******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12768.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:24954706-24954826 1.0000 120 chrX:18369895-18370015 1.0000 120 chr2L:1124404-1124524 1.0000 120 chr3R:13666100-13666220 1.0000 120 chr2L:6341905-6342025 1.0000 120 chr3R:8354077-8354197 1.0000 120 chr3L:17933171-17933291 1.0000 120 chr2L:19900333-19900453 1.0000 120 chr3L:7790342-7790462 1.0000 120 chr2R:9857685-9857805 1.0000 120 chr2R:10773485-10773605 1.0000 120 chr2R:21647303-21647423 1.0000 120 chr2L:8202717-8202837 1.0000 120 chrX:2684891-2685011 1.0000 120 chr3L:17584824-17584944 1.0000 120 chr3R:4655015-4655135 1.0000 120 chr2L:20809363-20809483 1.0000 120 chr3L:7826898-7827018 1.0000 120 chr2L:10514699-10514819 1.0000 120 chr3R:8087420-8087540 1.0000 120 chr2L:7967782-7967902 1.0000 120 chr3L:11629488-11629608 1.0000 120 chr3L:12073993-12074113 1.0000 120 chr3R:20570300-20570420 1.0000 120 chr3L:18832069-18832189 1.0000 120 chr2R:9856711-9856831 1.0000 120 chr2R:16819308-16819428 1.0000 120 chr2L:487881-488001 1.0000 120 chr3L:20389655-20389775 1.0000 120 chr3L:17008051-17008171 1.0000 120 chr3R:9946572-9946692 1.0000 120 chr3L:19946988-19947108 1.0000 120 chr2L:7028568-7028688 1.0000 120 chrX:4576109-4576229 1.0000 120 chr2R:8676645-8676765 1.0000 120 chr3L:5643002-5643122 1.0000 120 chr2L:3363354-3363474 1.0000 120 chr3L:15976922-15977042 1.0000 120 chr2R:21084156-21084276 1.0000 120 chr3R:9951161-9951281 1.0000 120 chr2L:10399749-10399869 1.0000 120 chr2R:7533893-7534013 1.0000 120 chr3R:9433414-9433534 1.0000 120 chr2L:7951964-7952084 1.0000 120 chr3R:19575855-19575975 1.0000 120 chr3R:6583382-6583502 1.0000 120 chr3L:22909404-22909524 1.0000 120 chr2L:6475345-6475465 1.0000 120 chr2R:17084966-17085086 1.0000 120 chr3R:18739622-18739742 1.0000 120 chr3R:29756370-29756490 1.0000 120 chr3R:13700319-13700439 1.0000 120 chr2R:8145491-8145611 1.0000 120 chr2R:7257571-7257691 1.0000 120 chr3R:26890294-26890414 1.0000 120 chr3L:11272427-11272547 1.0000 120 chr3L:22948314-22948434 1.0000 120 chr2L:7948921-7949041 1.0000 120 chr3R:19853230-19853350 1.0000 120 chr2L:2861267-2861387 1.0000 120 chr3L:17000458-17000578 1.0000 120 chr3R:14070225-14070345 1.0000 120 chr3L:21502149-21502269 1.0000 120 chr3R:26247914-26248034 1.0000 120 chr3R:30107884-30108004 1.0000 120 chr3R:15407238-15407358 1.0000 120 chr2R:23672680-23672800 1.0000 120 chr3R:12676465-12676585 1.0000 120 chr3R:31672780-31672900 1.0000 120 chr2R:24747963-24748083 1.0000 120 chr2R:17709180-17709300 1.0000 120 chr2R:8671420-8671540 1.0000 120 chr3L:20838100-20838220 1.0000 120 chrX:3675691-3675811 1.0000 120 chr3R:12441334-12441454 1.0000 120 chr2R:12186221-12186341 1.0000 120 chr3R:10086149-10086269 1.0000 120 chr2L:13802227-13802347 1.0000 120 chr2R:2567082-2567202 1.0000 120 chr3R:20546754-20546874 1.0000 120 chr3L:22948703-22948823 1.0000 120 chr2L:12528133-12528253 1.0000 120 chr3L:17603909-17604029 1.0000 120 chr2R:9835878-9835998 1.0000 120 chr2L:13803436-13803556 1.0000 120 chr3L:12410029-12410149 1.0000 120 chr2R:11216434-11216554 1.0000 120 chr2R:9137347-9137467 1.0000 120 chr2L:8356111-8356231 1.0000 120 chr2L:9780936-9781056 1.0000 120 chr3R:9420707-9420827 1.0000 120 chr2L:19442598-19442718 1.0000 120 chr2R:9135122-9135242 1.0000 120 chr2L:8204515-8204635 1.0000 120 chr3R:11757621-11757741 1.0000 120 chr3L:4068553-4068673 1.0000 120 chr2R:9190864-9190984 1.0000 120 chr2L:12530649-12530769 1.0000 120 chr3R:28682203-28682323 1.0000 120 chr2L:16317271-16317391 1.0000 120 chr2R:13537352-13537472 1.0000 120 chr3R:4706208-4706328 1.0000 120 chr2R:14242699-14242819 1.0000 120 chr2L:11058529-11058649 1.0000 120 chr2L:8371659-8371779 1.0000 120 chr2R:17469827-17469947 1.0000 120 chr3R:15225112-15225232 1.0000 120 chr3R:20790548-20790668 1.0000 120 chr2R:10040134-10040254 1.0000 120 chr2L:8325320-8325440 1.0000 120 chr2R:15672555-15672675 1.0000 120 chr3R:27706224-27706344 1.0000 120 chrX:6357723-6357843 1.0000 120 chr2R:10275726-10275846 1.0000 120 chr3R:9948690-9948810 1.0000 120 chr2R:21604327-21604447 1.0000 120 chr2L:20793234-20793354 1.0000 120 chr2L:250336-250456 1.0000 120 chr2R:24980713-24980833 1.0000 120 chr3L:4415459-4415579 1.0000 120 chr3L:9096531-9096651 1.0000 120 chr2L:12001314-12001434 1.0000 120 chr3L:1000750-1000870 1.0000 120 chr3R:25308225-25308345 1.0000 120 chr3R:27292278-27292398 1.0000 120 chr3R:15410917-15411037 1.0000 120 chrX:16633660-16633780 1.0000 120 chr3L:11264157-11264277 1.0000 120 chr2L:20674755-20674875 1.0000 120 chr3R:23944106-23944226 1.0000 120 chr2R:16131943-16132063 1.0000 120 chr3R:7076727-7076847 1.0000 120 chr2R:12438862-12438982 1.0000 120 chr3R:18246215-18246335 1.0000 120 chr3R:20839045-20839165 1.0000 120 chr2L:8100163-8100283 1.0000 120 chr2R:16138968-16139088 1.0000 120 chr2L:16653683-16653803 1.0000 120 chr3R:10393228-10393348 1.0000 120 chr3R:10080570-10080690 1.0000 120 chr2R:19445678-19445798 1.0000 120 chr3L:7834007-7834127 1.0000 120 chr3L:7829768-7829888 1.0000 120 chr3R:14711869-14711989 1.0000 120 chr2L:6514077-6514197 1.0000 120 chr3R:14059843-14059963 1.0000 120 chr2R:9577367-9577487 1.0000 120 chr2L:309938-310058 1.0000 120 chr3R:18578104-18578224 1.0000 120 chr3R:8821751-8821871 1.0000 120 chr2L:9703159-9703279 1.0000 120 chr2R:22373248-22373368 1.0000 120 chr3L:3772381-3772501 1.0000 120 chr3R:23139420-23139540 1.0000 120 chr2R:16180071-16180191 1.0000 120 chr2L:8326527-8326647 1.0000 120 chr2R:24131419-24131539 1.0000 120 chr2L:2228307-2228427 1.0000 120 chr3R:9931215-9931335 1.0000 120 chr3L:17956846-17956966 1.0000 120 chr3R:8654285-8654405 1.0000 120 chr2R:7472320-7472440 1.0000 120 chr3L:12411447-12411567 1.0000 120 chr3L:11593909-11594029 1.0000 120 chr3R:24566874-24566994 1.0000 120 chr3R:12688242-12688362 1.0000 120 chr2R:21618995-21619115 1.0000 120 chr2L:120569-120689 1.0000 120 chr3R:24626736-24626856 1.0000 120 chr3R:16340747-16340867 1.0000 120 chr3R:32050811-32050931 1.0000 120 chr3R:23993543-23993663 1.0000 120 chr3R:7947503-7947623 1.0000 120 chr3R:17615891-17616011 1.0000 120 chr2L:18713832-18713952 1.0000 120 chr2R:22571951-22572071 1.0000 120 chr3R:10380217-10380337 1.0000 120 chr3R:17678579-17678699 1.0000 120 chrX:1031436-1031556 1.0000 120 chr3R:24016429-24016549 1.0000 120 chr2L:1117135-1117255 1.0000 120 chr3L:7836740-7836860 1.0000 120 chr2R:18755010-18755130 1.0000 120 chr3R:23384876-23384996 1.0000 120 chr2L:6447687-6447807 1.0000 120 chr3R:15402770-15402890 1.0000 120 chr2L:125476-125596 1.0000 120 chr2R:7256415-7256535 1.0000 120 chr3R:9931434-9931554 1.0000 120 chr2R:10278985-10279105 1.0000 120 chr3R:26260996-26261116 1.0000 120 chr2R:18515675-18515795 1.0000 120 chrX:13814213-13814333 1.0000 120 chr3R:25277493-25277613 1.0000 120 chr3L:11531414-11531534 1.0000 120 chr2L:18983134-18983254 1.0000 120 chr3R:9950064-9950184 1.0000 120 chr2R:7109374-7109494 1.0000 120 chr3R:14366066-14366186 1.0000 120 chr3L:12050062-12050182 1.0000 120 chr3R:9969447-9969567 1.0000 120 chr4:1318937-1319057 1.0000 120 chr2R:9554762-9554882 1.0000 120 chr2L:18120236-18120356 1.0000 120 chr3L:12517688-12517808 1.0000 120 chr3L:753995-754115 1.0000 120 chr2R:7726558-7726678 1.0000 120 chr3R:26987602-26987722 1.0000 120 chr2L:843949-844069 1.0000 120 chr3L:1336950-1337070 1.0000 120 chr2R:6870371-6870491 1.0000 120 chr2L:18509299-18509419 1.0000 120 chr3L:17918188-17918308 1.0000 120 chr3R:19135099-19135219 1.0000 120 chrX:13322570-13322690 1.0000 120 chrX:2108766-2108886 1.0000 120 chr3L:18044537-18044657 1.0000 120 chr3R:11762640-11762760 1.0000 120 chr3L:16234152-16234272 1.0000 120 chr3L:17401030-17401150 1.0000 120 chr2L:1086474-1086594 1.0000 120 chr2R:25285442-25285562 1.0000 120 chrX:11821995-11822115 1.0000 120 chr3R:21582838-21582958 1.0000 120 chr2L:7726450-7726570 1.0000 120 chr3R:21180656-21180776 1.0000 120 chr3L:5180312-5180432 1.0000 120 chr3R:21587594-21587714 1.0000 120 chr3L:16112041-16112161 1.0000 120 chr2L:9526632-9526752 1.0000 120 chr2R:12590153-12590273 1.0000 120 chr3L:12507686-12507806 1.0000 120 chr3L:7833300-7833420 1.0000 120 chr3L:22887145-22887265 1.0000 120 chr2L:9949315-9949435 1.0000 120 chr2R:19461562-19461682 1.0000 120 chr2R:11592981-11593101 1.0000 120 chr2R:10473898-10474018 1.0000 120 chr3L:9362014-9362134 1.0000 120 chr2L:8033955-8034075 1.0000 120 chr2L:20674958-20675078 1.0000 120 chr3R:26464538-26464658 1.0000 120 chr3L:20317128-20317248 1.0000 120 chrX:13840218-13840338 1.0000 120 chr2L:18457078-18457198 1.0000 120 chr2R:7775067-7775187 1.0000 120 chr2R:17584029-17584149 1.0000 120 chr3R:26260010-26260130 1.0000 120 chr2R:18529890-18530010 1.0000 120 chr3R:30308133-30308253 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG12768/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12768.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.263 C 0.237 G 0.237 T 0.264 Background letter frequencies (from file dataset with add-one prior applied): A 0.263 C 0.237 G 0.237 T 0.264 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AAAGTGCA MEME-1 width = 8 sites = 41 llr = 356 E-value = 3.5e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAGTGCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 79a::::8 pos.-specific C 31:::3a: probability G :::a:7:2 matrix T ::::a::: bits 2.1 * 1.9 *** * 1.7 *** * 1.5 *** * Relative 1.2 ****** Entropy 1.0 ******** (12.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAGTGCA consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGTGCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:18457078-18457198 69 1.68e-05 CAACAACAAC AAAGtgca aattgcactg chr2R:17469827-17469947 57 1.68e-05 CTGAAAAGTG AAAGTGCA GCATGGGTCG chr2L:11058529-11058649 72 1.68e-05 GGACGGGGCG AAAGTGCA GCAGACATAT chr3R:28682203-28682323 30 1.68e-05 GACAAAGTGT AAAGTGCA AAGCTAGcag chr2R:9190864-9190984 61 1.68e-05 AGCGGCGAGT AAAGTGCA ACAATAATCT chr3R:20570300-20570420 27 1.68e-05 TGGGCGGTCG AAAGTGCA TGTATCGCAC chr3L:12073993-12074113 113 1.68e-05 TATAAGTCGC AAAGTGCA chr3R:4655015-4655135 18 1.68e-05 CTTGGTGGGC AAAGTGCA GATTAAACGC chr3L:7790342-7790462 6 1.68e-05 GCGAT AAAGTGCA ACACGAGCGA chr2R:16180071-16180191 41 3.20e-05 CAAGCAAAGG CAAGTGCA AGGTCTGTTT chr3R:8821751-8821871 35 3.20e-05 CCCATATAAA CAAGTGCA CTTTATGTTT chr3R:9948690-9948810 2 3.20e-05 C CAAGTGCA AATGCAAGCT chr2L:19442598-19442718 43 3.20e-05 GTTGGGCAGC CAAGTGCA ATTAGCTAAG chr3R:10086149-10086269 64 3.20e-05 AATCAAGATC CAAGTGCA ATTTCCCGGC chr2L:10399749-10399869 79 3.20e-05 ACAAATGGTT CAAGTGCA TCAGGTAATG chr3R:26464538-26464658 52 4.88e-05 CCGGCTGGCC AAAGTCCA CGCGGCGAAT chr2R:14242699-14242819 60 4.88e-05 CAAGTAGTTC AAAGTCCA AGCGCAGCAG chr3R:19853230-19853350 59 4.88e-05 GTCCAAGTTA AAAGTCCA AACAGCAGCT chr2R:8145491-8145611 65 4.88e-05 AGTCACGATC AAAGTCCA GGGAATTTTT chrX:4576109-4576229 35 4.88e-05 TTCCATTTTC AAAGTcca gaccccagac chr3L:17008051-17008171 56 4.88e-05 TACTCATGTG AAAGTCCA GCGATCGATC chr2R:9856711-9856831 73 4.88e-05 TCTTCTGACC AAAGTCCA CCGCTTGGTA chr3R:8087420-8087540 68 4.88e-05 AGGTCCGATC AAAGTCCA GTGATTTGAA chr2L:8202717-8202837 2 4.88e-05 C AAAGTCCA AGAAATTCCA chr2L:18983134-18983254 41 6.39e-05 ACCCCATTGT AAAGTGCG TACGAGTACG chr3R:10380217-10380337 105 6.39e-05 CTGTAGTTCC AAAGTGCG GAGAGTTA chr2L:12001314-12001434 38 6.39e-05 AAAACGGCTC AAAGTGCG ACGGCCAATG chr2R:9857685-9857805 27 6.39e-05 AAACCTACTT AAAGTGCG ATGGAAACTA chr2L:1124404-1124524 67 6.39e-05 AACCACAGGC AAAGTGCG AAATCCCGAG chr3R:18246215-18246335 67 9.42e-05 GAGAGGGCAG ACAGTGCA AGTCAGCAAA chr2R:21647303-21647423 64 9.42e-05 ATCAGTGGGC ACAGTGCA CTATGGATTG chr3R:13666100-13666220 2 9.42e-05 C CAAGTCCA AGTCAAAGTC chr2L:6341905-6342025 74 1.08e-04 ACCGCTAAGA CAAGTGCG GAAGCGGACG chr3L:22887145-22887265 14 1.22e-04 ATTGCTTGCT CCAGTGCA GTTATCTCTT chr3L:5180312-5180432 75 1.22e-04 AAATGTGTCC CCAGTGCA AACAAAACGC chr3R:10080570-10080690 8 1.22e-04 TGTCCGT CCAGTGCA ACGACCAACA chr3R:14070225-14070345 35 1.22e-04 GTGCAATTGA CCAGTGCA GCTCTGCAAA chr2R:15672555-15672675 2 1.37e-04 C AAAGTCCG GTGATTTGAG chr3L:5643002-5643122 71 1.98e-04 TATGTATGGG AAATTGCA ATTTTGAGCT chrX:16633660-16633780 47 2.27e-04 AGGGGAGTCC AAAGTGCC AAAGTAGTGG chr3L:17401030-17401150 108 2.56e-04 TGTGCCTTTG CAATTGCA CCAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGTGCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:18457078-18457198 1.7e-05 68_[+1]_44 chr2R:17469827-17469947 1.7e-05 56_[+1]_56 chr2L:11058529-11058649 1.7e-05 71_[+1]_41 chr3R:28682203-28682323 1.7e-05 29_[+1]_83 chr2R:9190864-9190984 1.7e-05 60_[+1]_52 chr3R:20570300-20570420 1.7e-05 26_[+1]_86 chr3L:12073993-12074113 1.7e-05 112_[+1] chr3R:4655015-4655135 1.7e-05 17_[+1]_95 chr3L:7790342-7790462 1.7e-05 5_[+1]_107 chr2R:16180071-16180191 3.2e-05 40_[+1]_72 chr3R:8821751-8821871 3.2e-05 34_[+1]_78 chr3R:9948690-9948810 3.2e-05 1_[+1]_111 chr2L:19442598-19442718 3.2e-05 42_[+1]_70 chr3R:10086149-10086269 3.2e-05 63_[+1]_49 chr2L:10399749-10399869 3.2e-05 78_[+1]_34 chr3R:26464538-26464658 4.9e-05 51_[+1]_61 chr2R:14242699-14242819 4.9e-05 59_[+1]_53 chr3R:19853230-19853350 4.9e-05 58_[+1]_54 chr2R:8145491-8145611 4.9e-05 64_[+1]_48 chrX:4576109-4576229 4.9e-05 34_[+1]_78 chr3L:17008051-17008171 4.9e-05 55_[+1]_57 chr2R:9856711-9856831 4.9e-05 72_[+1]_40 chr3R:8087420-8087540 4.9e-05 67_[+1]_45 chr2L:8202717-8202837 4.9e-05 1_[+1]_111 chr2L:18983134-18983254 6.4e-05 40_[+1]_72 chr3R:10380217-10380337 6.4e-05 104_[+1]_8 chr2L:12001314-12001434 6.4e-05 37_[+1]_75 chr2R:9857685-9857805 6.4e-05 26_[+1]_86 chr2L:1124404-1124524 6.4e-05 66_[+1]_46 chr3R:18246215-18246335 9.4e-05 66_[+1]_46 chr2R:21647303-21647423 9.4e-05 63_[+1]_49 chr3R:13666100-13666220 9.4e-05 1_[+1]_111 chr2L:6341905-6342025 0.00011 73_[+1]_39 chr3L:22887145-22887265 0.00012 13_[+1]_99 chr3L:5180312-5180432 0.00012 74_[+1]_38 chr3R:10080570-10080690 0.00012 7_[+1]_105 chr3R:14070225-14070345 0.00012 34_[+1]_78 chr2R:15672555-15672675 0.00014 1_[+1]_111 chr3L:5643002-5643122 0.0002 70_[+1]_42 chrX:16633660-16633780 0.00023 46_[+1]_66 chr3L:17401030-17401150 0.00026 107_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGTGCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAGTGCA width=8 seqs=41 chr2L:18457078-18457198 ( 69) AAAGTGCA 1 chr2R:17469827-17469947 ( 57) AAAGTGCA 1 chr2L:11058529-11058649 ( 72) AAAGTGCA 1 chr3R:28682203-28682323 ( 30) AAAGTGCA 1 chr2R:9190864-9190984 ( 61) AAAGTGCA 1 chr3R:20570300-20570420 ( 27) AAAGTGCA 1 chr3L:12073993-12074113 ( 113) AAAGTGCA 1 chr3R:4655015-4655135 ( 18) AAAGTGCA 1 chr3L:7790342-7790462 ( 6) AAAGTGCA 1 chr2R:16180071-16180191 ( 41) CAAGTGCA 1 chr3R:8821751-8821871 ( 35) CAAGTGCA 1 chr3R:9948690-9948810 ( 2) CAAGTGCA 1 chr2L:19442598-19442718 ( 43) CAAGTGCA 1 chr3R:10086149-10086269 ( 64) CAAGTGCA 1 chr2L:10399749-10399869 ( 79) CAAGTGCA 1 chr3R:26464538-26464658 ( 52) AAAGTCCA 1 chr2R:14242699-14242819 ( 60) AAAGTCCA 1 chr3R:19853230-19853350 ( 59) AAAGTCCA 1 chr2R:8145491-8145611 ( 65) AAAGTCCA 1 chrX:4576109-4576229 ( 35) AAAGTCCA 1 chr3L:17008051-17008171 ( 56) AAAGTCCA 1 chr2R:9856711-9856831 ( 73) AAAGTCCA 1 chr3R:8087420-8087540 ( 68) AAAGTCCA 1 chr2L:8202717-8202837 ( 2) AAAGTCCA 1 chr2L:18983134-18983254 ( 41) AAAGTGCG 1 chr3R:10380217-10380337 ( 105) AAAGTGCG 1 chr2L:12001314-12001434 ( 38) AAAGTGCG 1 chr2R:9857685-9857805 ( 27) AAAGTGCG 1 chr2L:1124404-1124524 ( 67) AAAGTGCG 1 chr3R:18246215-18246335 ( 67) ACAGTGCA 1 chr2R:21647303-21647423 ( 64) ACAGTGCA 1 chr3R:13666100-13666220 ( 2) CAAGTCCA 1 chr2L:6341905-6342025 ( 74) CAAGTGCG 1 chr3L:22887145-22887265 ( 14) CCAGTGCA 1 chr3L:5180312-5180432 ( 75) CCAGTGCA 1 chr3R:10080570-10080690 ( 8) CCAGTGCA 1 chr3R:14070225-14070345 ( 35) CCAGTGCA 1 chr2R:15672555-15672675 ( 2) AAAGTCCG 1 chr3L:5643002-5643122 ( 71) AAATTGCA 1 chrX:16633660-16633780 ( 47) AAAGTGCC 1 chr3L:17401030-17401150 ( 108) CAATTGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGTGCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3926 E= 3.5e-006 138 42 -1200 -1200 170 -69 -1200 -1200 193 -1200 -1200 -1200 -1200 -1200 201 -243 -1200 -1200 -1200 192 -1200 18 163 -1200 -1200 208 -1200 -1200 161 -328 -47 -1200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGTGCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 3.5e-006 0.682927 0.317073 0.000000 0.000000 0.853659 0.146341 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.951220 0.048780 0.000000 0.000000 0.000000 1.000000 0.000000 0.268293 0.731707 0.000000 0.000000 1.000000 0.000000 0.000000 0.804878 0.024390 0.170732 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAGTGCA MEME-1 regular expression -------------------------------------------------------------------------------- [AC]AAGT[GC]CA -------------------------------------------------------------------------------- Time 7.47 secs. ******************************************************************************** ******************************************************************************** MOTIF GGKGGGKG MEME-2 width = 8 sites = 27 llr = 242 E-value = 1.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGKGGGKG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::3::: pos.-specific C :::2:::: probability G aa587a4a matrix T ::5:::6: bits 2.1 ** * * 1.9 ** * * 1.7 ** * * 1.5 ** * * * Relative 1.2 ** *** * Entropy 1.0 ******** (13.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGGTG consensus T A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGKG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3675691-3675811 62 1.11e-05 AGCGGGGGGG GGGGGGTG GTATTAGTCA chr2R:7257571-7257691 27 1.11e-05 GCCACCAAAA GGGGGGTG GATGGTCCAC chr3R:9946572-9946692 106 1.11e-05 CACCGAGTGC GGGGGGTG AGGGGAC chr3R:11762640-11762760 5 2.34e-05 GCGG GGTGGGTG AAGGGAAGCG chr2L:18120236-18120356 84 2.34e-05 GGCGAAAGTG GGTGGGTG GAAAGTGGAT chr3L:12411447-12411567 98 2.34e-05 CTTTTTTCCC GGTGGGTG TGACGGGGTG chr2L:8325320-8325440 43 2.34e-05 GGCGAtgggt ggtgggtg gtggtcggtg chrX:2684891-2685011 32 2.34e-05 TGACCAGGTG GGTGGGTG AGTAATGCCG chrX:18369895-18370015 105 2.34e-05 ggtgatgggt ggtgggtg gCGAAGGG chr2L:309938-310058 55 3.34e-05 GGTTCCCACA GGGGGGGG ACCGTTCTCC chr2L:12530649-12530769 7 3.34e-05 AAGCAG GGGGGGGG GTTGGTTAGG chr2L:9780936-9781056 65 3.34e-05 GGAGTCCAGG GGGGGGGG GTCAGAAATG chrX:11821995-11822115 60 4.45e-05 GGTGGCAGTG GGTGGGGG TGCCACTGTC chr2R:24747963-24748083 62 4.45e-05 TCCCCTGCGG GGTGGGGG GTTCGGGGCT chr3R:9951161-9951281 55 4.45e-05 GGTGCCAAGA GGTGGGGG TGTTTGCCGA chr2R:16180071-16180191 104 5.68e-05 CAAACGAAAG GGGGAGTG AGAGGAAGA chr3L:17000458-17000578 84 5.68e-05 CTGAAATAGG GGGGAGTG AAGTGAAGGT chr2L:7967782-7967902 2 5.68e-05 G GGGGAGTG GGGCACAGGC chr3L:11629488-11629608 16 7.05e-05 ATGACGTCAA GGTGAGTG GGTCGCACGG chr3R:4655015-4655135 64 7.05e-05 AAAACCCAAA GGTGAGTG AGTGCAACAG chr3R:19135099-19135219 74 8.16e-05 AGTTTTGTTT GGGCGGTG AGCCGGAAAA chr2R:10278985-10279105 3 8.16e-05 GT GGGCGGTG GGCGGGGCGG chr3R:14070225-14070345 1 1.05e-04 . GGTCGGTG AAATGCGCAT chr3L:17584824-17584944 109 1.05e-04 gaagggggag ggggaggg gcag chr2L:8202717-8202837 25 1.05e-04 TTCCACTTGA GGGGAGGG TGGTCTCCGA chr3L:17956846-17956966 71 1.27e-04 GGAAAAAAAG GGGCGGGG TGTGGGAATT chr3R:9931215-9931335 18 1.38e-04 GCAGGCAGGC GGTCGGGG GCCGGGTGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGKG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3675691-3675811 1.1e-05 61_[+2]_51 chr2R:7257571-7257691 1.1e-05 26_[+2]_86 chr3R:9946572-9946692 1.1e-05 105_[+2]_7 chr3R:11762640-11762760 2.3e-05 4_[+2]_108 chr2L:18120236-18120356 2.3e-05 83_[+2]_29 chr3L:12411447-12411567 2.3e-05 97_[+2]_15 chr2L:8325320-8325440 2.3e-05 42_[+2]_70 chrX:2684891-2685011 2.3e-05 31_[+2]_81 chrX:18369895-18370015 2.3e-05 104_[+2]_8 chr2L:309938-310058 3.3e-05 54_[+2]_58 chr2L:12530649-12530769 3.3e-05 6_[+2]_106 chr2L:9780936-9781056 3.3e-05 64_[+2]_48 chrX:11821995-11822115 4.4e-05 59_[+2]_53 chr2R:24747963-24748083 4.4e-05 61_[+2]_51 chr3R:9951161-9951281 4.4e-05 54_[+2]_58 chr2R:16180071-16180191 5.7e-05 103_[+2]_9 chr3L:17000458-17000578 5.7e-05 83_[+2]_29 chr2L:7967782-7967902 5.7e-05 1_[+2]_111 chr3L:11629488-11629608 7e-05 15_[+2]_97 chr3R:4655015-4655135 7e-05 63_[+2]_49 chr3R:19135099-19135219 8.2e-05 73_[+2]_39 chr2R:10278985-10279105 8.2e-05 2_[+2]_110 chr3R:14070225-14070345 0.0001 [+2]_112 chr3L:17584824-17584944 0.0001 108_[+2]_4 chr2L:8202717-8202837 0.0001 24_[+2]_88 chr3L:17956846-17956966 0.00013 70_[+2]_42 chr3R:9931215-9931335 0.00014 17_[+2]_95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGKG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGKGGGKG width=8 seqs=27 chrX:3675691-3675811 ( 62) GGGGGGTG 1 chr2R:7257571-7257691 ( 27) GGGGGGTG 1 chr3R:9946572-9946692 ( 106) GGGGGGTG 1 chr3R:11762640-11762760 ( 5) GGTGGGTG 1 chr2L:18120236-18120356 ( 84) GGTGGGTG 1 chr3L:12411447-12411567 ( 98) GGTGGGTG 1 chr2L:8325320-8325440 ( 43) GGTGGGTG 1 chrX:2684891-2685011 ( 32) GGTGGGTG 1 chrX:18369895-18370015 ( 105) GGTGGGTG 1 chr2L:309938-310058 ( 55) GGGGGGGG 1 chr2L:12530649-12530769 ( 7) GGGGGGGG 1 chr2L:9780936-9781056 ( 65) GGGGGGGG 1 chrX:11821995-11822115 ( 60) GGTGGGGG 1 chr2R:24747963-24748083 ( 62) GGTGGGGG 1 chr3R:9951161-9951281 ( 55) GGTGGGGG 1 chr2R:16180071-16180191 ( 104) GGGGAGTG 1 chr3L:17000458-17000578 ( 84) GGGGAGTG 1 chr2L:7967782-7967902 ( 2) GGGGAGTG 1 chr3L:11629488-11629608 ( 16) GGTGAGTG 1 chr3R:4655015-4655135 ( 64) GGTGAGTG 1 chr3R:19135099-19135219 ( 74) GGGCGGTG 1 chr2R:10278985-10279105 ( 3) GGGCGGTG 1 chr3R:14070225-14070345 ( 1) GGTCGGTG 1 chr3L:17584824-17584944 ( 109) GGGGAGGG 1 chr2L:8202717-8202837 ( 25) GGGGAGGG 1 chr3L:17956846-17956966 ( 71) GGGCGGGG 1 chr3R:9931215-9931335 ( 18) GGTCGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGKG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9783 E= 1.3e+002 -1140 -1140 208 -1140 -1140 -1140 208 -1140 -1140 -1140 113 87 -1140 -35 178 -1140 -2 -1140 165 -1140 -1140 -1140 208 -1140 -1140 -1140 65 126 -1140 -1140 208 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGKG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.3e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.518519 0.481481 0.000000 0.185185 0.814815 0.000000 0.259259 0.000000 0.740741 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.370370 0.629630 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGKG MEME-2 regular expression -------------------------------------------------------------------------------- GG[GT]G[GA]G[TG]G -------------------------------------------------------------------------------- Time 13.76 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCACCC MEME-3 width = 8 sites = 16 llr = 159 E-value = 1.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCACCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::9::: pos.-specific C a98a:a9a probability G :12:1::: matrix T ::::::1: bits 2.1 * * * * 1.9 * * * * 1.7 ** * * * 1.5 ******** Relative 1.2 ******** Entropy 1.0 ******** (14.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCCACCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCACCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:30308133-30308253 107 1.10e-05 GGCCCACCTC CCCCACCC CCCCAC chrX:13322570-13322690 113 1.10e-05 AATGAGAACG CCCCACCC chr2R:6870371-6870491 14 1.10e-05 ATATGCAGTG CCCCACCC GACACCCATC chr2L:309938-310058 10 1.10e-05 TTGACATAA CCCCACCC CTCGCACCTT chr2L:16317271-16317391 42 1.10e-05 CTCCAATCAC CCCCACCC CGCCTTTCCA chr2R:21084156-21084276 11 1.10e-05 CCCCACTAAA CCCCACCC ATCGCCACAG chr3L:19946988-19947108 95 1.10e-05 tccctccacc ccccaccc caccGCTTTT chr3L:17933171-17933291 95 1.10e-05 ATTGCTCTGC CCCCACCC AGAACCTTTC chr3R:21587594-21587714 99 2.21e-05 GTGCCAAGTG CCGCACCC ACCCCTCACC chr3L:11264157-11264277 12 2.21e-05 CCGATCCCCC CCGCACCC CTTGGGATAT chr3R:13666100-13666220 26 2.21e-05 AGTCCCACTC CCGCACCC GCTCCCGTTC chr2L:1117135-1117255 83 3.20e-05 AGTCGCCATT CCCCGCCC GATAAGATTG chr2L:6514077-6514197 84 3.20e-05 AGCCGCACAG CCCCGCCC ACCCGTGTGC chr3R:26260996-26261116 25 4.43e-05 CGCGTAGCCC CCCCACTC CTTCAACCGC chr3R:24566874-24566994 102 4.43e-05 ATGCAGTTTT CCCCACTC ACCGTCTGTC chr2R:16138968-16139088 87 5.54e-05 CCTTGCAATT CGCCACCC CCCGCACCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCACCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30308133-30308253 1.1e-05 106_[+3]_6 chrX:13322570-13322690 1.1e-05 112_[+3] chr2R:6870371-6870491 1.1e-05 13_[+3]_99 chr2L:309938-310058 1.1e-05 9_[+3]_103 chr2L:16317271-16317391 1.1e-05 41_[+3]_71 chr2R:21084156-21084276 1.1e-05 10_[+3]_102 chr3L:19946988-19947108 1.1e-05 94_[+3]_18 chr3L:17933171-17933291 1.1e-05 94_[+3]_18 chr3R:21587594-21587714 2.2e-05 98_[+3]_14 chr3L:11264157-11264277 2.2e-05 11_[+3]_101 chr3R:13666100-13666220 2.2e-05 25_[+3]_87 chr2L:1117135-1117255 3.2e-05 82_[+3]_30 chr2L:6514077-6514197 3.2e-05 83_[+3]_29 chr3R:26260996-26261116 4.4e-05 24_[+3]_88 chr3R:24566874-24566994 4.4e-05 101_[+3]_11 chr2R:16138968-16139088 5.5e-05 86_[+3]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCACCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCACCC width=8 seqs=16 chr3R:30308133-30308253 ( 107) CCCCACCC 1 chrX:13322570-13322690 ( 113) CCCCACCC 1 chr2R:6870371-6870491 ( 14) CCCCACCC 1 chr2L:309938-310058 ( 10) CCCCACCC 1 chr2L:16317271-16317391 ( 42) CCCCACCC 1 chr2R:21084156-21084276 ( 11) CCCCACCC 1 chr3L:19946988-19947108 ( 95) CCCCACCC 1 chr3L:17933171-17933291 ( 95) CCCCACCC 1 chr3R:21587594-21587714 ( 99) CCGCACCC 1 chr3L:11264157-11264277 ( 12) CCGCACCC 1 chr3R:13666100-13666220 ( 26) CCGCACCC 1 chr2L:1117135-1117255 ( 83) CCCCGCCC 1 chr2L:6514077-6514197 ( 84) CCCCGCCC 1 chr3R:26260996-26261116 ( 25) CCCCACTC 1 chr3R:24566874-24566994 ( 102) CCCCACTC 1 chr2R:16138968-16139088 ( 87) CGCCACCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCACCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 1.5e+002 -1064 208 -1064 -1064 -1064 198 -192 -1064 -1064 178 -34 -1064 -1064 208 -1064 -1064 173 -1064 -92 -1064 -1064 208 -1064 -1064 -1064 189 -1064 -108 -1064 208 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCACCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.5e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.937500 0.062500 0.000000 0.000000 0.812500 0.187500 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.000000 0.125000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.875000 0.000000 0.125000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCACCC MEME-3 regular expression -------------------------------------------------------------------------------- CCCCACCC -------------------------------------------------------------------------------- Time 20.00 secs. ******************************************************************************** ******************************************************************************** MOTIF TGVACTTT MEME-4 width = 8 sites = 33 llr = 291 E-value = 7.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGVACTTT MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::3a:::: pos.-specific C ::4:9::: probability G :a2::::2 matrix T a:1:1aa8 bits 2.1 1.9 ** * ** 1.7 ** **** 1.5 ** **** Relative 1.2 ** ***** Entropy 1.0 ** ***** (12.7 bits) 0.8 ** ***** 0.6 ** ***** 0.4 ** ***** 0.2 ******** 0.0 -------- Multilevel TGCACTTT consensus A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGVACTTT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23384876-23384996 56 1.70e-05 CCGTGCGCCG TGCACTTT GCTCTTGTGC chr2R:24980713-24980833 9 1.70e-05 CTAAACTT TGCACTTT GAGTTCGCTC chr2R:8145491-8145611 6 1.70e-05 TAATA TGCACTTT TTAATGGGTC chr3R:19575855-19575975 24 1.70e-05 ACTGGAACCA TGCACTTT GGGTAATTAG chr3L:20389655-20389775 73 1.70e-05 CATTGACTTT TGCACTTT TCATTTCAAT chr2L:9949315-9949435 93 3.59e-05 TGGCTGGGCA TGAACTTT GGTCTAAGCT chr2R:18515675-18515795 65 3.59e-05 CACAAGGAAT TGAACTTT GTGCCCCGTC chr2R:21618995-21619115 59 3.59e-05 TCTGAAACAC TGAACTTT GTTCGTCGAA chr2L:20674755-20674875 45 3.59e-05 ACGGCAGCGG TGAACTTT GAAGTAAAAA chr3L:4415459-4415579 51 3.59e-05 GAACAAAGCC TGAACTTT CGACTGCTGG chr3L:21502149-21502269 60 3.59e-05 CTCAACGCAC TGAACTTT GGACAACGCT chr3L:17000458-17000578 58 3.59e-05 GTACTAATGC TGAACTTT GAACCCCCCT chr3R:8354077-8354197 44 3.59e-05 GCCCCGGTAA TGAACTTT GTAATGGGTC chr2R:24954706-24954826 113 3.59e-05 CTCGCTATTT TGAACTTT chr2R:18529890-18530010 73 5.29e-05 TTCCACTCTG TGGACTTT GATATGCGGT chr3R:21180656-21180776 48 5.29e-05 tggcactTTT TGGACTTT TGCACACTCG chr2R:22571951-22572071 80 5.29e-05 GACTGAACAT TGGACTTT GATCGTTGGC chr2R:19445678-19445798 59 5.29e-05 CTGTAATCCG TGGACTTT GCTCTACGTA chr2L:8204515-8204635 80 5.29e-05 GCCCTGGACT TGGACTTT GTAACCCAAA chr2L:7028568-7028688 50 5.29e-05 CATTGTGTTT TGGACTTT GGCCGTGCCG chr2L:487881-488001 47 5.29e-05 GTCAGCGCAT TGGACTTT GATCGAATGC chr3L:18044537-18044657 36 6.82e-05 GTTATACGCC TGCACTTG CCAGGCACAC chr3L:9096531-9096651 25 6.82e-05 GACTTCGAGC TGCACTTG GGAAGTACGA chr2L:250336-250456 84 6.82e-05 CATAGAGAAA TGCACTTG GAACTGCGGG chr2R:9835878-9835998 66 6.82e-05 CAAACGAACG TGCACTTG AGCCGGAGTC chr3L:11272427-11272547 81 6.82e-05 TCAGGTGGAG TGCACTTG GCACGTGTTA chr2L:843949-844069 67 8.51e-05 TGTGTGAATG TGAACTTG AAGTTCGTAG chr3R:19853230-19853350 94 1.19e-04 AGCAATGAGT TGTACTTT TTTCCCCTAG chr2R:7533893-7534013 40 1.19e-04 CAATTAGGTC TGTACTTT GACCCCCGGA chr2R:11592981-11593101 52 1.38e-04 CACTGGCTAT TGCATTTT CCGCGATTCA chr3L:17918188-17918308 103 1.38e-04 TTTTGCCCTG TGCATTTT GAGTTATTTG chr2R:13537352-13537472 18 1.78e-04 acaaGTGGAA TGGATTTT GTGGCGCTTT chr3R:27706224-27706344 55 2.14e-04 CGATGGGGAA TTCACTTT TGCCGGAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGVACTTT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23384876-23384996 1.7e-05 55_[+4]_57 chr2R:24980713-24980833 1.7e-05 8_[+4]_104 chr2R:8145491-8145611 1.7e-05 5_[+4]_107 chr3R:19575855-19575975 1.7e-05 23_[+4]_89 chr3L:20389655-20389775 1.7e-05 72_[+4]_40 chr2L:9949315-9949435 3.6e-05 92_[+4]_20 chr2R:18515675-18515795 3.6e-05 64_[+4]_48 chr2R:21618995-21619115 3.6e-05 58_[+4]_54 chr2L:20674755-20674875 3.6e-05 44_[+4]_68 chr3L:4415459-4415579 3.6e-05 50_[+4]_62 chr3L:21502149-21502269 3.6e-05 59_[+4]_53 chr3L:17000458-17000578 3.6e-05 57_[+4]_55 chr3R:8354077-8354197 3.6e-05 43_[+4]_69 chr2R:24954706-24954826 3.6e-05 112_[+4] chr2R:18529890-18530010 5.3e-05 72_[+4]_40 chr3R:21180656-21180776 5.3e-05 47_[+4]_65 chr2R:22571951-22572071 5.3e-05 79_[+4]_33 chr2R:19445678-19445798 5.3e-05 58_[+4]_54 chr2L:8204515-8204635 5.3e-05 79_[+4]_33 chr2L:7028568-7028688 5.3e-05 49_[+4]_63 chr2L:487881-488001 5.3e-05 46_[+4]_66 chr3L:18044537-18044657 6.8e-05 35_[+4]_77 chr3L:9096531-9096651 6.8e-05 24_[+4]_88 chr2L:250336-250456 6.8e-05 83_[+4]_29 chr2R:9835878-9835998 6.8e-05 65_[+4]_47 chr3L:11272427-11272547 6.8e-05 80_[+4]_32 chr2L:843949-844069 8.5e-05 66_[+4]_46 chr3R:19853230-19853350 0.00012 93_[+4]_19 chr2R:7533893-7534013 0.00012 39_[+4]_73 chr2R:11592981-11593101 0.00014 51_[+4]_61 chr3L:17918188-17918308 0.00014 102_[+4]_10 chr2R:13537352-13537472 0.00018 17_[+4]_95 chr3R:27706224-27706344 0.00021 54_[+4]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGVACTTT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGVACTTT width=8 seqs=33 chr3R:23384876-23384996 ( 56) TGCACTTT 1 chr2R:24980713-24980833 ( 9) TGCACTTT 1 chr2R:8145491-8145611 ( 6) TGCACTTT 1 chr3R:19575855-19575975 ( 24) TGCACTTT 1 chr3L:20389655-20389775 ( 73) TGCACTTT 1 chr2L:9949315-9949435 ( 93) TGAACTTT 1 chr2R:18515675-18515795 ( 65) TGAACTTT 1 chr2R:21618995-21619115 ( 59) TGAACTTT 1 chr2L:20674755-20674875 ( 45) TGAACTTT 1 chr3L:4415459-4415579 ( 51) TGAACTTT 1 chr3L:21502149-21502269 ( 60) TGAACTTT 1 chr3L:17000458-17000578 ( 58) TGAACTTT 1 chr3R:8354077-8354197 ( 44) TGAACTTT 1 chr2R:24954706-24954826 ( 113) TGAACTTT 1 chr2R:18529890-18530010 ( 73) TGGACTTT 1 chr3R:21180656-21180776 ( 48) TGGACTTT 1 chr2R:22571951-22572071 ( 80) TGGACTTT 1 chr2R:19445678-19445798 ( 59) TGGACTTT 1 chr2L:8204515-8204635 ( 80) TGGACTTT 1 chr2L:7028568-7028688 ( 50) TGGACTTT 1 chr2L:487881-488001 ( 47) TGGACTTT 1 chr3L:18044537-18044657 ( 36) TGCACTTG 1 chr3L:9096531-9096651 ( 25) TGCACTTG 1 chr2L:250336-250456 ( 84) TGCACTTG 1 chr2R:9835878-9835998 ( 66) TGCACTTG 1 chr3L:11272427-11272547 ( 81) TGCACTTG 1 chr2L:843949-844069 ( 67) TGAACTTG 1 chr3R:19853230-19853350 ( 94) TGTACTTT 1 chr2R:7533893-7534013 ( 40) TGTACTTT 1 chr2R:11592981-11593101 ( 52) TGCATTTT 1 chr3L:17918188-17918308 ( 103) TGCATTTT 1 chr2R:13537352-13537472 ( 18) TGGATTTT 1 chr3R:27706224-27706344 ( 55) TTCACTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGVACTTT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.507 E= 7.0e-002 -1169 -1169 -1169 192 -1169 -1169 203 -312 20 73 3 -212 193 -1169 -1169 -1169 -1169 194 -1169 -153 -1169 -1169 -1169 192 -1169 -1169 -1169 192 -1169 -1169 -38 163 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGVACTTT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 7.0e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.969697 0.030303 0.303030 0.393939 0.242424 0.060606 1.000000 0.000000 0.000000 0.000000 0.000000 0.909091 0.000000 0.090909 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.181818 0.818182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGVACTTT MEME-4 regular expression -------------------------------------------------------------------------------- TG[CAG]ACTTT -------------------------------------------------------------------------------- Time 26.27 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCCGCC MEME-5 width = 8 sites = 18 llr = 169 E-value = 1.9e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::3::1:: pos.-specific C 9a1aa:8a probability G 1:7::82: matrix T :::::2:: bits 2.1 * ** * 1.9 ** ** * 1.7 ** ** * 1.5 ** ** ** Relative 1.2 ** ** ** Entropy 1.0 ** ***** (13.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCGCC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:18044537-18044657 64 9.95e-06 AACACCCTCC CCGCCGCC TAGAAACCCC chr2L:18713832-18713952 2 9.95e-06 T CCGCCGCC CGCCGAGATT chr2R:7472320-7472440 22 9.95e-06 ACAATTCCGT CCGCCGCC GTCTAATTGC chr2L:6514077-6514197 107 9.95e-06 TGTGCCCAAC CCGCCGCC CCCCCT chr2R:9137347-9137467 53 9.95e-06 AGCTTGGCCT CCGCCGCC TCCTCCTCCA chr2R:8671420-8671540 49 9.95e-06 CTTCACTCCG CCGCCGCC TGCCCCGTTT chr3R:23139420-23139540 58 2.10e-05 GGTGGTCATC CCACCGCC ACCCACTCCA chr2L:16317271-16317391 6 2.10e-05 TGGCA CCACCGCC CACTTGATCC chr3R:9420707-9420827 78 2.10e-05 AGCCCCTCGA CCACCGCC CACCCCTTTG chr2R:10278985-10279105 113 4.20e-05 GAGCAGAATG CCGCCGGC chr3R:17615891-17616011 55 4.20e-05 TGGCCTGTGG CCGCCGGC AGACCTTTAG chr3R:15407238-15407358 45 4.20e-05 GCATTTGAAT CCGCCGGC CGGAGCGGGA chrX:4576109-4576229 75 4.20e-05 acctgaccga ccgcctcc caaagacccc chr2R:21084156-21084276 71 5.20e-05 ATCGCCTTGT CCCCCGCC CGAAGATCGC chr2L:2228307-2228427 28 7.53e-05 TCCATCCCTG CCACCTCC TCTCCCTTCG chr3R:8087420-8087540 9 7.53e-05 TCCCCATA CCACCTCC TAGGCAAACC chr2R:22373248-22373368 45 9.63e-05 CAACGCAACA GCGCCGCC GGACAAGAGC chr3R:10086149-10086269 92 9.63e-05 ATTCCCCTAC CCGCCACC ACCTTTTCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18044537-18044657 1e-05 63_[+5]_49 chr2L:18713832-18713952 1e-05 1_[+5]_111 chr2R:7472320-7472440 1e-05 21_[+5]_91 chr2L:6514077-6514197 1e-05 106_[+5]_6 chr2R:9137347-9137467 1e-05 52_[+5]_60 chr2R:8671420-8671540 1e-05 48_[+5]_64 chr3R:23139420-23139540 2.1e-05 57_[+5]_55 chr2L:16317271-16317391 2.1e-05 5_[+5]_107 chr3R:9420707-9420827 2.1e-05 77_[+5]_35 chr2R:10278985-10279105 4.2e-05 112_[+5] chr3R:17615891-17616011 4.2e-05 54_[+5]_58 chr3R:15407238-15407358 4.2e-05 44_[+5]_68 chrX:4576109-4576229 4.2e-05 74_[+5]_38 chr2R:21084156-21084276 5.2e-05 70_[+5]_42 chr2L:2228307-2228427 7.5e-05 27_[+5]_85 chr3R:8087420-8087540 7.5e-05 8_[+5]_104 chr2R:22373248-22373368 9.6e-05 44_[+5]_68 chr3R:10086149-10086269 9.6e-05 91_[+5]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCCGCC width=8 seqs=18 chr3L:18044537-18044657 ( 64) CCGCCGCC 1 chr2L:18713832-18713952 ( 2) CCGCCGCC 1 chr2R:7472320-7472440 ( 22) CCGCCGCC 1 chr2L:6514077-6514197 ( 107) CCGCCGCC 1 chr2R:9137347-9137467 ( 53) CCGCCGCC 1 chr2R:8671420-8671540 ( 49) CCGCCGCC 1 chr3R:23139420-23139540 ( 58) CCACCGCC 1 chr2L:16317271-16317391 ( 6) CCACCGCC 1 chr3R:9420707-9420827 ( 78) CCACCGCC 1 chr2R:10278985-10279105 ( 113) CCGCCGGC 1 chr3R:17615891-17616011 ( 55) CCGCCGGC 1 chr3R:15407238-15407358 ( 45) CCGCCGGC 1 chrX:4576109-4576229 ( 75) CCGCCTCC 1 chr2R:21084156-21084276 ( 71) CCCCCGCC 1 chr2L:2228307-2228427 ( 28) CCACCTCC 1 chr3R:8087420-8087540 ( 9) CCACCTCC 1 chr2R:22373248-22373368 ( 45) GCGCCGCC 1 chr3R:10086149-10086269 ( 92) CCGCCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 1.9e+005 -1081 200 -209 -1081 -1081 208 -1081 -1081 8 -209 149 -1081 -1081 208 -1081 -1081 -1081 208 -1081 -1081 -224 -1081 172 -66 -1081 181 -51 -1081 -1081 208 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.9e+005 0.000000 0.944444 0.055556 0.000000 0.000000 1.000000 0.000000 0.000000 0.277778 0.055556 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.055556 0.000000 0.777778 0.166667 0.000000 0.833333 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-5 regular expression -------------------------------------------------------------------------------- CC[GA]CCGCC -------------------------------------------------------------------------------- Time 32.36 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24954706-24954826 1.98e-01 112_[+4(3.59e-05)] chrX:18369895-18370015 2.29e-02 83_[+2(2.34e-05)]_13_[+2(2.34e-05)]_\ 8 chr2L:1124404-1124524 1.18e-01 66_[+1(6.39e-05)]_46 chr3R:13666100-13666220 6.73e-03 1_[+1(9.42e-05)]_16_[+3(2.21e-05)]_\ 87 chr2L:6341905-6342025 9.46e-02 120 chr3R:8354077-8354197 2.16e-02 43_[+4(3.59e-05)]_69 chr3L:17933171-17933291 5.49e-03 94_[+3(1.10e-05)]_18 chr2L:19900333-19900453 7.66e-01 120 chr3L:7790342-7790462 1.36e-01 5_[+1(1.68e-05)]_107 chr2R:9857685-9857805 1.69e-01 26_[+1(6.39e-05)]_86 chr2R:10773485-10773605 4.17e-01 120 chr2R:21647303-21647423 3.89e-02 63_[+1(9.42e-05)]_49 chr2L:8202717-8202837 8.13e-03 1_[+1(4.88e-05)]_111 chrX:2684891-2685011 2.83e-03 27_[+2(2.34e-05)]_85 chr3L:17584824-17584944 2.08e-02 120 chr3R:4655015-4655135 8.52e-03 17_[+1(1.68e-05)]_38_[+2(7.05e-05)]_\ 16_[+2(7.05e-05)]_25 chr2L:20809363-20809483 7.48e-01 120 chr3L:7826898-7827018 3.39e-01 120 chr2L:10514699-10514819 7.42e-02 120 chr3R:8087420-8087540 2.41e-03 8_[+5(7.53e-05)]_51_[+1(4.88e-05)]_\ 45 chr2L:7967782-7967902 3.75e-04 1_[+2(5.68e-05)]_111 chr3L:11629488-11629608 2.22e-01 15_[+2(7.05e-05)]_97 chr3L:12073993-12074113 9.82e-02 112_[+1(1.68e-05)] chr3R:20570300-20570420 1.48e-02 26_[+1(1.68e-05)]_86 chr3L:18832069-18832189 1.27e-01 120 chr2R:9856711-9856831 7.52e-02 72_[+1(4.88e-05)]_40 chr2R:16819308-16819428 6.14e-01 120 chr2L:487881-488001 2.29e-02 46_[+4(5.29e-05)]_66 chr3L:20389655-20389775 8.57e-02 72_[+4(1.70e-05)]_40 chr3L:17008051-17008171 2.89e-02 55_[+1(4.88e-05)]_57 chr3R:9946572-9946692 3.75e-02 105_[+2(1.11e-05)]_7 chr3L:19946988-19947108 4.23e-03 94_[+3(1.10e-05)]_18 chr2L:7028568-7028688 1.44e-02 49_[+4(5.29e-05)]_63 chrX:4576109-4576229 1.80e-03 34_[+1(4.88e-05)]_32_[+5(4.20e-05)]_\ 38 chr2R:8676645-8676765 2.24e-01 120 chr3L:5643002-5643122 1.50e-01 120 chr2L:3363354-3363474 8.22e-01 120 chr3L:15976922-15977042 3.05e-01 120 chr2R:21084156-21084276 3.50e-03 10_[+3(1.10e-05)]_53_[+3(3.20e-05)]_\ 41 chr3R:9951161-9951281 3.40e-02 54_[+2(4.45e-05)]_58 chr2L:10399749-10399869 1.99e-01 78_[+1(3.20e-05)]_34 chr2R:7533893-7534013 1.26e-01 120 chr3R:9433414-9433534 8.34e-01 120 chr2L:7951964-7952084 1.20e-01 120 chr3R:19575855-19575975 6.13e-02 23_[+4(1.70e-05)]_89 chr3R:6583382-6583502 7.29e-01 120 chr3L:22909404-22909524 2.06e-01 120 chr2L:6475345-6475465 4.92e-01 120 chr2R:17084966-17085086 3.07e-01 120 chr3R:18739622-18739742 2.83e-01 120 chr3R:29756370-29756490 5.10e-01 120 chr3R:13700319-13700439 4.49e-02 120 chr2R:8145491-8145611 3.89e-03 5_[+4(1.70e-05)]_51_[+1(4.88e-05)]_\ 48 chr2R:7257571-7257691 4.50e-03 26_[+2(1.11e-05)]_86 chr3R:26890294-26890414 5.45e-01 120 chr3L:11272427-11272547 4.16e-02 80_[+4(6.82e-05)]_32 chr3L:22948314-22948434 5.51e-01 120 chr2L:7948921-7949041 7.28e-01 120 chr3R:19853230-19853350 1.92e-02 58_[+1(4.88e-05)]_54 chr2L:2861267-2861387 7.00e-02 120 chr3L:17000458-17000578 1.61e-03 57_[+4(3.59e-05)]_18_[+2(5.68e-05)]_\ 29 chr3R:14070225-14070345 1.37e-02 120 chr3L:21502149-21502269 6.81e-02 59_[+4(3.59e-05)]_53 chr3R:26247914-26248034 4.50e-01 120 chr3R:30107884-30108004 5.09e-01 120 chr3R:15407238-15407358 6.32e-03 44_[+5(4.20e-05)]_68 chr2R:23672680-23672800 3.00e-01 120 chr3R:12676465-12676585 9.96e-01 120 chr3R:31672780-31672900 4.22e-01 120 chr2R:24747963-24748083 2.09e-02 61_[+2(4.45e-05)]_51 chr2R:17709180-17709300 2.53e-01 120 chr2R:8671420-8671540 3.68e-02 45_[+5(9.95e-06)]_67 chr3L:20838100-20838220 4.03e-01 120 chrX:3675691-3675811 1.27e-02 61_[+2(1.11e-05)]_51 chr3R:12441334-12441454 3.82e-01 120 chr2R:12186221-12186341 3.55e-01 120 chr3R:10086149-10086269 5.40e-04 63_[+1(3.20e-05)]_20_[+5(9.63e-05)]_\ 21 chr2L:13802227-13802347 1.02e-01 120 chr2R:2567082-2567202 4.17e-01 120 chr3R:20546754-20546874 8.08e-02 120 chr3L:22948703-22948823 3.68e-01 120 chr2L:12528133-12528253 2.94e-02 120 chr3L:17603909-17604029 9.09e-02 120 chr2R:9835878-9835998 2.80e-02 65_[+4(6.82e-05)]_47 chr2L:13803436-13803556 3.02e-01 120 chr3L:12410029-12410149 5.42e-01 120 chr2R:11216434-11216554 9.43e-01 120 chr2R:9137347-9137467 1.38e-02 52_[+5(9.95e-06)]_23_[+5(2.10e-05)]_\ 29 chr2L:8356111-8356231 1.14e-01 120 chr2L:9780936-9781056 1.98e-01 62_[+2(3.34e-05)]_50 chr3R:9420707-9420827 4.01e-03 77_[+5(2.10e-05)]_35 chr2L:19442598-19442718 1.97e-01 42_[+1(3.20e-05)]_70 chr2R:9135122-9135242 5.70e-01 120 chr2L:8204515-8204635 5.58e-03 79_[+4(5.29e-05)]_19_[+3(8.87e-05)]_\ 6 chr3R:11757621-11757741 2.74e-01 120 chr3L:4068553-4068673 7.36e-02 120 chr2R:9190864-9190984 2.64e-02 60_[+1(1.68e-05)]_52 chr2L:12530649-12530769 1.04e-01 5_[+2(3.34e-05)]_107 chr3R:28682203-28682323 2.54e-02 29_[+1(1.68e-05)]_83 chr2L:16317271-16317391 2.86e-03 5_[+5(2.10e-05)]_28_[+3(1.10e-05)]_\ 71 chr2R:13537352-13537472 2.18e-01 120 chr3R:4706208-4706328 6.65e-01 120 chr2R:14242699-14242819 5.80e-02 59_[+1(4.88e-05)]_53 chr2L:11058529-11058649 8.94e-03 71_[+1(1.68e-05)]_41 chr2L:8371659-8371779 7.09e-01 120 chr2R:17469827-17469947 5.42e-02 56_[+1(1.68e-05)]_56 chr3R:15225112-15225232 9.65e-01 120 chr3R:20790548-20790668 7.32e-01 120 chr2R:10040134-10040254 1.45e-01 120 chr2L:8325320-8325440 7.99e-02 42_[+2(2.34e-05)]_70 chr2R:15672555-15672675 1.90e-01 120 chr3R:27706224-27706344 3.48e-01 120 chrX:6357723-6357843 1.54e-01 120 chr2R:10275726-10275846 7.72e-01 120 chr3R:9948690-9948810 9.03e-02 1_[+1(3.20e-05)]_111 chr2R:21604327-21604447 7.02e-01 120 chr2L:20793234-20793354 5.10e-02 120 chr2L:250336-250456 1.45e-01 83_[+4(6.82e-05)]_29 chr2R:24980713-24980833 7.88e-02 8_[+4(1.70e-05)]_104 chr3L:4415459-4415579 4.38e-02 50_[+4(3.59e-05)]_62 chr3L:9096531-9096651 1.53e-01 24_[+4(6.82e-05)]_88 chr2L:12001314-12001434 4.48e-02 37_[+1(6.39e-05)]_75 chr3L:1000750-1000870 7.79e-01 120 chr3R:25308225-25308345 2.63e-01 120 chr3R:27292278-27292398 4.91e-01 120 chr3R:15410917-15411037 6.30e-01 120 chrX:16633660-16633780 1.64e-03 120 chr3L:11264157-11264277 2.26e-02 11_[+3(2.21e-05)]_101 chr2L:20674755-20674875 2.52e-01 44_[+4(3.59e-05)]_68 chr3R:23944106-23944226 7.83e-01 120 chr2R:16131943-16132063 2.51e-01 120 chr3R:7076727-7076847 1.21e-01 120 chr2R:12438862-12438982 5.07e-02 120 chr3R:18246215-18246335 1.26e-01 66_[+1(9.42e-05)]_46 chr3R:20839045-20839165 4.82e-01 120 chr2L:8100163-8100283 2.78e-02 120 chr2R:16138968-16139088 1.08e-02 86_[+3(5.54e-05)]_26 chr2L:16653683-16653803 2.66e-01 120 chr3R:10393228-10393348 3.77e-01 120 chr3R:10080570-10080690 3.56e-01 120 chr2R:19445678-19445798 3.77e-01 58_[+4(5.29e-05)]_54 chr3L:7834007-7834127 1.43e-01 120 chr3L:7829768-7829888 6.01e-01 120 chr3R:14711869-14711989 2.90e-01 120 chr2L:6514077-6514197 7.51e-04 83_[+3(3.20e-05)]_15_[+5(9.95e-06)]_\ 6 chr3R:14059843-14059963 1.89e-02 120 chr2R:9577367-9577487 2.25e-02 120 chr2L:309938-310058 3.85e-04 9_[+3(1.10e-05)]_37_[+2(3.34e-05)]_\ 58 chr3R:18578104-18578224 1.71e-01 120 chr3R:8821751-8821871 1.33e-03 38_[+4(1.70e-05)]_74 chr2L:9703159-9703279 5.62e-01 120 chr2R:22373248-22373368 1.24e-02 44_[+5(9.63e-05)]_68 chr3L:3772381-3772501 8.07e-01 120 chr3R:23139420-23139540 4.75e-04 57_[+5(2.10e-05)]_20_[+3(3.20e-05)]_\ 27 chr2R:16180071-16180191 1.85e-02 40_[+1(3.20e-05)]_55_[+2(5.68e-05)]_\ 9 chr2L:8326527-8326647 6.66e-01 120 chr2R:24131419-24131539 2.17e-01 120 chr2L:2228307-2228427 2.77e-02 27_[+5(7.53e-05)]_85 chr3R:9931215-9931335 1.20e-01 120 chr3L:17956846-17956966 6.11e-02 120 chr3R:8654285-8654405 8.64e-01 120 chr2R:7472320-7472440 1.23e-02 21_[+5(9.95e-06)]_91 chr3L:12411447-12411567 2.43e-01 97_[+2(2.34e-05)]_15 chr3L:11593909-11594029 9.90e-01 120 chr3R:24566874-24566994 4.15e-02 101_[+3(4.43e-05)]_11 chr3R:12688242-12688362 2.94e-02 120 chr2R:21618995-21619115 1.80e-01 58_[+4(3.59e-05)]_54 chr2L:120569-120689 4.78e-01 120 chr3R:24626736-24626856 5.33e-01 120 chr3R:16340747-16340867 1.95e-02 95_[+5(7.53e-05)]_7_[+5(9.63e-05)]_\ 2 chr3R:32050811-32050931 5.84e-01 120 chr3R:23993543-23993663 4.72e-02 120 chr3R:7947503-7947623 9.87e-01 120 chr3R:17615891-17616011 5.66e-02 54_[+5(4.20e-05)]_58 chr2L:18713832-18713952 6.30e-04 1_[+5(9.95e-06)]_111 chr2R:22571951-22572071 9.10e-02 79_[+4(5.29e-05)]_33 chr3R:10380217-10380337 1.85e-01 104_[+1(6.39e-05)]_8 chr3R:17678579-17678699 8.22e-01 120 chrX:1031436-1031556 9.25e-01 120 chr3R:24016429-24016549 1.04e-01 120 chr2L:1117135-1117255 7.83e-03 82_[+3(3.20e-05)]_30 chr3L:7836740-7836860 9.36e-03 120 chr2R:18755010-18755130 2.10e-01 120 chr3R:23384876-23384996 1.09e-01 55_[+4(1.70e-05)]_57 chr2L:6447687-6447807 1.32e-01 120 chr3R:15402770-15402890 2.87e-01 120 chr2L:125476-125596 4.73e-01 120 chr2R:7256415-7256535 3.34e-01 120 chr3R:9931434-9931554 7.35e-01 120 chr2R:10278985-10279105 3.86e-03 2_[+2(8.16e-05)]_102_[+5(4.20e-05)] chr3R:26260996-26261116 3.92e-02 24_[+3(4.43e-05)]_88 chr2R:18515675-18515795 8.55e-02 64_[+4(3.59e-05)]_48 chrX:13814213-13814333 9.07e-01 120 chr3R:25277493-25277613 6.48e-01 120 chr3L:11531414-11531534 5.34e-01 120 chr2L:18983134-18983254 1.06e-01 40_[+1(6.39e-05)]_72 chr3R:9950064-9950184 1.87e-01 120 chr2R:7109374-7109494 4.34e-02 83_[+5(7.53e-05)]_4_[+5(7.53e-05)]_\ 17 chr3R:14366066-14366186 4.89e-01 120 chr3L:12050062-12050182 3.42e-01 120 chr3R:9969447-9969567 5.29e-01 120 chr4:1318937-1319057 8.77e-01 120 chr2R:9554762-9554882 1.44e-01 120 chr2L:18120236-18120356 4.52e-02 83_[+2(2.34e-05)]_29 chr3L:12517688-12517808 6.88e-01 120 chr3L:753995-754115 4.59e-01 120 chr2R:7726558-7726678 6.81e-01 120 chr3R:26987602-26987722 8.78e-01 120 chr2L:843949-844069 1.09e-01 66_[+4(8.51e-05)]_46 chr3L:1336950-1337070 8.53e-01 120 chr2R:6870371-6870491 7.75e-03 13_[+3(1.10e-05)]_99 chr2L:18509299-18509419 1.94e-01 120 chr3L:17918188-17918308 2.55e-02 120 chr3R:19135099-19135219 1.59e-01 73_[+2(8.16e-05)]_39 chrX:13322570-13322690 7.62e-03 112_[+3(1.10e-05)] chrX:2108766-2108886 7.64e-01 120 chr3L:18044537-18044657 6.04e-04 35_[+4(6.82e-05)]_20_[+5(9.95e-06)]_\ 49 chr3R:11762640-11762760 2.56e-04 4_[+2(2.34e-05)]_91_[+3(9.98e-05)]_\ 9 chr3L:16234152-16234272 8.73e-01 120 chr3L:17401030-17401150 2.33e-02 120 chr2L:1086474-1086594 9.59e-01 120 chr2R:25285442-25285562 3.21e-01 120 chrX:11821995-11822115 1.37e-01 59_[+2(4.45e-05)]_53 chr3R:21582838-21582958 5.95e-01 120 chr2L:7726450-7726570 9.98e-01 120 chr3R:21180656-21180776 3.67e-02 47_[+4(5.29e-05)]_65 chr3L:5180312-5180432 2.56e-01 120 chr3R:21587594-21587714 9.97e-03 98_[+3(2.21e-05)]_14 chr3L:16112041-16112161 7.40e-02 120 chr2L:9526632-9526752 2.60e-01 120 chr2R:12590153-12590273 1.01e-01 120 chr3L:12507686-12507806 3.51e-01 120 chr3L:7833300-7833420 4.94e-01 120 chr3L:22887145-22887265 1.53e-02 120 chr2L:9949315-9949435 2.42e-02 92_[+4(3.59e-05)]_20 chr2R:19461562-19461682 4.96e-01 120 chr2R:11592981-11593101 2.49e-01 120 chr2R:10473898-10474018 7.06e-01 120 chr3L:9362014-9362134 6.21e-01 120 chr2L:8033955-8034075 9.97e-01 120 chr2L:20674958-20675078 2.11e-01 120 chr3R:26464538-26464658 5.75e-02 51_[+1(4.88e-05)]_61 chr3L:20317128-20317248 7.02e-01 120 chrX:13840218-13840338 8.51e-01 120 chr2L:18457078-18457198 5.66e-02 68_[+1(1.68e-05)]_44 chr2R:7775067-7775187 3.36e-01 120 chr2R:17584029-17584149 7.43e-01 120 chr3R:26260010-26260130 3.94e-01 120 chr2R:18529890-18530010 1.62e-01 72_[+4(5.29e-05)]_40 chr3R:30308133-30308253 1.26e-04 106_[+3(1.10e-05)]_6 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************