******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12769.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:7401127-7401247 1.0000 120 chr3L:21667669-21667789 1.0000 120 chr2R:17160416-17160536 1.0000 120 chrX:9877375-9877495 1.0000 120 chr3L:612346-612466 1.0000 120 chr2R:6740649-6740769 1.0000 120 chr2R:23086396-23086516 1.0000 120 chr3R:30049686-30049806 1.0000 120 chr2L:20483742-20483862 1.0000 120 chrX:12434765-12434885 1.0000 120 chr3R:5057398-5057518 1.0000 120 chr3R:30176476-30176596 1.0000 120 chr2R:11278011-11278131 1.0000 120 chr3L:9813478-9813598 1.0000 120 chr3R:14331632-14331752 1.0000 120 chr2L:6772787-6772907 1.0000 120 chr3R:31603412-31603532 1.0000 120 chr3R:18395054-18395174 1.0000 120 chr3L:1002856-1002976 1.0000 120 chr2R:15409627-15409747 1.0000 120 chrX:20779233-20779353 1.0000 120 chr2R:17165906-17166026 1.0000 120 chrX:18683617-18683737 1.0000 120 chr2L:14679734-14679854 1.0000 120 chr3L:6704628-6704748 1.0000 120 chr3L:1354425-1354545 1.0000 120 chr2R:16601675-16601795 1.0000 120 chr3L:9556860-9556980 1.0000 120 chr3R:17066909-17067029 1.0000 120 chr2R:15989394-15989514 1.0000 120 chr2R:9130463-9130583 1.0000 120 chr2L:19406115-19406235 1.0000 120 chr2L:6751134-6751254 1.0000 120 chr3L:119533-119653 1.0000 120 chr3R:26615589-26615709 1.0000 120 chr3L:5569935-5570055 1.0000 120 chr2L:20867490-20867610 1.0000 120 chrX:1384338-1384458 1.0000 120 chr2L:10034420-10034540 1.0000 120 chr3R:7113233-7113353 1.0000 120 chr2L:16789027-16789147 1.0000 120 chrX:16616943-16617063 1.0000 120 chr2R:14341364-14341484 1.0000 120 chr3R:29984151-29984271 1.0000 120 chr2R:17166105-17166225 1.0000 120 chr2R:20661250-20661370 1.0000 120 chr2R:8094387-8094507 1.0000 120 chr2L:7675803-7675923 1.0000 120 chr3L:2446354-2446474 1.0000 120 chr2L:4571410-4571530 1.0000 120 chr3L:20370348-20370468 1.0000 120 chr3L:895407-895527 1.0000 120 chrX:2162739-2162859 1.0000 120 chr2R:15987000-15987120 1.0000 120 chr3L:586719-586839 1.0000 120 chr3R:4180679-4180799 1.0000 120 chr3R:26332073-26332193 1.0000 120 chr3R:16954586-16954706 1.0000 120 chr3L:6700419-6700539 1.0000 120 chr2R:6736736-6736856 1.0000 120 chr3L:3456294-3456414 1.0000 120 chrX:11517500-11517620 1.0000 120 chr3L:1580319-1580439 1.0000 120 chr2L:9558027-9558147 1.0000 120 chr3R:15123127-15123247 1.0000 120 chr3L:5666555-5666675 1.0000 120 chr3R:24009043-24009163 1.0000 120 chr3L:22404231-22404351 1.0000 120 chr2R:16847367-16847487 1.0000 120 chrX:5966800-5966920 1.0000 120 chr3R:30544267-30544387 1.0000 120 chr2R:8091631-8091751 1.0000 120 chr2L:9551291-9551411 1.0000 120 chr2R:8060051-8060171 1.0000 120 chr3R:28323816-28323936 1.0000 120 chr2R:7742855-7742975 1.0000 120 chr3R:6403841-6403961 1.0000 120 chr3L:1000696-1000816 1.0000 120 chr3R:25447553-25447673 1.0000 120 chr3L:4549500-4549620 1.0000 120 chr3L:12277880-12278000 1.0000 120 chr3R:18103350-18103470 1.0000 120 chr2R:21180641-21180761 1.0000 120 chr3R:16074212-16074332 1.0000 120 chr3R:30106052-30106172 1.0000 120 chrX:3356435-3356555 1.0000 120 chr3L:1020020-1020140 1.0000 120 chr3L:21380372-21380492 1.0000 120 chr2L:11170708-11170828 1.0000 120 chr2R:20945575-20945695 1.0000 120 chr3R:7658258-7658378 1.0000 120 chr3R:17781005-17781125 1.0000 120 chrX:2208790-2208910 1.0000 120 chrX:9876547-9876667 1.0000 120 chr3R:21713270-21713390 1.0000 120 chrX:20776408-20776528 1.0000 120 chr3R:11945922-11946042 1.0000 120 chrX:18118635-18118755 1.0000 120 chr2R:9819252-9819372 1.0000 120 chr3L:10201864-10201984 1.0000 120 chrX:18117123-18117243 1.0000 120 chr2L:5766150-5766270 1.0000 120 chr3R:6828511-6828631 1.0000 120 chr3R:31039022-31039142 1.0000 120 chr3L:21040967-21041087 1.0000 120 chr2R:23935924-23936044 1.0000 120 chr2R:11232295-11232415 1.0000 120 chr2R:23873012-23873132 1.0000 120 chr3R:10792711-10792831 1.0000 120 chr2R:25009413-25009533 1.0000 120 chr3L:8655657-8655777 1.0000 120 chr2L:2727453-2727573 1.0000 120 chr3L:2090062-2090182 1.0000 120 chr2L:16766532-16766652 1.0000 120 chr3R:28914585-28914705 1.0000 120 chr2L:2837882-2838002 1.0000 120 chr3L:6130704-6130824 1.0000 120 chrX:20518344-20518464 1.0000 120 chr3R:26549728-26549848 1.0000 120 chr2R:9307551-9307671 1.0000 120 chr2R:21642022-21642142 1.0000 120 chr2L:9417638-9417758 1.0000 120 chr3L:7086217-7086337 1.0000 120 chr2R:7033352-7033472 1.0000 120 chr3R:24283049-24283169 1.0000 120 chr2R:24258807-24258927 1.0000 120 chr3R:19891454-19891574 1.0000 120 chr3R:22756840-22756960 1.0000 120 chr2R:24327356-24327476 1.0000 120 chr3L:16569633-16569753 1.0000 120 chr3R:19625495-19625615 1.0000 120 chr3L:17388677-17388797 1.0000 120 chr2L:5149962-5150082 1.0000 120 chr2R:14288033-14288153 1.0000 120 chrX:14688500-14688620 1.0000 120 chrX:13604556-13604676 1.0000 120 chr3L:18000282-18000402 1.0000 120 chr3L:8654935-8655055 1.0000 120 chr2R:22149103-22149223 1.0000 120 chr2R:21263651-21263771 1.0000 120 chr2R:8059183-8059303 1.0000 120 chr3R:22568668-22568788 1.0000 120 chrX:1283682-1283802 1.0000 120 chr3L:642267-642387 1.0000 120 chr3L:16151900-16152020 1.0000 120 chr2L:19849885-19850005 1.0000 120 chr2R:23730389-23730509 1.0000 120 chr2L:1122616-1122736 1.0000 120 chr3L:22380754-22380874 1.0000 120 chr3L:13881680-13881800 1.0000 120 chr3L:9433264-9433384 1.0000 120 chr3L:3733476-3733596 1.0000 120 chrX:20916574-20916694 1.0000 120 chr2R:12604463-12604583 1.0000 120 chr3R:13614954-13615074 1.0000 120 chr2R:17107956-17108076 1.0000 120 chr2L:9560331-9560451 1.0000 120 chr3L:641490-641610 1.0000 120 chr3R:23662908-23663028 1.0000 120 chr2R:6519818-6519938 1.0000 120 chr2L:20483942-20484062 1.0000 120 chr2R:8058517-8058637 1.0000 120 chr2L:7333794-7333914 1.0000 120 chr3R:26106282-26106402 1.0000 120 chr3L:15953091-15953211 1.0000 120 chr2R:5984222-5984342 1.0000 120 chrX:1284348-1284468 1.0000 120 chr3R:31125862-31125982 1.0000 120 chr3L:20441150-20441270 1.0000 120 chr2L:11228153-11228273 1.0000 120 chr3L:2888295-2888415 1.0000 120 chr2R:19268648-19268768 1.0000 120 chr3R:4250092-4250212 1.0000 120 chr2R:8062629-8062749 1.0000 120 chr2L:4886814-4886934 1.0000 120 chr2R:20665084-20665204 1.0000 120 chr3L:20466704-20466824 1.0000 120 chrX:1383490-1383610 1.0000 120 chrX:7708196-7708316 1.0000 120 chr2L:19422791-19422911 1.0000 120 chr3R:26926579-26926699 1.0000 120 chrX:18364136-18364256 1.0000 120 chr2R:18816311-18816431 1.0000 120 chr3R:13452413-13452533 1.0000 120 chr2L:5742590-5742710 1.0000 120 chr2R:15136567-15136687 1.0000 120 chr2R:8061508-8061628 1.0000 120 chrX:20779921-20780041 1.0000 120 chr3L:8080903-8081023 1.0000 120 chr3L:6608986-6609106 1.0000 120 chr3L:465516-465636 1.0000 120 chr3R:5315178-5315298 1.0000 120 chr3R:11451372-11451492 1.0000 120 chr3L:13420384-13420504 1.0000 120 chr2R:11190015-11190135 1.0000 120 chr3R:18114710-18114830 1.0000 120 chr3L:455241-455361 1.0000 120 chr3R:16873451-16873571 1.0000 120 chr2L:7492379-7492499 1.0000 120 chr2R:15137661-15137781 1.0000 120 chr2R:21711486-21711606 1.0000 120 chr2L:20484730-20484850 1.0000 120 chr2R:9859970-9860090 1.0000 120 chr3R:5055731-5055851 1.0000 120 chr3R:9477247-9477367 1.0000 120 chr2R:13224393-13224513 1.0000 120 chr3R:30529586-30529706 1.0000 120 chr3R:7990451-7990571 1.0000 120 chr2L:16707510-16707630 1.0000 120 chr2L:14851731-14851851 1.0000 120 chr3R:4127639-4127759 1.0000 120 chr3R:9878339-9878459 1.0000 120 chr3R:15928376-15928496 1.0000 120 chr3L:6496730-6496850 1.0000 120 chrX:20238866-20238986 1.0000 120 chr3L:17045846-17045966 1.0000 120 chr3L:18989696-18989816 1.0000 120 chr2R:5496577-5496697 1.0000 120 chr3R:13998769-13998889 1.0000 120 chr2R:24971877-24971997 1.0000 120 chrX:12670745-12670865 1.0000 120 chr2L:1118218-1118338 1.0000 120 chr3L:9690897-9691017 1.0000 120 chr3R:13453367-13453487 1.0000 120 chr3R:19826826-19826946 1.0000 120 chr2L:136876-136996 1.0000 120 chr3R:30111082-30111202 1.0000 120 chr2R:18344061-18344181 1.0000 120 chr2R:23057689-23057809 1.0000 120 chr2R:6742396-6742516 1.0000 120 chr2L:8879736-8879856 1.0000 120 chr3R:24603476-24603596 1.0000 120 chr2L:6471967-6472087 1.0000 120 chr2R:6938257-6938377 1.0000 120 chr3R:18468793-18468913 1.0000 120 chr2R:18535964-18536084 1.0000 120 chr3R:13273621-13273741 1.0000 120 chr2R:13993367-13993487 1.0000 120 chr3L:18769018-18769138 1.0000 120 chr2L:3417651-3417771 1.0000 120 chrX:11556917-11557037 1.0000 120 chr3L:7909552-7909672 1.0000 120 chr2R:22200979-22201099 1.0000 120 chrX:1287468-1287588 1.0000 120 chr2R:20773487-20773607 1.0000 120 chr3L:697894-698014 1.0000 120 chrX:1984646-1984766 1.0000 120 chr3R:18103559-18103679 1.0000 120 chr3L:11715359-11715479 1.0000 120 chr3L:19566223-19566343 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG12769/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12769.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.25 C 0.252 G 0.252 T 0.245 Background letter frequencies (from file dataset with add-one prior applied): A 0.25 C 0.252 G 0.252 T 0.245 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TATTTTTR MEME-1 width = 8 sites = 30 llr = 276 E-value = 6.8e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATTTTTR MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:::2:6 pos.-specific C 1::::::1 probability G :::::::3 matrix T 9:aaa8a: bits 2.0 **** 1.8 **** * 1.6 **** * 1.4 ***** * Relative 1.2 ******* Entropy 1.0 ******* (13.3 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TATTTTTA consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTTTTR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13224393-13224513 46 1.35e-05 AGTTGGCAGG TATTTTTA GCGCTCGACC chr3R:9477247-9477367 92 1.35e-05 TGGGCGGGCA TATTTTTA CGCCGTGATT chr2R:21711486-21711606 22 1.35e-05 AAATGCTTTC TATTTTTA GAGAACCCGC chr3L:465516-465636 28 1.35e-05 ATGCGTTGGC TATTTTTA CCAGCCGCAA chr3L:9433264-9433384 17 1.35e-05 GCCCTCTTGC TATTTTTA CCGCCATGAG chr3L:16151900-16152020 94 1.35e-05 CTTTCGTGGC TATTTTTA TGGTGGAACG chr2L:5149962-5150082 87 1.35e-05 TATTTTGTTT TATTTTTA CACACAATTT chr2R:11232295-11232415 6 1.35e-05 TTCGC TATTTTTA GGCCTCTAAT chr3L:21380372-21380492 80 1.35e-05 AAGTCATCTC TATTTTTA GCCAGCATGG chr3L:1020020-1020140 62 1.35e-05 ATGGGTTTGT TATTTTTA CACATTTCTG chr2R:14341364-14341484 76 1.35e-05 TTATGCCATT TATTTTTA GTCACCAAAA chr3L:17045846-17045966 113 2.71e-05 GATCGCGTTT TATTTTTG chr3L:1580319-1580439 84 2.71e-05 TGTGGCGAGC TATTTTTG GGGCACGCTT chr3L:2446354-2446474 76 2.71e-05 CATTCATTGC TATTTTTG GTCCGCCGAG chr3L:21667669-21667789 10 2.71e-05 CATTGATGT TATTTTTG GCCAGTGGGC chr3R:24603476-24603596 17 4.09e-05 AGCCGAGCAG TATTTATA AACATTTCCA chrX:20779921-20780041 20 4.09e-05 ATGATAAATG TATTTATA GGAATTTGGG chrX:14688500-14688620 97 4.09e-05 TCTGTGTGGA TATTTAta tgtggatgtg chr2L:20484730-20484850 38 6.85e-05 CCGTTATTGC TATTTATG GAGAGCATCG chr3L:3733476-3733596 33 6.85e-05 TCGATTTGTT TATTTTTC TTGGCCAACT chr3R:21713270-21713390 25 6.85e-05 TTCGCCAACG TATTTTTC GGGGCGTGTG chr3R:16074212-16074332 101 6.85e-05 AGGAATTTAA TATTTATG AAGAGGAGAC chr3R:7113233-7113353 68 6.85e-05 GTTGAGCAAT TATTTTTC ACGATGTTTG chr3R:30049686-30049806 79 6.85e-05 atcGCCTACG TATTTATG GGTCGACGTC chr2L:7401127-7401247 45 6.85e-05 TTCAAAAATC TATTTATG TTGGCCCATA chr3R:6403841-6403961 50 8.24e-05 CATAATCCAG CATTTTTA TACTCCACCC chr3L:3456294-3456414 53 8.24e-05 CAAAAATACG CATTTTTA TGTTTACGGC chr2R:12604463-12604583 32 9.64e-05 TTTTGTGACC CATTTTTG GGCTGTGGTC chr2R:21642022-21642142 54 9.64e-05 CATTCCCGGG CATTTTTG CTTTCCCGGG chr3R:28914585-28914705 35 1.38e-04 AAGTGCGCAA TATTTTCA CACTTTTCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTTTTR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13224393-13224513 1.4e-05 45_[+1]_67 chr3R:9477247-9477367 1.4e-05 91_[+1]_21 chr2R:21711486-21711606 1.4e-05 21_[+1]_91 chr3L:465516-465636 1.4e-05 27_[+1]_85 chr3L:9433264-9433384 1.4e-05 16_[+1]_96 chr3L:16151900-16152020 1.4e-05 93_[+1]_19 chr2L:5149962-5150082 1.4e-05 86_[+1]_26 chr2R:11232295-11232415 1.4e-05 5_[+1]_107 chr3L:21380372-21380492 1.4e-05 79_[+1]_33 chr3L:1020020-1020140 1.4e-05 61_[+1]_51 chr2R:14341364-14341484 1.4e-05 75_[+1]_37 chr3L:17045846-17045966 2.7e-05 112_[+1] chr3L:1580319-1580439 2.7e-05 83_[+1]_29 chr3L:2446354-2446474 2.7e-05 75_[+1]_37 chr3L:21667669-21667789 2.7e-05 9_[+1]_103 chr3R:24603476-24603596 4.1e-05 16_[+1]_96 chrX:20779921-20780041 4.1e-05 19_[+1]_93 chrX:14688500-14688620 4.1e-05 96_[+1]_16 chr2L:20484730-20484850 6.8e-05 37_[+1]_75 chr3L:3733476-3733596 6.8e-05 32_[+1]_80 chr3R:21713270-21713390 6.8e-05 24_[+1]_88 chr3R:16074212-16074332 6.8e-05 100_[+1]_12 chr3R:7113233-7113353 6.8e-05 67_[+1]_45 chr3R:30049686-30049806 6.8e-05 78_[+1]_34 chr2L:7401127-7401247 6.8e-05 44_[+1]_68 chr3R:6403841-6403961 8.2e-05 49_[+1]_63 chr3L:3456294-3456414 8.2e-05 52_[+1]_60 chr2R:12604463-12604583 9.6e-05 31_[+1]_81 chr2R:21642022-21642142 9.6e-05 53_[+1]_59 chr3R:28914585-28914705 0.00014 34_[+1]_78 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTTTTR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATTTTTR width=8 seqs=30 chr2R:13224393-13224513 ( 46) TATTTTTA 1 chr3R:9477247-9477367 ( 92) TATTTTTA 1 chr2R:21711486-21711606 ( 22) TATTTTTA 1 chr3L:465516-465636 ( 28) TATTTTTA 1 chr3L:9433264-9433384 ( 17) TATTTTTA 1 chr3L:16151900-16152020 ( 94) TATTTTTA 1 chr2L:5149962-5150082 ( 87) TATTTTTA 1 chr2R:11232295-11232415 ( 6) TATTTTTA 1 chr3L:21380372-21380492 ( 80) TATTTTTA 1 chr3L:1020020-1020140 ( 62) TATTTTTA 1 chr2R:14341364-14341484 ( 76) TATTTTTA 1 chr3L:17045846-17045966 ( 113) TATTTTTG 1 chr3L:1580319-1580439 ( 84) TATTTTTG 1 chr3L:2446354-2446474 ( 76) TATTTTTG 1 chr3L:21667669-21667789 ( 10) TATTTTTG 1 chr3R:24603476-24603596 ( 17) TATTTATA 1 chrX:20779921-20780041 ( 20) TATTTATA 1 chrX:14688500-14688620 ( 97) TATTTATA 1 chr2L:20484730-20484850 ( 38) TATTTATG 1 chr3L:3733476-3733596 ( 33) TATTTTTC 1 chr3R:21713270-21713390 ( 25) TATTTTTC 1 chr3R:16074212-16074332 ( 101) TATTTATG 1 chr3R:7113233-7113353 ( 68) TATTTTTC 1 chr3R:30049686-30049806 ( 79) TATTTATG 1 chr2L:7401127-7401247 ( 45) TATTTATG 1 chr3R:6403841-6403961 ( 50) CATTTTTA 1 chr3L:3456294-3456414 ( 53) CATTTTTA 1 chr2R:12604463-12604583 ( 32) CATTTTTG 1 chr2R:21642022-21642142 ( 54) CATTTTTG 1 chr3R:28914585-28914705 ( 35) TATTTTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTTTTR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1531 E= 6.8e-005 -1155 -92 -1155 182 200 -1155 -1155 -1155 -1155 -1155 -1155 203 -1155 -1155 -1155 203 -1155 -1155 -1155 203 -10 -1155 -1155 164 -1155 -292 -1155 198 118 -134 40 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTTTTR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 6.8e-005 0.000000 0.133333 0.000000 0.866667 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.233333 0.000000 0.000000 0.766667 0.000000 0.033333 0.000000 0.966667 0.566667 0.100000 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATTTTTR MEME-1 regular expression -------------------------------------------------------------------------------- TATTT[TA]T[AG] -------------------------------------------------------------------------------- Time 7.47 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCCATTY MEME-2 width = 8 sites = 40 llr = 342 E-value = 1.3e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCCATTY MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::a2:: pos.-specific C 17aa::13 probability G :::::::1 matrix T 93:::996 bits 2.0 *** 1.8 *** 1.6 *** * 1.4 * ***** Relative 1.2 ******* Entropy 1.0 ******* (12.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCCCATTT consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCATTY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:19849885-19850005 85 1.44e-05 GCATCGTGAC TCCCATTT CTCTCGGATG chr2L:5149962-5150082 8 1.44e-05 ACATTTC TCCCATTT GGCCTTTCAC chr2R:23873012-23873132 67 1.44e-05 aatacaacat tcccattt ccattcTCTT chr3R:6828511-6828631 65 1.44e-05 ACAAGTTTGT TCCCATTT CCCTGCCACC chrX:5966800-5966920 56 1.44e-05 ACATGTGCGC TCCCATTT TCCGCTTTTC chr3R:24009043-24009163 65 1.44e-05 CCATTTGGAT TCCCATTT CCACCTCGCC chr3L:5666555-5666675 17 1.44e-05 agttccattt tcccattt tcctcttttc chrX:18683617-18683737 67 1.44e-05 ccactcccac tcccattT TGAGAGCAGG chr3L:6496730-6496850 27 2.92e-05 TCCCTCCTCT TCCCATTC CGACTTCCCT chr3L:641490-641610 17 2.92e-05 TCCAGCTCAT TCCCATTC CAGATTCCAG chr3R:10792711-10792831 7 2.92e-05 ATTCCT TCCCATTC TCGCGGGAGA chr2R:8060051-8060171 2 2.92e-05 T TCCCATTC AAATTTAAAT chr3L:20370348-20370468 2 2.92e-05 G TCCCATTC TAAAAGTAGT chr2R:20661250-20661370 6 2.92e-05 TAATT TCCCATTC AAATGAGCTC chr3R:30049686-30049806 45 2.92e-05 tccaatccaa tcccattc gatcccatcc chr3L:18000282-18000402 107 4.33e-05 TTTTCCTTGT TTCCATTT TTCTAC chr3L:21380372-21380492 60 4.33e-05 GCTATTCTAT TTCCATTT GGAAGTCATC chr3R:18103350-18103470 26 4.33e-05 GCTCCCCGTT TTCCATTT TCAAAGTCCG chr2L:20867490-20867610 59 4.33e-05 CCTTTTCCAT TTCCATTT CCCACAGGGT chr3R:14331632-14331752 69 4.33e-05 TCGTTTTCAT TTCCATTT CATCCAGAAA chr3R:24603476-24603596 105 5.77e-05 TTTCGCTTAA TTCCATTC CATGCCAT chr3R:21713270-21713390 84 5.77e-05 TCGTTTCTGG TTCCATTC CGGAGCGTTC chr2R:8059183-8059303 21 7.24e-05 GCCGAGCTGT TCCCAATT CGAAGCCCCG chr3L:10201864-10201984 17 7.24e-05 GCTACCAACT TCCCAATT TGGCTCAGGA chrX:20779233-20779353 4 7.24e-05 agt tcccaatt ccagagtacc chr3R:26926579-26926699 44 8.72e-05 CCAGTGAATC CCCCATTT TCGTAGGGCC chrX:14688500-14688620 27 8.72e-05 CATATGTTGC CCCCATTT TGATTTATCA chrX:18118635-18118755 8 8.72e-05 TGTTTTT CCCCATTT AAATTTAGAA chr2R:22149103-22149223 100 1.02e-04 AAGATACAAG TCCCATTG TTACAGCCAG chr3R:19891454-19891574 53 1.02e-04 cccgttccta tcccattG GAACCCCACG chr2R:14341364-14341484 19 1.02e-04 acagaagcca tcccatTG CGACGCTGTC chr2R:18816311-18816431 38 1.17e-04 GTATAACGTG TCCCATCT AAAAATCGGC chrX:1283682-1283802 25 1.32e-04 AAATTGCAAA TCCCAATC CCAAACCCAA chr3L:2446354-2446474 10 1.32e-04 gaatccgaa tcccaatc cgtatccgta chr2L:10034420-10034540 113 1.62e-04 ccaacaccaa ttccaatt chr2L:7333794-7333914 9 1.77e-04 cgatccga tcccatcc gatcccatac chr3L:9556860-9556980 48 1.77e-04 CGCAATATAG TCCCATCC ACCCGCTGTT chr3L:18769018-18769138 93 1.91e-04 CACTTCGCTA CTCCATTT AAATGGCTCC chr2L:16707510-16707630 17 1.91e-04 CCTCCTTACG CTCCATTT TCACCTCCGC chr2L:19422791-19422911 64 2.20e-04 CCGAATTAAT TTCCATCT CAACACACCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCATTY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:19849885-19850005 1.4e-05 84_[+2]_28 chr2L:5149962-5150082 1.4e-05 7_[+2]_105 chr2R:23873012-23873132 1.4e-05 66_[+2]_46 chr3R:6828511-6828631 1.4e-05 64_[+2]_48 chrX:5966800-5966920 1.4e-05 55_[+2]_57 chr3R:24009043-24009163 1.4e-05 64_[+2]_48 chr3L:5666555-5666675 1.4e-05 16_[+2]_96 chrX:18683617-18683737 1.4e-05 66_[+2]_46 chr3L:6496730-6496850 2.9e-05 26_[+2]_86 chr3L:641490-641610 2.9e-05 16_[+2]_96 chr3R:10792711-10792831 2.9e-05 6_[+2]_106 chr2R:8060051-8060171 2.9e-05 1_[+2]_111 chr3L:20370348-20370468 2.9e-05 1_[+2]_111 chr2R:20661250-20661370 2.9e-05 5_[+2]_107 chr3R:30049686-30049806 2.9e-05 44_[+2]_68 chr3L:18000282-18000402 4.3e-05 106_[+2]_6 chr3L:21380372-21380492 4.3e-05 59_[+2]_53 chr3R:18103350-18103470 4.3e-05 25_[+2]_87 chr2L:20867490-20867610 4.3e-05 58_[+2]_54 chr3R:14331632-14331752 4.3e-05 68_[+2]_44 chr3R:24603476-24603596 5.8e-05 104_[+2]_8 chr3R:21713270-21713390 5.8e-05 83_[+2]_29 chr2R:8059183-8059303 7.2e-05 20_[+2]_92 chr3L:10201864-10201984 7.2e-05 16_[+2]_96 chrX:20779233-20779353 7.2e-05 3_[+2]_109 chr3R:26926579-26926699 8.7e-05 43_[+2]_69 chrX:14688500-14688620 8.7e-05 26_[+2]_86 chrX:18118635-18118755 8.7e-05 7_[+2]_105 chr2R:22149103-22149223 0.0001 99_[+2]_13 chr3R:19891454-19891574 0.0001 52_[+2]_60 chr2R:14341364-14341484 0.0001 18_[+2]_94 chr2R:18816311-18816431 0.00012 37_[+2]_75 chrX:1283682-1283802 0.00013 24_[+2]_88 chr3L:2446354-2446474 0.00013 9_[+2]_103 chr2L:10034420-10034540 0.00016 112_[+2] chr2L:7333794-7333914 0.00018 8_[+2]_104 chr3L:9556860-9556980 0.00018 47_[+2]_65 chr3L:18769018-18769138 0.00019 92_[+2]_20 chr2L:16707510-16707630 0.00019 16_[+2]_96 chr2L:19422791-19422911 0.00022 63_[+2]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCATTY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCCATTY width=8 seqs=40 chr2L:19849885-19850005 ( 85) TCCCATTT 1 chr2L:5149962-5150082 ( 8) TCCCATTT 1 chr2R:23873012-23873132 ( 67) TCCCATTT 1 chr3R:6828511-6828631 ( 65) TCCCATTT 1 chrX:5966800-5966920 ( 56) TCCCATTT 1 chr3R:24009043-24009163 ( 65) TCCCATTT 1 chr3L:5666555-5666675 ( 17) TCCCATTT 1 chrX:18683617-18683737 ( 67) TCCCATTT 1 chr3L:6496730-6496850 ( 27) TCCCATTC 1 chr3L:641490-641610 ( 17) TCCCATTC 1 chr3R:10792711-10792831 ( 7) TCCCATTC 1 chr2R:8060051-8060171 ( 2) TCCCATTC 1 chr3L:20370348-20370468 ( 2) TCCCATTC 1 chr2R:20661250-20661370 ( 6) TCCCATTC 1 chr3R:30049686-30049806 ( 45) TCCCATTC 1 chr3L:18000282-18000402 ( 107) TTCCATTT 1 chr3L:21380372-21380492 ( 60) TTCCATTT 1 chr3R:18103350-18103470 ( 26) TTCCATTT 1 chr2L:20867490-20867610 ( 59) TTCCATTT 1 chr3R:14331632-14331752 ( 69) TTCCATTT 1 chr3R:24603476-24603596 ( 105) TTCCATTC 1 chr3R:21713270-21713390 ( 84) TTCCATTC 1 chr2R:8059183-8059303 ( 21) TCCCAATT 1 chr3L:10201864-10201984 ( 17) TCCCAATT 1 chrX:20779233-20779353 ( 4) TCCCAATT 1 chr3R:26926579-26926699 ( 44) CCCCATTT 1 chrX:14688500-14688620 ( 27) CCCCATTT 1 chrX:18118635-18118755 ( 8) CCCCATTT 1 chr2R:22149103-22149223 ( 100) TCCCATTG 1 chr3R:19891454-19891574 ( 53) TCCCATTG 1 chr2R:14341364-14341484 ( 19) TCCCATTG 1 chr2R:18816311-18816431 ( 38) TCCCATCT 1 chrX:1283682-1283802 ( 25) TCCCAATC 1 chr3L:2446354-2446474 ( 10) TCCCAATC 1 chr2L:10034420-10034540 ( 113) TTCCAATT 1 chr2L:7333794-7333914 ( 9) TCCCATCC 1 chr3L:9556860-9556980 ( 48) TCCCATCC 1 chr3L:18769018-18769138 ( 93) CTCCATTT 1 chr2L:16707510-16707630 ( 17) CTCCATTT 1 chr2L:19422791-19422911 ( 64) TTCCATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCATTY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9372 E= 1.3e-002 -1197 -101 -1197 183 -1197 152 -1197 16 -1197 199 -1197 -1197 -1197 199 -1197 -1197 200 -1197 -1197 -1197 -74 -1197 -1197 179 -1197 -134 -1197 187 -1197 36 -175 129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCATTY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 1.3e-002 0.000000 0.125000 0.000000 0.875000 0.000000 0.725000 0.000000 0.275000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.150000 0.000000 0.000000 0.850000 0.000000 0.100000 0.000000 0.900000 0.000000 0.325000 0.075000 0.600000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCCATTY MEME-2 regular expression -------------------------------------------------------------------------------- T[CT]CCATT[TC] -------------------------------------------------------------------------------- Time 13.77 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGRATGG MEME-3 width = 8 sites = 58 llr = 452 E-value = 4.5e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGRATGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::2671:: pos.-specific C ::1:1:1: probability G aa74::9a matrix T ::::28:: bits 2.0 * * 1.8 ** * 1.6 ** * 1.4 ** ** Relative 1.2 ** *** Entropy 1.0 ** * *** (11.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGAATGG consensus AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRATGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6938257-6938377 48 1.56e-05 ACCTGGGCGG GGGAATGG AGGGGAATCC chr2L:16707510-16707630 84 1.56e-05 TAAACATTTC GGGAATGG GAAATATTTT chr2L:11228153-11228273 81 1.56e-05 TCGAgggaat gggaatgg agatggggat chr3R:13614954-13615074 72 1.56e-05 gaatgggaat gggaatgg tgtggagtgg chr2R:20945575-20945695 32 1.56e-05 CTTCCTTCCT GGGAATGG AATCCTGCGG chrX:11517500-11517620 67 1.56e-05 ACCGGGCATT GGGAATGG GAATGAATAC chr2R:17160416-17160536 68 1.56e-05 GAGCAGGAGC GGGAATGG CCACTGGAGC chr3L:9690897-9691017 25 3.12e-05 AGGGTGTGTG GGGGATGG TGGAAAAAAG chr2L:7492379-7492499 84 3.12e-05 ATTTCCGGCG GGGGATGG GAAAAAAGCG chr2L:4886814-4886934 35 3.12e-05 CAAGTAGCGT GGGGATGG AGGTTGAAAA chr3L:20441150-20441270 99 3.12e-05 GTGGTGAGGT GGGGATGG GATGGAATAG chr3R:31039022-31039142 50 3.12e-05 ggatagagat ggggatgg gggtggacat chrX:3356435-3356555 16 3.12e-05 ggggtgatgg ggggatgg ggggtggcgg chr3R:16074212-16074332 11 3.12e-05 CTCAGGTGTG GGGGATGG CGGAGGAGCT chr3L:1580319-1580439 14 3.12e-05 TCGAAATGCG GGGGATGG CTGCGATGGA chr3R:4180679-4180799 100 3.12e-05 AGTAGAGAAA GGGGATGG GGTGATCGTG chr3R:18114710-18114830 21 4.67e-05 GAGCCAACAA GGAAATGG GCCACTAAAT chrX:18364136-18364256 85 4.67e-05 CTTTCCCCCG ggaaatgg taatggaaat chrX:2208790-2208910 64 4.67e-05 GTGAGGAACG GGAAATGG GGGGGCAAGG chr2R:9130463-9130583 14 4.67e-05 CGGTGCTCCA GGAAATGG TAAGCGAATG chr2R:21263651-21263771 103 7.75e-05 AGAGGGGTGG GGGATTGG AAAAACAAAC chr2R:6736736-6736856 89 7.75e-05 CACAGGGTTA GGGATTGG GTTGTGATTC chr3L:6704628-6704748 78 7.75e-05 atcgggatgg gggattgg aattgCTCCG chr2R:18816311-18816431 65 9.29e-05 CACCAGGCGG GGGGTTGG GACTACGGAT chr3L:612346-612466 13 9.29e-05 GGGAGCTGAG GGGGTTGG CCAGAAGGGG chr2R:15136567-15136687 55 1.40e-04 aacggatcTC GGGACTGG GAACGGTCGT chr3R:11945922-11946042 1 1.40e-04 . GGGAATCG CAATCCGAGG chr3R:15123127-15123247 68 1.40e-04 CGAAGCCAAA GGGAAAGG CGATGGGATG chr3L:895407-895527 82 1.40e-04 GCCCACGAAA GGGAAAGG GAAACCATTC chr2L:10034420-10034540 31 1.40e-04 TAACCGGACT GGGAATCG AGTCAAACGG chrX:1384338-1384458 61 1.40e-04 CCAATAGACG GGGACTGG CCGGCACGGG chr3R:26615589-26615709 89 1.40e-04 ATTTCGAGAC GGGACTGG GAAAGCCCAG chrX:11556917-11557037 70 1.87e-04 CCCCCTTTTT GGGGATCG GCAGCGAACA chr2R:6742396-6742516 20 1.87e-04 AGGCGGAAAA GGGGAAGG CCCCTTATGA chrX:20238866-20238986 43 1.87e-04 AACTGAATTC GGGGATCG TTGACGCATA chrX:20916574-20916694 20 1.87e-04 GGTGGCACCG GGGGAAGG CATCGTTTGT chr3L:16569633-16569753 111 1.87e-04 GTGAAGAAGT GGGGAAGG GA chr3L:8655657-8655777 34 1.87e-04 ATCTTCGAAA GGGGATCG GTGAGGAGAA chr2R:17165906-17166026 12 1.87e-04 AATGGGAGCA GGGGCTGG CTGGTAAACC chrX:12434765-12434885 93 1.87e-04 GGGGTGAAGA GGGGCTGG AGGCCACGAT chr3R:15928376-15928496 7 2.03e-04 AATTAT GGCAATGG CTGGCCATGG chr2R:21711486-21711606 43 2.03e-04 AACCCGCTTT GGCAATGG TCCCTCGTGC chr3R:14331632-14331752 23 2.03e-04 TTCCACCGAC GGCAATGG CGCAACATAA chr2L:20483742-20483862 39 2.03e-04 AAGTTGCCGA GGCAATGG CAAGCTGATG chr2L:9417638-9417758 14 2.18e-04 ACCATGGCTT GGAATTGG AATTGGAAGC chr2R:8060051-8060171 80 2.18e-04 aatgggagtc ggaattgg aatcggaatt chr2R:11278011-11278131 29 2.18e-04 GATGGCCTCT GGAATTGG TGGTGGGGTG chr3L:11715359-11715479 83 2.49e-04 GGGATATTCC GGAGTTGG GCGAGCGCCA chr3L:5569935-5570055 110 2.49e-04 CGAACGAGGG GGAGTTGG GTG chr3L:6496730-6496850 96 2.96e-04 CTTGTCGATC GGAAATCG CTGGACATTG chr3L:17388677-17388797 50 2.96e-04 AGATTGGATT GGAACTGG GTTCGGTTAC chrX:18118635-18118755 41 2.96e-04 CTTCCAGGGG GGAAATCG AAAAAACGGC chr2L:19406115-19406235 74 2.96e-04 AGAAAATCTG GGAAAAGG TGGGGAATTG chr3R:31603412-31603532 37 3.43e-04 ATGGGAAGTA GGAGAAGG AGGGGGTCTG chr2L:5742590-5742710 112 3.74e-04 ggaagtggga tggaatgg a chrX:1287468-1287588 58 4.36e-04 GTGGGCGGTT GGGGAGGG GTCGGAAGAT chr2R:9859970-9860090 101 4.36e-04 TTTCCCTCTC TGGGATGG TGTCTATCGC chr3L:9433264-9433384 93 4.36e-04 GAGGGGGCGG GGGGAGGG GCATCTCGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRATGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6938257-6938377 1.6e-05 47_[+3]_65 chr2L:16707510-16707630 1.6e-05 83_[+3]_29 chr2L:11228153-11228273 1.6e-05 80_[+3]_32 chr3R:13614954-13615074 1.6e-05 71_[+3]_41 chr2R:20945575-20945695 1.6e-05 31_[+3]_81 chrX:11517500-11517620 1.6e-05 66_[+3]_46 chr2R:17160416-17160536 1.6e-05 67_[+3]_45 chr3L:9690897-9691017 3.1e-05 24_[+3]_88 chr2L:7492379-7492499 3.1e-05 83_[+3]_29 chr2L:4886814-4886934 3.1e-05 34_[+3]_78 chr3L:20441150-20441270 3.1e-05 98_[+3]_14 chr3R:31039022-31039142 3.1e-05 49_[+3]_63 chrX:3356435-3356555 3.1e-05 15_[+3]_97 chr3R:16074212-16074332 3.1e-05 10_[+3]_102 chr3L:1580319-1580439 3.1e-05 13_[+3]_99 chr3R:4180679-4180799 3.1e-05 99_[+3]_13 chr3R:18114710-18114830 4.7e-05 20_[+3]_92 chrX:18364136-18364256 4.7e-05 84_[+3]_28 chrX:2208790-2208910 4.7e-05 63_[+3]_49 chr2R:9130463-9130583 4.7e-05 13_[+3]_99 chr2R:21263651-21263771 7.7e-05 102_[+3]_10 chr2R:6736736-6736856 7.7e-05 88_[+3]_24 chr3L:6704628-6704748 7.7e-05 77_[+3]_35 chr2R:18816311-18816431 9.3e-05 64_[+3]_48 chr3L:612346-612466 9.3e-05 12_[+3]_100 chr2R:15136567-15136687 0.00014 54_[+3]_58 chr3R:11945922-11946042 0.00014 [+3]_112 chr3R:15123127-15123247 0.00014 67_[+3]_45 chr3L:895407-895527 0.00014 81_[+3]_31 chr2L:10034420-10034540 0.00014 30_[+3]_82 chrX:1384338-1384458 0.00014 60_[+3]_52 chr3R:26615589-26615709 0.00014 88_[+3]_24 chrX:11556917-11557037 0.00019 69_[+3]_43 chr2R:6742396-6742516 0.00019 19_[+3]_93 chrX:20238866-20238986 0.00019 42_[+3]_70 chrX:20916574-20916694 0.00019 19_[+3]_93 chr3L:16569633-16569753 0.00019 110_[+3]_2 chr3L:8655657-8655777 0.00019 33_[+3]_79 chr2R:17165906-17166026 0.00019 11_[+3]_101 chrX:12434765-12434885 0.00019 92_[+3]_20 chr3R:15928376-15928496 0.0002 6_[+3]_106 chr2R:21711486-21711606 0.0002 42_[+3]_70 chr3R:14331632-14331752 0.0002 22_[+3]_90 chr2L:20483742-20483862 0.0002 38_[+3]_74 chr2L:9417638-9417758 0.00022 13_[+3]_99 chr2R:8060051-8060171 0.00022 79_[+3]_33 chr2R:11278011-11278131 0.00022 28_[+3]_84 chr3L:11715359-11715479 0.00025 82_[+3]_30 chr3L:5569935-5570055 0.00025 109_[+3]_3 chr3L:6496730-6496850 0.0003 95_[+3]_17 chr3L:17388677-17388797 0.0003 49_[+3]_63 chrX:18118635-18118755 0.0003 40_[+3]_72 chr2L:19406115-19406235 0.0003 73_[+3]_39 chr3R:31603412-31603532 0.00034 36_[+3]_76 chr2L:5742590-5742710 0.00037 111_[+3]_1 chrX:1287468-1287588 0.00044 57_[+3]_55 chr2R:9859970-9860090 0.00044 100_[+3]_12 chr3L:9433264-9433384 0.00044 92_[+3]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRATGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGRATGG width=8 seqs=58 chr2R:6938257-6938377 ( 48) GGGAATGG 1 chr2L:16707510-16707630 ( 84) GGGAATGG 1 chr2L:11228153-11228273 ( 81) GGGAATGG 1 chr3R:13614954-13615074 ( 72) GGGAATGG 1 chr2R:20945575-20945695 ( 32) GGGAATGG 1 chrX:11517500-11517620 ( 67) GGGAATGG 1 chr2R:17160416-17160536 ( 68) GGGAATGG 1 chr3L:9690897-9691017 ( 25) GGGGATGG 1 chr2L:7492379-7492499 ( 84) GGGGATGG 1 chr2L:4886814-4886934 ( 35) GGGGATGG 1 chr3L:20441150-20441270 ( 99) GGGGATGG 1 chr3R:31039022-31039142 ( 50) GGGGATGG 1 chrX:3356435-3356555 ( 16) GGGGATGG 1 chr3R:16074212-16074332 ( 11) GGGGATGG 1 chr3L:1580319-1580439 ( 14) GGGGATGG 1 chr3R:4180679-4180799 ( 100) GGGGATGG 1 chr3R:18114710-18114830 ( 21) GGAAATGG 1 chrX:18364136-18364256 ( 85) GGAAATGG 1 chrX:2208790-2208910 ( 64) GGAAATGG 1 chr2R:9130463-9130583 ( 14) GGAAATGG 1 chr2R:21263651-21263771 ( 103) GGGATTGG 1 chr2R:6736736-6736856 ( 89) GGGATTGG 1 chr3L:6704628-6704748 ( 78) GGGATTGG 1 chr2R:18816311-18816431 ( 65) GGGGTTGG 1 chr3L:612346-612466 ( 13) GGGGTTGG 1 chr2R:15136567-15136687 ( 55) GGGACTGG 1 chr3R:11945922-11946042 ( 1) GGGAATCG 1 chr3R:15123127-15123247 ( 68) GGGAAAGG 1 chr3L:895407-895527 ( 82) GGGAAAGG 1 chr2L:10034420-10034540 ( 31) GGGAATCG 1 chrX:1384338-1384458 ( 61) GGGACTGG 1 chr3R:26615589-26615709 ( 89) GGGACTGG 1 chrX:11556917-11557037 ( 70) GGGGATCG 1 chr2R:6742396-6742516 ( 20) GGGGAAGG 1 chrX:20238866-20238986 ( 43) GGGGATCG 1 chrX:20916574-20916694 ( 20) GGGGAAGG 1 chr3L:16569633-16569753 ( 111) GGGGAAGG 1 chr3L:8655657-8655777 ( 34) GGGGATCG 1 chr2R:17165906-17166026 ( 12) GGGGCTGG 1 chrX:12434765-12434885 ( 93) GGGGCTGG 1 chr3R:15928376-15928496 ( 7) GGCAATGG 1 chr2R:21711486-21711606 ( 43) GGCAATGG 1 chr3R:14331632-14331752 ( 23) GGCAATGG 1 chr2L:20483742-20483862 ( 39) GGCAATGG 1 chr2L:9417638-9417758 ( 14) GGAATTGG 1 chr2R:8060051-8060171 ( 80) GGAATTGG 1 chr2R:11278011-11278131 ( 29) GGAATTGG 1 chr3L:11715359-11715479 ( 83) GGAGTTGG 1 chr3L:5569935-5570055 ( 110) GGAGTTGG 1 chr3L:6496730-6496850 ( 96) GGAAATCG 1 chr3L:17388677-17388797 ( 50) GGAACTGG 1 chrX:18118635-18118755 ( 41) GGAAATCG 1 chr2L:19406115-19406235 ( 74) GGAAAAGG 1 chr3R:31603412-31603532 ( 37) GGAGAAGG 1 chr2L:5742590-5742710 ( 112) TGGAATGG 1 chrX:1287468-1287588 ( 58) GGGGAGGG 1 chr2R:9859970-9860090 ( 101) TGGGATGG 1 chr3L:9433264-9433384 ( 93) GGGGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRATGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1759 E= 4.5e-001 -1250 -1250 194 -283 -1250 -1250 199 -1250 -5 -187 145 -1250 119 -1250 77 -1250 153 -129 -1250 -51 -105 -1250 -287 178 -1250 -106 180 -1250 -1250 -1250 199 -1250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRATGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 4.5e-001 0.000000 0.000000 0.965517 0.034483 0.000000 0.000000 1.000000 0.000000 0.241379 0.068966 0.689655 0.000000 0.568966 0.000000 0.431034 0.000000 0.724138 0.103448 0.000000 0.172414 0.120690 0.000000 0.034483 0.844828 0.000000 0.120690 0.879310 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRATGG MEME-3 regular expression -------------------------------------------------------------------------------- GG[GA][AG]ATGG -------------------------------------------------------------------------------- Time 20.03 secs. ******************************************************************************** ******************************************************************************** MOTIF AAATMAAW MEME-4 width = 8 sites = 42 llr = 355 E-value = 6.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAATMAAW MEME-4 Description -------------------------------------------------------------------------------- Simplified A aaa:67a6 pos.-specific C :::24::: probability G :::1:3:: matrix T :::7:::4 bits 2.0 *** * 1.8 *** * 1.6 *** * 1.4 *** * Relative 1.2 *** * Entropy 1.0 ******** (12.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAATAAAA consensus CG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATMAAW MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9859970-9860090 75 1.50e-05 ATGAGTCCGA AAATAAAA CAGCCACATT chr2L:7492379-7492499 53 1.50e-05 CTCAAACAAA AAATAAAA GTTGCGAAAC chr3L:455241-455361 68 1.50e-05 ACACTCTATA AAATAAAA CTAACGAAAT chr3R:28914585-28914705 55 1.50e-05 CTTTTCACAA AAATAAAA ACGATTCCTC chr3L:8655657-8655777 17 1.50e-05 CCCGAAAATT AAATAAAA TCTTCGAAAG chr2R:23873012-23873132 12 1.50e-05 AAAAAGCGAA AAATAAAA GATCCATGCT chr3L:612346-612466 53 1.50e-05 TCCGCTACAG AAATAAAA TTTGTCACAG chr2R:17107956-17108076 98 2.96e-05 TGGCGCATAT AAATAAAT ATAGGCAAAC chr2R:21263651-21263771 49 2.96e-05 GCACGTTTAA AAATAAAT CGAATGGGGA chr2R:24258807-24258927 105 2.96e-05 CCACAAAAGC AAATAAAT GGGCCAGT chr3R:7658258-7658378 85 2.96e-05 AAAGGCAGGG AAATAAAT CTTGTACGTG chr2R:14341364-14341484 46 2.96e-05 CATCGTTGCC AAATAAAT TGTTTAGCTG chr3L:5569935-5570055 57 2.96e-05 AACAAACGAA AAATAAAT TTAAATTATA chr3R:14331632-14331752 100 2.96e-05 TGGGCCAGCT AAATAAAT GAAAAATCTA chr2R:15137661-15137781 58 4.47e-05 CTTCCCCAAC AAATCAAA GTTGGATGTG chr3L:13881680-13881800 14 4.47e-05 GTTGTAGTTG AAATCAAA CTGGTTACTC chrX:1283682-1283802 55 4.47e-05 ATTTATATGC AAATCAAA TATATTTTTT chr3R:26549728-26549848 112 4.47e-05 TACAAACAAC AAATCAAA A chr2R:8060051-8060171 16 4.47e-05 ATTCAAATTT AAATCAAA AGCTAGTTTA chr3L:465516-465636 48 5.98e-05 AGCCGCAACT AAATAGAA ACTGTGTGCT chrX:11517500-11517620 50 5.98e-05 TGCAAATGCT AAATAGAA CCGGGCATTG chr3R:30176476-30176596 67 5.98e-05 CGATGGCCGA AAATAGAA GAGCCAACGC chr3R:18114710-18114830 35 7.45e-05 ATGGGCCACT AAATCAAT AAAAACAGCA chrX:11556917-11557037 88 8.93e-05 GCAGCGAACA AAATAGAT GAATCGCTCT chr2L:19849885-19850005 49 8.93e-05 ATTCTACCAA AAATAGAT TCCCCAACTG chr3L:895407-895527 37 8.93e-05 TTGGCCACAA AAATAGAT GCCGGTGCGT chr3R:31603412-31603532 87 8.93e-05 CGAACCACGT AAATAGAT CGAGATCGAG chr3L:9690897-9691017 4 1.20e-04 GAA AAATCGAA GGGAGGGTGT chr3R:15928376-15928496 44 1.20e-04 GTCTAGGAAA AAATCGAA TGCCTCTCGA chr3R:5315178-5315298 103 1.20e-04 CTTGGCTGGA AAATCGAA AGTGCCTAGA chr3L:2888295-2888415 39 1.20e-04 AGTAGGAGCC AAACAAAA AGTGTCTTGA chr3R:22756840-22756960 33 1.20e-04 GCAAACATTT AAACAAAA AGAAAGAAAA chr3R:26332073-26332193 54 1.20e-04 CCAAAATCCG AAATCGAA TATGCAAATT chr3R:19625495-19625615 7 1.50e-04 GAGACA AAACAAAT TGATCAGAGG chr3L:119533-119653 37 1.50e-04 TTGAAGGCGT AAACAAAT ATAAATATAG chr2L:1118218-1118338 50 1.65e-04 TGACCGAAAT AAACCAAA CAACATGGGA chr3R:30529586-30529706 76 1.96e-04 GGCCGCATTC AAAGAAAA CTCGTGATAT chr2R:8059183-8059303 52 1.96e-04 GCCGAGAGCA AAAGAAAA CATAAAGCGC chr2R:23086396-23086516 2 2.11e-04 A AAACCAAT ACAATATCCA chr3L:18989696-18989816 67 2.42e-04 AATTGGTCAT AAACCGAA CGGACTTTAG chrX:7708196-7708316 47 2.42e-04 catcccgtca aaaccgaa ccatcaaacc chr3R:24283049-24283169 15 2.73e-04 TATTATCAAG AAAGCAAA TGGGGGGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATMAAW MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9859970-9860090 1.5e-05 74_[+4]_38 chr2L:7492379-7492499 1.5e-05 52_[+4]_60 chr3L:455241-455361 1.5e-05 67_[+4]_45 chr3R:28914585-28914705 1.5e-05 54_[+4]_58 chr3L:8655657-8655777 1.5e-05 16_[+4]_96 chr2R:23873012-23873132 1.5e-05 11_[+4]_101 chr3L:612346-612466 1.5e-05 52_[+4]_60 chr2R:17107956-17108076 3e-05 97_[+4]_15 chr2R:21263651-21263771 3e-05 48_[+4]_64 chr2R:24258807-24258927 3e-05 104_[+4]_8 chr3R:7658258-7658378 3e-05 84_[+4]_28 chr2R:14341364-14341484 3e-05 45_[+4]_67 chr3L:5569935-5570055 3e-05 56_[+4]_56 chr3R:14331632-14331752 3e-05 99_[+4]_13 chr2R:15137661-15137781 4.5e-05 57_[+4]_55 chr3L:13881680-13881800 4.5e-05 13_[+4]_99 chrX:1283682-1283802 4.5e-05 54_[+4]_58 chr3R:26549728-26549848 4.5e-05 111_[+4]_1 chr2R:8060051-8060171 4.5e-05 15_[+4]_97 chr3L:465516-465636 6e-05 47_[+4]_65 chrX:11517500-11517620 6e-05 49_[+4]_63 chr3R:30176476-30176596 6e-05 66_[+4]_46 chr3R:18114710-18114830 7.5e-05 34_[+4]_78 chrX:11556917-11557037 8.9e-05 87_[+4]_25 chr2L:19849885-19850005 8.9e-05 48_[+4]_64 chr3L:895407-895527 8.9e-05 36_[+4]_76 chr3R:31603412-31603532 8.9e-05 86_[+4]_26 chr3L:9690897-9691017 0.00012 3_[+4]_109 chr3R:15928376-15928496 0.00012 43_[+4]_69 chr3R:5315178-5315298 0.00012 102_[+4]_10 chr3L:2888295-2888415 0.00012 38_[+4]_74 chr3R:22756840-22756960 0.00012 32_[+4]_80 chr3R:26332073-26332193 0.00012 53_[+4]_59 chr3R:19625495-19625615 0.00015 6_[+4]_106 chr3L:119533-119653 0.00015 36_[+4]_76 chr2L:1118218-1118338 0.00017 49_[+4]_63 chr3R:30529586-30529706 0.0002 75_[+4]_37 chr2R:8059183-8059303 0.0002 51_[+4]_61 chr2R:23086396-23086516 0.00021 1_[+4]_111 chr3L:18989696-18989816 0.00024 66_[+4]_46 chrX:7708196-7708316 0.00024 46_[+4]_66 chr3R:24283049-24283169 0.00027 14_[+4]_98 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATMAAW MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAATMAAW width=8 seqs=42 chr2R:9859970-9860090 ( 75) AAATAAAA 1 chr2L:7492379-7492499 ( 53) AAATAAAA 1 chr3L:455241-455361 ( 68) AAATAAAA 1 chr3R:28914585-28914705 ( 55) AAATAAAA 1 chr3L:8655657-8655777 ( 17) AAATAAAA 1 chr2R:23873012-23873132 ( 12) AAATAAAA 1 chr3L:612346-612466 ( 53) AAATAAAA 1 chr2R:17107956-17108076 ( 98) AAATAAAT 1 chr2R:21263651-21263771 ( 49) AAATAAAT 1 chr2R:24258807-24258927 ( 105) AAATAAAT 1 chr3R:7658258-7658378 ( 85) AAATAAAT 1 chr2R:14341364-14341484 ( 46) AAATAAAT 1 chr3L:5569935-5570055 ( 57) AAATAAAT 1 chr3R:14331632-14331752 ( 100) AAATAAAT 1 chr2R:15137661-15137781 ( 58) AAATCAAA 1 chr3L:13881680-13881800 ( 14) AAATCAAA 1 chrX:1283682-1283802 ( 55) AAATCAAA 1 chr3R:26549728-26549848 ( 112) AAATCAAA 1 chr2R:8060051-8060171 ( 16) AAATCAAA 1 chr3L:465516-465636 ( 48) AAATAGAA 1 chrX:11517500-11517620 ( 50) AAATAGAA 1 chr3R:30176476-30176596 ( 67) AAATAGAA 1 chr3R:18114710-18114830 ( 35) AAATCAAT 1 chrX:11556917-11557037 ( 88) AAATAGAT 1 chr2L:19849885-19850005 ( 49) AAATAGAT 1 chr3L:895407-895527 ( 37) AAATAGAT 1 chr3R:31603412-31603532 ( 87) AAATAGAT 1 chr3L:9690897-9691017 ( 4) AAATCGAA 1 chr3R:15928376-15928496 ( 44) AAATCGAA 1 chr3R:5315178-5315298 ( 103) AAATCGAA 1 chr3L:2888295-2888415 ( 39) AAACAAAA 1 chr3R:22756840-22756960 ( 33) AAACAAAA 1 chr3R:26332073-26332193 ( 54) AAATCGAA 1 chr3R:19625495-19625615 ( 7) AAACAAAT 1 chr3L:119533-119653 ( 37) AAACAAAT 1 chr2L:1118218-1118338 ( 50) AAACCAAA 1 chr3R:30529586-30529706 ( 76) AAAGAAAA 1 chr2R:8059183-8059303 ( 52) AAAGAAAA 1 chr2R:23086396-23086516 ( 2) AAACCAAT 1 chr3L:18989696-18989816 ( 67) AAACCGAA 1 chrX:7708196-7708316 ( 47) AAACCGAA 1 chr3R:24283049-24283169 ( 15) AAAGCAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATMAAW MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.69676 E= 6.3e-003 200 -1204 -1204 -1204 200 -1204 -1204 -1204 200 -1204 -1204 -1204 -1204 -41 -182 159 136 50 -1204 -1204 146 -1204 30 -1204 200 -1204 -1204 -1204 136 -1204 -1204 54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATMAAW MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 6.3e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.190476 0.071429 0.738095 0.642857 0.357143 0.000000 0.000000 0.690476 0.000000 0.309524 0.000000 1.000000 0.000000 0.000000 0.000000 0.642857 0.000000 0.000000 0.357143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATMAAW MEME-4 regular expression -------------------------------------------------------------------------------- AAAT[AC][AG]A[AT] -------------------------------------------------------------------------------- Time 26.15 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTCCCYC MEME-5 width = 8 sites = 20 llr = 191 E-value = 1.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCCCYC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :3:aa95a probability G :::::1:: matrix T a8a:::6: bits 2.0 * *** * 1.8 * *** * 1.6 * *** * 1.4 * **** * Relative 1.2 ****** * Entropy 1.0 ******** (13.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCCCTC consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCYC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1984646-1984766 59 1.45e-05 GCAACAACTT TTTCCCTC TATTTCAAAA chr3R:30529586-30529706 24 1.45e-05 TTGGTTTTAT TTTCCCTC TAGGTCAGCG chr2R:9859970-9860090 91 1.45e-05 AACAGCCACA TTTCCCTC TCTGGGATGG chr3R:13452413-13452533 38 1.45e-05 TGGCTGCTTA TTTCCCTC AAAATTTATG chr2L:19422791-19422911 28 1.45e-05 ATTTCGGTCA TTTCCCTC CAGAAAAACA chr3L:21040967-21041087 91 1.45e-05 TGTTGCTTAA TTTCCCTC GGTTTCCCCC chrX:11556917-11557037 56 2.95e-05 CGCGCAACGA TTTCCCCC CTTTTTGGGG chr2R:11190015-11190135 62 2.95e-05 CTTTTCGGTT TTTCCCCC ACGCCATTTG chrX:18364136-18364256 76 2.95e-05 TTGTCTGAGC TTTCCCCC Gggaaatggt chr2L:5149962-5150082 63 2.95e-05 GGCCCCTCGT TTTCCCCC CAAAACTATT chr2R:7033352-7033472 35 2.95e-05 TCGCCTTTGA TTTCCCCC TGGCATTTAT chr2L:7675803-7675923 28 2.95e-05 GCAGTTGTTG TTTCCCCC TTCGCCAACT chr2L:6772787-6772907 84 2.95e-05 TCTGGTACGG TTTCCCCC TGGTGATCCC chr2R:13993367-13993487 11 4.44e-05 TGTATCTTTA TCTCCCTC TGGAGCCGTA chr3R:16873451-16873571 92 4.44e-05 CGGGTCGGTC TCTCCCTC CCCACCCCGC chr2L:9558027-9558147 113 4.44e-05 TGACCAACAT TCTCCCTC chr3L:20441150-20441270 48 5.98e-05 CTAGACAAAG TCTCCCCC AGCTGCTAAT chr3R:18395054-18395174 39 5.98e-05 AACTTTAATG TCTCCCCC GGATCCCCGA chr2R:18535964-18536084 101 7.43e-05 GCATACAAAT TTTCCGTC ACCGATTCTA chr3R:30111082-30111202 4 7.43e-05 CAT TTTCCGTC TGCGGGAACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCYC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1984646-1984766 1.5e-05 58_[+5]_54 chr3R:30529586-30529706 1.5e-05 23_[+5]_89 chr2R:9859970-9860090 1.5e-05 90_[+5]_22 chr3R:13452413-13452533 1.5e-05 37_[+5]_75 chr2L:19422791-19422911 1.5e-05 27_[+5]_85 chr3L:21040967-21041087 1.5e-05 90_[+5]_22 chrX:11556917-11557037 2.9e-05 55_[+5]_57 chr2R:11190015-11190135 2.9e-05 61_[+5]_51 chrX:18364136-18364256 2.9e-05 75_[+5]_37 chr2L:5149962-5150082 2.9e-05 62_[+5]_50 chr2R:7033352-7033472 2.9e-05 34_[+5]_78 chr2L:7675803-7675923 2.9e-05 27_[+5]_85 chr2L:6772787-6772907 2.9e-05 83_[+5]_29 chr2R:13993367-13993487 4.4e-05 10_[+5]_102 chr3R:16873451-16873571 4.4e-05 91_[+5]_21 chr2L:9558027-9558147 4.4e-05 112_[+5] chr3L:20441150-20441270 6e-05 47_[+5]_65 chr3R:18395054-18395174 6e-05 38_[+5]_74 chr2R:18535964-18536084 7.4e-05 100_[+5]_12 chr3R:30111082-30111202 7.4e-05 3_[+5]_109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCYC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCCCYC width=8 seqs=20 chrX:1984646-1984766 ( 59) TTTCCCTC 1 chr3R:30529586-30529706 ( 24) TTTCCCTC 1 chr2R:9859970-9860090 ( 91) TTTCCCTC 1 chr3R:13452413-13452533 ( 38) TTTCCCTC 1 chr2L:19422791-19422911 ( 28) TTTCCCTC 1 chr3L:21040967-21041087 ( 91) TTTCCCTC 1 chrX:11556917-11557037 ( 56) TTTCCCCC 1 chr2R:11190015-11190135 ( 62) TTTCCCCC 1 chrX:18364136-18364256 ( 76) TTTCCCCC 1 chr2L:5149962-5150082 ( 63) TTTCCCCC 1 chr2R:7033352-7033472 ( 35) TTTCCCCC 1 chr2L:7675803-7675923 ( 28) TTTCCCCC 1 chr2L:6772787-6772907 ( 84) TTTCCCCC 1 chr2R:13993367-13993487 ( 11) TCTCCCTC 1 chr3R:16873451-16873571 ( 92) TCTCCCTC 1 chr2L:9558027-9558147 ( 113) TCTCCCTC 1 chr3L:20441150-20441270 ( 48) TCTCCCCC 1 chr3R:18395054-18395174 ( 39) TCTCCCCC 1 chr2R:18535964-18536084 ( 101) TTTCCGTC 1 chr3R:30111082-30111202 ( 4) TTTCCGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCYC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4069 E= 1.4e+003 -1097 -1097 -1097 203 -1097 -1 -1097 161 -1097 -1097 -1097 203 -1097 199 -1097 -1097 -1097 199 -1097 -1097 -1097 183 -133 -1097 -1097 83 -1097 116 -1097 199 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCYC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.4e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.900000 0.100000 0.000000 0.000000 0.450000 0.000000 0.550000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCCCYC MEME-5 regular expression -------------------------------------------------------------------------------- T[TC]TCCC[TC]C -------------------------------------------------------------------------------- Time 32.14 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7401127-7401247 1.96e-02 44_[+1(6.85e-05)]_68 chr3L:21667669-21667789 1.97e-02 9_[+1(2.71e-05)]_103 chr2R:17160416-17160536 1.28e-01 67_[+3(1.56e-05)]_45 chrX:9877375-9877495 2.42e-01 120 chr3L:612346-612466 9.58e-03 12_[+3(9.29e-05)]_32_[+4(1.50e-05)]_\ 60 chr2R:6740649-6740769 1.06e-01 120 chr2R:23086396-23086516 5.68e-02 120 chr3R:30049686-30049806 3.19e-03 44_[+2(2.92e-05)]_26_[+1(6.85e-05)]_\ 34 chr2L:20483742-20483862 3.45e-02 120 chrX:12434765-12434885 2.59e-01 120 chr3R:5057398-5057518 6.17e-01 120 chr3R:30176476-30176596 6.66e-02 66_[+4(5.98e-05)]_46 chr2R:11278011-11278131 5.96e-01 120 chr3L:9813478-9813598 7.79e-02 120 chr3R:14331632-14331752 6.07e-06 68_[+2(4.33e-05)]_23_[+4(2.96e-05)]_\ 13 chr2L:6772787-6772907 1.08e-01 83_[+5(2.95e-05)]_29 chr3R:31603412-31603532 7.55e-02 86_[+4(8.93e-05)]_26 chr3R:18395054-18395174 1.60e-01 38_[+5(5.98e-05)]_74 chr3L:1002856-1002976 4.10e-01 120 chr2R:15409627-15409747 8.40e-01 120 chrX:20779233-20779353 7.47e-02 3_[+2(7.24e-05)]_109 chr2R:17165906-17166026 2.33e-01 120 chrX:18683617-18683737 2.66e-02 13_[+2(2.92e-05)]_45_[+2(1.44e-05)]_\ 46 chr2L:14679734-14679854 5.14e-01 120 chr3L:6704628-6704748 2.68e-01 77_[+3(7.75e-05)]_35 chr3L:1354425-1354545 4.26e-02 120 chr2R:16601675-16601795 9.10e-01 120 chr3L:9556860-9556980 8.16e-02 120 chr3R:17066909-17067029 5.26e-01 120 chr2R:15989394-15989514 1.78e-01 120 chr2R:9130463-9130583 2.97e-02 13_[+3(4.67e-05)]_99 chr2L:19406115-19406235 2.52e-01 120 chr2L:6751134-6751254 9.50e-01 120 chr3L:119533-119653 3.68e-02 120 chr3R:26615589-26615709 2.56e-01 120 chr3L:5569935-5570055 1.51e-02 56_[+4(2.96e-05)]_56 chr2L:20867490-20867610 1.91e-02 52_[+2(4.33e-05)]_60 chrX:1384338-1384458 3.11e-01 120 chr2L:10034420-10034540 4.27e-02 120 chr3R:7113233-7113353 3.13e-01 67_[+1(6.85e-05)]_45 chr2L:16789027-16789147 9.63e-01 120 chrX:16616943-16617063 2.97e-01 120 chr2R:14341364-14341484 8.23e-05 45_[+4(2.96e-05)]_22_[+1(1.35e-05)]_\ 37 chr3R:29984151-29984271 6.94e-02 120 chr2R:17166105-17166225 5.68e-01 120 chr2R:20661250-20661370 5.79e-02 5_[+2(2.92e-05)]_107 chr2R:8094387-8094507 6.69e-01 120 chr2L:7675803-7675923 2.62e-02 27_[+5(2.95e-05)]_85 chr3L:2446354-2446474 1.03e-02 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8.59e-04 55_[+2(1.44e-05)]_6_[+5(8.93e-05)]_\ 16_[+5(7.43e-05)]_19 chr3R:30544267-30544387 3.61e-01 120 chr2R:8091631-8091751 9.90e-01 120 chr2L:9551291-9551411 3.20e-01 120 chr2R:8060051-8060171 5.85e-04 1_[+2(2.92e-05)]_6_[+4(4.47e-05)]_\ 97 chr3R:28323816-28323936 8.73e-01 120 chr2R:7742855-7742975 2.21e-01 120 chr3R:6403841-6403961 8.21e-02 49_[+1(8.24e-05)]_63 chr3L:1000696-1000816 2.47e-01 120 chr3R:25447553-25447673 3.66e-01 120 chr3L:4549500-4549620 6.49e-01 120 chr3L:12277880-12278000 3.44e-01 120 chr3R:18103350-18103470 1.02e-02 25_[+2(4.33e-05)]_87 chr2R:21180641-21180761 2.41e-01 120 chr3R:16074212-16074332 1.68e-03 10_[+3(3.12e-05)]_82_[+1(6.85e-05)]_\ 12 chr3R:30106052-30106172 3.99e-01 120 chrX:3356435-3356555 5.52e-02 15_[+3(3.12e-05)]_97 chr3L:1020020-1020140 2.95e-02 61_[+1(1.35e-05)]_51 chr3L:21380372-21380492 3.65e-03 59_[+2(4.33e-05)]_12_[+1(1.35e-05)]_\ 33 chr2L:11170708-11170828 2.11e-01 120 chr2R:20945575-20945695 6.95e-02 31_[+3(1.56e-05)]_81 chr3R:7658258-7658378 1.42e-01 84_[+4(2.96e-05)]_28 chr3R:17781005-17781125 2.06e-01 120 chrX:2208790-2208910 1.72e-01 63_[+3(4.67e-05)]_49 chrX:9876547-9876667 3.94e-01 120 chr3R:21713270-21713390 1.33e-02 24_[+1(6.85e-05)]_51_[+2(5.77e-05)]_\ 29 chrX:20776408-20776528 4.82e-01 120 chr3R:11945922-11946042 3.19e-01 120 chrX:18118635-18118755 2.33e-04 7_[+2(8.72e-05)]_105 chr2R:9819252-9819372 7.77e-01 120 chr3L:10201864-10201984 5.40e-02 16_[+2(7.24e-05)]_96 chrX:18117123-18117243 6.82e-01 120 chr2L:5766150-5766270 7.28e-01 120 chr3R:6828511-6828631 2.90e-03 64_[+2(1.44e-05)]_48 chr3R:31039022-31039142 2.03e-01 49_[+3(3.12e-05)]_63 chr3L:21040967-21041087 1.08e-02 90_[+5(1.45e-05)]_2_[+5(2.95e-05)]_\ 12 chr2R:23935924-23936044 3.08e-01 120 chr2R:11232295-11232415 1.42e-01 5_[+1(1.35e-05)]_107 chr2R:23873012-23873132 7.54e-05 11_[+4(1.50e-05)]_47_[+2(1.44e-05)]_\ 46 chr3R:10792711-10792831 3.20e-02 6_[+2(2.92e-05)]_106 chr2R:25009413-25009533 6.50e-01 120 chr3L:8655657-8655777 7.25e-04 16_[+4(1.50e-05)]_96 chr2L:2727453-2727573 5.88e-01 120 chr3L:2090062-2090182 2.63e-01 120 chr2L:16766532-16766652 1.47e-01 120 chr3R:28914585-28914705 3.16e-03 54_[+4(1.50e-05)]_58 chr2L:2837882-2838002 9.96e-01 120 chr3L:6130704-6130824 5.72e-01 120 chrX:20518344-20518464 5.92e-01 120 chr3R:26549728-26549848 3.56e-02 111_[+4(4.47e-05)]_1 chr2R:9307551-9307671 8.18e-01 120 chr2R:21642022-21642142 1.77e-01 53_[+1(9.64e-05)]_59 chr2L:9417638-9417758 9.12e-02 120 chr3L:7086217-7086337 6.99e-01 120 chr2R:7033352-7033472 4.81e-02 34_[+5(2.95e-05)]_78 chr3R:24283049-24283169 2.89e-01 120 chr2R:24258807-24258927 7.35e-02 104_[+4(2.96e-05)]_8 chr3R:19891454-19891574 1.95e-01 120 chr3R:22756840-22756960 7.60e-02 120 chr2R:24327356-24327476 3.60e-01 120 chr3L:16569633-16569753 3.27e-01 120 chr3R:19625495-19625615 8.24e-02 120 chr3L:17388677-17388797 4.09e-01 120 chr2L:5149962-5150082 3.46e-05 7_[+2(1.44e-05)]_47_[+5(2.95e-05)]_\ 16_[+1(1.35e-05)]_26 chr2R:14288033-14288153 3.01e-01 120 chrX:14688500-14688620 1.57e-03 26_[+2(8.72e-05)]_62_[+1(4.09e-05)]_\ 16 chrX:13604556-13604676 5.51e-01 120 chr3L:18000282-18000402 4.82e-03 106_[+2(4.33e-05)]_6 chr3L:8654935-8655055 6.12e-01 120 chr2R:22149103-22149223 6.60e-02 120 chr2R:21263651-21263771 7.75e-03 48_[+4(2.96e-05)]_46_[+3(7.75e-05)]_\ 10 chr2R:8059183-8059303 1.40e-02 20_[+2(7.24e-05)]_92 chr3R:22568668-22568788 8.45e-01 120 chrX:1283682-1283802 2.93e-03 54_[+4(4.47e-05)]_58 chr3L:642267-642387 4.54e-01 120 chr3L:16151900-16152020 5.78e-02 93_[+1(1.35e-05)]_19 chr2L:19849885-19850005 3.17e-04 48_[+4(8.93e-05)]_28_[+2(1.44e-05)]_\ 28 chr2R:23730389-23730509 3.11e-01 120 chr2L:1122616-1122736 5.51e-01 120 chr3L:22380754-22380874 5.55e-02 120 chr3L:13881680-13881800 6.21e-02 13_[+4(4.47e-05)]_99 chr3L:9433264-9433384 8.89e-04 16_[+1(1.35e-05)]_96 chr3L:3733476-3733596 3.12e-02 32_[+1(6.85e-05)]_80 chrX:20916574-20916694 2.12e-01 120 chr2R:12604463-12604583 1.98e-02 31_[+1(9.64e-05)]_81 chr3R:13614954-13615074 8.42e-02 59_[+3(1.56e-05)]_4_[+3(1.56e-05)]_\ 14_[+3(1.56e-05)]_19 chr2R:17107956-17108076 1.63e-01 97_[+4(2.96e-05)]_15 chr2L:9560331-9560451 9.27e-01 120 chr3L:641490-641610 2.28e-02 16_[+2(2.92e-05)]_96 chr3R:23662908-23663028 8.34e-01 120 chr2R:6519818-6519938 3.30e-01 120 chr2L:20483942-20484062 7.25e-01 120 chr2R:8058517-8058637 8.85e-01 120 chr2L:7333794-7333914 2.43e-01 120 chr3R:26106282-26106402 1.33e-01 120 chr3L:15953091-15953211 8.34e-01 120 chr2R:5984222-5984342 4.85e-01 120 chrX:1284348-1284468 7.39e-01 120 chr3R:31125862-31125982 7.64e-01 120 chr3L:20441150-20441270 4.39e-03 47_[+5(5.98e-05)]_43_[+3(3.12e-05)]_\ 14 chr2L:11228153-11228273 5.30e-02 74_[+3(1.56e-05)]_10_[+3(3.12e-05)]_\ 20 chr3L:2888295-2888415 6.04e-02 120 chr2R:19268648-19268768 1.90e-01 120 chr3R:4250092-4250212 7.63e-01 120 chr2R:8062629-8062749 9.36e-01 120 chr2L:4886814-4886934 3.23e-02 34_[+3(3.12e-05)]_78 chr2R:20665084-20665204 7.48e-01 120 chr3L:20466704-20466824 6.46e-01 120 chrX:1383490-1383610 6.29e-02 120 chrX:7708196-7708316 2.92e-01 120 chr2L:19422791-19422911 2.31e-03 27_[+5(1.45e-05)]_85 chr3R:26926579-26926699 2.33e-02 43_[+2(8.72e-05)]_69 chrX:18364136-18364256 8.26e-03 75_[+5(2.95e-05)]_1_[+3(4.67e-05)]_\ 4_[+3(4.67e-05)]_16 chr2R:18816311-18816431 9.76e-03 64_[+3(9.29e-05)]_48 chr3R:13452413-13452533 4.49e-02 37_[+5(1.45e-05)]_75 chr2L:5742590-5742710 4.58e-01 120 chr2R:15136567-15136687 4.83e-01 120 chr2R:8061508-8061628 7.69e-01 120 chrX:20779921-20780041 1.89e-02 19_[+1(4.09e-05)]_93 chr3L:8080903-8081023 7.64e-01 120 chr3L:6608986-6609106 6.85e-01 120 chr3L:465516-465636 2.12e-03 27_[+1(1.35e-05)]_12_[+4(5.98e-05)]_\ 65 chr3R:5315178-5315298 2.87e-01 120 chr3R:11451372-11451492 4.44e-01 120 chr3L:13420384-13420504 3.16e-01 120 chr2R:11190015-11190135 3.31e-02 61_[+5(2.95e-05)]_51 chr3R:18114710-18114830 4.56e-03 20_[+3(4.67e-05)]_6_[+4(7.45e-05)]_\ 78 chr3L:455241-455361 3.50e-02 67_[+4(1.50e-05)]_45 chr3R:16873451-16873571 7.95e-02 91_[+5(4.44e-05)]_21 chr2L:7492379-7492499 7.21e-04 52_[+4(1.50e-05)]_23_[+3(3.12e-05)]_\ 29 chr2R:15137661-15137781 2.29e-02 57_[+4(4.47e-05)]_55 chr2R:21711486-21711606 1.49e-03 21_[+1(1.35e-05)]_91 chr2L:20484730-20484850 3.89e-02 37_[+1(6.85e-05)]_75 chr2R:9859970-9860090 2.62e-05 74_[+4(1.50e-05)]_8_[+5(1.45e-05)]_\ 22 chr3R:5055731-5055851 8.25e-01 120 chr3R:9477247-9477367 9.30e-03 91_[+1(1.35e-05)]_21 chr2R:13224393-13224513 2.91e-02 45_[+1(1.35e-05)]_67 chr3R:30529586-30529706 1.80e-04 23_[+5(1.45e-05)]_89 chr3R:7990451-7990571 5.55e-01 120 chr2L:16707510-16707630 2.56e-04 83_[+3(1.56e-05)]_29 chr2L:14851731-14851851 9.35e-01 120 chr3R:4127639-4127759 4.78e-01 120 chr3R:9878339-9878459 8.45e-01 120 chr3R:15928376-15928496 6.87e-02 120 chr3L:6496730-6496850 2.40e-03 26_[+2(2.92e-05)]_86 chrX:20238866-20238986 2.44e-02 120 chr3L:17045846-17045966 6.22e-03 112_[+1(2.71e-05)] chr3L:18989696-18989816 1.07e-01 120 chr2R:5496577-5496697 9.37e-01 120 chr3R:13998769-13998889 8.66e-01 120 chr2R:24971877-24971997 8.81e-01 120 chrX:12670745-12670865 8.76e-02 120 chr2L:1118218-1118338 4.95e-02 120 chr3L:9690897-9691017 1.62e-02 24_[+3(3.12e-05)]_88 chr3R:13453367-13453487 1.36e-01 120 chr3R:19826826-19826946 2.67e-01 120 chr2L:136876-136996 3.22e-01 120 chr3R:30111082-30111202 1.33e-02 3_[+5(7.43e-05)]_109 chr2R:18344061-18344181 7.54e-02 120 chr2R:23057689-23057809 1.03e-01 120 chr2R:6742396-6742516 4.09e-01 120 chr2L:8879736-8879856 4.16e-01 120 chr3R:24603476-24603596 3.20e-03 16_[+1(4.09e-05)]_80_[+2(5.77e-05)]_\ 8 chr2L:6471967-6472087 9.41e-01 120 chr2R:6938257-6938377 5.34e-02 47_[+3(1.56e-05)]_65 chr3R:18468793-18468913 3.41e-01 120 chr2R:18535964-18536084 8.02e-02 100_[+5(7.43e-05)]_12 chr3R:13273621-13273741 2.00e-01 120 chr2R:13993367-13993487 2.91e-02 10_[+5(4.44e-05)]_102 chr3L:18769018-18769138 8.30e-02 120 chr2L:3417651-3417771 6.60e-01 120 chrX:11556917-11557037 1.57e-04 37_[+5(5.98e-05)]_10_[+5(2.95e-05)]_\ 24_[+4(8.93e-05)]_25 chr3L:7909552-7909672 1.97e-03 120 chr2R:22200979-22201099 9.30e-01 120 chrX:1287468-1287588 3.64e-02 120 chr2R:20773487-20773607 5.00e-01 120 chr3L:697894-698014 2.10e-01 120 chrX:1984646-1984766 4.49e-02 58_[+5(1.45e-05)]_54 chr3R:18103559-18103679 7.81e-01 120 chr3L:11715359-11715479 3.25e-01 120 chr3L:19566223-19566343 6.20e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************