******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12659.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:13813718-13813838 1.0000 120 chrX:8591890-8592010 1.0000 120 chr2R:11452512-11452632 1.0000 120 chr4:787461-787581 1.0000 120 chr3L:12734725-12734845 1.0000 120 chr2R:20618445-20618565 1.0000 120 chrX:8588773-8588893 1.0000 120 chr2R:9291663-9291783 1.0000 120 chr3R:9006304-9006424 1.0000 120 chr2R:8131323-8131443 1.0000 120 chr2R:19456022-19456142 1.0000 120 chr2L:19526558-19526678 1.0000 120 chr2R:1264304-1264424 1.0000 120 chr3R:30039641-30039761 1.0000 120 chr2R:17412645-17412765 1.0000 120 chrX:17627792-17627912 1.0000 120 chr3L:13502614-13502734 1.0000 120 chr3L:8449866-8449986 1.0000 120 chr2R:19437252-19437372 1.0000 120 chrX:635772-635892 1.0000 120 chr2L:12546641-12546761 1.0000 120 chr2R:21168665-21168785 1.0000 120 chrX:2633886-2634006 1.0000 120 chr3R:13011335-13011455 1.0000 120 chrX:16005704-16005824 1.0000 120 chr3R:4811900-4812020 1.0000 120 chr2R:22608259-22608379 1.0000 120 chr3R:9725553-9725673 1.0000 120 chr2R:7407808-7407928 1.0000 120 chr3R:13660312-13660432 1.0000 120 chr3R:18226066-18226186 1.0000 120 chr4:132090-132210 1.0000 120 chr2R:16221713-16221833 1.0000 120 chr4:313743-313863 1.0000 120 chr3R:23820476-23820596 1.0000 120 chr3R:18199687-18199807 1.0000 120 chr2R:24535398-24535518 1.0000 120 chr2R:18180120-18180240 1.0000 120 chr3R:11235112-11235232 1.0000 120 chr2R:23862575-23862695 1.0000 120 chr3L:7339440-7339560 1.0000 120 chr2L:10970288-10970408 1.0000 120 chr3L:21539804-21539924 1.0000 120 chrX:15887307-15887427 1.0000 120 chr2R:5363103-5363223 1.0000 120 chr3R:7080349-7080469 1.0000 120 chr2L:19542319-19542439 1.0000 120 chr2R:7955903-7956023 1.0000 120 chr3L:199254-199374 1.0000 120 chr2R:23865343-23865463 1.0000 120 chr3R:7186921-7187041 1.0000 120 chr3R:11679669-11679789 1.0000 120 chrX:11816498-11816618 1.0000 120 chr2R:16850332-16850452 1.0000 120 chr3R:22462071-22462191 1.0000 120 chr2L:13829746-13829866 1.0000 120 chr3R:17687037-17687157 1.0000 120 chrX:14234187-14234307 1.0000 120 chr2R:18167166-18167286 1.0000 120 chr2R:15322288-15322408 1.0000 120 chr3L:19598784-19598904 1.0000 120 chr2L:11130626-11130746 1.0000 120 chr2R:5250941-5251061 1.0000 120 chr3R:12691530-12691650 1.0000 120 chr3L:6173935-6174055 1.0000 120 chr3L:16602911-16603031 1.0000 120 chr2L:6723098-6723218 1.0000 120 chr3R:29748862-29748982 1.0000 120 chr3R:5393851-5393971 1.0000 120 chrX:14832490-14832610 1.0000 120 chr3L:3818651-3818771 1.0000 120 chr2R:24033934-24034054 1.0000 120 chr2R:9891760-9891880 1.0000 120 chr3L:14559836-14559956 1.0000 120 chr2R:5753347-5753467 1.0000 120 chr2L:10277462-10277582 1.0000 120 chr3R:24650031-24650151 1.0000 120 chr3L:9968373-9968493 1.0000 120 chr2R:20996157-20996277 1.0000 120 chr2R:17683468-17683588 1.0000 120 chr3L:18901558-18901678 1.0000 120 chr2L:21221238-21221358 1.0000 120 chr2L:2236855-2236975 1.0000 120 chr3R:8340980-8341100 1.0000 120 chr3L:20186458-20186578 1.0000 120 chrX:6291224-6291344 1.0000 120 chr3L:3219023-3219143 1.0000 120 chr3R:12431182-12431302 1.0000 120 chr3R:24320439-24320559 1.0000 120 chr3L:9134479-9134599 1.0000 120 chr3L:9137187-9137307 1.0000 120 chr3L:9864315-9864435 1.0000 120 chr2L:10362839-10362959 1.0000 120 chr4:443763-443883 1.0000 120 chr2R:10813343-10813463 1.0000 120 chrX:1026601-1026721 1.0000 120 chrX:16096646-16096766 1.0000 120 chr2L:8308298-8308418 1.0000 120 chrX:12028992-12029112 1.0000 120 chr3R:11628519-11628639 1.0000 120 chr3R:16050741-16050861 1.0000 120 chr3L:15144224-15144344 1.0000 120 chrX:9156534-9156654 1.0000 120 chrX:11611802-11611922 1.0000 120 chr3L:7936105-7936225 1.0000 120 chr2L:6914077-6914197 1.0000 120 chr2R:12200809-12200929 1.0000 120 chr3R:8716158-8716278 1.0000 120 chr2L:452992-453112 1.0000 120 chr2R:5981894-5982014 1.0000 120 chr2L:10298478-10298598 1.0000 120 chr3L:16853664-16853784 1.0000 120 chrX:13287926-13288046 1.0000 120 chr3R:24031891-24032011 1.0000 120 chr3R:12425887-12426007 1.0000 120 chr3R:15804140-15804260 1.0000 120 chr3L:15524083-15524203 1.0000 120 chr2L:20066284-20066404 1.0000 120 chr3R:31771926-31772046 1.0000 120 chr3R:9637570-9637690 1.0000 120 chr2L:8943226-8943346 1.0000 120 chr2L:18951776-18951896 1.0000 120 chrX:19480114-19480234 1.0000 120 chr2L:203648-203768 1.0000 120 chr2R:25253229-25253349 1.0000 120 chr3L:8544885-8545005 1.0000 120 chr2R:20587379-20587499 1.0000 120 chr2R:22924839-22924959 1.0000 120 chr3L:12850007-12850127 1.0000 120 chr2R:17592770-17592890 1.0000 120 chr2R:21160517-21160637 1.0000 120 chr2L:21262905-21263025 1.0000 120 chr4:205829-205949 1.0000 120 chr2R:13553983-13554103 1.0000 120 chr2R:12519070-12519190 1.0000 120 chr2R:21168864-21168984 1.0000 120 chr3R:4397909-4398029 1.0000 120 chr2R:12037214-12037334 1.0000 120 chr2R:13968160-13968280 1.0000 120 chrX:13744657-13744777 1.0000 120 chr3R:12697757-12697877 1.0000 120 chr2R:12344747-12344867 1.0000 120 chr2R:22641320-22641440 1.0000 120 chr3L:1302822-1302942 1.0000 120 chr2L:21344267-21344387 1.0000 120 chr2R:16271927-16272047 1.0000 120 chr2L:11809311-11809431 1.0000 120 chr2L:19791938-19792058 1.0000 120 chr3R:6646822-6646942 1.0000 120 chr2L:10250581-10250701 1.0000 120 chr3L:21175653-21175773 1.0000 120 chr2L:10226795-10226915 1.0000 120 chrX:8075424-8075544 1.0000 120 chr3R:14659405-14659525 1.0000 120 chr2L:6852162-6852282 1.0000 120 chr2L:21142245-21142365 1.0000 120 chr2L:10366603-10366723 1.0000 120 chr2L:10842455-10842575 1.0000 120 chr2L:10247010-10247130 1.0000 120 chr2R:22640187-22640307 1.0000 120 chrX:11493112-11493232 1.0000 120 chr3L:13044437-13044557 1.0000 120 chr2R:24881554-24881674 1.0000 120 chr3R:11244151-11244271 1.0000 120 chr3L:19586150-19586270 1.0000 120 chr2R:12437069-12437189 1.0000 120 chr2L:3144788-3144908 1.0000 120 chr3L:19910194-19910314 1.0000 120 chr3L:8405222-8405342 1.0000 120 chr3L:20520944-20521064 1.0000 120 chr2R:15934692-15934812 1.0000 120 chr3L:3303785-3303905 1.0000 120 chr4:1060885-1061005 1.0000 120 chr2L:2365188-2365308 1.0000 120 chr2R:8131522-8131642 1.0000 120 chr4:308071-308191 1.0000 120 chrX:13822193-13822313 1.0000 120 chr3L:15988146-15988266 1.0000 120 chr3R:29223390-29223510 1.0000 120 chr4:210246-210366 1.0000 120 chr2R:11825227-11825347 1.0000 120 chrX:5665966-5666086 1.0000 120 chr3R:9039651-9039771 1.0000 120 chr3L:9729927-9730047 1.0000 120 chr3R:28844957-28845077 1.0000 120 chr3R:11581521-11581641 1.0000 120 chr3R:32068480-32068600 1.0000 120 chrX:18863896-18864016 1.0000 120 chr3L:4262511-4262631 1.0000 120 chr3R:27151485-27151605 1.0000 120 chr3L:7510811-7510931 1.0000 120 chr3L:16574464-16574584 1.0000 120 chr2R:9842489-9842609 1.0000 120 chr3L:5765593-5765713 1.0000 120 chr3L:12414797-12414917 1.0000 120 chr3R:16359283-16359403 1.0000 120 chrX:17077945-17078065 1.0000 120 chr3L:18748577-18748697 1.0000 120 chrX:8436889-8437009 1.0000 120 chrX:16286218-16286338 1.0000 120 chr2R:23386407-23386527 1.0000 120 chr3R:7092106-7092226 1.0000 120 chr3L:20226298-20226418 1.0000 120 chr3R:6657433-6657553 1.0000 120 chr3L:6495626-6495746 1.0000 120 chr3R:12408262-12408382 1.0000 120 chr2L:20675989-20676109 1.0000 120 chr3R:31745886-31746006 1.0000 120 chr4:359973-360093 1.0000 120 chrX:7291255-7291375 1.0000 120 chr2R:7387251-7387371 1.0000 120 chr3R:31610967-31611087 1.0000 120 chr3L:17042662-17042782 1.0000 120 chr2L:4971484-4971604 1.0000 120 chr2R:9207446-9207566 1.0000 120 chr3R:20948637-20948757 1.0000 120 chr3R:20593015-20593135 1.0000 120 chr2L:10767947-10768067 1.0000 120 chr2L:156057-156177 1.0000 120 chrX:16547566-16547686 1.0000 120 chr2R:5702037-5702157 1.0000 120 chr3R:22487157-22487277 1.0000 120 chrX:6590760-6590880 1.0000 120 chr3R:15225391-15225511 1.0000 120 chr4:697618-697738 1.0000 120 chrX:11154040-11154160 1.0000 120 chr2L:20757998-20758118 1.0000 120 chrX:13128824-13128944 1.0000 120 chr2R:8067814-8067934 1.0000 120 chr2L:16743155-16743275 1.0000 120 chrX:16441432-16441552 1.0000 120 chr3R:9510275-9510395 1.0000 120 chr3L:3515764-3515884 1.0000 120 chr2R:24086516-24086636 1.0000 120 chr2R:10739849-10739969 1.0000 120 chr2R:9577967-9578087 1.0000 120 chr3L:5152516-5152636 1.0000 120 chr2L:11516978-11517098 1.0000 120 chr2L:6467688-6467808 1.0000 120 chr2L:19054164-19054284 1.0000 120 chr2R:14480979-14481099 1.0000 120 chr2L:21344471-21344591 1.0000 120 chr3R:19648430-19648550 1.0000 120 chr2L:207280-207400 1.0000 120 chr2L:1980784-1980904 1.0000 120 chr3R:24226912-24227032 1.0000 120 chr3R:12630431-12630551 1.0000 120 chr3L:12526684-12526804 1.0000 120 chr2L:17473169-17473289 1.0000 120 chr2R:14981160-14981280 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG12659/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12659.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.308 C 0.196 G 0.196 T 0.3 Background letter frequencies (from file dataset with add-one prior applied): A 0.308 C 0.196 G 0.196 T 0.3 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TATCGATA MEME-1 width = 8 sites = 85 llr = 687 E-value = 2.1e-034 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3a:::9:7 pos.-specific C :::a:::: probability G ::::a::2 matrix T 7:a:::91 bits 2.4 ** 2.1 ** 1.9 ** 1.6 * ** Relative 1.4 ***** Entropy 1.2 ****** (11.7 bits) 0.9 ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24086516-24086636 67 3.03e-05 tctgtgtctc tatcgata CCCGCGTGTG chrX:16441432-16441552 73 3.03e-05 CCCATTCAAC TATCGATA GTCAGACCGC chrX:6590760-6590880 75 3.03e-05 CAGCAGTGTC TATCGATA GGACCAGCTG chr3R:20948637-20948757 102 3.03e-05 ACTTCTAAAA TATCGATA CGTTGGAATT chr3R:12408262-12408382 68 3.03e-05 TTAGTTTGGT TATCGATA CCGCTGTTGG chrX:16286218-16286338 8 3.03e-05 TGCGATA TATCGATA GGTGCAGTGT chr3L:18748577-18748697 62 3.03e-05 TGCAACAACT TATCGATA GTCCCACCCA chr3R:32068480-32068600 36 3.03e-05 ATATATAAGA TATCGATA GCTCGATTAA chr3R:11581521-11581641 35 3.03e-05 CTCTACAAAG TATCGATA ACTTCAGCGA chr4:210246-210366 4 3.03e-05 CAT TATCGATA GTGTTTCTAT chrX:8075424-8075544 64 3.03e-05 TATGATATGT TATCGATA ACAGCAGACG chr2L:11809311-11809431 111 3.03e-05 CTGGAAGAAG TATCGATA TG chr2R:21160517-21160637 100 3.03e-05 AATTCGCTGA TATCGATA TTTTCACGCA chr3L:8544885-8545005 89 3.03e-05 CGCAATGACT TATCGATA GCTGCTTGAC chr2L:18951776-18951896 58 3.03e-05 GACTGGCAAC TATCGATA GTACTGTCGA chr3R:9637570-9637690 61 3.03e-05 TCTTTGCGCA TATCGATA GTTGCTTACC chrX:13287926-13288046 48 3.03e-05 CAAGCATAAC TATCGATA TATCCCACGA chrX:12028992-12029112 97 3.03e-05 CTCACGCGAC TATCGATA GCTACCAGGG chr3L:9137187-9137307 22 3.03e-05 GATAGAAACT TATCGATA GGTTGTCGTG chr3R:8340980-8341100 58 3.03e-05 ATCGATGTAT TATCGATA CATCGATGTC chr3L:18901558-18901678 63 3.03e-05 TTTCTTAGCC TATCGATA AGCGCAGTCA chr2L:13829746-13829866 21 3.03e-05 TATTTCGTTA TATCGATA TTTTTCGATT chr2R:16850332-16850452 33 3.03e-05 GGCAGGGATG TATCGATA ACACAAATCA chr2R:23865343-23865463 48 3.03e-05 AATCCAGCGC TATCGATA ACATTCGGCC chr2L:19542319-19542439 33 3.03e-05 TGGGTAAAAA TATCGATA TTCTGGCGAA chr3R:18226066-18226186 1 3.03e-05 . TATCGATA GGTCGATACG chr2R:17412645-17412765 102 3.03e-05 CAGCACTAGT TATCGATA TAATCAGAGA chr2R:8131323-8131443 58 3.03e-05 TACCGGCAGT TATCGATA GGTAAACCCA chr2L:16743155-16743275 43 6.14e-05 TGAGGTACAT AATCGATA ATAATGGAAT chr4:697618-697738 74 6.14e-05 GCTGAAGTCC AATCGATA CTACAAAATA chr3R:22487157-22487277 12 6.14e-05 GCTTCCGTGA AATCGATA TTTTCTGACC chrX:5665966-5666086 36 6.14e-05 CCGCAATGGC AATCGATA ACTGTACGAC chr2R:11825227-11825347 79 6.14e-05 CTCGATAACA AATCGATA ACAGTGCTGA chr3R:29223390-29223510 31 6.14e-05 GGTGCTAGCA AATCGATA AGCCAGTCCT chr2L:3144788-3144908 83 6.14e-05 CCGTTGGAGC AATCGATA ACTCCCGGGT chr2R:22640187-22640307 16 6.14e-05 CCGATGCAAC AATCGATA GGTCATTCAA chr3L:21175653-21175773 72 6.14e-05 ATGCAGCATT AATCGATA AGTCACAGTG chr2R:13553983-13554103 84 6.14e-05 CACCGGGTGG AATCGATA AACAATTACT chr3R:12425887-12426007 72 6.14e-05 CATCTTATCT AATCGATA ACATGCAAAT chr2L:2236855-2236975 70 6.14e-05 GCCATCGCCG AATCGATA ATCGTGTTGA chr2R:20996157-20996277 1 6.14e-05 . AATCGATA ACAGTGCCAT chr2R:24535398-24535518 72 6.14e-05 CGATAGCTGC AATCGATA TTCGGCGCCT chr2R:11452512-11452632 28 6.14e-05 AACGGCGATT AATCGATA ACCGTAGCGG chr2L:21344471-21344591 98 8.07e-05 TGGCGTGAGG TATCGATG ACCATGCGCT chr3R:15225391-15225511 73 8.07e-05 ACCCCAAATA TATCGATG TAAACCACAA chr2L:10767947-10768067 59 8.07e-05 CTTAGCGAAC TATCGATG TTCGGCTTCT chrX:7291255-7291375 35 8.07e-05 ATCGATAGAT TATCGATG ATGCATTACA chr3L:4262511-4262631 5 8.07e-05 ATGT TATCGATG GAACCAGAAG chr3L:8405222-8405342 67 8.07e-05 CATTTAAGAC TATCGATG TTTTTAGGTT chr2L:203648-203768 99 8.07e-05 GCCGGCGAAA TATCGATG AAACCAAATA chr3R:9725553-9725673 97 8.07e-05 CGCCCGACTG TATCGATG GTTGCCGGAA chrX:635772-635892 84 8.07e-05 TTGCGAAAAA TATCGATG TACTGGTATT chr3R:16359283-16359403 69 1.01e-04 AACGCGTGGT AATCGATG GGCAGCACTG chr3L:16853664-16853784 1 1.01e-04 . AATCGATG ACAGCAATTG chr3R:6657433-6657553 30 1.30e-04 GCAGCTCGCT TATCGATT GCTTGGTGTG chr2R:12037214-12037334 97 1.30e-04 ATCGAATACA TATCGATT GCACCTCCAA chr3L:6173935-6174055 2 1.30e-04 T TATCGATT GTCATTTTTC chr3R:7186921-7187041 109 1.30e-04 CAGTCGCCAT TATCGATT TGTG chr3R:18199687-18199807 89 1.30e-04 TTAATTATAT TATCGATT AATTATGACA chr2R:16221713-16221833 98 1.30e-04 GTCGCCTGGC TATCGATT TGACCCAGGG chr2L:12546641-12546761 100 1.30e-04 TAAATACAAC TATCGATT GTTAAGTTCT chr3R:30039641-30039761 44 1.30e-04 ACAGCAAATT TATCGATT ACGCCGACAG chr2R:9842489-9842609 36 1.50e-04 TACATCGACG CATCGATA TTTAATGGAG chr3R:11244151-11244271 10 1.50e-04 TATCAAGGG CATCGATA GTTTGGCTGC chr3R:12630431-12630551 16 1.89e-04 TGCTGCCACC TATCGACA GCAAAATGCC chrX:14234187-14234307 107 2.09e-04 TGGCAGAATT TACCGATA GTATCG chrX:16005704-16005824 39 2.09e-04 ATTTCTTCCG TACCGATA GCCACAGAAT chr3L:7339440-7339560 80 2.39e-04 ACGAAGTGCG AATCGATT TGGAAAAATC chr3L:15524083-15524203 69 2.89e-04 TAGTCAACTT TATCGAAA CCGATTCATC chrX:11611802-11611922 70 2.89e-04 AAGACACGTT TATCGAAA TTGCCATTTT chr2R:7407808-7407928 42 2.89e-04 AAGTTATTTC TATCGAAA ACAGAGTGAC chr3R:9510275-9510395 61 3.42e-04 ACAGCACATT CATCGATG GTTTGATATT chr2L:156057-156177 67 3.42e-04 TATCTGAATT AATCGCTA ACAGCCATGT chr2R:21168864-21168984 37 3.42e-04 TTTTAAAAAT AATCGCTA TCGGCGGTGT chr3R:11628519-11628639 9 3.42e-04 GATTTAAT AATCGACA CATGCTGCAG chr3R:24226912-24227032 80 3.87e-04 CCAACCAGCC AACCGATA GTGCGATACC chr3L:5152516-5152636 111 3.87e-04 CATGCTCGAT AACCGATA GC chr3L:17042662-17042782 34 3.87e-04 CTTAAACCTT TATCGCTG CTCATTTGTT chrX:18863896-18864016 30 3.87e-04 GTGTGAGCAC TATCGCTG ACCACTAACA chr2L:21142245-21142365 63 3.87e-04 TAGGATCCTA TATCGACG AACGATAGGC chr3R:17687037-17687157 50 3.87e-04 CGAGAGGACT TATCGACG TAGAAATTGG chr2L:17473169-17473289 50 4.29e-04 CAGGCAAAAC TTTCGATA ATGCGGAGAG chr2R:24033934-24034054 9 4.29e-04 ATAGCAGA TTTCGATA GGTGAGAACG chr3L:3303785-3303905 63 4.49e-04 CAGGCAGCCC AATCGGTA ATTTACGGCG chr3R:12431182-12431302 89 4.49e-04 TAAGTTTAGA AATCGGTA GTGTGCCCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24086516-24086636 3e-05 66_[+1]_46 chrX:16441432-16441552 3e-05 72_[+1]_40 chrX:6590760-6590880 3e-05 74_[+1]_38 chr3R:20948637-20948757 3e-05 101_[+1]_11 chr3R:12408262-12408382 3e-05 67_[+1]_45 chrX:16286218-16286338 3e-05 7_[+1]_105 chr3L:18748577-18748697 3e-05 61_[+1]_51 chr3R:32068480-32068600 3e-05 35_[+1]_77 chr3R:11581521-11581641 3e-05 34_[+1]_78 chr4:210246-210366 3e-05 3_[+1]_109 chrX:8075424-8075544 3e-05 63_[+1]_49 chr2L:11809311-11809431 3e-05 110_[+1]_2 chr2R:21160517-21160637 3e-05 99_[+1]_13 chr3L:8544885-8545005 3e-05 88_[+1]_24 chr2L:18951776-18951896 3e-05 57_[+1]_55 chr3R:9637570-9637690 3e-05 60_[+1]_52 chrX:13287926-13288046 3e-05 47_[+1]_65 chrX:12028992-12029112 3e-05 96_[+1]_16 chr3L:9137187-9137307 3e-05 21_[+1]_91 chr3R:8340980-8341100 3e-05 57_[+1]_55 chr3L:18901558-18901678 3e-05 62_[+1]_50 chr2L:13829746-13829866 3e-05 20_[+1]_92 chr2R:16850332-16850452 3e-05 32_[+1]_80 chr2R:23865343-23865463 3e-05 47_[+1]_65 chr2L:19542319-19542439 3e-05 32_[+1]_80 chr3R:18226066-18226186 3e-05 [+1]_112 chr2R:17412645-17412765 3e-05 101_[+1]_11 chr2R:8131323-8131443 3e-05 57_[+1]_55 chr2L:16743155-16743275 6.1e-05 42_[+1]_70 chr4:697618-697738 6.1e-05 73_[+1]_39 chr3R:22487157-22487277 6.1e-05 11_[+1]_101 chrX:5665966-5666086 6.1e-05 35_[+1]_77 chr2R:11825227-11825347 6.1e-05 78_[+1]_34 chr3R:29223390-29223510 6.1e-05 30_[+1]_82 chr2L:3144788-3144908 6.1e-05 82_[+1]_30 chr2R:22640187-22640307 6.1e-05 15_[+1]_97 chr3L:21175653-21175773 6.1e-05 71_[+1]_41 chr2R:13553983-13554103 6.1e-05 83_[+1]_29 chr3R:12425887-12426007 6.1e-05 71_[+1]_41 chr2L:2236855-2236975 6.1e-05 69_[+1]_43 chr2R:20996157-20996277 6.1e-05 [+1]_112 chr2R:24535398-24535518 6.1e-05 71_[+1]_41 chr2R:11452512-11452632 6.1e-05 27_[+1]_85 chr2L:21344471-21344591 8.1e-05 97_[+1]_15 chr3R:15225391-15225511 8.1e-05 72_[+1]_40 chr2L:10767947-10768067 8.1e-05 58_[+1]_54 chrX:7291255-7291375 8.1e-05 34_[+1]_78 chr3L:4262511-4262631 8.1e-05 4_[+1]_108 chr3L:8405222-8405342 8.1e-05 66_[+1]_46 chr2L:203648-203768 8.1e-05 98_[+1]_14 chr3R:9725553-9725673 8.1e-05 96_[+1]_16 chrX:635772-635892 8.1e-05 83_[+1]_29 chr3R:16359283-16359403 0.0001 68_[+1]_44 chr3L:16853664-16853784 0.0001 [+1]_112 chr3R:6657433-6657553 0.00013 29_[+1]_83 chr2R:12037214-12037334 0.00013 96_[+1]_16 chr3L:6173935-6174055 0.00013 1_[+1]_111 chr3R:7186921-7187041 0.00013 108_[+1]_4 chr3R:18199687-18199807 0.00013 88_[+1]_24 chr2R:16221713-16221833 0.00013 97_[+1]_15 chr2L:12546641-12546761 0.00013 99_[+1]_13 chr3R:30039641-30039761 0.00013 43_[+1]_69 chr2R:9842489-9842609 0.00015 35_[+1]_77 chr3R:11244151-11244271 0.00015 9_[+1]_103 chr3R:12630431-12630551 0.00019 15_[+1]_97 chrX:14234187-14234307 0.00021 106_[+1]_6 chrX:16005704-16005824 0.00021 38_[+1]_74 chr3L:7339440-7339560 0.00024 79_[+1]_33 chr3L:15524083-15524203 0.00029 68_[+1]_44 chrX:11611802-11611922 0.00029 69_[+1]_43 chr2R:7407808-7407928 0.00029 41_[+1]_71 chr3R:9510275-9510395 0.00034 60_[+1]_52 chr2L:156057-156177 0.00034 66_[+1]_46 chr2R:21168864-21168984 0.00034 36_[+1]_76 chr3R:11628519-11628639 0.00034 8_[+1]_104 chr3R:24226912-24227032 0.00039 79_[+1]_33 chr3L:5152516-5152636 0.00039 110_[+1]_2 chr3L:17042662-17042782 0.00039 33_[+1]_79 chrX:18863896-18864016 0.00039 29_[+1]_83 chr2L:21142245-21142365 0.00039 62_[+1]_50 chr3R:17687037-17687157 0.00039 49_[+1]_63 chr2L:17473169-17473289 0.00043 49_[+1]_63 chr2R:24033934-24034054 0.00043 8_[+1]_104 chr3L:3303785-3303905 0.00045 62_[+1]_50 chr3R:12431182-12431302 0.00045 88_[+1]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATCGATA width=8 seqs=85 chr2R:24086516-24086636 ( 67) TATCGATA 1 chrX:16441432-16441552 ( 73) TATCGATA 1 chrX:6590760-6590880 ( 75) TATCGATA 1 chr3R:20948637-20948757 ( 102) TATCGATA 1 chr3R:12408262-12408382 ( 68) TATCGATA 1 chrX:16286218-16286338 ( 8) TATCGATA 1 chr3L:18748577-18748697 ( 62) TATCGATA 1 chr3R:32068480-32068600 ( 36) TATCGATA 1 chr3R:11581521-11581641 ( 35) TATCGATA 1 chr4:210246-210366 ( 4) TATCGATA 1 chrX:8075424-8075544 ( 64) TATCGATA 1 chr2L:11809311-11809431 ( 111) TATCGATA 1 chr2R:21160517-21160637 ( 100) TATCGATA 1 chr3L:8544885-8545005 ( 89) TATCGATA 1 chr2L:18951776-18951896 ( 58) TATCGATA 1 chr3R:9637570-9637690 ( 61) TATCGATA 1 chrX:13287926-13288046 ( 48) TATCGATA 1 chrX:12028992-12029112 ( 97) TATCGATA 1 chr3L:9137187-9137307 ( 22) TATCGATA 1 chr3R:8340980-8341100 ( 58) TATCGATA 1 chr3L:18901558-18901678 ( 63) TATCGATA 1 chr2L:13829746-13829866 ( 21) TATCGATA 1 chr2R:16850332-16850452 ( 33) TATCGATA 1 chr2R:23865343-23865463 ( 48) TATCGATA 1 chr2L:19542319-19542439 ( 33) TATCGATA 1 chr3R:18226066-18226186 ( 1) TATCGATA 1 chr2R:17412645-17412765 ( 102) TATCGATA 1 chr2R:8131323-8131443 ( 58) TATCGATA 1 chr2L:16743155-16743275 ( 43) AATCGATA 1 chr4:697618-697738 ( 74) AATCGATA 1 chr3R:22487157-22487277 ( 12) AATCGATA 1 chrX:5665966-5666086 ( 36) AATCGATA 1 chr2R:11825227-11825347 ( 79) AATCGATA 1 chr3R:29223390-29223510 ( 31) AATCGATA 1 chr2L:3144788-3144908 ( 83) AATCGATA 1 chr2R:22640187-22640307 ( 16) AATCGATA 1 chr3L:21175653-21175773 ( 72) AATCGATA 1 chr2R:13553983-13554103 ( 84) AATCGATA 1 chr3R:12425887-12426007 ( 72) AATCGATA 1 chr2L:2236855-2236975 ( 70) AATCGATA 1 chr2R:20996157-20996277 ( 1) AATCGATA 1 chr2R:24535398-24535518 ( 72) AATCGATA 1 chr2R:11452512-11452632 ( 28) AATCGATA 1 chr2L:21344471-21344591 ( 98) TATCGATG 1 chr3R:15225391-15225511 ( 73) TATCGATG 1 chr2L:10767947-10768067 ( 59) TATCGATG 1 chrX:7291255-7291375 ( 35) TATCGATG 1 chr3L:4262511-4262631 ( 5) TATCGATG 1 chr3L:8405222-8405342 ( 67) TATCGATG 1 chr2L:203648-203768 ( 99) TATCGATG 1 chr3R:9725553-9725673 ( 97) TATCGATG 1 chrX:635772-635892 ( 84) TATCGATG 1 chr3R:16359283-16359403 ( 69) AATCGATG 1 chr3L:16853664-16853784 ( 1) AATCGATG 1 chr3R:6657433-6657553 ( 30) TATCGATT 1 chr2R:12037214-12037334 ( 97) TATCGATT 1 chr3L:6173935-6174055 ( 2) TATCGATT 1 chr3R:7186921-7187041 ( 109) TATCGATT 1 chr3R:18199687-18199807 ( 89) TATCGATT 1 chr2R:16221713-16221833 ( 98) TATCGATT 1 chr2L:12546641-12546761 ( 100) TATCGATT 1 chr3R:30039641-30039761 ( 44) TATCGATT 1 chr2R:9842489-9842609 ( 36) CATCGATA 1 chr3R:11244151-11244271 ( 10) CATCGATA 1 chr3R:12630431-12630551 ( 16) TATCGACA 1 chrX:14234187-14234307 ( 107) TACCGATA 1 chrX:16005704-16005824 ( 39) TACCGATA 1 chr3L:7339440-7339560 ( 80) AATCGATT 1 chr3L:15524083-15524203 ( 69) TATCGAAA 1 chrX:11611802-11611922 ( 70) TATCGAAA 1 chr2R:7407808-7407928 ( 42) TATCGAAA 1 chr3R:9510275-9510395 ( 61) CATCGATG 1 chr2L:156057-156177 ( 67) AATCGCTA 1 chr2R:21168864-21168984 ( 37) AATCGCTA 1 chr3R:11628519-11628639 ( 9) AATCGACA 1 chr3R:24226912-24227032 ( 80) AACCGATA 1 chr3L:5152516-5152636 ( 111) AACCGATA 1 chr3L:17042662-17042782 ( 34) TATCGCTG 1 chrX:18863896-18864016 ( 30) TATCGCTG 1 chr2L:21142245-21142365 ( 63) TATCGACG 1 chr3R:17687037-17687157 ( 50) TATCGACG 1 chr2L:17473169-17473289 ( 50) TTTCGATA 1 chr2R:24033934-24034054 ( 9) TTTCGATA 1 chr3L:3303785-3303905 ( 63) AATCGGTA 1 chr3R:12431182-12431302 ( 89) AATCGGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.69078 E= 2.1e-034 -7 -247 -1305 116 166 -1305 -1305 -367 -1305 -206 -1305 167 -1305 235 -1305 -1305 -1305 -1305 235 -1305 159 -206 -306 -1305 -312 -206 -1305 161 120 -1305 -6 -150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 85 E= 2.1e-034 0.294118 0.035294 0.000000 0.670588 0.976471 0.000000 0.000000 0.023529 0.000000 0.047059 0.000000 0.952941 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.929412 0.047059 0.023529 0.000000 0.035294 0.047059 0.000000 0.917647 0.705882 0.000000 0.188235 0.105882 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATCGATA MEME-1 regular expression -------------------------------------------------------------------------------- [TA]ATCGATA -------------------------------------------------------------------------------- Time 7.65 secs. ******************************************************************************** ******************************************************************************** MOTIF GGYCACAC MEME-2 width = 8 sites = 65 llr = 567 E-value = 1.6e-032 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGYCACAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1::38:6: pos.-specific C ::57:a:a probability G 9a::2:2: matrix T 1:5:::1: bits 2.4 * * * 2.1 * * * 1.9 * * * 1.6 ** * * Relative 1.4 ** * * Entropy 1.2 ** *** * (12.6 bits) 0.9 ****** * 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCCACAC consensus TA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYCACAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6291224-6291344 100 5.38e-06 GCGTGTGACT GGCCACAC CGCCAGCCGG chr2L:21221238-21221358 72 5.38e-06 GTGACTGCGC GGCCACAC TGAAACTCAC chr2R:14981160-14981280 100 1.36e-05 ACCGCGCTGC GGTCACAC CGAATTCAGC chr2L:1980784-1980904 9 1.36e-05 GCCGCTGC GGTCACAC TGCGGCCAGG chr2L:156057-156177 109 1.36e-05 TTCGAACTCT GGTCACAC AGCC chr2L:4971484-4971604 38 1.36e-05 GCTGCGCAAC GGTCACAC TAAGCTGTTT chr3R:12408262-12408382 31 1.36e-05 TTGCAGGCAC GGTCACAC CGACACAGTT chr2R:9842489-9842609 78 1.36e-05 TTTATCGCAC GGTCACAC TGCATAACGT chr3R:29223390-29223510 68 1.36e-05 GCAGTGCTAG GGTCACAC TGCATTTTCG chr4:308071-308191 37 1.36e-05 GTCCATGTGC GGTCACAC TGATGACAAA chr3L:20520944-20521064 62 1.36e-05 TTACCACCAC GGTCACAC TAGGTATGAT chr3L:19910194-19910314 81 1.36e-05 AAAGCGAAAC GGTCACAC TGGCGACATG chr2R:24881554-24881674 13 1.36e-05 TTTGTAGCAC GGTCACAC TGCTCAGTTA chr3L:13044437-13044557 13 1.36e-05 CGAAAGCTCC GGTCACAC TGCTCAGTGG chr3R:6646822-6646942 82 1.36e-05 GTCCATCGAC GGTCACAC TTACGCGTGT chr3R:4397909-4398029 29 1.36e-05 CCCTTGTGCT GGTCACAC TTATATCGCA chr2R:13553983-13554103 56 1.36e-05 GCTGCGCTGC GGTCACAC TAAGCGGCAA chr2L:21262905-21263025 58 1.36e-05 TGTACACTGC GGTCACAC TGGTTCGGAC chr3L:8544885-8545005 111 1.36e-05 CTTGACGCAC GGTCACAC TG chr2L:20066284-20066404 84 1.36e-05 GCTTGCAAGC GGTCACAC AGTTGTTATT chr3R:16050741-16050861 71 1.36e-05 TGTGAGTAGC GGTCACAC TGGCGCAACG chr3R:5393851-5393971 100 1.36e-05 CTGTGGCTGC GGTCACAC TGGTCGTGTT chrX:14234187-14234307 86 1.36e-05 GCAAGAGTGT GGTCACAC TGTTGGCAGA chr3R:23820476-23820596 112 1.36e-05 CTCCCGCTGC GGTCACAC T chr2L:12546641-12546761 33 1.36e-05 CACATATAGC GGTCACAC TATACTGTTC chr2L:19526558-19526678 107 1.36e-05 AAAATTGTGC GGTCACAC AGTTCG chrX:2633886-2634006 94 2.23e-05 TTCTGCGCAC GGTCACGC TTTACAGTCG chr2R:5702037-5702157 100 3.41e-05 TCCAGGTCAT GGCAACAC AACCGCTGTT chr3R:11244151-11244271 34 3.41e-05 CTGCTGTTCT GGCCGCAC TTCAAGATAA chr2R:21168864-21168984 91 3.41e-05 CAATACATCT GGCAACAC TGGTCAATAT chr2R:22608259-22608379 31 3.94e-05 CTCCGCCAAC GGCCACTC TATAATGCAG chr3L:7936105-7936225 62 5.76e-05 GGTGTTTTAC GGTCGCAC TTAAGTAATG chr2L:16743155-16743275 21 6.51e-05 TAATCTTATG GGCCGCGC TTTTTGAGGT chrX:16547566-16547686 10 6.51e-05 ATCGAAAGG GGCAACGC TGTCTACACG chr3R:20593015-20593135 95 6.51e-05 CCGTCGTACT GGCAACGC CGACATGAAT chr3R:31610967-31611087 63 6.51e-05 TTGCCCATCT GGCAACGC CCGCCCATGT chr3L:9729927-9730047 55 6.51e-05 CGGTTGATCT GGCAACGC TCTCTTAACC chr2L:6852162-6852282 100 6.51e-05 TCAAATGGTT GGCAACGC GATACGTAGC chr2R:12519070-12519190 68 6.51e-05 GCCTATAGTT GGCAACGC GAGTTCACCC chr2L:203648-203768 79 6.51e-05 TCGACGAGGT GGCAACGC TAGCCGGCGA chr3L:18901558-18901678 2 6.51e-05 C GGCAACGC TTTATCTACT chr2L:6723098-6723218 74 6.51e-05 AGGCCGGTTT GGCCGCGC CCATCGGTCT chr2L:11130626-11130746 38 6.51e-05 TGTTATGTAT GGCAACGC CATTCCTCCG chrX:17077945-17078065 110 7.31e-05 ATTGCAAAAT GGTCACTC TGT chr3R:24650031-24650151 111 7.31e-05 GCCCGCCAAC GGTCACTC TG chr2R:23865343-23865463 86 7.31e-05 GGGCACCTCC GGTCACTC TAACCGGTTA chr3R:6657433-6657553 47 9.01e-05 TGCTTGGTGT GGCAGCAC TGTAGCGTAT chr3R:16359283-16359403 77 9.01e-05 GTAATCGATG GGCAGCAC TGGTGTGCTC chr2R:17412645-17412765 90 9.01e-05 CGAATAATGT GGCAGCAC TAGTTATCGA chr2R:9577967-9578087 75 1.02e-04 GCGAACAATT GGCAACTC TGGTTGGCCA chr2L:10767947-10768067 108 1.02e-04 CTAGCACTGT GGCAACTC GGAAG chr2L:21344267-21344387 52 1.02e-04 ATGTTGGTAT GGCAACTC AAAATCACCT chr2R:25253229-25253349 94 1.18e-04 TCAAAGAGAA AGCCACAC CGGCTTTACA chr3L:9968373-9968493 102 1.18e-04 ACCCACAAGC AGCCACAC CAATCCCAAA chr3R:11679669-11679789 87 1.18e-04 TTAGTTAGAC AGCCACAC TGGCGTGGAG chr2L:207280-207400 51 1.30e-04 AAACTAAGGC TGCCACAC CGATGGAAAA chr3L:20226298-20226418 109 1.30e-04 GTTGTGCGGC TGCCACAC CGCC chr2R:11825227-11825347 60 1.30e-04 TGGGGAGTAA GGCAGCGC GCTCGATAAC chrX:13744657-13744777 73 1.30e-04 GCAGCGATCT GGCAGCGC TCGTCTGCAA chr3R:12425887-12426007 18 1.30e-04 TAGCTGATGT TGCCACAC TGCCGGAAGT chrX:14832490-14832610 41 1.30e-04 TAAAAAGAAC TGCCACAC TTTTCACTTT chr2R:12200809-12200929 80 1.51e-04 TGATGAAGGC GGTAACTC AGGCTCTGTT chr3L:7339440-7339560 32 1.64e-04 AGTCAGACTC AGTCACAC TCTTCCAGAC chr3L:12850007-12850127 108 1.92e-04 TGCTCGTACT GGTCACCC TAAAA chr2R:14480979-14481099 74 2.38e-04 ATTCACTGTT AGCCGCAC GCTCTGTTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYCACAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6291224-6291344 5.4e-06 99_[+2]_13 chr2L:21221238-21221358 5.4e-06 71_[+2]_41 chr2R:14981160-14981280 1.4e-05 99_[+2]_13 chr2L:1980784-1980904 1.4e-05 8_[+2]_104 chr2L:156057-156177 1.4e-05 108_[+2]_4 chr2L:4971484-4971604 1.4e-05 37_[+2]_75 chr3R:12408262-12408382 1.4e-05 30_[+2]_82 chr2R:9842489-9842609 1.4e-05 77_[+2]_35 chr3R:29223390-29223510 1.4e-05 67_[+2]_45 chr4:308071-308191 1.4e-05 36_[+2]_76 chr3L:20520944-20521064 1.4e-05 61_[+2]_51 chr3L:19910194-19910314 1.4e-05 80_[+2]_32 chr2R:24881554-24881674 1.4e-05 12_[+2]_100 chr3L:13044437-13044557 1.4e-05 12_[+2]_100 chr3R:6646822-6646942 1.4e-05 81_[+2]_31 chr3R:4397909-4398029 1.4e-05 28_[+2]_84 chr2R:13553983-13554103 1.4e-05 55_[+2]_57 chr2L:21262905-21263025 1.4e-05 57_[+2]_55 chr3L:8544885-8545005 1.4e-05 110_[+2]_2 chr2L:20066284-20066404 1.4e-05 83_[+2]_29 chr3R:16050741-16050861 1.4e-05 70_[+2]_42 chr3R:5393851-5393971 1.4e-05 99_[+2]_13 chrX:14234187-14234307 1.4e-05 85_[+2]_27 chr3R:23820476-23820596 1.4e-05 111_[+2]_1 chr2L:12546641-12546761 1.4e-05 32_[+2]_80 chr2L:19526558-19526678 1.4e-05 106_[+2]_6 chrX:2633886-2634006 2.2e-05 93_[+2]_19 chr2R:5702037-5702157 3.4e-05 99_[+2]_13 chr3R:11244151-11244271 3.4e-05 33_[+2]_79 chr2R:21168864-21168984 3.4e-05 90_[+2]_22 chr2R:22608259-22608379 3.9e-05 30_[+2]_82 chr3L:7936105-7936225 5.8e-05 61_[+2]_51 chr2L:16743155-16743275 6.5e-05 20_[+2]_92 chrX:16547566-16547686 6.5e-05 9_[+2]_103 chr3R:20593015-20593135 6.5e-05 94_[+2]_18 chr3R:31610967-31611087 6.5e-05 62_[+2]_50 chr3L:9729927-9730047 6.5e-05 54_[+2]_58 chr2L:6852162-6852282 6.5e-05 99_[+2]_13 chr2R:12519070-12519190 6.5e-05 67_[+2]_45 chr2L:203648-203768 6.5e-05 78_[+2]_34 chr3L:18901558-18901678 6.5e-05 1_[+2]_111 chr2L:6723098-6723218 6.5e-05 73_[+2]_39 chr2L:11130626-11130746 6.5e-05 37_[+2]_75 chrX:17077945-17078065 7.3e-05 109_[+2]_3 chr3R:24650031-24650151 7.3e-05 110_[+2]_2 chr2R:23865343-23865463 7.3e-05 85_[+2]_27 chr3R:6657433-6657553 9e-05 46_[+2]_66 chr3R:16359283-16359403 9e-05 76_[+2]_36 chr2R:17412645-17412765 9e-05 89_[+2]_23 chr2R:9577967-9578087 0.0001 74_[+2]_38 chr2L:10767947-10768067 0.0001 107_[+2]_5 chr2L:21344267-21344387 0.0001 51_[+2]_61 chr2R:25253229-25253349 0.00012 93_[+2]_19 chr3L:9968373-9968493 0.00012 101_[+2]_11 chr3R:11679669-11679789 0.00012 86_[+2]_26 chr2L:207280-207400 0.00013 50_[+2]_62 chr3L:20226298-20226418 0.00013 108_[+2]_4 chr2R:11825227-11825347 0.00013 59_[+2]_53 chrX:13744657-13744777 0.00013 72_[+2]_40 chr3R:12425887-12426007 0.00013 17_[+2]_95 chrX:14832490-14832610 0.00013 40_[+2]_72 chr2R:12200809-12200929 0.00015 79_[+2]_33 chr3L:7339440-7339560 0.00016 31_[+2]_81 chr3L:12850007-12850127 0.00019 107_[+2]_5 chr2R:14480979-14481099 0.00024 73_[+2]_39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYCACAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGYCACAC width=8 seqs=65 chrX:6291224-6291344 ( 100) GGCCACAC 1 chr2L:21221238-21221358 ( 72) GGCCACAC 1 chr2R:14981160-14981280 ( 100) GGTCACAC 1 chr2L:1980784-1980904 ( 9) GGTCACAC 1 chr2L:156057-156177 ( 109) GGTCACAC 1 chr2L:4971484-4971604 ( 38) GGTCACAC 1 chr3R:12408262-12408382 ( 31) GGTCACAC 1 chr2R:9842489-9842609 ( 78) GGTCACAC 1 chr3R:29223390-29223510 ( 68) GGTCACAC 1 chr4:308071-308191 ( 37) GGTCACAC 1 chr3L:20520944-20521064 ( 62) GGTCACAC 1 chr3L:19910194-19910314 ( 81) GGTCACAC 1 chr2R:24881554-24881674 ( 13) GGTCACAC 1 chr3L:13044437-13044557 ( 13) GGTCACAC 1 chr3R:6646822-6646942 ( 82) GGTCACAC 1 chr3R:4397909-4398029 ( 29) GGTCACAC 1 chr2R:13553983-13554103 ( 56) GGTCACAC 1 chr2L:21262905-21263025 ( 58) GGTCACAC 1 chr3L:8544885-8545005 ( 111) GGTCACAC 1 chr2L:20066284-20066404 ( 84) GGTCACAC 1 chr3R:16050741-16050861 ( 71) GGTCACAC 1 chr3R:5393851-5393971 ( 100) GGTCACAC 1 chrX:14234187-14234307 ( 86) GGTCACAC 1 chr3R:23820476-23820596 ( 112) GGTCACAC 1 chr2L:12546641-12546761 ( 33) GGTCACAC 1 chr2L:19526558-19526678 ( 107) GGTCACAC 1 chrX:2633886-2634006 ( 94) GGTCACGC 1 chr2R:5702037-5702157 ( 100) GGCAACAC 1 chr3R:11244151-11244271 ( 34) GGCCGCAC 1 chr2R:21168864-21168984 ( 91) GGCAACAC 1 chr2R:22608259-22608379 ( 31) GGCCACTC 1 chr3L:7936105-7936225 ( 62) GGTCGCAC 1 chr2L:16743155-16743275 ( 21) GGCCGCGC 1 chrX:16547566-16547686 ( 10) GGCAACGC 1 chr3R:20593015-20593135 ( 95) GGCAACGC 1 chr3R:31610967-31611087 ( 63) GGCAACGC 1 chr3L:9729927-9730047 ( 55) GGCAACGC 1 chr2L:6852162-6852282 ( 100) GGCAACGC 1 chr2R:12519070-12519190 ( 68) GGCAACGC 1 chr2L:203648-203768 ( 79) GGCAACGC 1 chr3L:18901558-18901678 ( 2) GGCAACGC 1 chr2L:6723098-6723218 ( 74) GGCCGCGC 1 chr2L:11130626-11130746 ( 38) GGCAACGC 1 chrX:17077945-17078065 ( 110) GGTCACTC 1 chr3R:24650031-24650151 ( 111) GGTCACTC 1 chr2R:23865343-23865463 ( 86) GGTCACTC 1 chr3R:6657433-6657553 ( 47) GGCAGCAC 1 chr3R:16359283-16359403 ( 77) GGCAGCAC 1 chr2R:17412645-17412765 ( 90) GGCAGCAC 1 chr2R:9577967-9578087 ( 75) GGCAACTC 1 chr2L:10767947-10768067 ( 108) GGCAACTC 1 chr2L:21344267-21344387 ( 52) GGCAACTC 1 chr2R:25253229-25253349 ( 94) AGCCACAC 1 chr3L:9968373-9968493 ( 102) AGCCACAC 1 chr3R:11679669-11679789 ( 87) AGCCACAC 1 chr2L:207280-207400 ( 51) TGCCACAC 1 chr3L:20226298-20226418 ( 109) TGCCACAC 1 chr2R:11825227-11825347 ( 60) GGCAGCGC 1 chrX:13744657-13744777 ( 73) GGCAGCGC 1 chr3R:12425887-12426007 ( 18) TGCCACAC 1 chrX:14832490-14832610 ( 41) TGCCACAC 1 chr2R:12200809-12200929 ( 80) GGTAACTC 1 chr3L:7339440-7339560 ( 32) AGTCACAC 1 chr3L:12850007-12850127 ( 108) GGTCACCC 1 chr2R:14480979-14481099 ( 74) AGCCGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYCACAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.51346 E= 1.6e-032 -200 -1267 214 -228 -1267 -1267 235 -1267 -1267 137 -1267 71 0 182 -1267 -1267 146 -1267 -35 -1267 -1267 235 -1267 -1267 107 -367 14 -129 -1267 235 -1267 -1267 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYCACAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 1.6e-032 0.076923 0.000000 0.861538 0.061538 0.000000 0.000000 1.000000 0.000000 0.000000 0.507692 0.000000 0.492308 0.307692 0.692308 0.000000 0.000000 0.846154 0.000000 0.153846 0.000000 0.000000 1.000000 0.000000 0.000000 0.646154 0.015385 0.215385 0.123077 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYCACAC MEME-2 regular expression -------------------------------------------------------------------------------- GG[CT][CA]AC[AG]C -------------------------------------------------------------------------------- Time 13.96 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGACC MEME-3 width = 8 sites = 34 llr = 324 E-value = 4.8e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 111::8:: pos.-specific C :::::1aa probability G 919:a2:: matrix T :8:9:::: bits 2.4 * ** 2.1 * ** 1.9 * * ** 1.6 * * * ** Relative 1.4 * *** ** Entropy 1.2 * *** ** (13.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:12526684-12526804 22 8.02e-06 CAATCAGACG GTGTGACC GGCTGAGTTT chr2L:11516978-11517098 74 8.02e-06 AACGTCACCA GTGTGACC GCGGAGTGAC chr3L:3515764-3515884 14 8.02e-06 TGGCGATGTG GTGTGACC AAATTCGTGC chrX:13128824-13128944 64 8.02e-06 TATTATTTCG GTGTGACC GTAGCTATAA chr3R:20593015-20593135 31 8.02e-06 CGCGTGTTTA GTGTGACC TCAGCTGCTT chr3L:12414797-12414917 15 8.02e-06 GGGTTTGCCA GTGTGACC ACGAACGTTT chr3L:19586150-19586270 80 8.02e-06 AAGTAAAGCA GTGTGACC ATCTCTGAAA chr2R:16271927-16272047 38 8.02e-06 CTGTGCGCCA GTGTGACC GTTCTGCTCG chr3R:8716158-8716278 29 8.02e-06 GTGATTTCCA GTGTGACC GGAACTCGCA chr3L:9134479-9134599 50 8.02e-06 ACTCACGACA GTGTGACC TTGCTGTGCG chr2L:11130626-11130746 87 8.02e-06 CCGCTAGCAA GTGTGACC GTGGGTTGGC chr3L:19598784-19598904 5 8.02e-06 GACA GTGTGACC TTGCGGCGGA chr2R:21168665-21168785 42 8.02e-06 GTTAATGGCA GTGTGACC GTATGTGGTG chr4:210246-210366 22 1.31e-05 GTGTTTCTAT GTGTGGCC CAGCCAGATA chr2R:23862575-23862695 17 1.31e-05 CGTATGCGCA GTGTGGCC GAACAGGGCT chrX:17627792-17627912 76 1.31e-05 GTCACGACCA GTGTGGCC GAAGGCGCAG chr3L:20226298-20226418 61 2.14e-05 TGCGCGCGCA GAGTGACC ATGTGTACCC chr2R:12200809-12200929 5 2.14e-05 TTCA GAGTGACC GTTTGCTCAA chr2R:7407808-7407928 53 2.14e-05 ATCGAAAACA GAGTGACC GTTGCCGAAA chr3R:9725553-9725673 47 2.14e-05 GAGACTTTCA GAGTGACC GTACTGGCTA chr3R:15225391-15225511 23 3.91e-05 ATGCACTTTA GTGTGCCC GCAACTGCAA chr3L:8544885-8545005 47 3.91e-05 ttttgtaatt atGTGACC CAAACGCTAA chr4:443763-443883 113 3.91e-05 CTACCCTTAT ATGTGACC chr3R:12431182-12431302 97 3.91e-05 GAAATCGGTA GTGTGCCC ATTTGTTTAG chr2L:21142245-21142365 111 4.43e-05 AATCGAAGGA GGGTGACC GT chr3L:21539804-21539924 8 4.43e-05 CGGTCCA GGGTGACC ATTTCGTGCC chr3L:18748577-18748697 93 5.69e-05 CGATAGACTA GTATGACC GCACCGCACT chr3L:15524083-15524203 16 5.69e-05 TGTGGGATTT GTATGACC GTGTCTGACT chr2R:5250941-5251061 86 5.69e-05 GTCGGAAATT GTATGACC GATATATTCG chr2L:17473169-17473289 31 6.21e-05 CGGAATTTCA GTGCGACC GCAGGCAAAA chr2L:207280-207400 79 7.54e-05 ATGTCACGGA ATGTGGCC ATTTTTACCT chr3R:15804140-15804260 30 7.54e-05 TTGGCGCTCA ATGTGGCC GCAGAAAAAT chr2L:6914077-6914197 20 7.54e-05 TAGTCTAATA ATGTGGCC GTACCCGATG chrX:7291255-7291375 61 8.70e-05 CAGGAAATCG GTGAGACC GTTCGCGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:12526684-12526804 8e-06 21_[+3]_91 chr2L:11516978-11517098 8e-06 73_[+3]_39 chr3L:3515764-3515884 8e-06 13_[+3]_99 chrX:13128824-13128944 8e-06 63_[+3]_49 chr3R:20593015-20593135 8e-06 30_[+3]_82 chr3L:12414797-12414917 8e-06 14_[+3]_98 chr3L:19586150-19586270 8e-06 79_[+3]_33 chr2R:16271927-16272047 8e-06 37_[+3]_75 chr3R:8716158-8716278 8e-06 28_[+3]_84 chr3L:9134479-9134599 8e-06 49_[+3]_63 chr2L:11130626-11130746 8e-06 86_[+3]_26 chr3L:19598784-19598904 8e-06 4_[+3]_108 chr2R:21168665-21168785 8e-06 41_[+3]_71 chr4:210246-210366 1.3e-05 21_[+3]_91 chr2R:23862575-23862695 1.3e-05 16_[+3]_96 chrX:17627792-17627912 1.3e-05 75_[+3]_37 chr3L:20226298-20226418 2.1e-05 60_[+3]_52 chr2R:12200809-12200929 2.1e-05 4_[+3]_108 chr2R:7407808-7407928 2.1e-05 52_[+3]_60 chr3R:9725553-9725673 2.1e-05 46_[+3]_66 chr3R:15225391-15225511 3.9e-05 22_[+3]_90 chr3L:8544885-8545005 3.9e-05 46_[+3]_66 chr4:443763-443883 3.9e-05 112_[+3] chr3R:12431182-12431302 3.9e-05 96_[+3]_16 chr2L:21142245-21142365 4.4e-05 110_[+3]_2 chr3L:21539804-21539924 4.4e-05 7_[+3]_105 chr3L:18748577-18748697 5.7e-05 92_[+3]_20 chr3L:15524083-15524203 5.7e-05 15_[+3]_97 chr2R:5250941-5251061 5.7e-05 85_[+3]_27 chr2L:17473169-17473289 6.2e-05 30_[+3]_82 chr2L:207280-207400 7.5e-05 78_[+3]_34 chr3R:15804140-15804260 7.5e-05 29_[+3]_83 chr2L:6914077-6914197 7.5e-05 19_[+3]_93 chrX:7291255-7291375 8.7e-05 60_[+3]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGACC width=8 seqs=34 chr3L:12526684-12526804 ( 22) GTGTGACC 1 chr2L:11516978-11517098 ( 74) GTGTGACC 1 chr3L:3515764-3515884 ( 14) GTGTGACC 1 chrX:13128824-13128944 ( 64) GTGTGACC 1 chr3R:20593015-20593135 ( 31) GTGTGACC 1 chr3L:12414797-12414917 ( 15) GTGTGACC 1 chr3L:19586150-19586270 ( 80) GTGTGACC 1 chr2R:16271927-16272047 ( 38) GTGTGACC 1 chr3R:8716158-8716278 ( 29) GTGTGACC 1 chr3L:9134479-9134599 ( 50) GTGTGACC 1 chr2L:11130626-11130746 ( 87) GTGTGACC 1 chr3L:19598784-19598904 ( 5) GTGTGACC 1 chr2R:21168665-21168785 ( 42) GTGTGACC 1 chr4:210246-210366 ( 22) GTGTGGCC 1 chr2R:23862575-23862695 ( 17) GTGTGGCC 1 chrX:17627792-17627912 ( 76) GTGTGGCC 1 chr3L:20226298-20226418 ( 61) GAGTGACC 1 chr2R:12200809-12200929 ( 5) GAGTGACC 1 chr2R:7407808-7407928 ( 53) GAGTGACC 1 chr3R:9725553-9725673 ( 47) GAGTGACC 1 chr3R:15225391-15225511 ( 23) GTGTGCCC 1 chr3L:8544885-8545005 ( 47) ATGTGACC 1 chr4:443763-443883 ( 113) ATGTGACC 1 chr3R:12431182-12431302 ( 97) GTGTGCCC 1 chr2L:21142245-21142365 ( 111) GGGTGACC 1 chr3L:21539804-21539924 ( 8) GGGTGACC 1 chr3L:18748577-18748697 ( 93) GTATGACC 1 chr3L:15524083-15524203 ( 16) GTATGACC 1 chr2R:5250941-5251061 ( 86) GTATGACC 1 chr2L:17473169-17473289 ( 31) GTGCGACC 1 chr2L:207280-207400 ( 79) ATGTGGCC 1 chr3R:15804140-15804260 ( 30) ATGTGGCC 1 chr2L:6914077-6914197 ( 20) ATGTGGCC 1 chrX:7291255-7291375 ( 61) GTGAGACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.4922 E= 4.8e-013 -107 -1173 212 -1173 -139 -1173 -173 146 -180 -1173 222 -1173 -338 -273 -1173 165 -1173 -1173 235 -1173 131 -174 -15 -1173 -1173 235 -1173 -1173 -1173 235 -1173 -1173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 4.8e-013 0.147059 0.000000 0.852941 0.000000 0.117647 0.000000 0.058824 0.823529 0.088235 0.000000 0.911765 0.000000 0.029412 0.029412 0.000000 0.941176 0.000000 0.000000 1.000000 0.000000 0.764706 0.058824 0.176471 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGACC MEME-3 regular expression -------------------------------------------------------------------------------- GTGTGACC -------------------------------------------------------------------------------- Time 20.15 secs. ******************************************************************************** ******************************************************************************** MOTIF AAATACCA MEME-4 width = 8 sites = 33 llr = 295 E-value = 1.9e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAATACCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A a8a:9::7 pos.-specific C :::::aa1 probability G ::::1::2 matrix T :2:a:::: bits 2.4 ** 2.1 ** 1.9 ** 1.6 * ** ** Relative 1.4 * ** ** Entropy 1.2 * ***** (12.9 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAATACCA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATACCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14981160-14981280 35 3.19e-05 AATACAATAA AAATACCA AATGTTTATT chr4:697618-697738 87 3.19e-05 CGATACTACA AAATACCA AAATACACAG chr2R:5702037-5702157 29 3.19e-05 CTTGTCCTAA AAATACCA TGCACTATTT chr3L:15988146-15988266 41 3.19e-05 CTCTTCTTAA AAATACCA AACAAGTTGC chr2R:15934692-15934812 55 3.19e-05 TTCATCGATG AAATACCA ACTTAATGGG chr2L:19791938-19792058 10 3.19e-05 ACATACAAG AAATACCA AATACAAATA chr2R:16271927-16272047 63 3.19e-05 TCGCCCAGCT AAATACCA ATCGCCATTT chr2R:20587379-20587499 69 3.19e-05 CAAAATGAAT AAATACCA CCGAACAGTA chr2R:12200809-12200929 59 3.19e-05 AGCGGTGCCG AAATACCA AGCTGATGAA chr2L:6914077-6914197 45 3.19e-05 ATGCGCAATA AAATACCA GCTCTGACTG chr3L:9134479-9134599 21 3.19e-05 CAAAAAAAAA AAATACCA AATAACGCCT chr3R:5393851-5393971 1 3.19e-05 . AAATACCA AAAACCTATT chr3R:22462071-22462191 10 3.19e-05 CATTGCCAA AAATACCA GAGCGATGTC chr2R:23862575-23862695 41 3.19e-05 GGCTAGTGAG AAATACCA GCCGGCGGGT chr2R:7407808-7407928 11 3.19e-05 AAATGCCAAA AAATACCA GGCCTGCGAG chrX:635772-635892 9 3.19e-05 TTTTGGGG AAATACCA AATATACTAG chr3R:11244151-11244271 52 5.23e-05 TTCAAGATAA AAATACCG AAAGCCGCTA chr3R:15804140-15804260 44 5.23e-05 GGCCGCAGAA AAATACCG CAAAACGACA chr3L:7936105-7936225 9 5.23e-05 TACCCTGA AAATACCG ATCACCTTGC chr2R:20996157-20996277 74 5.23e-05 GTCACTAAAA AAATACCG TACAAAACAT chr2R:8131323-8131443 45 5.23e-05 CTGCTTTCTT AAATACCG GCAGTTATCG chrX:6291224-6291344 54 8.34e-05 TTCATTTGGC ATATACCA AATGCGGTGC chr2R:17683468-17683588 49 8.34e-05 GCCTCCTAAA ATATACCA CACAAATATA chr2L:13829746-13829866 83 8.34e-05 CACGTTCGGT ATATACCA GAGGGAATAA chrX:16005704-16005824 94 8.34e-05 AATCATCGAA ATATACCA CACACCCAAC chr3R:13011335-13011455 60 8.34e-05 GTATAATCAT ATATACCA TTAATACTTT chr3R:12630431-12630551 27 1.04e-04 ATCGACAGCA AAATGCCA ATTTGACCAT chr2R:7387251-7387371 74 1.04e-04 GTTTTTTTTT AAATGCCA AATTGCTGCC chr2L:207280-207400 105 1.24e-04 CTCGGTGATA AAATACCC CCATACAA chr3L:12414797-12414917 60 1.24e-04 GTGTGGTCGA AAATACCC TAAAATGCAT chr3L:12526684-12526804 95 1.44e-04 ATTTGCATAG ATATACCG AGTATTAATA chr3R:20593015-20593135 80 1.57e-04 ACAGCCCTCG AAATGCCG TCGTACTGGC chr3R:31745886-31746006 102 1.57e-04 CCCGAATACG AAATGCCG GCAAGGTGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATACCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14981160-14981280 3.2e-05 34_[+4]_78 chr4:697618-697738 3.2e-05 86_[+4]_26 chr2R:5702037-5702157 3.2e-05 28_[+4]_84 chr3L:15988146-15988266 3.2e-05 40_[+4]_72 chr2R:15934692-15934812 3.2e-05 54_[+4]_58 chr2L:19791938-19792058 3.2e-05 9_[+4]_103 chr2R:16271927-16272047 3.2e-05 62_[+4]_50 chr2R:20587379-20587499 3.2e-05 68_[+4]_44 chr2R:12200809-12200929 3.2e-05 58_[+4]_54 chr2L:6914077-6914197 3.2e-05 44_[+4]_68 chr3L:9134479-9134599 3.2e-05 20_[+4]_92 chr3R:5393851-5393971 3.2e-05 [+4]_112 chr3R:22462071-22462191 3.2e-05 9_[+4]_103 chr2R:23862575-23862695 3.2e-05 40_[+4]_72 chr2R:7407808-7407928 3.2e-05 10_[+4]_102 chrX:635772-635892 3.2e-05 8_[+4]_104 chr3R:11244151-11244271 5.2e-05 51_[+4]_61 chr3R:15804140-15804260 5.2e-05 43_[+4]_69 chr3L:7936105-7936225 5.2e-05 8_[+4]_104 chr2R:20996157-20996277 5.2e-05 73_[+4]_39 chr2R:8131323-8131443 5.2e-05 44_[+4]_68 chrX:6291224-6291344 8.3e-05 53_[+4]_59 chr2R:17683468-17683588 8.3e-05 48_[+4]_64 chr2L:13829746-13829866 8.3e-05 82_[+4]_30 chrX:16005704-16005824 8.3e-05 93_[+4]_19 chr3R:13011335-13011455 8.3e-05 59_[+4]_53 chr3R:12630431-12630551 0.0001 26_[+4]_86 chr2R:7387251-7387371 0.0001 73_[+4]_39 chr2L:207280-207400 0.00012 104_[+4]_8 chr3L:12414797-12414917 0.00012 59_[+4]_53 chr3L:12526684-12526804 0.00014 94_[+4]_18 chr3R:20593015-20593135 0.00016 79_[+4]_33 chr3R:31745886-31746006 0.00016 101_[+4]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATACCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAATACCA width=8 seqs=33 chr2R:14981160-14981280 ( 35) AAATACCA 1 chr4:697618-697738 ( 87) AAATACCA 1 chr2R:5702037-5702157 ( 29) AAATACCA 1 chr3L:15988146-15988266 ( 41) AAATACCA 1 chr2R:15934692-15934812 ( 55) AAATACCA 1 chr2L:19791938-19792058 ( 10) AAATACCA 1 chr2R:16271927-16272047 ( 63) AAATACCA 1 chr2R:20587379-20587499 ( 69) AAATACCA 1 chr2R:12200809-12200929 ( 59) AAATACCA 1 chr2L:6914077-6914197 ( 45) AAATACCA 1 chr3L:9134479-9134599 ( 21) AAATACCA 1 chr3R:5393851-5393971 ( 1) AAATACCA 1 chr3R:22462071-22462191 ( 10) AAATACCA 1 chr2R:23862575-23862695 ( 41) AAATACCA 1 chr2R:7407808-7407928 ( 11) AAATACCA 1 chrX:635772-635892 ( 9) AAATACCA 1 chr3R:11244151-11244271 ( 52) AAATACCG 1 chr3R:15804140-15804260 ( 44) AAATACCG 1 chr3L:7936105-7936225 ( 9) AAATACCG 1 chr2R:20996157-20996277 ( 74) AAATACCG 1 chr2R:8131323-8131443 ( 45) AAATACCG 1 chrX:6291224-6291344 ( 54) ATATACCA 1 chr2R:17683468-17683588 ( 49) ATATACCA 1 chr2L:13829746-13829866 ( 83) ATATACCA 1 chrX:16005704-16005824 ( 94) ATATACCA 1 chr3R:13011335-13011455 ( 60) ATATACCA 1 chr3R:12630431-12630551 ( 27) AAATGCCA 1 chr2R:7387251-7387371 ( 74) AAATGCCA 1 chr2L:207280-207400 ( 105) AAATACCC 1 chr3L:12414797-12414917 ( 60) AAATACCC 1 chr3L:12526684-12526804 ( 95) ATATACCG 1 chr3R:20593015-20593135 ( 80) AAATGCCG 1 chr3R:31745886-31746006 ( 102) AAATGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATACCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.507 E= 1.9e-002 170 -1169 -1169 -1169 141 -1169 -1169 -72 170 -1169 -1169 -1169 -1169 -1169 -1169 174 151 -1169 -69 -1169 -1169 235 -1169 -1169 -1169 235 -1169 -1169 118 -169 31 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATACCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.9e-002 1.000000 0.000000 0.000000 0.000000 0.818182 0.000000 0.000000 0.181818 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.878788 0.000000 0.121212 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.696970 0.060606 0.242424 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAATACCA MEME-4 regular expression -------------------------------------------------------------------------------- AAATACC[AG] -------------------------------------------------------------------------------- Time 26.28 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGDGYTG MEME-5 width = 8 sites = 36 llr = 310 E-value = 6.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGDGYTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:3:1:: pos.-specific C 7::1:4:: probability G ::a3a::a matrix T 3::3:4a: bits 2.4 * * * 2.1 * * * 1.9 * * * 1.6 ** * ** Relative 1.4 ** * ** Entropy 1.2 *** * ** (12.4 bits) 0.9 *** * ** 0.7 *** **** 0.5 *** **** 0.2 *** **** 0.0 -------- Multilevel CAGAGCTG consensus T G T sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGDGYTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:10970288-10970408 109 5.24e-06 TTTTCTTTAC CAGGGCTG AAAC chr3R:18199687-18199807 105 5.24e-06 TTAATTATGA CAGGGCTG CCAGCGTG chr3R:13011335-13011455 11 5.24e-06 CACACTTCTT CAGGGCTG CATTAAGTAC chr2R:19437252-19437372 17 5.24e-06 AATAAGCCAG CAGGGCTG TTCCCGAATT chr2L:13813718-13813838 78 5.24e-06 AGCATCGAAT CAGGGCTG GTCGCGAGCA chr3R:24226912-24227032 30 2.15e-05 AGTGATTGGC CAGGGTTG CATTGCGTTG chr2L:4971484-4971604 7 2.15e-05 TAATTC CAGGGTTG CGACATAGAG chr3L:17042662-17042782 103 2.15e-05 ACGGTGGTAG CAGAGCTG CCAACTTGTT chr3R:24650031-24650151 9 2.15e-05 GGCAGGGG CAGGGTTG TCAGGCTGTG chr2R:17412645-17412765 39 2.15e-05 AATTTTGATG CAGAGCTG CCAACCCATG chr2R:11825227-11825347 88 2.95e-05 AAATCGATAA CAGTGCTG ATATATTTTT chr2L:13829746-13829866 60 2.95e-05 GCTAAGGTAC CAGTGCTG TTACGCACGT chr2L:2236855-2236975 94 3.47e-05 TTGAACTTAA CAGCGCTG CTGTTAGCGA chr2R:14480979-14481099 105 4.73e-05 TGGTAACTTT CAGAGTTG CCAGATCA chr3R:7092106-7092226 70 4.73e-05 TATTTTACAC CAGAGTTG CCAGGTAACA chr3R:29748862-29748982 7 4.73e-05 ACCGAG CAGAGTTG CCACCCAGTT chr3L:9729927-9730047 19 5.96e-05 CTCACTTTGC CAGTGTTG TAAAACCGGG chr2L:10277462-10277582 26 5.96e-05 ATATTAGTGG CAGTGTTG TTTCGTGTAG chrX:11816498-11816618 18 5.96e-05 AATGCAGCGC CAGTGTTG CCAAATGGCG chrX:17627792-17627912 91 5.96e-05 GCCGAAGGCG CAGTGTTG ATTAAGTCCA chr3L:1302822-1302942 85 6.76e-05 CTGTTTTTAG TAGGGCTG GGCCCCAGAA chr2R:14981160-14981280 3 7.57e-05 GC CAGCGTTG TAATGAAATA chr3L:19910194-19910314 49 1.01e-04 GTGAGAGAAC TAGGGTTG CACCCCGATA chr2L:11809311-11809431 96 1.01e-04 AAGCAGTGTA TAGAGCTG GAAGAAGTAT chr2R:21160517-21160637 40 1.01e-04 GCTTCGAAAT TAGAGCTG GGCCAAAGTC chr3R:9725553-9725673 63 1.01e-04 CCGTACTGGC TAGAGCTG GGACGAAAAC chr2R:16850332-16850452 25 1.21e-04 AACGAGTTGG CAGGGATG TATCGATAAC chrX:14234187-14234307 62 1.29e-04 ATTGGAAAAT TAGCGCTG AGCAATGCAA chr2R:11452512-11452632 8 1.29e-04 GGCTATT TAGCGCTG CCAACGGCGA chr3R:9510275-9510395 29 1.48e-04 AAGTCTATGT TAGAGTTG ACAGTGATAC chr3R:16050741-16050861 55 1.48e-04 TAGGGGATGC TAGAGTTG TGAGTAGCGG chr3L:15988146-15988266 73 1.67e-04 TTCCCCGCGA TAGTGTTG GAAGTCGCAC chr2R:22641320-22641440 109 1.80e-04 ATGGCCGTTT CAGAGATG GAAG chr2R:10739849-10739969 64 2.05e-04 ACCACAAACA TAGCGTTG CCATACTATA chr2L:10226795-10226915 92 2.05e-04 ATATCGCAGT CAGTGATG ATGTCTTGGC chr3L:9864315-9864435 14 2.05e-04 CACCGTTTAT CAGTGATG GTACTGCATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGDGYTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10970288-10970408 5.2e-06 108_[+5]_4 chr3R:18199687-18199807 5.2e-06 104_[+5]_8 chr3R:13011335-13011455 5.2e-06 10_[+5]_102 chr2R:19437252-19437372 5.2e-06 16_[+5]_96 chr2L:13813718-13813838 5.2e-06 77_[+5]_35 chr3R:24226912-24227032 2.1e-05 29_[+5]_83 chr2L:4971484-4971604 2.1e-05 6_[+5]_106 chr3L:17042662-17042782 2.1e-05 102_[+5]_10 chr3R:24650031-24650151 2.1e-05 8_[+5]_104 chr2R:17412645-17412765 2.1e-05 38_[+5]_74 chr2R:11825227-11825347 3e-05 87_[+5]_25 chr2L:13829746-13829866 3e-05 59_[+5]_53 chr2L:2236855-2236975 3.5e-05 93_[+5]_19 chr2R:14480979-14481099 4.7e-05 104_[+5]_8 chr3R:7092106-7092226 4.7e-05 69_[+5]_43 chr3R:29748862-29748982 4.7e-05 6_[+5]_106 chr3L:9729927-9730047 6e-05 18_[+5]_94 chr2L:10277462-10277582 6e-05 25_[+5]_87 chrX:11816498-11816618 6e-05 17_[+5]_95 chrX:17627792-17627912 6e-05 90_[+5]_22 chr3L:1302822-1302942 6.8e-05 84_[+5]_28 chr2R:14981160-14981280 7.6e-05 2_[+5]_110 chr3L:19910194-19910314 0.0001 48_[+5]_64 chr2L:11809311-11809431 0.0001 95_[+5]_17 chr2R:21160517-21160637 0.0001 39_[+5]_73 chr3R:9725553-9725673 0.0001 62_[+5]_50 chr2R:16850332-16850452 0.00012 24_[+5]_88 chrX:14234187-14234307 0.00013 61_[+5]_51 chr2R:11452512-11452632 0.00013 7_[+5]_105 chr3R:9510275-9510395 0.00015 28_[+5]_84 chr3R:16050741-16050861 0.00015 54_[+5]_58 chr3L:15988146-15988266 0.00017 72_[+5]_40 chr2R:22641320-22641440 0.00018 108_[+5]_4 chr2R:10739849-10739969 0.0002 63_[+5]_49 chr2L:10226795-10226915 0.0002 91_[+5]_21 chr3L:9864315-9864435 0.0002 13_[+5]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGDGYTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGDGYTG width=8 seqs=36 chr2L:10970288-10970408 ( 109) CAGGGCTG 1 chr3R:18199687-18199807 ( 105) CAGGGCTG 1 chr3R:13011335-13011455 ( 11) CAGGGCTG 1 chr2R:19437252-19437372 ( 17) CAGGGCTG 1 chr2L:13813718-13813838 ( 78) CAGGGCTG 1 chr3R:24226912-24227032 ( 30) CAGGGTTG 1 chr2L:4971484-4971604 ( 7) CAGGGTTG 1 chr3L:17042662-17042782 ( 103) CAGAGCTG 1 chr3R:24650031-24650151 ( 9) CAGGGTTG 1 chr2R:17412645-17412765 ( 39) CAGAGCTG 1 chr2R:11825227-11825347 ( 88) CAGTGCTG 1 chr2L:13829746-13829866 ( 60) CAGTGCTG 1 chr2L:2236855-2236975 ( 94) CAGCGCTG 1 chr2R:14480979-14481099 ( 105) CAGAGTTG 1 chr3R:7092106-7092226 ( 70) CAGAGTTG 1 chr3R:29748862-29748982 ( 7) CAGAGTTG 1 chr3L:9729927-9730047 ( 19) CAGTGTTG 1 chr2L:10277462-10277582 ( 26) CAGTGTTG 1 chrX:11816498-11816618 ( 18) CAGTGTTG 1 chrX:17627792-17627912 ( 91) CAGTGTTG 1 chr3L:1302822-1302942 ( 85) TAGGGCTG 1 chr2R:14981160-14981280 ( 3) CAGCGTTG 1 chr3L:19910194-19910314 ( 49) TAGGGTTG 1 chr2L:11809311-11809431 ( 96) TAGAGCTG 1 chr2R:21160517-21160637 ( 40) TAGAGCTG 1 chr3R:9725553-9725673 ( 63) TAGAGCTG 1 chr2R:16850332-16850452 ( 25) CAGGGATG 1 chrX:14234187-14234307 ( 62) TAGCGCTG 1 chr2R:11452512-11452632 ( 8) TAGCGCTG 1 chr3R:9510275-9510395 ( 29) TAGAGTTG 1 chr3R:16050741-16050861 ( 55) TAGAGTTG 1 chr3L:15988146-15988266 ( 73) TAGTGTTG 1 chr2R:22641320-22641440 ( 109) CAGAGATG 1 chr2R:10739849-10739969 ( 64) TAGCGTTG 1 chr2L:10226795-10226915 ( 92) CAGTGATG 1 chr3L:9864315-9864435 ( 14) CAGTGATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGDGYTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0197 E= 6.0e-001 -1181 182 -1181 3 170 -1181 -1181 -1181 -1181 -1181 235 -1181 -1 -50 64 -26 -1181 -1181 235 -1181 -147 118 -1181 57 -1181 -1181 -1181 174 -1181 -1181 235 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGDGYTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 6.0e-001 0.000000 0.694444 0.000000 0.305556 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.305556 0.138889 0.305556 0.250000 0.000000 0.000000 1.000000 0.000000 0.111111 0.444444 0.000000 0.444444 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGDGYTG MEME-5 regular expression -------------------------------------------------------------------------------- [CT]AG[AGT]G[CT]TG -------------------------------------------------------------------------------- Time 32.30 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:13813718-13813838 3.96e-03 77_[+5(5.24e-06)]_35 chrX:8591890-8592010 4.07e-01 120 chr2R:11452512-11452632 2.51e-02 27_[+1(6.14e-05)]_85 chr4:787461-787581 7.52e-01 120 chr3L:12734725-12734845 6.99e-01 120 chr2R:20618445-20618565 7.02e-01 120 chrX:8588773-8588893 2.70e-01 120 chr2R:9291663-9291783 5.36e-01 120 chr3R:9006304-9006424 4.89e-01 120 chr2R:8131323-8131443 6.52e-03 44_[+4(5.23e-05)]_5_[+1(3.03e-05)]_\ 55 chr2R:19456022-19456142 6.79e-01 120 chr2L:19526558-19526678 5.99e-02 106_[+2(1.36e-05)]_6 chr2R:1264304-1264424 2.89e-01 120 chr3R:30039641-30039761 1.04e-01 120 chr2R:17412645-17412765 7.97e-05 38_[+5(2.15e-05)]_43_[+2(9.01e-05)]_\ 4_[+1(3.03e-05)]_11 chrX:17627792-17627912 7.64e-04 75_[+3(1.31e-05)]_7_[+5(5.96e-05)]_\ 22 chr3L:13502614-13502734 4.59e-01 120 chr3L:8449866-8449986 1.32e-01 120 chr2R:19437252-19437372 4.03e-02 16_[+5(5.24e-06)]_96 chrX:635772-635892 4.64e-03 8_[+4(3.19e-05)]_67_[+1(8.07e-05)]_\ 29 chr2L:12546641-12546761 2.54e-03 32_[+2(1.36e-05)]_80 chr2R:21168665-21168785 1.56e-02 41_[+3(8.02e-06)]_71 chrX:2633886-2634006 8.27e-02 93_[+2(2.23e-05)]_19 chr3R:13011335-13011455 1.67e-03 10_[+5(5.24e-06)]_41_[+4(8.34e-05)]_\ 53 chrX:16005704-16005824 6.16e-03 93_[+4(8.34e-05)]_19 chr3R:4811900-4812020 6.39e-02 120 chr2R:22608259-22608379 1.54e-01 30_[+2(3.94e-05)]_82 chr3R:9725553-9725673 7.09e-05 46_[+3(2.14e-05)]_42_[+1(8.07e-05)]_\ 16 chr2R:7407808-7407928 6.76e-05 10_[+4(3.19e-05)]_34_[+3(2.14e-05)]_\ 60 chr3R:13660312-13660432 2.13e-01 120 chr3R:18226066-18226186 2.91e-02 [+1(3.03e-05)]_67_[+1(3.03e-05)]_37 chr4:132090-132210 4.98e-01 120 chr2R:16221713-16221833 1.34e-02 120 chr4:313743-313863 1.56e-01 120 chr3R:23820476-23820596 4.70e-02 111_[+2(1.36e-05)]_1 chr3R:18199687-18199807 2.70e-03 104_[+5(5.24e-06)]_8 chr2R:24535398-24535518 8.07e-02 71_[+1(6.14e-05)]_41 chr2R:18180120-18180240 3.11e-01 120 chr3R:11235112-11235232 9.41e-01 120 chr2R:23862575-23862695 1.79e-04 16_[+3(1.31e-05)]_16_[+4(3.19e-05)]_\ 72 chr3L:7339440-7339560 9.36e-02 120 chr2L:10970288-10970408 1.45e-02 108_[+5(5.24e-06)]_4 chr3L:21539804-21539924 7.54e-03 7_[+3(4.43e-05)]_105 chrX:15887307-15887427 1.45e-01 120 chr2R:5363103-5363223 5.62e-01 120 chr3R:7080349-7080469 4.09e-01 120 chr2L:19542319-19542439 2.04e-02 32_[+1(3.03e-05)]_80 chr2R:7955903-7956023 1.72e-01 120 chr3L:199254-199374 3.30e-01 120 chr2R:23865343-23865463 6.92e-04 47_[+1(3.03e-05)]_30_[+2(7.31e-05)]_\ 27 chr3R:7186921-7187041 1.69e-01 120 chr3R:11679669-11679789 1.60e-02 120 chrX:11816498-11816618 2.88e-03 17_[+5(5.96e-05)]_95 chr2R:16850332-16850452 6.99e-03 32_[+1(3.03e-05)]_80 chr3R:22462071-22462191 1.33e-01 9_[+4(3.19e-05)]_103 chr2L:13829746-13829866 1.76e-04 20_[+1(3.03e-05)]_31_[+5(2.95e-05)]_\ 15_[+4(8.34e-05)]_30 chr3R:17687037-17687157 2.54e-01 120 chrX:14234187-14234307 7.85e-05 85_[+2(1.36e-05)]_27 chr2R:18167166-18167286 6.36e-01 120 chr2R:15322288-15322408 9.27e-01 120 chr3L:19598784-19598904 2.53e-02 4_[+3(8.02e-06)]_108 chr2L:11130626-11130746 3.28e-04 37_[+2(6.51e-05)]_41_[+3(8.02e-06)]_\ 26 chr2R:5250941-5251061 8.37e-02 85_[+3(5.69e-05)]_27 chr3R:12691530-12691650 9.78e-01 120 chr3L:6173935-6174055 6.05e-02 120 chr3L:16602911-16603031 3.18e-01 120 chr2L:6723098-6723218 4.25e-02 73_[+2(6.51e-05)]_39 chr3R:29748862-29748982 1.84e-02 6_[+5(4.73e-05)]_106 chr3R:5393851-5393971 2.20e-03 [+4(3.19e-05)]_91_[+2(1.36e-05)]_13 chrX:14832490-14832610 7.15e-02 120 chr3L:3818651-3818771 1.04e-01 120 chr2R:24033934-24034054 1.46e-01 120 chr2R:9891760-9891880 9.75e-01 120 chr3L:14559836-14559956 8.03e-01 120 chr2R:5753347-5753467 8.53e-01 120 chr2L:10277462-10277582 7.27e-02 25_[+5(5.96e-05)]_87 chr3R:24650031-24650151 2.29e-03 8_[+5(2.15e-05)]_94_[+2(7.31e-05)]_\ 2 chr3L:9968373-9968493 2.39e-01 120 chr2R:20996157-20996277 1.77e-04 [+1(6.14e-05)]_65_[+4(5.23e-05)]_39 chr2R:17683468-17683588 8.31e-03 48_[+4(8.34e-05)]_64 chr3L:18901558-18901678 4.18e-04 1_[+2(6.51e-05)]_53_[+1(3.03e-05)]_\ 50 chr2L:21221238-21221358 4.48e-03 71_[+2(5.38e-06)]_41 chr2L:2236855-2236975 1.19e-02 69_[+1(6.14e-05)]_16_[+5(3.47e-05)]_\ 19 chr3R:8340980-8341100 3.44e-02 46_[+1(8.07e-05)]_3_[+1(3.03e-05)]_\ 55 chr3L:20186458-20186578 5.91e-01 120 chrX:6291224-6291344 2.81e-04 53_[+4(8.34e-05)]_38_[+2(5.38e-06)]_\ 13 chr3L:3219023-3219143 8.25e-01 120 chr3R:12431182-12431302 5.00e-02 96_[+3(3.91e-05)]_16 chr3R:24320439-24320559 8.12e-01 120 chr3L:9134479-9134599 1.39e-03 20_[+4(3.19e-05)]_21_[+3(8.02e-06)]_\ 63 chr3L:9137187-9137307 3.15e-02 21_[+1(3.03e-05)]_91 chr3L:9864315-9864435 1.89e-01 120 chr2L:10362839-10362959 9.52e-01 120 chr4:443763-443883 1.98e-01 112_[+3(3.91e-05)] chr2R:10813343-10813463 1.36e-01 120 chrX:1026601-1026721 2.58e-01 120 chrX:16096646-16096766 4.69e-01 120 chr2L:8308298-8308418 7.02e-01 120 chrX:12028992-12029112 2.11e-03 96_[+1(3.03e-05)]_16 chr3R:11628519-11628639 2.49e-02 120 chr3R:16050741-16050861 1.41e-02 70_[+2(1.36e-05)]_42 chr3L:15144224-15144344 8.49e-02 120 chrX:9156534-9156654 9.68e-01 120 chrX:11611802-11611922 1.67e-01 120 chr3L:7936105-7936225 1.28e-02 8_[+4(5.23e-05)]_45_[+2(5.76e-05)]_\ 51 chr2L:6914077-6914197 1.10e-03 19_[+3(7.54e-05)]_17_[+4(3.19e-05)]_\ 68 chr2R:12200809-12200929 4.05e-05 4_[+3(2.14e-05)]_46_[+4(3.19e-05)]_\ 54 chr3R:8716158-8716278 3.20e-03 28_[+3(8.02e-06)]_84 chr2L:452992-453112 3.61e-01 120 chr2R:5981894-5982014 1.28e-01 120 chr2L:10298478-10298598 7.78e-01 120 chr3L:16853664-16853784 8.43e-02 120 chrX:13287926-13288046 3.89e-02 47_[+1(3.03e-05)]_65 chr3R:24031891-24032011 2.39e-01 120 chr3R:12425887-12426007 1.78e-03 71_[+1(6.14e-05)]_19_[+1(6.14e-05)]_\ 14 chr3R:15804140-15804260 2.62e-03 29_[+3(7.54e-05)]_6_[+4(5.23e-05)]_\ 69 chr3L:15524083-15524203 1.51e-02 15_[+3(5.69e-05)]_97 chr2L:20066284-20066404 1.71e-02 83_[+2(1.36e-05)]_29 chr3R:31771926-31772046 5.90e-01 120 chr3R:9637570-9637690 6.18e-02 60_[+1(3.03e-05)]_52 chr2L:8943226-8943346 5.38e-02 120 chr2L:18951776-18951896 1.74e-02 57_[+1(3.03e-05)]_55 chrX:19480114-19480234 3.49e-01 120 chr2L:203648-203768 2.98e-03 78_[+2(6.51e-05)]_12_[+1(8.07e-05)]_\ 14 chr2R:25253229-25253349 1.79e-01 120 chr3L:8544885-8545005 7.43e-05 46_[+3(3.91e-05)]_34_[+1(3.03e-05)]_\ 14_[+2(1.36e-05)]_2 chr2R:20587379-20587499 7.24e-02 68_[+4(3.19e-05)]_44 chr2R:22924839-22924959 9.31e-01 120 chr3L:12850007-12850127 2.72e-02 120 chr2R:17592770-17592890 1.22e-01 120 chr2R:21160517-21160637 1.32e-02 73_[+1(8.07e-05)]_18_[+1(3.03e-05)]_\ 13 chr2L:21262905-21263025 1.35e-02 57_[+2(1.36e-05)]_55 chr4:205829-205949 9.35e-01 120 chr2R:13553983-13554103 7.97e-04 55_[+2(1.36e-05)]_5_[+2(3.41e-05)]_\ 7_[+1(6.14e-05)]_29 chr2R:12519070-12519190 5.49e-02 67_[+2(6.51e-05)]_23_[+2(6.51e-05)]_\ 14 chr2R:21168864-21168984 1.77e-02 90_[+2(3.41e-05)]_22 chr3R:4397909-4398029 1.88e-02 28_[+2(1.36e-05)]_84 chr2R:12037214-12037334 1.11e-01 120 chr2R:13968160-13968280 1.70e-01 120 chrX:13744657-13744777 1.17e-01 120 chr3R:12697757-12697877 5.38e-01 120 chr2R:12344747-12344867 9.96e-01 120 chr2R:22641320-22641440 1.00e-01 120 chr3L:1302822-1302942 9.65e-02 84_[+5(6.76e-05)]_28 chr2L:21344267-21344387 2.06e-02 120 chr2R:16271927-16272047 4.60e-04 37_[+3(8.02e-06)]_17_[+4(3.19e-05)]_\ 50 chr2L:11809311-11809431 1.19e-02 110_[+1(3.03e-05)]_2 chr2L:19791938-19792058 2.68e-01 9_[+4(3.19e-05)]_103 chr3R:6646822-6646942 1.09e-02 81_[+2(1.36e-05)]_31 chr2L:10250581-10250701 4.24e-01 120 chr3L:21175653-21175773 1.03e-01 71_[+1(6.14e-05)]_41 chr2L:10226795-10226915 1.34e-01 120 chrX:8075424-8075544 9.44e-02 63_[+1(3.03e-05)]_49 chr3R:14659405-14659525 3.66e-01 120 chr2L:6852162-6852282 9.70e-02 99_[+2(6.51e-05)]_13 chr2L:21142245-21142365 7.14e-02 110_[+3(4.43e-05)]_2 chr2L:10366603-10366723 2.02e-01 120 chr2L:10842455-10842575 7.70e-01 120 chr2L:10247010-10247130 2.12e-01 120 chr2R:22640187-22640307 1.82e-01 15_[+1(6.14e-05)]_97 chrX:11493112-11493232 4.86e-01 120 chr3L:13044437-13044557 3.96e-02 12_[+2(1.36e-05)]_100 chr2R:24881554-24881674 3.69e-02 12_[+2(1.36e-05)]_100 chr3R:11244151-11244271 2.99e-04 33_[+2(3.41e-05)]_10_[+4(5.23e-05)]_\ 61 chr3L:19586150-19586270 7.64e-02 79_[+3(8.02e-06)]_33 chr2R:12437069-12437189 3.46e-01 120 chr2L:3144788-3144908 7.77e-02 82_[+1(6.14e-05)]_30 chr3L:19910194-19910314 3.03e-03 80_[+2(1.36e-05)]_32 chr3L:8405222-8405342 1.04e-01 66_[+1(8.07e-05)]_46 chr3L:20520944-20521064 8.22e-03 61_[+2(1.36e-05)]_51 chr2R:15934692-15934812 6.33e-03 54_[+4(3.19e-05)]_58 chr3L:3303785-3303905 1.18e-02 120 chr4:1060885-1061005 2.00e-01 120 chr2L:2365188-2365308 7.67e-01 120 chr2R:8131522-8131642 2.73e-01 120 chr4:308071-308191 1.50e-02 36_[+2(1.36e-05)]_76 chrX:13822193-13822313 1.82e-01 120 chr3L:15988146-15988266 2.81e-03 19_[+4(3.19e-05)]_13_[+4(3.19e-05)]_\ 72 chr3R:29223390-29223510 8.14e-04 30_[+1(6.14e-05)]_29_[+2(1.36e-05)]_\ 45 chr4:210246-210366 1.56e-03 3_[+1(3.03e-05)]_10_[+3(1.31e-05)]_\ 91 chr2R:11825227-11825347 3.46e-05 78_[+1(6.14e-05)]_1_[+5(2.95e-05)]_\ 25 chrX:5665966-5666086 6.28e-03 35_[+1(6.14e-05)]_77 chr3R:9039651-9039771 5.87e-01 120 chr3L:9729927-9730047 1.32e-02 18_[+5(5.96e-05)]_28_[+2(6.51e-05)]_\ 58 chr3R:28844957-28845077 5.85e-01 120 chr3R:11581521-11581641 1.77e-01 34_[+1(3.03e-05)]_78 chr3R:32068480-32068600 4.21e-02 35_[+1(3.03e-05)]_77 chrX:18863896-18864016 8.61e-02 120 chr3L:4262511-4262631 2.26e-01 4_[+1(8.07e-05)]_108 chr3R:27151485-27151605 6.10e-01 120 chr3L:7510811-7510931 7.81e-01 120 chr3L:16574464-16574584 7.37e-01 120 chr2R:9842489-9842609 3.75e-03 77_[+2(1.36e-05)]_35 chr3L:5765593-5765713 6.10e-01 120 chr3L:12414797-12414917 5.43e-03 14_[+3(8.02e-06)]_98 chr3R:16359283-16359403 3.00e-03 76_[+2(9.01e-05)]_36 chrX:17077945-17078065 4.71e-02 109_[+2(7.31e-05)]_3 chr3L:18748577-18748697 4.71e-04 61_[+1(3.03e-05)]_23_[+3(5.69e-05)]_\ 20 chrX:8436889-8437009 1.78e-01 120 chrX:16286218-16286338 7.50e-03 7_[+1(3.03e-05)]_105 chr2R:23386407-23386527 3.11e-01 120 chr3R:7092106-7092226 1.53e-02 69_[+5(4.73e-05)]_43 chr3L:20226298-20226418 7.11e-03 60_[+3(2.14e-05)]_52 chr3R:6657433-6657553 3.27e-03 46_[+2(9.01e-05)]_66 chr3L:6495626-6495746 6.89e-02 120 chr3R:12408262-12408382 1.12e-03 30_[+2(1.36e-05)]_29_[+1(3.03e-05)]_\ 45 chr2L:20675989-20676109 3.51e-01 120 chr3R:31745886-31746006 3.48e-01 120 chr4:359973-360093 7.19e-01 120 chrX:7291255-7291375 4.27e-03 23_[+1(6.14e-05)]_3_[+1(8.07e-05)]_\ 18_[+3(8.70e-05)]_52 chr2R:7387251-7387371 2.74e-02 120 chr3R:31610967-31611087 8.90e-02 62_[+2(6.51e-05)]_23_[+2(7.31e-05)]_\ 19 chr3L:17042662-17042782 6.11e-03 102_[+5(2.15e-05)]_10 chr2L:4971484-4971604 2.53e-03 6_[+5(2.15e-05)]_23_[+2(1.36e-05)]_\ 75 chr2R:9207446-9207566 2.88e-01 120 chr3R:20948637-20948757 4.67e-02 101_[+1(3.03e-05)]_11 chr3R:20593015-20593135 2.09e-04 30_[+3(8.02e-06)]_56_[+2(6.51e-05)]_\ 18 chr2L:10767947-10768067 9.16e-03 58_[+1(8.07e-05)]_54 chr2L:156057-156177 6.14e-03 108_[+2(1.36e-05)]_4 chrX:16547566-16547686 2.36e-02 9_[+2(6.51e-05)]_103 chr2R:5702037-5702157 2.11e-03 28_[+4(3.19e-05)]_63_[+2(3.41e-05)]_\ 13 chr3R:22487157-22487277 7.96e-02 11_[+1(6.14e-05)]_101 chrX:6590760-6590880 4.54e-02 74_[+1(3.03e-05)]_38 chr3R:15225391-15225511 2.42e-03 22_[+3(3.91e-05)]_42_[+1(8.07e-05)]_\ 40 chr4:697618-697738 1.08e-03 73_[+1(6.14e-05)]_5_[+4(3.19e-05)]_\ 26 chrX:11154040-11154160 4.90e-01 120 chr2L:20757998-20758118 4.88e-01 120 chrX:13128824-13128944 2.54e-03 17_[+3(3.91e-05)]_38_[+3(8.02e-06)]_\ 49 chr2R:8067814-8067934 4.75e-01 120 chr2L:16743155-16743275 5.73e-03 20_[+2(6.51e-05)]_14_[+1(6.14e-05)]_\ 70 chrX:16441432-16441552 4.38e-02 72_[+1(3.03e-05)]_16_[+1(3.03e-05)]_\ 16 chr3R:9510275-9510395 4.24e-02 120 chr3L:3515764-3515884 2.77e-03 13_[+3(8.02e-06)]_99 chr2R:24086516-24086636 1.82e-01 48_[+1(3.03e-05)]_10_[+1(3.03e-05)]_\ 46 chr2R:10739849-10739969 1.62e-01 120 chr2R:9577967-9578087 1.02e-01 120 chr3L:5152516-5152636 1.93e-01 120 chr2L:11516978-11517098 4.60e-02 73_[+3(8.02e-06)]_3_[+3(2.14e-05)]_\ 28 chr2L:6467688-6467808 9.81e-02 120 chr2L:19054164-19054284 2.81e-02 120 chr2R:14480979-14481099 1.03e-02 104_[+5(4.73e-05)]_8 chr2L:21344471-21344591 1.11e-01 97_[+1(8.07e-05)]_15 chr3R:19648430-19648550 2.86e-01 120 chr2L:207280-207400 1.73e-04 78_[+3(7.54e-05)]_34 chr2L:1980784-1980904 3.55e-03 8_[+2(1.36e-05)]_104 chr3R:24226912-24227032 5.98e-03 29_[+5(2.15e-05)]_83 chr3R:12630431-12630551 1.27e-02 120 chr3L:12526684-12526804 2.42e-03 21_[+3(8.02e-06)]_91 chr2L:17473169-17473289 1.33e-02 30_[+3(6.21e-05)]_82 chr2R:14981160-14981280 4.67e-05 2_[+5(7.57e-05)]_7_[+4(8.34e-05)]_9_\ [+4(3.19e-05)]_41_[+2(5.76e-05)]_8_[+2(1.36e-05)]_13 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************