******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12744.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:31086498-31086618 1.0000 120 chr3R:27905863-27905983 1.0000 120 chr3L:14235973-14236093 1.0000 120 chr2R:15781245-15781365 1.0000 120 chrX:10243001-10243121 1.0000 120 chrX:18239428-18239548 1.0000 120 chr3R:16004189-16004309 1.0000 120 chr3R:21263287-21263407 1.0000 120 chrX:5332444-5332564 1.0000 120 chr3R:28345420-28345540 1.0000 120 chr2R:16849530-16849650 1.0000 120 chr2R:9875132-9875252 1.0000 120 chr3L:8741339-8741459 1.0000 120 chr2L:12498682-12498802 1.0000 120 chr2L:8334815-8334935 1.0000 120 chr2R:12587714-12587834 1.0000 120 chr3R:13319962-13320082 1.0000 120 chr3R:16981153-16981273 1.0000 120 chr3R:28327356-28327476 1.0000 120 chrX:10602451-10602571 1.0000 120 chr2L:6795014-6795134 1.0000 120 chr2R:22640139-22640259 1.0000 120 chr3R:16899902-16900022 1.0000 120 chr3R:4281757-4281877 1.0000 120 chrX:13817532-13817652 1.0000 120 chr3L:9838662-9838782 1.0000 120 chr2L:8084979-8085099 1.0000 120 chr2L:1049544-1049664 1.0000 120 chr2R:21078457-21078577 1.0000 120 chr2R:6881102-6881222 1.0000 120 chr3L:5819469-5819589 1.0000 120 chr2L:1362371-1362491 1.0000 120 chr2R:20603266-20603386 1.0000 120 chr3L:1609632-1609752 1.0000 120 chr3R:26535156-26535276 1.0000 120 chrX:15498948-15499068 1.0000 120 chr3L:6217945-6218065 1.0000 120 chr3R:14098663-14098783 1.0000 120 chr3R:13078382-13078502 1.0000 120 chrX:5358825-5358945 1.0000 120 chrX:16073460-16073580 1.0000 120 chr3R:29088186-29088306 1.0000 120 chr3R:12422701-12422821 1.0000 120 chr2L:16049763-16049883 1.0000 120 chr2L:13367524-13367644 1.0000 120 chrX:3394205-3394325 1.0000 120 chr2R:24985933-24986053 1.0000 120 chr3L:15591326-15591446 1.0000 120 chr3R:17809222-17809342 1.0000 120 chr3R:16811878-16811998 1.0000 120 chr2L:14161005-14161125 1.0000 120 chr2L:8709532-8709652 1.0000 120 chrX:5746674-5746794 1.0000 120 chr3R:11777269-11777389 1.0000 120 chr3L:18088193-18088313 1.0000 120 chr3R:10098836-10098956 1.0000 120 chr2L:3748828-3748948 1.0000 120 chr2R:24685058-24685178 1.0000 120 chr2R:23062563-23062683 1.0000 120 chr2R:13968121-13968241 1.0000 120 chr2R:22062398-22062518 1.0000 120 chr3R:32051841-32051961 1.0000 120 chr2R:17586095-17586215 1.0000 120 chrX:11715459-11715579 1.0000 120 chrX:14825968-14826088 1.0000 120 chrX:8805913-8806033 1.0000 120 chr3R:23725968-23726088 1.0000 120 chr3R:4906183-4906303 1.0000 120 chr2R:15675940-15676060 1.0000 120 chr2L:8165994-8166114 1.0000 120 chr3R:9581181-9581301 1.0000 120 chr3R:31772068-31772188 1.0000 120 chr3L:20406384-20406504 1.0000 120 chr3R:31945833-31945953 1.0000 120 chr3L:10818389-10818509 1.0000 120 chr2R:6157341-6157461 1.0000 120 chr2R:20319556-20319676 1.0000 120 chr3L:224206-224326 1.0000 120 chr3L:20389108-20389228 1.0000 120 chrX:19665932-19666052 1.0000 120 chr2R:16610036-16610156 1.0000 120 chr3R:12451486-12451606 1.0000 120 chr3L:8440957-8441077 1.0000 120 chr2R:15818600-15818720 1.0000 120 chr2L:7992065-7992185 1.0000 120 chr3R:19165002-19165122 1.0000 120 chr2L:11445561-11445681 1.0000 120 chr3L:18618223-18618343 1.0000 120 chr2L:8276453-8276573 1.0000 120 chr3R:7821763-7821883 1.0000 120 chr3R:23679950-23680070 1.0000 120 chr3L:6264571-6264691 1.0000 120 chrX:16441317-16441437 1.0000 120 chr2R:13996763-13996883 1.0000 120 chr3L:3518952-3519072 1.0000 120 chr2R:16551978-16552098 1.0000 120 chr3R:26588231-26588351 1.0000 120 chr2R:14332167-14332287 1.0000 120 chrX:19166380-19166500 1.0000 120 chr2R:11630013-11630133 1.0000 120 chr2R:21295597-21295717 1.0000 120 chr3R:11741841-11741961 1.0000 120 chrX:5312165-5312285 1.0000 120 chr3R:24626342-24626462 1.0000 120 chr2R:17792747-17792867 1.0000 120 chr3L:22461169-22461289 1.0000 120 chr3R:29251596-29251716 1.0000 120 chr2L:8350618-8350738 1.0000 120 chr2R:13482320-13482440 1.0000 120 chr3R:10566986-10567106 1.0000 120 chr3R:7092103-7092223 1.0000 120 chr3R:18988061-18988181 1.0000 120 chr3R:17655175-17655295 1.0000 120 chr3R:4951949-4952069 1.0000 120 chr3R:19491126-19491246 1.0000 120 chr2R:21549119-21549239 1.0000 120 chrX:13783743-13783863 1.0000 120 chr3R:28556451-28556571 1.0000 120 chrX:10478710-10478830 1.0000 120 chr3L:12802691-12802811 1.0000 120 chr3L:11414688-11414808 1.0000 120 chr3L:17669345-17669465 1.0000 120 chr3R:26888478-26888598 1.0000 120 chr3R:11735467-11735587 1.0000 120 chr3L:6817081-6817201 1.0000 120 chr2R:21128496-21128616 1.0000 120 chr2L:16816076-16816196 1.0000 120 chr3R:5746720-5746840 1.0000 120 chr3R:10893541-10893661 1.0000 120 chr2L:7602074-7602194 1.0000 120 chr3R:24318454-24318574 1.0000 120 chr3R:10161323-10161443 1.0000 120 chrX:16573808-16573928 1.0000 120 chr3L:11528413-11528533 1.0000 120 chrX:17176707-17176827 1.0000 120 chr3R:23348065-23348185 1.0000 120 chrX:16386098-16386218 1.0000 120 chr3R:15330571-15330691 1.0000 120 chrX:3399389-3399509 1.0000 120 chr3R:30802964-30803084 1.0000 120 chr3L:17791638-17791758 1.0000 120 chrX:13845857-13845977 1.0000 120 chr3L:12803705-12803825 1.0000 120 chr2R:14302747-14302867 1.0000 120 chr2L:7306995-7307115 1.0000 120 chr3L:19040425-19040545 1.0000 120 chr3L:14956403-14956523 1.0000 120 chr3L:3450598-3450718 1.0000 120 chrX:13626014-13626134 1.0000 120 chr3R:23803815-23803935 1.0000 120 chrX:1858989-1859109 1.0000 120 chr3R:16338506-16338626 1.0000 120 chr2R:18811957-18812077 1.0000 120 chr2R:17564808-17564928 1.0000 120 chr3L:11258644-11258764 1.0000 120 chr3R:9220156-9220276 1.0000 120 chr2R:11809503-11809623 1.0000 120 chr3R:23730302-23730422 1.0000 120 chr4:225963-226083 1.0000 120 chrX:13755331-13755451 1.0000 120 chr2R:20552097-20552217 1.0000 120 chr3L:1352269-1352389 1.0000 120 chr2R:17394562-17394682 1.0000 120 chr2L:11199146-11199266 1.0000 120 chr3L:8526305-8526425 1.0000 120 chr3R:30802265-30802385 1.0000 120 chr3R:26566941-26567061 1.0000 120 chr2R:9546521-9546641 1.0000 120 chr3L:1578585-1578705 1.0000 120 chr3R:20948102-20948222 1.0000 120 chrX:13257120-13257240 1.0000 120 chr2L:3778749-3778869 1.0000 120 chr3R:21626647-21626767 1.0000 120 chr2R:13541390-13541510 1.0000 120 chr3L:8405272-8405392 1.0000 120 chrX:14169184-14169304 1.0000 120 chr3L:16571514-16571634 1.0000 120 chr2L:7412310-7412430 1.0000 120 chr2R:13337230-13337350 1.0000 120 chrX:6695022-6695142 1.0000 120 chr4:697652-697772 1.0000 120 chrX:3068416-3068536 1.0000 120 chr2R:21134621-21134741 1.0000 120 chr2R:14077601-14077721 1.0000 120 chr3L:17597029-17597149 1.0000 120 chr3L:7782354-7782474 1.0000 120 chr3R:16655806-16655926 1.0000 120 chr2L:20807734-20807854 1.0000 120 chr2R:20906647-20906767 1.0000 120 chr2R:17161019-17161139 1.0000 120 chrX:4366298-4366418 1.0000 120 chr2R:9881452-9881572 1.0000 120 chr3R:16748684-16748804 1.0000 120 chr3L:15832296-15832416 1.0000 120 chr3L:554713-554833 1.0000 120 chr3R:23028666-23028786 1.0000 120 chr3L:5152466-5152586 1.0000 120 chr2L:18377231-18377351 1.0000 120 chrX:1236693-1236813 1.0000 120 chr2R:16150321-16150441 1.0000 120 chr2L:13219858-13219978 1.0000 120 chr2L:7037934-7038054 1.0000 120 chrX:5084857-5084977 1.0000 120 chr3L:19897259-19897379 1.0000 120 chr3R:10889205-10889325 1.0000 120 chr2R:24265284-24265404 1.0000 120 chrX:9152354-9152474 1.0000 120 chrX:16547522-16547642 1.0000 120 chr2R:11275894-11276014 1.0000 120 chr3R:29039786-29039906 1.0000 120 chr2L:6649129-6649249 1.0000 120 chr2L:8982687-8982807 1.0000 120 chr3L:21821789-21821909 1.0000 120 chr3L:7359938-7360058 1.0000 120 chr2L:8692585-8692705 1.0000 120 chr2L:12369648-12369768 1.0000 120 chr2L:15061547-15061667 1.0000 120 chr2R:21379383-21379503 1.0000 120 chr2R:18528837-18528957 1.0000 120 chr2L:6700816-6700936 1.0000 120 chrX:10582219-10582339 1.0000 120 chr2R:6707766-6707886 1.0000 120 chr3L:12693060-12693180 1.0000 120 chr3R:6373907-6374027 1.0000 120 chr2L:3472384-3472504 1.0000 120 chr3R:10140373-10140493 1.0000 120 chr2L:15248729-15248849 1.0000 120 chrX:6590782-6590902 1.0000 120 chr3R:16431763-16431883 1.0000 120 chrX:9193780-9193900 1.0000 120 chr2R:14411714-14411834 1.0000 120 chr2R:23725928-23726048 1.0000 120 chr3L:5926136-5926256 1.0000 120 chr2L:2176175-2176295 1.0000 120 chr2L:220734-220854 1.0000 120 chr3L:21065396-21065516 1.0000 120 chrX:6375808-6375928 1.0000 120 chr3R:11372693-11372813 1.0000 120 chr3L:18822452-18822572 1.0000 120 chrX:3968824-3968944 1.0000 120 chr3L:11580081-11580201 1.0000 120 chrX:18366128-18366248 1.0000 120 chr2R:17748516-17748636 1.0000 120 chr3L:16165833-16165953 1.0000 120 chr3L:16853698-16853818 1.0000 120 chrX:3357791-3357911 1.0000 120 chrX:5285940-5286060 1.0000 120 chr2L:10767884-10768004 1.0000 120 chr3R:14361761-14361881 1.0000 120 chr2R:18829796-18829916 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG12744/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12744.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.296 C 0.207 G 0.199 T 0.297 Background letter frequencies (from file dataset with add-one prior applied): A 0.296 C 0.207 G 0.199 T 0.297 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGSCAHC MEME-1 width = 8 sites = 42 llr = 364 E-value = 7.0e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGSCAHC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::::a3: pos.-specific C 2a:6a:4a probability G 5:a4::1: matrix T 1:::::2: bits 2.3 ** * 2.1 ** * 1.9 ** ** * 1.6 ** ** * Relative 1.4 ***** * Entropy 1.2 ***** * (12.5 bits) 0.9 ***** * 0.7 ***** * 0.5 ****** * 0.2 ****** * 0.0 -------- Multilevel GCGCCACC consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGSCAHC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:3472384-3472504 84 4.46e-06 TGTGCAGATG GCGCCACC ATGACGCGCG chr3L:17597029-17597149 99 4.46e-06 GCTGTAGATG GCGCCACC ATTTTATGTT chr3R:20948102-20948222 80 4.46e-06 TGCTTATACA GCGCCACC TATGTTTGGA chr3L:1352269-1352389 92 4.46e-06 AGCGACGCTA GCGCCACC TATTTCTGAA chr2L:16816076-16816196 60 4.46e-06 TCAGTCGATT GCGCCACC TTGTGCGCGA chr2R:16551978-16552098 27 4.46e-06 ATACAAAAGA GCGCCACC TAGAAAATAT chr2R:15818600-15818720 94 4.46e-06 CACAAATGCA GCGCCACC TATGCGGGCA chr2R:20603266-20603386 37 4.46e-06 TAGACCAGTG GCGCCACC AAACGACAGT chr2L:14161005-14161125 38 1.51e-05 CACAGAGATG GCGCCAAC ACTTAACTAA chr2R:21549119-21549239 66 1.94e-05 TGCGCATTGT GCGCCAGC AACTGTGCAA chrX:3968824-3968944 28 3.19e-05 TTACGTCGAT GCGGCAAC GCTGAGCCAT chr3R:16431763-16431883 43 3.19e-05 ATTCTCACAG GCGCCATC TTACGTATTT chr3R:23348065-23348185 72 3.19e-05 CAGATTTTTG GCGGCAAC AAGTTATTTA chr3L:6264571-6264691 34 3.19e-05 AGATTTACTG GCGCCATC TAGGGCCTTA chr3R:23679950-23680070 20 3.19e-05 CCCAGCAGTG GCGCCATC TATGACAGCA chr2L:1362371-1362491 61 3.19e-05 ACTTCTGCCA GCGCCATC TGTTGAGCGC chr3R:4281757-4281877 33 3.19e-05 ATGCGGAACA GCGGCAAC GAGCCACGTT chr2R:15781245-15781365 99 3.19e-05 TGAGTGAGTG GCGGCAAC AAGATTGTTA chr2R:18528837-18528957 43 3.65e-05 CCCGTCTCCA CCGCCACC CTCCCACCCA chr3R:11372693-11372813 50 4.07e-05 AATCGCAGTG GCGGCAGC AGTCGCAGTC chr3L:15591326-15591446 34 4.07e-05 CATAATTTGT GCGGCAGC AGAAAAAACA chr2R:24985933-24986053 28 4.07e-05 TATCAGTGCG GCGGCAGC GGCGTCGACC chr2R:6707766-6707886 87 5.79e-05 CGCTAGACAG CCGCCAAC GTCGCCCTCA chrX:16573808-16573928 74 5.79e-05 ATTCGAACCG CCGCCAAC AACAATTGCT chrX:9152354-9152474 101 7.12e-05 AACTGTACCA TCGCCACC TATCCCGCCC chr2R:21295597-21295717 30 7.12e-05 TAGTCTGGTA ACGCCACC AGGGCTGCAG chr2R:11630013-11630133 58 7.12e-05 TCTCCCTCGC TCGCCACC TTATTCACTT chr3R:14098663-14098783 43 7.12e-05 ACTGCAGTCA ACGCCACC TGTTGGCAGC chr3R:16748684-16748804 69 8.86e-05 CAACTCAGTG CCGCCATC TGACGTAAGA chr2R:16150321-16150441 90 1.20e-04 AACGATTAAA ACGCCAAC GAGCCTTTGT chr2L:3748828-3748948 13 1.20e-04 TGCCAGCTTG ACGGCACC GGAAGTCGCT chrX:5746674-5746794 22 1.25e-04 CACAACTACA CCGGCAGC ATCTTCGAGT chr3R:21263287-21263407 73 1.25e-04 TGCCTACTTG CCGGCAGC TCAAATAAAA chrX:10478710-10478830 113 1.44e-04 CTCATCACTG CCGGCATC chr2L:8692585-8692705 90 1.81e-04 CGCCCCACAC TCGCCATC TCTCTCGCCC chr3L:7359938-7360058 80 1.81e-04 CCTAATCTAT TCGCCATC CCTAAGTTGT chr2R:14077601-14077721 52 1.81e-04 AATAACGGCA ACGGCAAC AGCAACTACA chrX:13783743-13783863 94 1.81e-04 CCCGCAAGAA ACGGCAAC AACAATAAGC chr3R:4951949-4952069 25 1.81e-04 CGACGCAATT TCGGCAAC GGCGGAAGAA chr3R:27905863-27905983 33 1.81e-04 GAATGGCACG TCGGCAAC CACTCGTTGA chr3R:7821763-7821883 105 2.18e-04 AAGAGCTTTG GCGCCACA GTACCCAC chr3R:23803815-23803935 20 2.33e-04 AATGAAACCA GCGCCAAA ACAAAACGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGSCAHC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3472384-3472504 4.5e-06 83_[+1]_29 chr3L:17597029-17597149 4.5e-06 98_[+1]_14 chr3R:20948102-20948222 4.5e-06 79_[+1]_33 chr3L:1352269-1352389 4.5e-06 91_[+1]_21 chr2L:16816076-16816196 4.5e-06 59_[+1]_53 chr2R:16551978-16552098 4.5e-06 26_[+1]_86 chr2R:15818600-15818720 4.5e-06 93_[+1]_19 chr2R:20603266-20603386 4.5e-06 36_[+1]_76 chr2L:14161005-14161125 1.5e-05 37_[+1]_75 chr2R:21549119-21549239 1.9e-05 65_[+1]_47 chrX:3968824-3968944 3.2e-05 27_[+1]_85 chr3R:16431763-16431883 3.2e-05 42_[+1]_70 chr3R:23348065-23348185 3.2e-05 71_[+1]_41 chr3L:6264571-6264691 3.2e-05 33_[+1]_79 chr3R:23679950-23680070 3.2e-05 19_[+1]_93 chr2L:1362371-1362491 3.2e-05 60_[+1]_52 chr3R:4281757-4281877 3.2e-05 32_[+1]_80 chr2R:15781245-15781365 3.2e-05 98_[+1]_14 chr2R:18528837-18528957 3.7e-05 42_[+1]_70 chr3R:11372693-11372813 4.1e-05 49_[+1]_63 chr3L:15591326-15591446 4.1e-05 33_[+1]_79 chr2R:24985933-24986053 4.1e-05 27_[+1]_85 chr2R:6707766-6707886 5.8e-05 86_[+1]_26 chrX:16573808-16573928 5.8e-05 73_[+1]_39 chrX:9152354-9152474 7.1e-05 100_[+1]_12 chr2R:21295597-21295717 7.1e-05 29_[+1]_83 chr2R:11630013-11630133 7.1e-05 57_[+1]_55 chr3R:14098663-14098783 7.1e-05 42_[+1]_70 chr3R:16748684-16748804 8.9e-05 68_[+1]_44 chr2R:16150321-16150441 0.00012 89_[+1]_23 chr2L:3748828-3748948 0.00012 12_[+1]_100 chrX:5746674-5746794 0.00012 21_[+1]_91 chr3R:21263287-21263407 0.00012 72_[+1]_40 chrX:10478710-10478830 0.00014 112_[+1] chr2L:8692585-8692705 0.00018 89_[+1]_23 chr3L:7359938-7360058 0.00018 79_[+1]_33 chr2R:14077601-14077721 0.00018 51_[+1]_61 chrX:13783743-13783863 0.00018 93_[+1]_19 chr3R:4951949-4952069 0.00018 24_[+1]_88 chr3R:27905863-27905983 0.00018 32_[+1]_80 chr3R:7821763-7821883 0.00022 104_[+1]_8 chr3R:23803815-23803935 0.00023 19_[+1]_93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGSCAHC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGSCAHC width=8 seqs=42 chr2L:3472384-3472504 ( 84) GCGCCACC 1 chr3L:17597029-17597149 ( 99) GCGCCACC 1 chr3R:20948102-20948222 ( 80) GCGCCACC 1 chr3L:1352269-1352389 ( 92) GCGCCACC 1 chr2L:16816076-16816196 ( 60) GCGCCACC 1 chr2R:16551978-16552098 ( 27) GCGCCACC 1 chr2R:15818600-15818720 ( 94) GCGCCACC 1 chr2R:20603266-20603386 ( 37) GCGCCACC 1 chr2L:14161005-14161125 ( 38) GCGCCAAC 1 chr2R:21549119-21549239 ( 66) GCGCCAGC 1 chrX:3968824-3968944 ( 28) GCGGCAAC 1 chr3R:16431763-16431883 ( 43) GCGCCATC 1 chr3R:23348065-23348185 ( 72) GCGGCAAC 1 chr3L:6264571-6264691 ( 34) GCGCCATC 1 chr3R:23679950-23680070 ( 20) GCGCCATC 1 chr2L:1362371-1362491 ( 61) GCGCCATC 1 chr3R:4281757-4281877 ( 33) GCGGCAAC 1 chr2R:15781245-15781365 ( 99) GCGGCAAC 1 chr2R:18528837-18528957 ( 43) CCGCCACC 1 chr3R:11372693-11372813 ( 50) GCGGCAGC 1 chr3L:15591326-15591446 ( 34) GCGGCAGC 1 chr2R:24985933-24986053 ( 28) GCGGCAGC 1 chr2R:6707766-6707886 ( 87) CCGCCAAC 1 chrX:16573808-16573928 ( 74) CCGCCAAC 1 chrX:9152354-9152474 ( 101) TCGCCACC 1 chr2R:21295597-21295717 ( 30) ACGCCACC 1 chr2R:11630013-11630133 ( 58) TCGCCACC 1 chr3R:14098663-14098783 ( 43) ACGCCACC 1 chr3R:16748684-16748804 ( 69) CCGCCATC 1 chr2R:16150321-16150441 ( 90) ACGCCAAC 1 chr2L:3748828-3748948 ( 13) ACGGCACC 1 chrX:5746674-5746794 ( 22) CCGGCAGC 1 chr3R:21263287-21263407 ( 73) CCGGCAGC 1 chrX:10478710-10478830 ( 113) CCGGCATC 1 chr2L:8692585-8692705 ( 90) TCGCCATC 1 chr3L:7359938-7360058 ( 80) TCGCCATC 1 chr2R:14077601-14077721 ( 52) ACGGCAAC 1 chrX:13783743-13783863 ( 94) ACGGCAAC 1 chr3R:4951949-4952069 ( 25) TCGGCAAC 1 chr3R:27905863-27905983 ( 33) TCGGCAAC 1 chr3R:7821763-7821883 ( 105) GCGCCACA 1 chr3R:23803815-23803935 ( 20) GCGCCAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGSCAHC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8977 E= 7.0e-008 -105 -31 146 -106 -1204 227 -1204 -1204 -1204 -1204 233 -1204 -1204 163 84 -1204 -1204 227 -1204 -1204 175 -1204 -1204 -1204 6 79 -48 -64 -264 220 -1204 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGSCAHC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 7.0e-008 0.142857 0.166667 0.547619 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.642857 0.357143 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.309524 0.357143 0.142857 0.190476 0.047619 0.952381 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGSCAHC MEME-1 regular expression -------------------------------------------------------------------------------- GCG[CG]CA[CA]C -------------------------------------------------------------------------------- Time 7.37 secs. ******************************************************************************** ******************************************************************************** MOTIF BGCWGCSM MEME-2 width = 8 sites = 45 llr = 377 E-value = 4.9e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif BGCWGCSM MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::6:::5 pos.-specific C 3:a::a63 probability G 3a:1a:42 matrix T 4::3:::: bits 2.3 ** ** 2.1 ** ** 1.9 ** ** 1.6 ** ** Relative 1.4 ** *** Entropy 1.2 ** *** (12.1 bits) 0.9 ** *** 0.7 ** *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGCAGCCA consensus G T GC sequence C G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGCWGCSM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3068416-3068536 58 6.12e-06 CAAAGAAAGG GGCAGCCA TGTTAAGCAT chr2R:12587714-12587834 41 6.12e-06 CAACACAAAA GGCAGCCA GCGGAAAATA chr2L:12498682-12498802 58 6.12e-06 TCGCCATATT GGCAGCCA TTTTGTTGGC chr2L:8334815-8334935 38 1.25e-05 AGTCACGTTT CGCAGCCA TCGTGGCGTA chr2R:21128496-21128616 49 4.24e-05 GCCAGCCATT CGCAGCGA ACACTTATCG chr2R:15675940-15676060 20 4.24e-05 AACTGATCGC CGCAGCGA AACGCAGGTA chrX:14825968-14826088 93 4.24e-05 AGCAAAGCGT TGCAGCCA AACTAAAGCG chr3R:12422701-12422821 73 4.24e-05 GATTGCAGCA CGCAGCCC TGGCTTCAAG chr3L:6217945-6218065 83 4.24e-05 CTGATGGCAC CGCAGCGA GAAGTTTTCC chr2R:15781245-15781365 62 4.24e-05 ATGAACACAG CGCAGCCC GAAAGTATGC chrX:3968824-3968944 94 4.65e-05 CCACAGGTCT GGCAGCGC AAAAGCTTGT chr2R:21295597-21295717 74 4.65e-05 TCGGCCCGGT GGCAGCGC TGAAATAACA chr3R:11372693-11372813 70 7.01e-05 TCGCAGTCAT CGCAGCGC CCGCAGTAGT chr3L:12693060-12693180 98 7.01e-05 CGCTCGCACT TGCAGCGA GATTGGTGGC chr2L:7037934-7038054 59 7.01e-05 TAGTTTCGAC TGCAGCCC TGGTTCTTGC chrX:1236693-1236813 50 7.01e-05 CATGTACACC TGCAGCCC TGATTCGTTT chr2R:20906647-20906767 32 7.01e-05 TTGAACACAT TGCAGCGA CATCTATCGT chr3L:8440957-8441077 90 7.01e-05 GTCCGAACGC CGCAGCGC CGTTGCCTTT chr3L:10818389-10818509 44 7.01e-05 ACTTTATCAT TGCAGCGA GGTAACAGCT chr3R:4906183-4906303 23 7.01e-05 ATTTGCAACG TGCAGCCC GTTGCCGTCC chrX:8805913-8806033 100 7.01e-05 CAGAGCGAGA TGCAGCGA ATGTTGAGCT chr2R:24985933-24986053 48 7.01e-05 CGTCGACCTA TGCAGCGA CGGCAACTGC chr3R:31086498-31086618 106 7.01e-05 CCCGAAAGTA TGCAGCGA AATAATT chr2L:8692585-8692705 110 7.44e-05 TCTCGCCCAC CGCAGCCG TTT chr3L:224206-224326 74 7.44e-05 ACGAGTGCGA CGCAGCCG AGAACCCCAA chr3R:10161323-10161443 8 9.06e-05 ATACCAG GGCTGCCA GCTACACAAG chr3R:10566986-10567106 112 9.06e-05 AAATAGATAA GGCAGCGG T chr3R:11777269-11777389 40 1.07e-04 CGTCGCTGCC CGCAGCGG GCGAAAATAA chr2R:17792747-17792867 22 1.17e-04 GCCCTCCCCC GGCTGCCC ACTTTCCACT chr2R:14302747-14302867 62 1.43e-04 GATAGGATAG TGCTGCCA GACATAAAAA chr3R:23679950-23680070 38 1.43e-04 TATGACAGCA TGCTGCCA GACCTTTGAA chr2L:11445561-11445681 15 1.43e-04 ATCGAGTGCT CGCTGCGA ACGTTCAGCA chr2R:17748516-17748636 44 1.47e-04 AACAATAACA GGCTGCGC AAATAGAGCA chr2R:24685058-24685178 12 1.47e-04 ATCCGCCCTG GGCTGCGC GCAAAATTCA chr3R:4951949-4952069 10 1.71e-04 TTAATGTTT TGCTGCGA CGCAATTTCG chr3R:16811878-16811998 64 1.71e-04 AATCCAACAT GGCTGCCG CAGTGTCTGC chr3R:16899902-16900022 41 1.71e-04 CATCCATGAT GGCTGCCG CTGTCTCGCC chr3R:28345420-28345540 45 1.71e-04 AATCTCTTAG TGCTGCCC ATACAAAATG chrX:10602451-10602571 24 1.75e-04 TCTGCCGCTT CGCTGCCG GCTTCTTCGT chr2R:23725928-23726048 71 2.00e-04 TTCGGCGCAC TGCTGCCG TCTCGCTCGC chr3R:19491126-19491246 62 2.00e-04 AAAAGCTGGA TGCTGCCG AACTAATTTT chr3R:26588231-26588351 91 2.00e-04 CAAGTGGTGT GGCGGCCA GTGACCTTGA chr3R:21263287-21263407 32 2.00e-04 CCATTACACG GGCGGCCA TCACCGGAAG chr3R:10140373-10140493 13 2.04e-04 CTCACACAGT CGCGGCCA AGGAGATAAC chr3R:26535156-26535276 104 2.17e-04 TGAATGGAAC GGCGGCGA CAAGCAGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGCWGCSM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3068416-3068536 6.1e-06 57_[+2]_55 chr2R:12587714-12587834 6.1e-06 40_[+2]_72 chr2L:12498682-12498802 6.1e-06 57_[+2]_55 chr2L:8334815-8334935 1.2e-05 37_[+2]_75 chr2R:21128496-21128616 4.2e-05 48_[+2]_64 chr2R:15675940-15676060 4.2e-05 19_[+2]_93 chrX:14825968-14826088 4.2e-05 92_[+2]_20 chr3R:12422701-12422821 4.2e-05 72_[+2]_40 chr3L:6217945-6218065 4.2e-05 82_[+2]_30 chr2R:15781245-15781365 4.2e-05 61_[+2]_51 chrX:3968824-3968944 4.7e-05 93_[+2]_19 chr2R:21295597-21295717 4.7e-05 73_[+2]_39 chr3R:11372693-11372813 7e-05 69_[+2]_43 chr3L:12693060-12693180 7e-05 97_[+2]_15 chr2L:7037934-7038054 7e-05 58_[+2]_54 chrX:1236693-1236813 7e-05 49_[+2]_63 chr2R:20906647-20906767 7e-05 31_[+2]_81 chr3L:8440957-8441077 7e-05 89_[+2]_23 chr3L:10818389-10818509 7e-05 43_[+2]_69 chr3R:4906183-4906303 7e-05 22_[+2]_90 chrX:8805913-8806033 7e-05 99_[+2]_13 chr2R:24985933-24986053 7e-05 47_[+2]_65 chr3R:31086498-31086618 7e-05 105_[+2]_7 chr2L:8692585-8692705 7.4e-05 109_[+2]_3 chr3L:224206-224326 7.4e-05 73_[+2]_39 chr3R:10161323-10161443 9.1e-05 7_[+2]_105 chr3R:10566986-10567106 9.1e-05 111_[+2]_1 chr3R:11777269-11777389 0.00011 39_[+2]_73 chr2R:17792747-17792867 0.00012 21_[+2]_91 chr2R:14302747-14302867 0.00014 61_[+2]_51 chr3R:23679950-23680070 0.00014 37_[+2]_75 chr2L:11445561-11445681 0.00014 14_[+2]_98 chr2R:17748516-17748636 0.00015 43_[+2]_69 chr2R:24685058-24685178 0.00015 11_[+2]_101 chr3R:4951949-4952069 0.00017 9_[+2]_103 chr3R:16811878-16811998 0.00017 63_[+2]_49 chr3R:16899902-16900022 0.00017 40_[+2]_72 chr3R:28345420-28345540 0.00017 44_[+2]_68 chrX:10602451-10602571 0.00018 23_[+2]_89 chr2R:23725928-23726048 0.0002 70_[+2]_42 chr3R:19491126-19491246 0.0002 61_[+2]_51 chr3R:26588231-26588351 0.0002 90_[+2]_22 chr3R:21263287-21263407 0.0002 31_[+2]_81 chr3R:10140373-10140493 0.0002 12_[+2]_100 chr3R:26535156-26535276 0.00022 103_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGCWGCSM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BGCWGCSM width=8 seqs=45 chrX:3068416-3068536 ( 58) GGCAGCCA 1 chr2R:12587714-12587834 ( 41) GGCAGCCA 1 chr2L:12498682-12498802 ( 58) GGCAGCCA 1 chr2L:8334815-8334935 ( 38) CGCAGCCA 1 chr2R:21128496-21128616 ( 49) CGCAGCGA 1 chr2R:15675940-15676060 ( 20) CGCAGCGA 1 chrX:14825968-14826088 ( 93) TGCAGCCA 1 chr3R:12422701-12422821 ( 73) CGCAGCCC 1 chr3L:6217945-6218065 ( 83) CGCAGCGA 1 chr2R:15781245-15781365 ( 62) CGCAGCCC 1 chrX:3968824-3968944 ( 94) GGCAGCGC 1 chr2R:21295597-21295717 ( 74) GGCAGCGC 1 chr3R:11372693-11372813 ( 70) CGCAGCGC 1 chr3L:12693060-12693180 ( 98) TGCAGCGA 1 chr2L:7037934-7038054 ( 59) TGCAGCCC 1 chrX:1236693-1236813 ( 50) TGCAGCCC 1 chr2R:20906647-20906767 ( 32) TGCAGCGA 1 chr3L:8440957-8441077 ( 90) CGCAGCGC 1 chr3L:10818389-10818509 ( 44) TGCAGCGA 1 chr3R:4906183-4906303 ( 23) TGCAGCCC 1 chrX:8805913-8806033 ( 100) TGCAGCGA 1 chr2R:24985933-24986053 ( 48) TGCAGCGA 1 chr3R:31086498-31086618 ( 106) TGCAGCGA 1 chr2L:8692585-8692705 ( 110) CGCAGCCG 1 chr3L:224206-224326 ( 74) CGCAGCCG 1 chr3R:10161323-10161443 ( 8) GGCTGCCA 1 chr3R:10566986-10567106 ( 112) GGCAGCGG 1 chr3R:11777269-11777389 ( 40) CGCAGCGG 1 chr2R:17792747-17792867 ( 22) GGCTGCCC 1 chr2R:14302747-14302867 ( 62) TGCTGCCA 1 chr3R:23679950-23680070 ( 38) TGCTGCCA 1 chr2L:11445561-11445681 ( 15) CGCTGCGA 1 chr2R:17748516-17748636 ( 44) GGCTGCGC 1 chr2R:24685058-24685178 ( 12) GGCTGCGC 1 chr3R:4951949-4952069 ( 10) TGCTGCGA 1 chr3R:16811878-16811998 ( 64) GGCTGCCG 1 chr3R:16899902-16900022 ( 41) GGCTGCCG 1 chr3R:28345420-28345540 ( 45) TGCTGCCC 1 chrX:10602451-10602571 ( 24) CGCTGCCG 1 chr2R:23725928-23726048 ( 71) TGCTGCCG 1 chr3R:19491126-19491246 ( 62) TGCTGCCG 1 chr3R:26588231-26588351 ( 91) GGCGGCCA 1 chr3R:21263287-21263407 ( 32) GGCGGCCA 1 chr3R:10140373-10140493 ( 13) CGCGGCCA 1 chr3R:26535156-26535276 ( 104) GGCGGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGCWGCSM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8403 E= 4.9e-004 -1214 59 74 26 -1214 -1214 233 -1214 -1214 227 -1214 -1214 102 -1214 -116 7 -1214 -1214 233 -1214 -1214 227 -1214 -1214 -1214 142 116 -1214 79 48 1 -1214 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGCWGCSM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 4.9e-004 0.000000 0.311111 0.333333 0.355556 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.000000 0.088889 0.311111 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.555556 0.444444 0.000000 0.511111 0.288889 0.200000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BGCWGCSM MEME-2 regular expression -------------------------------------------------------------------------------- [TGC]GC[AT]GC[CG][ACG] -------------------------------------------------------------------------------- Time 13.59 secs. ******************************************************************************** ******************************************************************************** MOTIF BYGCTSGC MEME-3 width = 8 sites = 30 llr = 266 E-value = 3.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif BYGCTSGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 45:a26:a probability G 3:a:14a: matrix T 35::6::: bits 2.3 ** ** 2.1 ** ** 1.9 ** ** 1.6 ** ** Relative 1.4 ** *** Entropy 1.2 ** *** (12.8 bits) 0.9 *** *** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGCTCGC consensus TT CG sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGCTSGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:21379383-21379503 51 4.47e-06 GAAAACCGCA CCGCTCGC GTGCGCAGCT chrX:14825968-14826088 55 4.47e-06 CTCTTCGGCT CCGCTCGC TTCGGATTTG chr3R:4281757-4281877 15 8.77e-06 GCTTTGTAAG GCGCTCGC ATGCGGAACA chr3R:31086498-31086618 89 8.77e-06 CTGCTTTAAT GCGCTCGC CCGAAAGTAT chr2L:220734-220854 29 1.95e-05 ATTAGTAGAA CCGCTGGC TATGAACATG chrX:10602451-10602571 94 1.95e-05 TGGCGGTGTC CTGCTCGC ACTCGCTCAT chr2R:23725928-23726048 81 2.59e-05 TGCTGCCGTC TCGCTCGC TGGCATTCTA chr3L:12693060-12693180 87 2.59e-05 TTGCTGCGTC TCGCTCGC ACTTGCAGCG chrX:8805913-8806033 33 2.59e-05 AGCAGGCGCA TCGCTCGC ACTCGTGCTA chrX:15498948-15499068 71 2.59e-05 CACTCGTCGA TCGCTCGC TCAGCGGATC chrX:9152354-9152474 113 2.90e-05 GCCACCTATC CCGCCCGC chr3R:26535156-26535276 12 2.90e-05 CTAGAGAAAT CCGCCCGC AATTACACAG chr2L:10767884-10768004 90 3.93e-05 CCGTCTCTAG GTGCTCGC GCTGTCCGCT chr2R:13482320-13482440 42 3.93e-05 TTAGTTCCTC GTGCTCGC ACTTTTGTTG chr3L:9838662-9838782 54 3.93e-05 AATGGGAACA GTGCTCGC CATACCTAGC chr3R:10098836-10098956 2 4.55e-05 A CTGCTGGC TGGCACGCGA chr3R:16811878-16811998 27 4.55e-05 AGCGAGATGG CTGCTGGC TCGCAGGACG chr2R:24985933-24986053 100 4.55e-05 AGCGACTGCT CTGCTGGC ATTGCTCAGT chr3R:21626647-21626767 20 6.38e-05 CAGTCGGCAA TCGCTGGC ACTATATTGT chr2R:9546521-9546641 74 6.38e-05 CGTCCTCTTT TTGCTCGC TCTTTATCAG chr3R:4951949-4952069 98 7.43e-05 TTACCCCGCA CCGCGCGC GAACACACAC chrX:18239428-18239548 53 8.47e-05 AGGGCGGCAA GTGCTGGC TGACAAAAGC chr3R:14361761-14361881 2 1.04e-04 C GTGCCCGC AAGCCAATTG chr2R:17792747-17792867 68 1.04e-04 CTCGGGAGGA GCGCGCGC ATTGGAAAAT chr3R:10889205-10889325 33 1.15e-04 tgttCCGCTT CTGCCGGC TGGCGAATAT chr2L:12498682-12498802 8 1.15e-04 ggattcg ctgccggc gatgttgttg chr2R:17394562-17394682 44 1.30e-04 CAGTTACGAT TTGCCCGC GAAAGCGTTA chrX:19665932-19666052 83 1.62e-04 GTCTGGGCCC TCGCGGGC AGGGGCCGCG chr2L:1362371-1362491 80 1.62e-04 GTTGAGCGCT TTGCCGGC GTTGCTCGAT chr2L:8084979-8085099 7 1.62e-04 CGGCGA TCGCGGGC ACAGTGGGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGCTSGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:21379383-21379503 4.5e-06 50_[+3]_62 chrX:14825968-14826088 4.5e-06 54_[+3]_58 chr3R:4281757-4281877 8.8e-06 14_[+3]_98 chr3R:31086498-31086618 8.8e-06 88_[+3]_24 chr2L:220734-220854 1.9e-05 28_[+3]_84 chrX:10602451-10602571 1.9e-05 93_[+3]_19 chr2R:23725928-23726048 2.6e-05 80_[+3]_32 chr3L:12693060-12693180 2.6e-05 86_[+3]_26 chrX:8805913-8806033 2.6e-05 32_[+3]_80 chrX:15498948-15499068 2.6e-05 70_[+3]_42 chrX:9152354-9152474 2.9e-05 112_[+3] chr3R:26535156-26535276 2.9e-05 11_[+3]_101 chr2L:10767884-10768004 3.9e-05 89_[+3]_23 chr2R:13482320-13482440 3.9e-05 41_[+3]_71 chr3L:9838662-9838782 3.9e-05 53_[+3]_59 chr3R:10098836-10098956 4.5e-05 1_[+3]_111 chr3R:16811878-16811998 4.5e-05 26_[+3]_86 chr2R:24985933-24986053 4.5e-05 99_[+3]_13 chr3R:21626647-21626767 6.4e-05 19_[+3]_93 chr2R:9546521-9546641 6.4e-05 73_[+3]_39 chr3R:4951949-4952069 7.4e-05 97_[+3]_15 chrX:18239428-18239548 8.5e-05 52_[+3]_60 chr3R:14361761-14361881 0.0001 1_[+3]_111 chr2R:17792747-17792867 0.0001 67_[+3]_45 chr3R:10889205-10889325 0.00012 32_[+3]_80 chr2L:12498682-12498802 0.00012 7_[+3]_105 chr2R:17394562-17394682 0.00013 43_[+3]_69 chrX:19665932-19666052 0.00016 82_[+3]_30 chr2L:1362371-1362491 0.00016 79_[+3]_33 chr2L:8084979-8085099 0.00016 6_[+3]_106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGCTSGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BYGCTSGC width=8 seqs=30 chr2R:21379383-21379503 ( 51) CCGCTCGC 1 chrX:14825968-14826088 ( 55) CCGCTCGC 1 chr3R:4281757-4281877 ( 15) GCGCTCGC 1 chr3R:31086498-31086618 ( 89) GCGCTCGC 1 chr2L:220734-220854 ( 29) CCGCTGGC 1 chrX:10602451-10602571 ( 94) CTGCTCGC 1 chr2R:23725928-23726048 ( 81) TCGCTCGC 1 chr3L:12693060-12693180 ( 87) TCGCTCGC 1 chrX:8805913-8806033 ( 33) TCGCTCGC 1 chrX:15498948-15499068 ( 71) TCGCTCGC 1 chrX:9152354-9152474 ( 113) CCGCCCGC 1 chr3R:26535156-26535276 ( 12) CCGCCCGC 1 chr2L:10767884-10768004 ( 90) GTGCTCGC 1 chr2R:13482320-13482440 ( 42) GTGCTCGC 1 chr3L:9838662-9838782 ( 54) GTGCTCGC 1 chr3R:10098836-10098956 ( 2) CTGCTGGC 1 chr3R:16811878-16811998 ( 27) CTGCTGGC 1 chr2R:24985933-24986053 ( 100) CTGCTGGC 1 chr3R:21626647-21626767 ( 20) TCGCTGGC 1 chr2R:9546521-9546641 ( 74) TTGCTCGC 1 chr3R:4951949-4952069 ( 98) CCGCGCGC 1 chrX:18239428-18239548 ( 53) GTGCTGGC 1 chr3R:14361761-14361881 ( 2) GTGCCCGC 1 chr2R:17792747-17792867 ( 68) GCGCGCGC 1 chr3R:10889205-10889325 ( 33) CTGCCGGC 1 chr2L:12498682-12498802 ( 8) CTGCCGGC 1 chr2R:17394562-17394682 ( 44) TTGCCCGC 1 chrX:19665932-19666052 ( 83) TCGCGGGC 1 chr2L:1362371-1362491 ( 80) TTGCCGGC 1 chr2L:8084979-8085099 ( 7) TCGCGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGCTSGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5523 E= 3.6e+001 -1155 95 42 17 -1155 136 -1155 65 -1155 -1155 233 -1155 -1155 227 -1155 -1155 -1155 17 -58 109 -1155 161 88 -1155 -1155 -1155 233 -1155 -1155 227 -1155 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGCTSGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 3.6e+001 0.000000 0.400000 0.266667 0.333333 0.000000 0.533333 0.000000 0.466667 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.233333 0.133333 0.633333 0.000000 0.633333 0.366667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BYGCTSGC MEME-3 regular expression -------------------------------------------------------------------------------- [CTG][CT]GC[TC][CG]GC -------------------------------------------------------------------------------- Time 19.71 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGGTGG MEME-4 width = 8 sites = 2 llr = 25 E-value = 3.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGGTGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::a::::: probability G aa:aa:aa matrix T :::::a:: bits 2.3 ***** ** 2.1 ***** ** 1.9 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCGGTGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGTGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:8350618-8350738 47 3.82e-06 TAAAAAACGA GGCGGTGG CATACTTTTA chr3R:23679950-23680070 85 3.82e-06 ATTTTTCTTT GGCGGTGG TATATTTCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGTGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8350618-8350738 3.8e-06 46_[+4]_66 chr3R:23679950-23680070 3.8e-06 84_[+4]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGTGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGGTGG width=8 seqs=2 chr2L:8350618-8350738 ( 47) GGCGGTGG 1 chr3R:23679950-23680070 ( 85) GGCGGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGTGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 3.4e+004 -765 -765 232 -765 -765 -765 232 -765 -765 227 -765 -765 -765 -765 232 -765 -765 -765 232 -765 -765 -765 -765 175 -765 -765 232 -765 -765 -765 232 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGTGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.4e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGTGG MEME-4 regular expression -------------------------------------------------------------------------------- GGCGGTGG -------------------------------------------------------------------------------- Time 25.76 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCGGCG MEME-5 width = 8 sites = 2 llr = 25 E-value = 4.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCGGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:aa::a: probability G :a::aa:a matrix T :::::::: bits 2.3 ******** 2.1 ******** 1.9 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCCGGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9546521-9546641 35 2.88e-06 TAAAACCAAC CGCCGGCG ACAAGCACAG chr3R:11777269-11777389 24 2.88e-06 GACGCTTTGA CGCCGGCG TCGCTGCCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9546521-9546641 2.9e-06 34_[+5]_78 chr3R:11777269-11777389 2.9e-06 23_[+5]_89 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCGGCG width=8 seqs=2 chr2R:9546521-9546641 ( 35) CGCCGGCG 1 chr3R:11777269-11777389 ( 24) CGCCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 4.3e+004 -765 227 -765 -765 -765 -765 232 -765 -765 227 -765 -765 -765 227 -765 -765 -765 -765 232 -765 -765 -765 232 -765 -765 227 -765 -765 -765 -765 232 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.3e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGGCG MEME-5 regular expression -------------------------------------------------------------------------------- CGCCGGCG -------------------------------------------------------------------------------- Time 31.78 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:31086498-31086618 2.42e-03 88_[+3(8.77e-06)]_9_[+2(7.01e-05)]_\ 7 chr3R:27905863-27905983 1.67e-02 120 chr3L:14235973-14236093 4.40e-01 120 chr2R:15781245-15781365 1.41e-03 61_[+2(4.24e-05)]_29_[+1(3.19e-05)]_\ 14 chrX:10243001-10243121 1.00e+00 120 chrX:18239428-18239548 4.56e-03 52_[+3(8.47e-05)]_60 chr3R:16004189-16004309 9.94e-01 120 chr3R:21263287-21263407 7.60e-04 120 chrX:5332444-5332564 9.72e-01 120 chr3R:28345420-28345540 1.04e-02 120 chr2R:16849530-16849650 9.88e-01 120 chr2R:9875132-9875252 5.95e-02 120 chr3L:8741339-8741459 1.06e-01 120 chr2L:12498682-12498802 4.59e-06 8_[+5(4.69e-05)]_41_[+2(6.12e-06)]_\ 55 chr2L:8334815-8334935 4.83e-02 37_[+2(1.25e-05)]_75 chr2R:12587714-12587834 4.37e-03 40_[+2(6.12e-06)]_72 chr3R:13319962-13320082 2.71e-01 120 chr3R:16981153-16981273 8.12e-01 120 chr3R:28327356-28327476 8.66e-01 120 chrX:10602451-10602571 8.20e-06 79_[+3(3.93e-05)]_6_[+3(1.95e-05)]_\ 19 chr2L:6795014-6795134 3.09e-01 120 chr2R:22640139-22640259 9.69e-01 120 chr3R:16899902-16900022 4.13e-02 120 chr3R:4281757-4281877 6.17e-06 14_[+3(8.77e-06)]_10_[+1(3.19e-05)]_\ 80 chrX:13817532-13817652 1.21e-01 120 chr3L:9838662-9838782 3.76e-02 53_[+3(3.93e-05)]_59 chr2L:8084979-8085099 3.58e-02 120 chr2L:1049544-1049664 2.37e-01 120 chr2R:21078457-21078577 9.91e-01 120 chr2R:6881102-6881222 8.15e-01 120 chr3L:5819469-5819589 8.79e-01 120 chr2L:1362371-1362491 5.58e-05 35_[+1(3.19e-05)]_17_[+1(3.19e-05)]_\ 12_[+5(4.69e-05)]_32 chr2R:20603266-20603386 1.70e-02 36_[+1(4.46e-06)]_76 chr3L:1609632-1609752 9.90e-01 120 chr3R:26535156-26535276 1.38e-05 11_[+3(2.90e-05)]_83_[+5(4.69e-05)]_\ 10 chrX:15498948-15499068 1.91e-04 17_[+5(9.32e-05)]_11_[+5(9.32e-05)]_\ 26_[+3(2.59e-05)]_42 chr3L:6217945-6218065 2.27e-02 82_[+2(4.24e-05)]_30 chr3R:14098663-14098783 1.98e-02 42_[+1(7.12e-05)]_70 chr3R:13078382-13078502 4.70e-01 120 chrX:5358825-5358945 8.67e-01 120 chrX:16073460-16073580 9.28e-01 120 chr3R:29088186-29088306 1.81e-01 120 chr3R:12422701-12422821 6.96e-02 72_[+2(4.24e-05)]_40 chr2L:16049763-16049883 2.57e-01 120 chr2L:13367524-13367644 6.14e-02 120 chrX:3394205-3394325 9.91e-01 120 chr2R:24985933-24986053 8.29e-06 27_[+1(4.07e-05)]_12_[+2(7.01e-05)]_\ 44_[+3(4.55e-05)]_13 chr3L:15591326-15591446 2.03e-02 33_[+1(4.07e-05)]_79 chr3R:17809222-17809342 7.48e-01 120 chr3R:16811878-16811998 2.38e-03 26_[+3(4.55e-05)]_86 chr2L:14161005-14161125 1.72e-02 37_[+1(1.51e-05)]_75 chr2L:8709532-8709652 4.04e-02 120 chrX:5746674-5746794 7.88e-02 120 chr3R:11777269-11777389 2.73e-05 23_[+5(2.88e-06)]_3_[+3(7.43e-05)]_\ 78 chr3L:18088193-18088313 9.74e-01 120 chr3R:10098836-10098956 8.71e-02 1_[+3(4.55e-05)]_111 chr2L:3748828-3748948 7.17e-02 120 chr2R:24685058-24685178 3.03e-03 120 chr2R:23062563-23062683 3.68e-01 120 chr2R:13968121-13968241 1.43e-01 120 chr2R:22062398-22062518 9.98e-01 120 chr3R:32051841-32051961 4.07e-01 120 chr2R:17586095-17586215 5.86e-01 120 chrX:11715459-11715579 1.36e-02 120 chrX:14825968-14826088 1.37e-05 54_[+3(4.47e-06)]_30_[+2(4.24e-05)]_\ 12_[+5(4.69e-05)] chrX:8805913-8806033 2.84e-05 32_[+3(2.59e-05)]_26_[+3(3.93e-05)]_\ 6_[+5(9.32e-05)]_11_[+2(7.01e-05)]_13 chr3R:23725968-23726088 5.62e-01 120 chr3R:4906183-4906303 1.72e-01 22_[+2(7.01e-05)]_90 chr2R:15675940-15676060 2.26e-03 19_[+2(4.24e-05)]_93 chr2L:8165994-8166114 1.61e-02 120 chr3R:9581181-9581301 1.21e-01 120 chr3R:31772068-31772188 8.84e-01 120 chr3L:20406384-20406504 9.95e-01 120 chr3R:31945833-31945953 2.80e-01 120 chr3L:10818389-10818509 4.06e-01 43_[+2(7.01e-05)]_69 chr2R:6157341-6157461 9.64e-01 120 chr2R:20319556-20319676 8.65e-01 120 chr3L:224206-224326 2.47e-02 73_[+2(7.44e-05)]_39 chr3L:20389108-20389228 8.29e-01 120 chrX:19665932-19666052 1.86e-03 120 chr2R:16610036-16610156 3.75e-01 120 chr3R:12451486-12451606 1.00e+00 120 chr3L:8440957-8441077 2.50e-02 89_[+2(7.01e-05)]_23 chr2R:15818600-15818720 9.85e-04 93_[+1(4.46e-06)]_19 chr2L:7992065-7992185 9.99e-01 120 chr3R:19165002-19165122 5.62e-01 120 chr2L:11445561-11445681 6.52e-04 9_[+3(3.93e-05)]_103 chr3L:18618223-18618343 2.13e-01 120 chr2L:8276453-8276573 9.70e-01 120 chr3R:7821763-7821883 2.37e-01 120 chr3R:23679950-23680070 1.20e-05 19_[+1(3.19e-05)]_57_[+4(3.82e-06)]_\ 28 chr3L:6264571-6264691 6.17e-02 33_[+1(3.19e-05)]_79 chrX:16441317-16441437 8.82e-01 120 chr2R:13996763-13996883 1.00e+00 120 chr3L:3518952-3519072 4.15e-01 120 chr2R:16551978-16552098 6.92e-03 26_[+1(4.46e-06)]_86 chr3R:26588231-26588351 6.34e-02 120 chr2R:14332167-14332287 2.97e-01 120 chrX:19166380-19166500 2.36e-01 120 chr2R:11630013-11630133 1.16e-02 53_[+3(2.59e-05)]_59 chr2R:21295597-21295717 8.42e-04 29_[+1(7.12e-05)]_36_[+2(4.65e-05)]_\ 39 chr3R:11741841-11741961 9.44e-01 120 chrX:5312165-5312285 1.08e-02 120 chr3R:24626342-24626462 9.99e-01 120 chr2R:17792747-17792867 9.30e-04 120 chr3L:22461169-22461289 3.99e-01 120 chr3R:29251596-29251716 2.13e-02 120 chr2L:8350618-8350738 3.70e-03 46_[+4(3.82e-06)]_66 chr2R:13482320-13482440 2.79e-01 41_[+3(3.93e-05)]_71 chr3R:10566986-10567106 3.18e-02 111_[+2(9.06e-05)]_1 chr3R:7092103-7092223 8.54e-01 120 chr3R:18988061-18988181 2.42e-01 120 chr3R:17655175-17655295 1.08e-02 13_[+5(4.69e-05)]_99 chr3R:4951949-4952069 8.31e-05 97_[+3(7.43e-05)]_15 chr3R:19491126-19491246 2.57e-01 120 chr2R:21549119-21549239 2.46e-03 65_[+1(1.94e-05)]_47 chrX:13783743-13783863 5.50e-03 120 chr3R:28556451-28556571 4.84e-01 120 chrX:10478710-10478830 4.78e-04 120 chr3L:12802691-12802811 9.83e-01 120 chr3L:11414688-11414808 6.35e-01 120 chr3L:17669345-17669465 7.02e-01 120 chr3R:26888478-26888598 8.32e-01 120 chr3R:11735467-11735587 2.42e-03 120 chr3L:6817081-6817201 9.98e-01 120 chr2R:21128496-21128616 1.02e-02 48_[+2(4.24e-05)]_64 chr2L:16816076-16816196 2.98e-02 59_[+1(4.46e-06)]_53 chr3R:5746720-5746840 9.99e-01 120 chr3R:10893541-10893661 4.59e-02 120 chr2L:7602074-7602194 9.61e-01 120 chr3R:24318454-24318574 1.00e+00 120 chr3R:10161323-10161443 3.75e-02 7_[+2(9.06e-05)]_105 chrX:16573808-16573928 2.19e-03 73_[+1(5.79e-05)]_39 chr3L:11528413-11528533 8.92e-01 120 chrX:17176707-17176827 1.00e+00 120 chr3R:23348065-23348185 3.15e-02 71_[+1(3.19e-05)]_41 chrX:16386098-16386218 9.97e-01 120 chr3R:15330571-15330691 1.00e+00 120 chrX:3399389-3399509 9.79e-01 120 chr3R:30802964-30803084 1.00e+00 120 chr3L:17791638-17791758 1.00e+00 120 chrX:13845857-13845977 1.18e-01 120 chr3L:12803705-12803825 9.83e-01 120 chr2R:14302747-14302867 1.94e-01 120 chr2L:7306995-7307115 3.97e-03 120 chr3L:19040425-19040545 1.57e-02 120 chr3L:14956403-14956523 6.77e-02 120 chr3L:3450598-3450718 9.92e-01 120 chrX:13626014-13626134 2.22e-01 42_[+4(2.75e-05)]_70 chr3R:23803815-23803935 4.03e-01 120 chrX:1858989-1859109 9.21e-01 120 chr3R:16338506-16338626 1.87e-01 120 chr2R:18811957-18812077 3.79e-01 120 chr2R:17564808-17564928 7.36e-01 120 chr3L:11258644-11258764 3.03e-01 120 chr3R:9220156-9220276 8.18e-01 120 chr2R:11809503-11809623 9.60e-01 120 chr3R:23730302-23730422 8.27e-01 120 chr4:225963-226083 2.24e-01 120 chrX:13755331-13755451 7.22e-01 120 chr2R:20552097-20552217 2.88e-01 120 chr3L:1352269-1352389 9.05e-03 91_[+1(4.46e-06)]_21 chr2R:17394562-17394682 1.80e-02 120 chr2L:11199146-11199266 9.79e-01 120 chr3L:8526305-8526425 5.22e-01 120 chr3R:30802265-30802385 4.96e-03 68_[+5(4.69e-05)]_44 chr3R:26566941-26567061 3.18e-02 120 chr2R:9546521-9546641 2.45e-04 34_[+5(2.88e-06)]_31_[+3(6.38e-05)]_\ 39 chr3L:1578585-1578705 4.48e-01 120 chr3R:20948102-20948222 3.03e-02 79_[+1(4.46e-06)]_33 chrX:13257120-13257240 1.87e-01 120 chr2L:3778749-3778869 6.18e-01 120 chr3R:21626647-21626767 2.26e-02 19_[+3(6.38e-05)]_93 chr2R:13541390-13541510 4.14e-01 120 chr3L:8405272-8405392 1.00e+00 120 chrX:14169184-14169304 7.18e-01 120 chr3L:16571514-16571634 9.88e-01 120 chr2L:7412310-7412430 8.87e-02 120 chr2R:13337230-13337350 1.29e-03 7_[+4(2.75e-05)]_105 chrX:6695022-6695142 6.69e-02 120 chr4:697652-697772 9.37e-01 120 chrX:3068416-3068536 2.05e-02 57_[+2(6.12e-06)]_55 chr2R:21134621-21134741 9.41e-01 120 chr2R:14077601-14077721 1.98e-01 120 chr3L:17597029-17597149 1.76e-02 98_[+1(4.46e-06)]_14 chr3L:7782354-7782474 9.99e-01 120 chr3R:16655806-16655926 4.21e-01 120 chr2L:20807734-20807854 7.13e-01 120 chr2R:20906647-20906767 1.78e-02 31_[+2(7.01e-05)]_81 chr2R:17161019-17161139 9.49e-01 120 chrX:4366298-4366418 7.66e-01 120 chr2R:9881452-9881572 4.18e-01 120 chr3R:16748684-16748804 1.08e-02 68_[+1(8.86e-05)]_44 chr3L:15832296-15832416 5.77e-01 120 chr3L:554713-554833 1.00e+00 120 chr3R:23028666-23028786 8.95e-01 120 chr3L:5152466-5152586 9.99e-01 120 chr2L:18377231-18377351 9.14e-01 120 chrX:1236693-1236813 2.57e-03 49_[+2(7.01e-05)]_63 chr2R:16150321-16150441 4.66e-02 120 chr2L:13219858-13219978 9.83e-01 120 chr2L:7037934-7038054 1.30e-02 58_[+2(7.01e-05)]_54 chrX:5084857-5084977 3.16e-01 120 chr3L:19897259-19897379 9.24e-01 120 chr3R:10889205-10889325 3.52e-02 120 chr2R:24265284-24265404 5.38e-01 120 chrX:9152354-9152474 3.44e-03 100_[+1(7.12e-05)]_4_[+3(2.90e-05)] chrX:16547522-16547642 3.85e-01 120 chr2R:11275894-11276014 9.69e-01 120 chr3R:29039786-29039906 9.63e-01 120 chr2L:6649129-6649249 5.97e-01 120 chr2L:8982687-8982807 1.00e+00 120 chr3L:21821789-21821909 1.00e+00 120 chr3L:7359938-7360058 5.05e-02 120 chr2L:8692585-8692705 3.24e-03 109_[+2(7.44e-05)]_3 chr2L:12369648-12369768 6.79e-01 120 chr2L:15061547-15061667 9.78e-01 120 chr2R:21379383-21379503 1.52e-03 50_[+3(4.47e-06)]_62 chr2R:18528837-18528957 1.15e-02 42_[+1(3.65e-05)]_70 chr2L:6700816-6700936 1.55e-01 120 chrX:10582219-10582339 1.98e-01 120 chr2R:6707766-6707886 2.05e-02 86_[+1(5.79e-05)]_26 chr3L:12693060-12693180 3.20e-05 86_[+3(2.59e-05)]_3_[+2(7.01e-05)]_\ 15 chr3R:6373907-6374027 9.38e-01 120 chr2L:3472384-3472504 1.18e-03 83_[+1(4.46e-06)]_29 chr3R:10140373-10140493 1.65e-01 120 chr2L:15248729-15248849 9.79e-01 120 chrX:6590782-6590902 1.51e-01 120 chr3R:16431763-16431883 4.79e-03 42_[+1(3.19e-05)]_70 chrX:9193780-9193900 8.44e-01 120 chr2R:14411714-14411834 5.27e-01 120 chr2R:23725928-23726048 4.45e-03 80_[+3(2.59e-05)]_32 chr3L:5926136-5926256 8.88e-01 120 chr2L:2176175-2176295 4.85e-01 120 chr2L:220734-220854 2.14e-05 28_[+3(1.95e-05)]_24_[+4(1.28e-05)]_\ 52 chr3L:21065396-21065516 9.83e-01 120 chrX:6375808-6375928 9.14e-01 120 chr3R:11372693-11372813 8.72e-07 13_[+5(4.69e-05)]_1_[+5(4.69e-05)]_\ 19_[+1(4.07e-05)]_16_[+3(6.38e-05)]_39 chr3L:18822452-18822572 1.00e+00 120 chrX:3968824-3968944 1.91e-03 27_[+1(3.19e-05)]_58_[+2(4.65e-05)]_\ 19 chr3L:11580081-11580201 9.95e-01 120 chrX:18366128-18366248 5.34e-02 120 chr2R:17748516-17748636 4.14e-02 120 chr3L:16165833-16165953 1.00e+00 120 chr3L:16853698-16853818 5.74e-01 120 chrX:3357791-3357911 3.41e-01 120 chrX:5285940-5286060 9.14e-01 120 chr2L:10767884-10768004 2.74e-02 89_[+3(3.93e-05)]_23 chr3R:14361761-14361881 2.65e-02 120 chr2R:18829796-18829916 1.00e+00 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c17n10.farnam.hpc.yale.internal ********************************************************************************