******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12391.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:11813864-11813984 1.0000 120 chr3R:21134038-21134158 1.0000 120 chr2L:6595161-6595281 1.0000 120 chr3L:2651902-2652022 1.0000 120 chr3R:24320303-24320423 1.0000 120 chr2R:11144933-11145053 1.0000 120 chr2L:10331306-10331426 1.0000 120 chr3L:4242549-4242669 1.0000 120 chr2R:13474973-13475093 1.0000 120 chrX:13296927-13297047 1.0000 120 chr2R:16219477-16219597 1.0000 120 chr3L:3786927-3787047 1.0000 120 chrX:5966031-5966151 1.0000 120 chr3R:10354087-10354207 1.0000 120 chr3L:19586103-19586223 1.0000 120 chr3L:21047108-21047228 1.0000 120 chr2L:10543505-10543625 1.0000 120 chrX:17636118-17636238 1.0000 120 chr3L:11074547-11074667 1.0000 120 chr2R:17533786-17533906 1.0000 120 chrX:8445044-8445164 1.0000 120 chr3R:17671043-17671163 1.0000 120 chr2R:22677947-22678067 1.0000 120 chr2R:9114062-9114182 1.0000 120 chr3L:18297504-18297624 1.0000 120 chr2L:8071721-8071841 1.0000 120 chr2R:14161267-14161387 1.0000 120 chr2L:8080792-8080912 1.0000 120 chr3L:7510766-7510886 1.0000 120 chr3L:19073973-19074093 1.0000 120 chr3L:13068438-13068558 1.0000 120 chr3R:30734707-30734827 1.0000 120 chr2R:20257453-20257573 1.0000 120 chrX:6255572-6255692 1.0000 120 chr2L:11130473-11130593 1.0000 120 chr3L:18402712-18402832 1.0000 120 chr3R:6368598-6368718 1.0000 120 chr2R:16178627-16178747 1.0000 120 chrX:5329403-5329523 1.0000 120 chr3R:12630451-12630571 1.0000 120 chrX:7323783-7323903 1.0000 120 chr2L:6907870-6907990 1.0000 120 chr2L:17747256-17747376 1.0000 120 chr3L:3873232-3873352 1.0000 120 chr3R:22367314-22367434 1.0000 120 chr2L:11091240-11091360 1.0000 120 chrX:9202206-9202326 1.0000 120 chrX:7104556-7104676 1.0000 120 chr2R:23882413-23882533 1.0000 120 chr3L:18290514-18290634 1.0000 120 chr3L:19056988-19057108 1.0000 120 chr3L:7861961-7862081 1.0000 120 chr2L:15442309-15442429 1.0000 120 chr2R:12951518-12951638 1.0000 120 chr3L:11309836-11309956 1.0000 120 chr2R:17469247-17469367 1.0000 120 chr2R:18850683-18850803 1.0000 120 chr3R:23300718-23300838 1.0000 120 chr3L:1802931-1803051 1.0000 120 chr3R:22462158-22462278 1.0000 120 chr3R:21834401-21834521 1.0000 120 chr2L:18484751-18484871 1.0000 120 chr3L:1534176-1534296 1.0000 120 chr2L:15061484-15061604 1.0000 120 chr3R:9344912-9345032 1.0000 120 chr3L:18349406-18349526 1.0000 120 chr2R:9291631-9291751 1.0000 120 chr2R:16202923-16203043 1.0000 120 chr3R:12406337-12406457 1.0000 120 chr3R:10449113-10449233 1.0000 120 chrX:13109879-13109999 1.0000 120 chr2L:21573252-21573372 1.0000 120 chr3R:5354916-5355036 1.0000 120 chr3L:18225078-18225198 1.0000 120 chrX:7166456-7166576 1.0000 120 chr3L:10661081-10661201 1.0000 120 chr2R:9087671-9087791 1.0000 120 chr2L:14358913-14359033 1.0000 120 chr3R:5636891-5637011 1.0000 120 chr2L:7150916-7151036 1.0000 120 chr3L:16045438-16045558 1.0000 120 chr3R:25445624-25445744 1.0000 120 chr3L:9838670-9838790 1.0000 120 chr3R:23061365-23061485 1.0000 120 chr2R:23894867-23894987 1.0000 120 chr2L:11338359-11338479 1.0000 120 chr3L:8509835-8509955 1.0000 120 chr3R:12985838-12985958 1.0000 120 chr3L:15321084-15321204 1.0000 120 chr2L:17588719-17588839 1.0000 120 chrX:11716819-11716939 1.0000 120 chr3L:10893532-10893652 1.0000 120 chrX:3396973-3397093 1.0000 120 chr3R:21206418-21206538 1.0000 120 chr3L:8544848-8544968 1.0000 120 chr2R:17469450-17469570 1.0000 120 chr3R:11663648-11663768 1.0000 120 chr3L:19899002-19899122 1.0000 120 chr3L:6189153-6189273 1.0000 120 chr3L:6173977-6174097 1.0000 120 chr3R:15351094-15351214 1.0000 120 chr2L:21179781-21179901 1.0000 120 chr2R:14803405-14803525 1.0000 120 chr3L:12734757-12734877 1.0000 120 chr3R:8362593-8362713 1.0000 120 chr3L:9399255-9399375 1.0000 120 chr3R:8867814-8867934 1.0000 120 chr2L:10752349-10752469 1.0000 120 chr3L:6752865-6752985 1.0000 120 chr2L:16310777-16310897 1.0000 120 chr3R:19014927-19015047 1.0000 120 chr2L:14441060-14441180 1.0000 120 chr2R:11397591-11397711 1.0000 120 chr3R:23820398-23820518 1.0000 120 chr3R:10641411-10641531 1.0000 120 chr3R:8673926-8674046 1.0000 120 chr2R:11640972-11641092 1.0000 120 chr2R:19860378-19860498 1.0000 120 chr3R:4775442-4775562 1.0000 120 chr3R:18242197-18242317 1.0000 120 chr3R:13799682-13799802 1.0000 120 chr2R:14971221-14971341 1.0000 120 chr3L:6885790-6885910 1.0000 120 chr2L:1428486-1428606 1.0000 120 chr3R:31704697-31704817 1.0000 120 chr3R:31771984-31772104 1.0000 120 chr3R:29748902-29749022 1.0000 120 chr3R:11628591-11628711 1.0000 120 chrX:14234159-14234279 1.0000 120 chr2L:5238343-5238463 1.0000 120 chr3L:16131684-16131804 1.0000 120 chr3R:30812631-30812751 1.0000 120 chr3R:18311367-18311487 1.0000 120 chr3R:25074694-25074814 1.0000 120 chr3L:18748427-18748547 1.0000 120 chrX:13757007-13757127 1.0000 120 chr3R:8849518-8849638 1.0000 120 chr3R:24817217-24817337 1.0000 120 chr3R:11852084-11852204 1.0000 120 chr3R:11368889-11369009 1.0000 120 chrX:12225424-12225544 1.0000 120 chr2L:11189244-11189364 1.0000 120 chr3R:15837170-15837290 1.0000 120 chr2R:12727656-12727776 1.0000 120 chr2L:16302950-16303070 1.0000 120 chr2L:19490223-19490343 1.0000 120 chr3L:21034313-21034433 1.0000 120 chr3R:8955035-8955155 1.0000 120 chr3L:3855336-3855456 1.0000 120 chrX:17737962-17738082 1.0000 120 chr3L:9371037-9371157 1.0000 120 chr2L:18305175-18305295 1.0000 120 chr3L:6981968-6982088 1.0000 120 chr2R:23697932-23698052 1.0000 120 chr3R:15250632-15250752 1.0000 120 chr2L:827600-827720 1.0000 120 chr2R:21364842-21364962 1.0000 120 chr3R:16837946-16838066 1.0000 120 chr2L:5520054-5520174 1.0000 120 chr2R:15381221-15381341 1.0000 120 chr2L:8415472-8415592 1.0000 120 chr3R:16771738-16771858 1.0000 120 chr2L:7270403-7270523 1.0000 120 chrX:8436924-8437044 1.0000 120 chr2L:7395938-7396058 1.0000 120 chr3L:16386035-16386155 1.0000 120 chr2R:15322315-15322435 1.0000 120 chr3R:12997856-12997976 1.0000 120 chrX:19865779-19865899 1.0000 120 chr2L:21149259-21149379 1.0000 120 chr3R:26014398-26014518 1.0000 120 chr3L:5152468-5152588 1.0000 120 chr2L:14245640-14245760 1.0000 120 chr2L:2905160-2905280 1.0000 120 chr2L:10858261-10858381 1.0000 120 chr2L:10428655-10428775 1.0000 120 chr3L:12336453-12336573 1.0000 120 chr3L:18250851-18250971 1.0000 120 chr3L:10847886-10848006 1.0000 120 chr3L:16779815-16779935 1.0000 120 chr3L:8604387-8604507 1.0000 120 chr3L:10767295-10767415 1.0000 120 chr3L:361335-361455 1.0000 120 chr3L:3437313-3437433 1.0000 120 chr2R:13924345-13924465 1.0000 120 chr3L:8951165-8951285 1.0000 120 chr3L:11993163-11993283 1.0000 120 chrX:16276047-16276167 1.0000 120 chr3L:13929207-13929327 1.0000 120 chr3L:9028191-9028311 1.0000 120 chr2R:9286639-9286759 1.0000 120 chr3L:18822469-18822589 1.0000 120 chr2L:4971508-4971628 1.0000 120 chr3L:2371995-2372115 1.0000 120 chr2R:21183098-21183218 1.0000 120 chr3L:18204060-18204180 1.0000 120 chrX:13258808-13258928 1.0000 120 chr3L:21821795-21821915 1.0000 120 chr2L:11331782-11331902 1.0000 120 chr3L:9508835-9508955 1.0000 120 chr3R:23345267-23345387 1.0000 120 chr2R:21709655-21709775 1.0000 120 chr3R:26012935-26013055 1.0000 120 chr3L:11206072-11206192 1.0000 120 chr3R:8171641-8171761 1.0000 120 chrX:12595875-12595995 1.0000 120 chr2L:1462226-1462346 1.0000 120 chr3L:19636911-19637031 1.0000 120 chr3L:11334126-11334246 1.0000 120 chr3L:8525142-8525262 1.0000 120 chrX:12242494-12242614 1.0000 120 chr3R:14741437-14741557 1.0000 120 chrX:12925920-12926040 1.0000 120 chr3L:22727884-22728004 1.0000 120 chr3R:21633254-21633374 1.0000 120 chr3R:23293488-23293608 1.0000 120 chr2L:19377590-19377710 1.0000 120 chr2R:14362864-14362984 1.0000 120 chr3R:11967505-11967625 1.0000 120 chr2R:13198433-13198553 1.0000 120 chr2L:14519399-14519519 1.0000 120 chr3L:1350743-1350863 1.0000 120 chr3L:12501350-12501470 1.0000 120 chr3R:17680943-17681063 1.0000 120 chr3R:6818687-6818807 1.0000 120 chr2R:12468412-12468532 1.0000 120 chr3L:3983525-3983645 1.0000 120 chr2R:18676500-18676620 1.0000 120 chr2L:4459659-4459779 1.0000 120 chrX:17510667-17510787 1.0000 120 chr2L:8528568-8528688 1.0000 120 chrX:7617066-7617186 1.0000 120 chrX:13274596-13274716 1.0000 120 chr3R:17535284-17535404 1.0000 120 chr2L:8602767-8602887 1.0000 120 chr3R:20588527-20588647 1.0000 120 chrX:11108288-11108408 1.0000 120 chr2L:8381812-8381932 1.0000 120 chr2R:23970148-23970268 1.0000 120 chr3L:15592674-15592794 1.0000 120 chr2L:14701623-14701743 1.0000 120 chr3R:14729364-14729484 1.0000 120 chr3R:25880505-25880625 1.0000 120 chr3L:15311574-15311694 1.0000 120 chr2L:12351057-12351177 1.0000 120 chr3R:19031327-19031447 1.0000 120 chr3L:13905640-13905760 1.0000 120 chr3R:6468134-6468254 1.0000 120 chr3R:5470726-5470846 1.0000 120 chr3L:11350845-11350965 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG12391/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12391.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.379 C 0.12 G 0.122 T 0.38 Background letter frequencies (from file dataset with add-one prior applied): A 0.379 C 0.12 G 0.122 T 0.38 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCCHGYGC MEME-1 width = 8 sites = 19 llr = 186 E-value = 7.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCHGYGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::24:::: pos.-specific C 7673:5:7 probability G :222a1a3 matrix T 32:2:4:: bits 3.1 * * 2.8 * * 2.4 * * 2.1 * ** Relative 1.8 * * ** Entropy 1.5 * * * ** (14.1 bits) 1.2 *** * ** 0.9 *** **** 0.6 *** **** 0.3 ******** 0.0 -------- Multilevel CCCAGCGC consensus TG C T G sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCHGYGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:23293488-23293608 7 2.30e-07 TTATCA CCCAGCGC AATCTGATGC chrX:17737962-17738082 94 1.79e-06 TGTTCTTTTT CGCCGCGG TAGCTATCAT chr2L:827600-827720 109 1.94e-06 TTGACAATTT CTCCGCGC TAAC chr3R:23061365-23061485 110 3.03e-06 CAATCGATAA CGCCGGGC GTT chr3L:8604387-8604507 1 4.90e-06 . CCCTGGGC CAAAAATTAA chr3L:1350743-1350863 67 7.07e-06 AATAATGTGA CCAGGCGC TGTAGAGCAA chrX:7617066-7617186 62 7.79e-06 catttttTTG CTCCGCGG TCTTGCAGGT chr2L:10752349-10752469 47 7.79e-06 CTGTAAAAAA CCGGGTGC GGTTAAGTCA chr2L:19377590-19377710 109 1.09e-05 CAGTATTTTT CCGAGTGC ATGG chr3L:6189153-6189273 2 1.09e-05 T CCGAGTGC GTAGTTGTTT chr2L:1428486-1428606 113 1.37e-05 TAGTGATATC CCCTGTGG chr2R:21709655-21709775 2 1.44e-05 T TCCGGCGG CACAGTGAAC chr3R:6818687-6818807 13 1.56e-05 CGCTTGATTA CCACGTGC GCCTTATATA chr3R:31704697-31704817 110 2.37e-05 ATTCCTTTCT TCCAGTGC AAT chrX:19865779-19865899 113 2.87e-05 GAATCGATTC CCAAGCGG chr2L:4971508-4971628 3 3.07e-05 GT TGCTGCGC AACGGTCACA chr2R:19860378-19860498 52 3.65e-05 GTGCAAACTC CTCTGTGC AAAAAGGCGT chr2R:23697932-23698052 65 4.96e-05 TATTATTTAA TTCAGCGC GGAATAGGTT chrX:13757007-13757127 23 5.49e-05 TTCGATTGTT TGCAGTGC TTGTGTAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCHGYGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23293488-23293608 2.3e-07 6_[+1]_106 chrX:17737962-17738082 1.8e-06 93_[+1]_19 chr2L:827600-827720 1.9e-06 108_[+1]_4 chr3R:23061365-23061485 3e-06 109_[+1]_3 chr3L:8604387-8604507 4.9e-06 [+1]_112 chr3L:1350743-1350863 7.1e-06 66_[+1]_46 chrX:7617066-7617186 7.8e-06 61_[+1]_51 chr2L:10752349-10752469 7.8e-06 46_[+1]_66 chr2L:19377590-19377710 1.1e-05 108_[+1]_4 chr3L:6189153-6189273 1.1e-05 1_[+1]_111 chr2L:1428486-1428606 1.4e-05 112_[+1] chr2R:21709655-21709775 1.4e-05 1_[+1]_111 chr3R:6818687-6818807 1.6e-05 12_[+1]_100 chr3R:31704697-31704817 2.4e-05 109_[+1]_3 chrX:19865779-19865899 2.9e-05 112_[+1] chr2L:4971508-4971628 3.1e-05 2_[+1]_110 chr2R:19860378-19860498 3.6e-05 51_[+1]_61 chr2R:23697932-23698052 5e-05 64_[+1]_48 chrX:13757007-13757127 5.5e-05 22_[+1]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCHGYGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCHGYGC width=8 seqs=19 chr3R:23293488-23293608 ( 7) CCCAGCGC 1 chrX:17737962-17738082 ( 94) CGCCGCGG 1 chr2L:827600-827720 ( 109) CTCCGCGC 1 chr3R:23061365-23061485 ( 110) CGCCGGGC 1 chr3L:8604387-8604507 ( 1) CCCTGGGC 1 chr3L:1350743-1350863 ( 67) CCAGGCGC 1 chrX:7617066-7617186 ( 62) CTCCGCGG 1 chr2L:10752349-10752469 ( 47) CCGGGTGC 1 chr2L:19377590-19377710 ( 109) CCGAGTGC 1 chr3L:6189153-6189273 ( 2) CCGAGTGC 1 chr2L:1428486-1428606 ( 113) CCCTGTGG 1 chr2R:21709655-21709775 ( 2) TCCGGCGG 1 chr3R:6818687-6818807 ( 13) CCACGTGC 1 chr3R:31704697-31704817 ( 110) TCCAGTGC 1 chrX:19865779-19865899 ( 113) CCAAGCGG 1 chr2L:4971508-4971628 ( 3) TGCTGCGC 1 chr2R:19860378-19860498 ( 52) CTCTGTGC 1 chr2R:23697932-23698052 ( 65) TTCAGCGC 1 chrX:13757007-13757127 ( 23) TGCAGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCHGYGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9783 E= 7.9e+000 -1089 262 -1089 -53 -1089 227 79 -85 -126 251 38 -1089 -4 113 38 -85 -1089 -1089 304 -1089 -1089 198 -21 15 -1089 -1089 304 -1089 -1089 262 111 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCHGYGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 7.9e+000 0.000000 0.736842 0.000000 0.263158 0.000000 0.578947 0.210526 0.210526 0.157895 0.684211 0.157895 0.000000 0.368421 0.263158 0.157895 0.210526 0.000000 0.000000 1.000000 0.000000 0.000000 0.473684 0.105263 0.421053 0.000000 0.000000 1.000000 0.000000 0.000000 0.736842 0.263158 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCHGYGC MEME-1 regular expression -------------------------------------------------------------------------------- [CT][CGT]C[ACT]G[CT]G[CG] -------------------------------------------------------------------------------- Time 7.50 secs. ******************************************************************************** ******************************************************************************** MOTIF CMGCYTGC MEME-2 width = 8 sites = 7 llr = 83 E-value = 3.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CMGCYTGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :33::::: pos.-specific C 96:a4::a probability G 117:::a: matrix T ::::6a:: bits 3.1 * ** 2.8 * ** 2.4 * * ** 2.1 * * ** Relative 1.8 * ** ** Entropy 1.5 * ** *** (17.0 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCGCTTGC consensus AA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGCYTGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13258808-13258928 34 5.86e-07 AAAAAATCAA CCGCTTGC TTTATAAATT chr3R:14729364-14729484 9 7.29e-07 AAAAACAT CGGCCTGC ATTTTCATCC chr3R:25074694-25074814 43 1.32e-06 AACATGTTTA CAGCCTGC AAGTAAATAT chr3L:11074547-11074667 39 1.75e-06 AACTTCAAAC CCACCTGC TATCAAAAGT chr2R:16178627-16178747 2 2.66e-06 T GCGCTTGC ATGGAAGTAG chr2R:22677947-22678067 30 4.07e-06 TTTTAAATTC CAGCTTGC AAATTATGTT chr2L:8381812-8381932 25 5.45e-06 AAAATTAAGT CCACTTGC TTAATTTACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGCYTGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13258808-13258928 5.9e-07 33_[+2]_79 chr3R:14729364-14729484 7.3e-07 8_[+2]_104 chr3R:25074694-25074814 1.3e-06 42_[+2]_70 chr3L:11074547-11074667 1.8e-06 38_[+2]_74 chr2R:16178627-16178747 2.7e-06 1_[+2]_111 chr2R:22677947-22678067 4.1e-06 29_[+2]_83 chr2L:8381812-8381932 5.5e-06 24_[+2]_88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGCYTGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CMGCYTGC width=8 seqs=7 chrX:13258808-13258928 ( 34) CCGCTTGC 1 chr3R:14729364-14729484 ( 9) CGGCCTGC 1 chr3R:25074694-25074814 ( 43) CAGCCTGC 1 chr3L:11074547-11074667 ( 39) CCACCTGC 1 chr2R:16178627-16178747 ( 2) GCGCTTGC 1 chr2R:22677947-22678067 ( 30) CAGCTTGC 1 chr2L:8381812-8381932 ( 25) CCACTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGCYTGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 3.5e+002 -945 283 23 -945 -41 225 23 -945 -41 -945 255 -945 -945 306 -945 -945 -945 183 -945 59 -945 -945 -945 140 -945 -945 304 -945 -945 306 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGCYTGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.5e+002 0.000000 0.857143 0.142857 0.000000 0.285714 0.571429 0.142857 0.000000 0.285714 0.000000 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.428571 0.000000 0.571429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMGCYTGC MEME-2 regular expression -------------------------------------------------------------------------------- C[CA][GA]C[TC]TGC -------------------------------------------------------------------------------- Time 14.49 secs. ******************************************************************************** ******************************************************************************** MOTIF GSCARCTC MEME-3 width = 8 sites = 8 llr = 91 E-value = 1.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSCARCTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::84:3: pos.-specific C :493:a:a probability G a6::6:1: matrix T ::1:::6: bits 3.1 * * * 2.8 * * * 2.4 * * * * 2.1 *** * * Relative 1.8 *** * * Entropy 1.5 *** ** * (16.3 bits) 1.2 *** ** * 0.9 ****** * 0.6 ****** * 0.3 ******** 0.0 -------- Multilevel GGCAGCTC consensus C CA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCARCTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:12336453-12336573 12 5.95e-07 ATTAACAGAT GGCAGCTC AGCTACTGCT chr3R:25880505-25880625 111 1.18e-06 ATGTTTTTAA GCCCGCTC AT chr2R:16202923-16203043 86 2.15e-06 GCTAAAAGTT GGCAGCAC GGCCAGGGGA chr3L:3983525-3983645 58 2.74e-06 AGGCATGAAG GCCAGCAC TAAGTTATGT chr2R:16178627-16178747 32 4.58e-06 CTTAAGTTAT GGCAACTC GTTCTTTACT chr3L:18822469-18822589 110 6.40e-06 GATATCTTCG GCCCACTC GAC chrX:7323783-7323903 15 7.00e-06 ATTCGAAGAT GGCAACGC TGAAATATCG chr3L:18290514-18290634 111 1.31e-05 TTTTTTAAAG GGTAGCTC AC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCARCTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:12336453-12336573 5.9e-07 11_[+3]_101 chr3R:25880505-25880625 1.2e-06 110_[+3]_2 chr2R:16202923-16203043 2.2e-06 85_[+3]_27 chr3L:3983525-3983645 2.7e-06 57_[+3]_55 chr2R:16178627-16178747 4.6e-06 31_[+3]_81 chr3L:18822469-18822589 6.4e-06 109_[+3]_3 chrX:7323783-7323903 7e-06 14_[+3]_98 chr3L:18290514-18290634 1.3e-05 110_[+3]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCARCTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSCARCTC width=8 seqs=8 chr3L:12336453-12336573 ( 12) GGCAGCTC 1 chr3R:25880505-25880625 ( 111) GCCCGCTC 1 chr2R:16202923-16203043 ( 86) GGCAGCAC 1 chr3L:3983525-3983645 ( 58) GCCAGCAC 1 chr2R:16178627-16178747 ( 32) GGCAACTC 1 chr3L:18822469-18822589 ( 110) GCCCACTC 1 chrX:7323783-7323903 ( 15) GGCAACGC 1 chr3L:18290514-18290634 ( 111) GGTAGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCARCTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 1.9e+003 -965 -965 304 -965 -965 164 236 -965 -965 286 -965 -160 99 106 -965 -965 -1 -965 236 -965 -965 306 -965 -965 -60 -965 4 72 -965 306 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCARCTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.9e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.625000 0.000000 0.000000 0.875000 0.000000 0.125000 0.750000 0.250000 0.000000 0.000000 0.375000 0.000000 0.625000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.125000 0.625000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCARCTC MEME-3 regular expression -------------------------------------------------------------------------------- G[GC]C[AC][GA]C[TA]C -------------------------------------------------------------------------------- Time 20.73 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGTCCCC MEME-4 width = 8 sites = 2 llr = 29 E-value = 4.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGTCCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C ::::aaaa probability G a:a::::: matrix T :::a:::: bits 3.1 * * **** 2.8 * * **** 2.4 * * **** 2.1 * * **** Relative 1.8 * * **** Entropy 1.5 ******** (21.1 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GAGTCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGTCCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11108288-11108408 97 4.44e-07 ACTTGAATGC GAGTCCCC CATATGGCTG chr3R:4775442-4775562 98 4.44e-07 TGTTGCATTT GAGTCCCC GGAAATATAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGTCCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11108288-11108408 4.4e-07 96_[+4]_16 chr3R:4775442-4775562 4.4e-07 97_[+4]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGTCCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGTCCCC width=8 seqs=2 chrX:11108288-11108408 ( 97) GAGTCCCC 1 chr3R:4775442-4775562 ( 98) GAGTCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGTCCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 4.9e+003 -765 -765 303 -765 140 -765 -765 -765 -765 -765 303 -765 -765 -765 -765 139 -765 305 -765 -765 -765 305 -765 -765 -765 305 -765 -765 -765 305 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGTCCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.9e+003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGTCCCC MEME-4 regular expression -------------------------------------------------------------------------------- GAGTCCCC -------------------------------------------------------------------------------- Time 26.97 secs. ******************************************************************************** ******************************************************************************** MOTIF SCYKCCAG MEME-5 width = 8 sites = 3 llr = 39 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCYKCCAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::a: pos.-specific C 7a7:aa:: probability G 3::7:::a matrix T ::33:::: bits 3.1 * ** * 2.8 * ** * 2.4 * ** * 2.1 ** ** * Relative 1.8 ** ** * Entropy 1.5 ******** (18.9 bits) 1.2 ******** 0.9 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel CCCGCCAG consensus G TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCYKCCAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:15322315-15322435 94 1.40e-07 TCACGATATC CCCGCCAG TCACCGTTTT chr2L:8381812-8381932 60 1.16e-06 CACTCTAGAA CCCTCCAG ATATATGTAA chrX:7323783-7323903 44 2.06e-06 ACGCCACTTT GCTGCCAG ACTGTTTGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCYKCCAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15322315-15322435 1.4e-07 93_[+5]_19 chr2L:8381812-8381932 1.2e-06 59_[+5]_53 chrX:7323783-7323903 2.1e-06 43_[+5]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCYKCCAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCYKCCAG width=8 seqs=3 chr2R:15322315-15322435 ( 94) CCCGCCAG 1 chr2L:8381812-8381932 ( 60) CCCTCCAG 1 chrX:7323783-7323903 ( 44) GCTGCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCYKCCAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 1.2e+004 -823 247 145 -823 -823 305 -823 -823 -823 247 -823 -19 -823 -823 245 -19 -823 305 -823 -823 -823 305 -823 -823 140 -823 -823 -823 -823 -823 304 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCYKCCAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.2e+004 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 0.666667 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCYKCCAG MEME-5 regular expression -------------------------------------------------------------------------------- [CG]C[CT][GT]CCAG -------------------------------------------------------------------------------- Time 33.21 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:11813864-11813984 6.39e-01 120 chr3R:21134038-21134158 6.86e-01 120 chr2L:6595161-6595281 9.21e-01 120 chr3L:2651902-2652022 5.18e-01 120 chr3R:24320303-24320423 1.95e-01 120 chr2R:11144933-11145053 6.24e-01 120 chr2L:10331306-10331426 8.63e-01 120 chr3L:4242549-4242669 1.15e-01 120 chr2R:13474973-13475093 1.30e-01 120 chrX:13296927-13297047 1.95e-01 120 chr2R:16219477-16219597 4.78e-01 120 chr3L:3786927-3787047 4.49e-01 120 chrX:5966031-5966151 9.94e-01 120 chr3R:10354087-10354207 1.77e-01 120 chr3L:19586103-19586223 4.84e-01 120 chr3L:21047108-21047228 9.91e-01 120 chr2L:10543505-10543625 5.26e-01 120 chrX:17636118-17636238 1.56e-02 37_[+4(5.44e-05)]_75 chr3L:11074547-11074667 1.70e-04 38_[+2(1.75e-06)]_74 chr2R:17533786-17533906 4.75e-01 120 chrX:8445044-8445164 9.79e-01 120 chr3R:17671043-17671163 2.13e-01 120 chr2R:22677947-22678067 7.83e-03 29_[+2(4.07e-06)]_83 chr2R:9114062-9114182 2.53e-01 120 chr3L:18297504-18297624 5.12e-01 120 chr2L:8071721-8071841 7.24e-01 120 chr2R:14161267-14161387 8.71e-01 120 chr2L:8080792-8080912 6.63e-02 120 chr3L:7510766-7510886 6.15e-01 120 chr3L:19073973-19074093 7.19e-01 120 chr3L:13068438-13068558 5.39e-01 120 chr3R:30734707-30734827 1.74e-02 120 chr2R:20257453-20257573 9.26e-01 120 chrX:6255572-6255692 9.99e-01 120 chr2L:11130473-11130593 2.18e-01 120 chr3L:18402712-18402832 9.27e-01 120 chr3R:6368598-6368718 9.95e-01 120 chr2R:16178627-16178747 2.75e-05 1_[+2(2.66e-06)]_22_[+3(4.58e-06)]_\ 81 chrX:5329403-5329523 7.07e-01 120 chr3R:12630451-12630571 9.03e-01 120 chrX:7323783-7323903 2.04e-05 14_[+3(7.00e-06)]_21_[+5(2.06e-06)]_\ 69 chr2L:6907870-6907990 5.53e-02 120 chr2L:17747256-17747376 5.76e-01 120 chr3L:3873232-3873352 9.98e-01 120 chr3R:22367314-22367434 2.83e-01 120 chr2L:11091240-11091360 1.37e-01 120 chrX:9202206-9202326 7.51e-01 120 chrX:7104556-7104676 7.76e-01 120 chr2R:23882413-23882533 3.15e-01 120 chr3L:18290514-18290634 4.80e-02 110_[+3(1.31e-05)]_2 chr3L:19056988-19057108 4.22e-02 120 chr3L:7861961-7862081 2.51e-01 120 chr2L:15442309-15442429 6.95e-01 120 chr2R:12951518-12951638 3.26e-01 120 chr3L:11309836-11309956 9.61e-01 120 chr2R:17469247-17469367 9.29e-01 120 chr2R:18850683-18850803 4.35e-01 120 chr3R:23300718-23300838 3.50e-01 120 chr3L:1802931-1803051 4.17e-02 120 chr3R:22462158-22462278 7.11e-01 120 chr3R:21834401-21834521 1.49e-01 120 chr2L:18484751-18484871 1.78e-01 120 chr3L:1534176-1534296 2.20e-02 22_[+5(5.47e-05)]_90 chr2L:15061484-15061604 3.48e-01 120 chr3R:9344912-9345032 4.55e-01 120 chr3L:18349406-18349526 7.07e-01 120 chr2R:9291631-9291751 5.88e-01 120 chr2R:16202923-16203043 1.34e-05 85_[+3(2.15e-06)]_27 chr3R:12406337-12406457 5.39e-01 120 chr3R:10449113-10449233 1.27e-02 65_[+3(7.84e-05)]_47 chrX:13109879-13109999 1.18e-01 120 chr2L:21573252-21573372 1.39e-01 120 chr3R:5354916-5355036 5.70e-01 120 chr3L:18225078-18225198 9.16e-01 120 chrX:7166456-7166576 9.34e-01 120 chr3L:10661081-10661201 6.93e-01 120 chr2R:9087671-9087791 1.24e-02 120 chr2L:14358913-14359033 1.19e-02 120 chr3R:5636891-5637011 2.04e-01 120 chr2L:7150916-7151036 3.92e-01 120 chr3L:16045438-16045558 7.19e-01 120 chr3R:25445624-25445744 5.28e-02 87_[+3(4.68e-05)]_25 chr3L:9838670-9838790 6.34e-02 120 chr3R:23061365-23061485 1.67e-04 92_[+2(4.93e-05)]_9_[+1(3.03e-06)]_\ 3 chr2R:23894867-23894987 6.68e-01 120 chr2L:11338359-11338479 9.69e-01 120 chr3L:8509835-8509955 8.50e-01 120 chr3R:12985838-12985958 8.85e-01 120 chr3L:15321084-15321204 9.56e-01 120 chr2L:17588719-17588839 6.64e-01 120 chrX:11716819-11716939 5.20e-01 120 chr3L:10893532-10893652 2.79e-01 120 chrX:3396973-3397093 9.71e-02 120 chr3R:21206418-21206538 6.22e-01 120 chr3L:8544848-8544968 2.59e-02 120 chr2R:17469450-17469570 5.74e-02 120 chr3R:11663648-11663768 9.51e-01 120 chr3L:19899002-19899122 8.58e-01 120 chr3L:6189153-6189273 3.19e-03 1_[+1(1.09e-05)]_111 chr3L:6173977-6174097 9.98e-01 120 chr3R:15351094-15351214 3.96e-01 120 chr2L:21179781-21179901 7.28e-01 120 chr2R:14803405-14803525 1.00e-01 120 chr3L:12734757-12734877 6.32e-01 120 chr3R:8362593-8362713 1.54e-01 120 chr3L:9399255-9399375 4.71e-01 120 chr3R:8867814-8867934 7.62e-01 120 chr2L:10752349-10752469 2.07e-04 9_[+4(8.63e-05)]_29_[+1(7.79e-06)]_\ 66 chr3L:6752865-6752985 9.60e-01 120 chr2L:16310777-16310897 8.08e-01 120 chr3R:19014927-19015047 1.99e-02 6_[+4(5.44e-05)]_106 chr2L:14441060-14441180 1.25e-01 120 chr2R:11397591-11397711 3.16e-01 120 chr3R:23820398-23820518 4.03e-02 43_[+4(2.14e-05)]_69 chr3R:10641411-10641531 9.73e-01 120 chr3R:8673926-8674046 8.17e-01 120 chr2R:11640972-11641092 6.32e-01 120 chr2R:19860378-19860498 7.68e-04 37_[+1(9.16e-05)]_6_[+1(3.65e-05)]_\ 61 chr3R:4775442-4775562 2.44e-03 97_[+4(4.44e-07)]_15 chr3R:18242197-18242317 8.81e-01 120 chr3R:13799682-13799802 9.42e-01 120 chr2R:14971221-14971341 2.25e-01 120 chr3L:6885790-6885910 8.86e-01 120 chr2L:1428486-1428606 1.85e-02 112_[+1(1.37e-05)] chr3R:31704697-31704817 2.86e-03 109_[+1(2.37e-05)]_3 chr3R:31771984-31772104 9.52e-02 120 chr3R:29748902-29749022 9.75e-01 120 chr3R:11628591-11628711 3.82e-02 120 chrX:14234159-14234279 2.91e-01 120 chr2L:5238343-5238463 9.98e-01 120 chr3L:16131684-16131804 6.31e-01 120 chr3R:30812631-30812751 9.94e-01 120 chr3R:18311367-18311487 9.36e-01 120 chr3R:25074694-25074814 3.27e-04 42_[+2(1.32e-06)]_70 chr3L:18748427-18748547 9.56e-01 120 chrX:13757007-13757127 1.54e-02 22_[+1(5.49e-05)]_90 chr3R:8849518-8849638 3.14e-01 120 chr3R:24817217-24817337 7.47e-01 120 chr3R:11852084-11852204 5.25e-01 120 chr3R:11368889-11369009 8.98e-01 120 chrX:12225424-12225544 9.82e-01 120 chr2L:11189244-11189364 6.70e-01 120 chr3R:15837170-15837290 9.82e-01 120 chr2R:12727656-12727776 9.26e-01 120 chr2L:16302950-16303070 4.40e-01 120 chr2L:19490223-19490343 9.49e-01 120 chr3L:21034313-21034433 9.16e-01 120 chr3R:8955035-8955155 6.15e-01 120 chr3L:3855336-3855456 1.91e-01 120 chrX:17737962-17738082 1.09e-03 93_[+1(1.79e-06)]_19 chr3L:9371037-9371157 2.15e-02 89_[+2(9.90e-05)]_23 chr2L:18305175-18305295 8.68e-01 120 chr3L:6981968-6982088 7.70e-01 120 chr2R:23697932-23698052 9.99e-02 64_[+1(4.96e-05)]_48 chr3R:15250632-15250752 8.93e-01 120 chr2L:827600-827720 3.51e-03 108_[+1(1.94e-06)]_4 chr2R:21364842-21364962 7.00e-01 120 chr3R:16837946-16838066 4.99e-01 120 chr2L:5520054-5520174 4.28e-01 120 chr2R:15381221-15381341 1.21e-01 120 chr2L:8415472-8415592 9.91e-01 120 chr3R:16771738-16771858 3.83e-02 120 chr2L:7270403-7270523 6.46e-01 120 chrX:8436924-8437044 3.50e-01 120 chr2L:7395938-7396058 4.93e-01 120 chr3L:16386035-16386155 5.91e-01 120 chr2R:15322315-15322435 6.68e-05 93_[+5(1.40e-07)]_19 chr3R:12997856-12997976 2.74e-01 120 chrX:19865779-19865899 1.57e-03 112_[+1(2.87e-05)] chr2L:21149259-21149379 3.59e-04 35_[+2(1.79e-05)]_77 chr3R:26014398-26014518 4.00e-02 34_[+2(6.97e-05)]_78 chr3L:5152468-5152588 3.14e-01 120 chr2L:14245640-14245760 6.80e-01 120 chr2L:2905160-2905280 9.83e-01 120 chr2L:10858261-10858381 1.52e-02 60_[+5(5.84e-05)]_52 chr2L:10428655-10428775 4.82e-02 120 chr3L:12336453-12336573 1.82e-03 11_[+3(5.95e-07)]_101 chr3L:18250851-18250971 7.22e-02 74_[+5(5.84e-05)]_38 chr3L:10847886-10848006 2.44e-01 120 chr3L:16779815-16779935 4.54e-01 120 chr3L:8604387-8604507 1.39e-02 [+1(4.90e-06)]_112 chr3L:10767295-10767415 3.41e-01 120 chr3L:361335-361455 1.95e-02 120 chr3L:3437313-3437433 8.25e-01 120 chr2R:13924345-13924465 4.81e-01 120 chr3L:8951165-8951285 8.56e-01 120 chr3L:11993163-11993283 2.22e-01 120 chrX:16276047-16276167 4.63e-01 120 chr3L:13929207-13929327 9.06e-01 120 chr3L:9028191-9028311 6.36e-02 120 chr2R:9286639-9286759 8.49e-01 120 chr3L:18822469-18822589 3.14e-03 109_[+3(6.40e-06)]_3 chr2L:4971508-4971628 4.32e-04 2_[+1(3.07e-05)]_3_[+3(4.11e-05)]_\ 99 chr3L:2371995-2372115 1.00e+00 120 chr2R:21183098-21183218 4.57e-01 120 chr3L:18204060-18204180 1.00e+00 120 chrX:13258808-13258928 8.30e-05 33_[+2(5.86e-07)]_79 chr3L:21821795-21821915 5.13e-03 120 chr2L:11331782-11331902 3.13e-01 120 chr3L:9508835-9508955 3.16e-01 120 chr3R:23345267-23345387 6.17e-01 120 chr2R:21709655-21709775 2.86e-05 1_[+1(1.44e-05)]_111 chr3R:26012935-26013055 1.00e+00 120 chr3L:11206072-11206192 9.14e-02 120 chr3R:8171641-8171761 1.35e-01 120 chrX:12595875-12595995 8.34e-01 120 chr2L:1462226-1462346 6.40e-01 120 chr3L:19636911-19637031 5.96e-01 120 chr3L:11334126-11334246 9.93e-01 120 chr3L:8525142-8525262 6.24e-02 26_[+5(8.69e-05)]_86 chrX:12242494-12242614 9.45e-01 120 chr3R:14741437-14741557 3.36e-03 120 chrX:12925920-12926040 4.45e-01 120 chr3L:22727884-22728004 8.77e-01 120 chr3R:21633254-21633374 8.84e-01 120 chr3R:23293488-23293608 5.26e-05 6_[+1(2.30e-07)]_106 chr2L:19377590-19377710 5.76e-03 108_[+1(1.09e-05)]_4 chr2R:14362864-14362984 3.69e-01 120 chr3R:11967505-11967625 1.83e-02 120 chr2R:13198433-13198553 4.76e-01 120 chr2L:14519399-14519519 4.40e-01 120 chr3L:1350743-1350863 2.86e-04 66_[+1(7.07e-06)]_46 chr3L:12501350-12501470 9.96e-01 120 chr3R:17680943-17681063 9.15e-01 120 chr3R:6818687-6818807 3.73e-03 12_[+1(1.56e-05)]_100 chr2R:12468412-12468532 1.63e-01 120 chr3L:3983525-3983645 6.72e-04 57_[+3(2.74e-06)]_21_[+3(7.65e-05)]_\ 26 chr2R:18676500-18676620 5.20e-01 120 chr2L:4459659-4459779 7.46e-01 120 chrX:17510667-17510787 6.96e-01 120 chr2L:8528568-8528688 9.44e-01 120 chrX:7617066-7617186 4.14e-03 61_[+1(7.79e-06)]_51 chrX:13274596-13274716 4.26e-01 120 chr3R:17535284-17535404 1.00e+00 120 chr2L:8602767-8602887 7.60e-01 120 chr3R:20588527-20588647 5.37e-01 120 chrX:11108288-11108408 3.54e-04 96_[+4(4.44e-07)]_16 chr2L:8381812-8381932 1.64e-06 24_[+2(5.45e-06)]_27_[+5(1.16e-06)]_\ 53 chr2R:23970148-23970268 6.59e-01 120 chr3L:15592674-15592794 9.24e-01 120 chr2L:14701623-14701743 2.68e-01 120 chr3R:14729364-14729484 6.68e-04 8_[+2(7.29e-07)]_104 chr3R:25880505-25880625 1.04e-04 110_[+3(1.18e-06)]_2 chr3L:15311574-15311694 9.89e-01 120 chr2L:12351057-12351177 4.50e-02 2_[+5(5.47e-05)]_110 chr3R:19031327-19031447 9.79e-01 120 chr3L:13905640-13905760 9.57e-01 120 chr3R:6468134-6468254 7.75e-01 120 chr3R:5470726-5470846 1.00e+00 120 chr3L:11350845-11350965 8.49e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************