3L:21893869-21893989 3.7e-06 13_[+5]_99 chr3R:5213465-5213585 3.7e-06 57_[+5]_55 chr3L:22742280-22742400 1.3e-05 52_[+5]_60 chr3L:11022097-11022217 1.3e-05 56_[+5]_56 chr3R:27693034-27693154 1.7e-05 5_[+5]_107 chrX:11998407-11998527 1.7e-05 101_[+5]_11 chr2R:11596932-11597052 2.2e-05 18_[+5]_94 chr3L:11561049-11561169 2.7e-05 31_[+5]_81 chr3L:15099713-15099833 2.7e-05 14_[+5]_98 chr2R:6159016-6159136 4e-05 45_[+5]_67 chr3L:16024421-16024541 4e-05 19_[+5]_93 chrX:13305382-13305502 4e-05 43_[+5]_69 chrX:18550902-18551022 4.9e-05 97_[+5]_15 chr3L:6364073-6364193 6.2e-05 98_[+5]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAATAAAA width=8 seqs=16 chr3R:5519936-5520056 ( 4) AAATAAAA 1 chr3L:10418553-10418673 ( 24) AAATAAAA 1 chr3L:21893869-21893989 ( 14) AAATAAAA 1 chr3R:5213465-5213585 ( 58) AAATAAAA 1 chr3L:22742280-22742400 ( 53) AAACAAAA 1 chr3L:11022097-11022217 ( 57) AAAGAAAA 1 chr3R:27693034-27693154 ( 6) AAAAAAAA 1 chrX:11998407-11998527 ( 102) AAAAAAAA 1 chr2R:11596932-11597052 ( 19) AACTAAAA 1 chr3L:11561049-11561169 ( 32) AAATAAAC 1 chr3L:15099713-15099833 ( 15) AAATAAAC 1 chr2R:6159016-6159136 ( 46) AACGAAAA 1 chr3L:16024421-16024541 ( 20) AACCAAAA 1 chrX:13305382-13305502 ( 44) AACGAAAA 1 chrX:18550902-18551022 ( 98) AAATAATA 1 chr3L:6364073-6364193 ( 99) AAACAAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 2.4e+002 227 -1064 -1064 -1064 227 -1064 -1064 -1064 185 -19 -1064 -1064 -73 -61 -62 120 227 -1064 -1064 -1064 227 -1064 -1064 -1064 217 -1064 -1064 -180 197 -61 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.4e+002 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.125000 0.187500 0.187500 0.500000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.937500 0.000000 0.000000 0.062500 0.812500 0.187500 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATAAAA MEME-5 regular expression -------------------------------------------------------------------------------- AA[AC]TAAAA -------------------------------------------------------------------------------- Time 31.45 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16189197-16189317 5.00e-02 104_[+1(8.72e-06)]_8 chr2R:14520895-14521015 9.43e-01 120 chr3R:11989381-11989501 7.82e-01 120 chr2L:11059341-11059461 2.38e-02 120 chrX:18257001-18257121 2.85e-03 5_[+1(4.48e-05)]_5_[+4(4.52e-06)]_\ 13_[+4(2.86e-05)]_73 chr2R:15482314-15482434 2.13e-03 18_[+3(2.66e-05)]_20_[+1(8.72e-06)]_\ 7_[+1(8.72e-06)]_40_[+1(3.83e-05)]_3 chr3L:10913668-10913788 1.85e-03 82_[+3(2.66e-05)]_30 chr3L:1077190-1077310 7.73e-01 120 chr3L:15123831-15123951 4.97e-01 120 chr3L:17400597-17400717 1.80e-02 74_[+1(8.87e-05)]_38 chrX:18292310-18292430 1.77e-01 120 chr3R:8149329-8149449 9.03e-01 120 chr3R:12452057-12452177 9.07e-03 32_[+2(9.06e-05)]_10_[+2(1.14e-05)]_\ 62 chr3R:4462896-4463016 9.70e-02 120 chr3R:22324550-22324670 9.01e-01 120 chr2R:6195844-6195964 1.68e-04 3_[+4(2.24e-05)]_71_[+5(1.33e-05)]_\ 30 chr3R:5615660-5615780 3.11e-02 63_[+2(3.57e-05)]_49 chr3L:21694391-21694511 7.38e-01 120 chr2L:9127190-9127310 3.17e-01 120 chr2L:8915880-8916000 5.49e-01 120 chr2R:8181349-8181469 4.86e-04 23_[+3(2.66e-05)]_1_[+3(2.66e-05)]_\ 2_[+1(8.72e-06)]_1_[+1(8.87e-05)]_[+3(2.66e-05)]_53 chr2R:8593409-8593529 8.78e-01 120 chr3R:14432138-14432258 9.89e-02 69_[+1(7.36e-05)]_43 chrX:16670797-16670917 5.32e-02 120 chr3R:6259977-6260097 6.32e-03 59_[+4(4.52e-06)]_53 chr3R:21722838-21722958 1.26e-01 120 chr3R:20310261-20310381 3.47e-02 120 chrX:13305382-13305502 1.10e-03 43_[+5(4.02e-05)]_13_[+2(1.14e-05)]_\ 7_[+2(1.14e-05)]_33 chrX:15611809-15611929 4.00e-01 120 chrX:18550902-18551022 3.08e-04 97_[+5(4.88e-05)]_15 chr3L:22802083-22802203 6.24e-02 120 chr3L:660803-660923 4.55e-02 120 chr2R:22302662-22302782 2.72e-01 111_[+3(5.21e-05)]_1 chr3L:4383729-4383849 3.39e-01 120 chr2R:15908419-15908539 1.60e-01 120 chr3R:16085352-16085472 7.91e-04 97_[+4(4.52e-06)]_15 chr2R:22301891-22302011 9.21e-01 120 chr2L:16279004-16279124 9.89e-01 120 chr2R:8188782-8188902 2.55e-01 120 chrX:16621658-16621778 9.97e-02 120 chr2L:5465320-5465440 6.40e-01 120 chr2R:20161405-20161525 2.98e-01 120 chr3L:18058279-18058399 9.71e-03 [+3(2.66e-05)]_13_[+3(2.66e-05)]_91 chrX:18537243-18537363 6.79e-01 120 chrX:13304400-13304520 2.27e-01 120 chr3L:4687298-4687418 9.48e-01 120 chr2L:13923701-13923821 1.21e-02 55_[+1(8.72e-06)]_4_[+1(8.72e-06)]_\ 45 chr3R:27685292-27685412 1.01e-02 51_[+1(7.36e-05)]_1_[+1(8.72e-06)]_\ 52 chr2R:23565713-23565833 5.87e-02 120 chr3L:11022097-11022217 9.88e-05 40_[+2(3.57e-05)]_8_[+5(1.33e-05)]_\ 1_[+5(1.68e-05)]_47 chr3L:2566205-2566325 1.07e-01 26_[+1(8.87e-05)]_86 chr3R:26064811-26064931 4.44e-02 120 chr2L:533813-533933 4.89e-04 26_[+1(1.53e-05)]_86 chr2L:4822414-4822534 5.51e-03 60_[+2(7.47e-05)]_52 chr2L:11074595-11074715 9.94e-01 120 chr3L:21883333-21883453 7.04e-01 120 chrX:1338098-1338218 3.24e-01 120 chr3L:6834981-6835101 1.88e-01 120 chr3R:5213465-5213585 6.68e-04 6_[+2(6.98e-05)]_22_[+2(3.57e-05)]_\ 13_[+5(3.66e-06)]_55 chr2R:9502794-9502914 9.97e-01 120 chr2R:7905547-7905667 4.78e-02 120 chr3L:9378533-9378653 1.22e-02 120 chr2L:20870011-20870131 7.55e-01 120 chr2L:11014360-11014480 1.93e-02 69_[+1(8.87e-05)]_9_[+3(2.66e-05)]_\ 26 chr3R:28682122-28682242 9.56e-01 120 chr2R:18574659-18574779 1.66e-01 120 chr3L:21651573-21651693 8.38e-03 71_[+1(8.87e-05)]_41 chr3R:8969397-8969517 2.77e-01 120 chr2R:15952163-15952283 1.12e-01 120 chr3R:21948262-21948382 6.95e-01 120 chr2R:17440229-17440349 7.58e-03 70_[+3(5.21e-05)]_42 chr3L:21776903-21777023 9.65e-02 120 chr3L:17491823-17491943 2.36e-02 36_[+2(3.57e-05)]_76 chr3L:17002294-17002414 9.77e-01 120 chr3R:30840824-30840944 7.11e-01 120 chr3L:3535849-3535969 3.80e-02 120 chrX:19314921-19315041 1.23e-02 36_[+4(4.52e-06)]_76 chr3R:28895051-28895171 1.23e-01 120 chrX:2323852-2323972 9.68e-01 120 chr2R:7174419-7174539 5.11e-02 120 chr2R:10200492-10200612 5.46e-01 120 chr3L:15099713-15099833 3.05e-05 14_[+5(2.69e-05)]_25_[+4(4.52e-06)]_\ 65 chrX:13625474-13625594 3.68e-02 83_[+2(1.14e-05)]_29 chr2R:9437382-9437502 1.29e-01 120 chr2L:19311588-19311708 3.39e-02 12_[+2(9.06e-05)]_100 chr3R:14743574-14743694 1.57e-01 23_[+1(7.36e-05)]_89 chr2R:18648449-18648569 5.13e-01 120 chr2L:5740913-5741033 8.66e-01 120 chr3R:14742264-14742384 1.41e-03 26_[+2(6.98e-05)]_22_[+2(1.14e-05)]_\ 1_[+2(1.14e-05)]_47 chrX:8512400-8512520 7.98e-01 120 chr3L:22820290-22820410 1.63e-02 120 chr2R:11609600-11609720 7.57e-02 120 chr3R:7224161-7224281 3.96e-02 4_[+1(7.36e-05)]_108 chr3R:31504991-31505111 7.03e-01 120 chr3L:11289417-11289537 2.07e-02 2_[+3(2.66e-05)]_4_[+3(2.66e-05)]_\ 98 chr3R:28325597-28325717 2.16e-03 1_[+3(2.66e-05)]_5_[+1(3.83e-05)]_\ 10_[+1(8.72e-06)]_14_[+1(8.72e-06)]_11_[+1(1.53e-05)]_19_[+1(8.72e-06)]_12 chr3L:16208194-16208314 9.99e-01 120 chr3R:21604676-21604796 6.09e-01 120 chr2R:8325507-8325627 1.57e-01 105_[+3(2.66e-05)]_7 chr3L:16168614-16168734 2.43e-01 120 chr3L:16214969-16215089 6.11e-01 120 chr3R:21237234-21237354 3.95e-04 43_[+5(1.68e-05)]_69 chr3L:13218422-13218542 8.09e-01 120 chrX:11998407-11998527 3.27e-04 97_[+5(1.68e-05)]_5_[+2(1.14e-05)]_\ 2 chr3L:8460566-8460686 7.64e-01 120 chr2L:2168959-2169079 1.28e-01 120 chr3R:21694719-21694839 3.81e-02 45_[+3(5.21e-05)]_67 chr3L:21893869-21893989 1.76e-03 13_[+5(3.66e-06)]_99 chr2R:7204502-7204622 1.71e-01 120 chr2R:8180475-8180595 7.13e-01 120 chr2R:10601944-10602064 9.62e-03 86_[+4(4.97e-05)]_6_[+1(9.36e-05)]_\ 12 chr2R:22099376-22099496 7.75e-01 120 chr2R:9180365-9180485 4.43e-01 120 chr3L:15105687-15105807 3.19e-02 120 chr3L:20572810-20572930 2.45e-03 18_[+3(2.66e-05)]_2_[+1(8.72e-06)]_\ 84 chr3R:9964770-9964890 1.99e-01 5_[+2(9.06e-05)]_107 chr3R:21945892-21946012 4.02e-02 120 chr2R:7056847-7056967 2.74e-01 120 chr3R:20774242-20774362 2.24e-01 120 chr2R:17857311-17857431 1.13e-01 105_[+4(3.87e-05)]_7 chr2L:17468599-17468719 7.43e-01 120 chr3R:23026810-23026930 8.49e-02 120 chr2L:3353059-3353179 7.06e-05 7_[+3(2.66e-05)]_5_[+1(8.72e-06)]_6_\ [+3(2.66e-05)]_1_[+3(2.66e-05)]_52_[+4(6.62e-05)]_9 chr3R:12288769-12288889 7.87e-01 120 chr2L:5259248-5259368 1.51e-03 41_[+4(4.52e-06)]_1_[+4(4.97e-05)]_\ 62 chr3L:16024421-16024541 1.06e-04 19_[+5(4.02e-05)]_18_[+2(1.14e-05)]_\ 67 chr3L:15953008-15953128 9.87e-01 120 chr2L:848078-848198 4.65e-01 120 chr3L:4490999-4491119 3.24e-01 120 chr3L:17564798-17564918 3.79e-01 120 chrX:18258484-18258604 3.77e-02 101_[+4(3.28e-05)]_11 chr3R:21970702-21970822 2.12e-02 31_[+1(8.72e-06)]_81 chr2R:6547552-6547672 5.96e-01 120 chrX:3291355-3291475 1.68e-02 6_[+2(1.14e-05)]_106 chr2R:6035339-6035459 7.18e-02 84_[+1(8.87e-05)]_28 chr2R:5999538-5999658 2.33e-02 36_[+2(4.24e-05)]_76 chrX:18356278-18356398 5.96e-01 120 chr2R:22163256-22163376 9.69e-03 4_[+3(7.76e-05)]_[+2(3.57e-05)]_100 chr3L:10778047-10778167 1.37e-03 77_[+3(2.66e-05)]_19_[+1(8.72e-06)]_\ 8 chr3L:10418553-10418673 7.61e-05 23_[+5(3.66e-06)]_13_[+5(1.68e-05)]_\ 68 chr3L:21104747-21104867 1.45e-01 120 chr3L:21052334-21052454 9.17e-03 106_[+1(3.83e-05)]_6 chr2R:6522501-6522621 2.05e-01 120 chr3R:19312552-19312672 6.44e-01 120 chr3R:19276291-19276411 8.02e-02 25_[+3(2.66e-05)]_87 chr2L:9225520-9225640 6.37e-04 2_[+4(8.85e-06)]_110 chr3R:6923318-6923438 5.11e-02 120 chr3L:16209833-16209953 8.00e-04 1_[+4(4.97e-05)]_4_[+4(1.81e-05)]_\ 10_[+1(1.53e-05)]_81 chr3L:4619624-4619744 5.23e-04 54_[+5(1.68e-05)]_58 chr3L:6364073-6364193 9.89e-02 98_[+5(6.22e-05)]_14 chrX:1809881-1810001 3.51e-02 120 chr2R:11607295-11607415 3.87e-03 89_[+3(7.76e-05)]_6_[+2(3.57e-05)]_\ 9 chrX:2287184-2287304 3.51e-01 120 chr2R:14010410-14010530 4.00e-01 120 chr2L:11032648-11032768 1.09e-02 79_[+1(8.72e-06)]_33 chr3L:10716981-10717101 9.03e-01 120 chr2R:14911288-14911408 1.08e-03 19_[+3(5.21e-05)]_83_[+5(8.40e-05)]_\ 2 chr3R:23878097-23878217 3.82e-01 120 chr2R:8953943-8954063 8.01e-04 59_[+5(1.68e-05)]_53 chr3L:10390010-10390130 4.53e-04 2_[+5(1.68e-05)]_110 chr2R:6108667-6108787 4.30e-03 120 chrX:1614578-1614698 9.91e-01 120 chr2R:20187493-20187613 9.88e-01 120 chr3L:493625-493745 5.99e-01 120 chrX:1308603-1308723 9.27e-01 120 chr2L:7051903-7052023 5.91e-01 120 chr2L:7451120-7451240 9.06e-01 120 chr3R:23325851-23325971 6.52e-02 120 chr2R:18195165-18195285 1.28e-03 37_[+1(7.36e-05)]_75 chr3R:7995932-7996052 3.84e-01 120 chr2R:11596932-11597052 1.80e-03 10_[+2(6.98e-05)]_[+5(2.19e-05)]_82_\ [+2(1.14e-05)]_4 chr3L:17596283-17596403 3.23e-01 120 chr2R:6235492-6235612 7.19e-03 120 chr2L:6463585-6463705 8.63e-02 56_[+3(2.66e-05)]_56 chrX:18551947-18552067 1.13e-03 34_[+2(1.14e-05)]_78 chr3R:6141870-6141990 3.31e-01 120 chr3R:28891769-28891889 8.82e-02 120 chr2R:5716244-5716364 4.45e-01 120 chrX:18956733-18956853 7.09e-01 120 chr3R:28851636-28851756 2.06e-02 57_[+4(1.81e-05)]_55 chr3R:27693034-27693154 1.22e-03 2_[+5(1.68e-05)]_[+5(1.68e-05)]_\ [+5(1.33e-05)]_94 chr3R:21934226-21934346 5.47e-03 59_[+3(5.21e-05)]_53 chr2R:7195065-7195185 3.12e-01 120 chr3R:16216966-16217086 7.47e-01 120 chr2R:16217120-16217240 4.23e-02 22_[+3(7.76e-05)]_90 chr2R:23982216-23982336 5.69e-01 120 chr2L:2425815-2425935 6.30e-03 78_[+3(7.76e-05)]_34 chr3R:5519936-5520056 1.37e-03 3_[+5(3.66e-06)]_109 chr2L:21015652-21015772 6.46e-03 55_[+1(3.83e-05)]_44_[+3(2.66e-05)]_\ 5 chr2R:6548694-6548814 5.32e-02 57_[+1(3.83e-05)]_55 chr3R:21892580-21892700 2.66e-01 120 chr3L:16182791-16182911 3.16e-01 120 chr3L:20734014-20734134 1.04e-01 120 chr3R:19254109-19254229 3.41e-02 120 chrX:1551665-1551785 1.00e+00 120 chr2R:13955815-13955935 5.40e-03 [+3(2.66e-05)]_8_[+1(8.87e-05)]_96 chrX:8178589-8178709 9.99e-01 120 chr2R:18589915-18590035 4.06e-01 120 chr2R:11365255-11365375 6.97e-01 120 chr3R:21922285-21922405 2.17e-01 120 chr3L:4508406-4508526 9.15e-04 71_[+3(2.66e-05)]_5_[+1(8.72e-06)]_\ [+3(2.66e-05)]_20 chrX:10923879-10923999 9.74e-01 120 chr3L:8822999-8823119 2.61e-02 35_[+4(4.52e-06)]_77 chr3L:2568376-2568496 2.16e-03 106_[+5(1.33e-05)]_6 chr2R:8598738-8598858 1.99e-03 36_[+1(8.87e-05)]_16_[+1(8.72e-06)]_\ 38_[+3(2.66e-05)]_6 chr2L:18481925-18482045 1.95e-03 65_[+5(1.68e-05)]_47 chr2R:24291380-24291500 6.81e-01 120 chr3L:11561049-11561169 2.72e-02 31_[+5(2.69e-05)]_81 chrX:18265199-18265319 1.28e-02 120 chr2L:11024417-11024537 2.54e-02 120 chr2R:20173666-20173786 5.51e-01 120 chr3L:16941454-16941574 1.98e-02 120 chr2L:12610002-12610122 3.86e-02 120 chr3L:10944626-10944746 4.44e-04 14_[+3(2.66e-05)]_29_[+1(3.83e-05)]_\ 61 chr2L:5232297-5232417 8.22e-01 120 chrX:21123661-21123781 4.42e-04 43_[+4(4.97e-05)]_69 chr3L:21906624-21906744 9.62e-01 120 chr3R:11945955-11946075 2.57e-02 37_[+2(1.14e-05)]_75 chr2L:4581178-4581298 8.15e-01 120 chr3L:6868199-6868319 9.77e-04 74_[+3(2.66e-05)]_5_[+1(3.83e-05)]_\ 6_[+3(2.66e-05)]_1_[+3(2.66e-05)]_2 chr2R:22680217-22680337 2.22e-01 120 chr3R:30095647-30095767 5.83e-01 120 chrX:18797739-18797859 4.85e-02 120 chr3R:16019577-16019697 2.71e-03 33_[+1(1.53e-05)]_45_[+4(1.81e-05)]_\ 26 chr3L:15214522-15214642 5.91e-02 73_[+4(2.86e-05)]_39 chr3L:7137797-7137917 4.92e-07 [+4(4.32e-05)]_13_[+1(8.72e-06)]_34_\ [+2(1.14e-05)]_49 chr2L:7945506-7945626 9.79e-04 63_[+4(8.85e-06)]_49 chr3L:6076583-6076703 1.34e-01 120 chr2L:11399908-11400028 7.96e-04 61_[+2(3.57e-05)]_41_[+1(8.72e-06)]_\ 2 chrX:18865226-18865346 4.04e-03 42_[+2(1.14e-05)]_22_[+2(1.14e-05)]_\ 40 chr3L:21889712-21889832 7.92e-02 120 chr2R:6159016-6159136 1.35e-03 45_[+5(4.02e-05)]_[+1(8.72e-06)]_59 chr2L:13777306-13777426 5.93e-01 120 chr3L:8450897-8451017 2.98e-02 7_[+1(8.72e-06)]_1_[+1(8.72e-06)]_\ 96 chr2L:13272537-13272657 2.77e-02 23_[+2(6.98e-05)]_89 chr2R:6599725-6599845 1.40e-01 120 chrX:19248733-19248853 5.97e-01 120 chr2L:5332685-5332805 7.58e-01 120 chr2L:11069089-11069209 7.43e-01 120 chr3R:29377488-29377608 6.55e-02 120 chr2L:7050625-7050745 1.66e-01 111_[+3(7.76e-05)]_1 chr2L:15406083-15406203 4.54e-03 [+1(7.36e-05)]_14_[+1(7.36e-05)]_17_\ [+1(9.36e-05)]_12_[+4(4.97e-05)]_45 chr2R:12732445-12732565 1.98e-02 13_[+4(4.52e-06)]_2_[+4(8.41e-05)]_\ 89 chrX:18675396-18675516 6.59e-02 76_[+3(5.21e-05)]_36 chr3L:22742280-22742400 6.73e-04 52_[+5(1.33e-05)]_38_[+2(1.14e-05)]_\ 14 chr3R:21949283-21949403 1.19e-01 63_[+3(2.66e-05)]_49 chr3R:28540773-28540893 9.40e-01 120 chr3L:1381090-1381210 1.33e-01 120 chr2R:7206545-7206665 1.44e-01 88_[+3(5.21e-05)]_24 chr3R:17709890-17710010 4.69e-02 20_[+2(3.57e-05)]_92 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n07.farnam.hpc.yale.internal ********************************************************************************