******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1233.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:6867222-6867342 1.0000 120 chrX:6862763-6862883 1.0000 120 chrX:6866135-6866255 1.0000 120 chr3R:16309369-16309489 1.0000 120 chrX:6853419-6853539 1.0000 120 chr3R:8840887-8841007 1.0000 120 chrX:6868323-6868443 1.0000 120 chr2R:13034440-13034560 1.0000 120 chr2L:22144305-22144425 1.0000 120 chr3L:5630297-5630417 1.0000 120 chr3R:29831075-29831195 1.0000 120 chr2R:14077564-14077684 1.0000 120 chr2L:10249786-10249906 1.0000 120 chrX:12947799-12947919 1.0000 120 chr3R:8841144-8841264 1.0000 120 chr3R:20555915-20556035 1.0000 120 chr3L:6216134-6216254 1.0000 120 chr3R:6765034-6765154 1.0000 120 chr2R:10100402-10100522 1.0000 120 chr3R:21825286-21825406 1.0000 120 chr2L:12463131-12463251 1.0000 120 chrX:7931021-7931141 1.0000 120 chr2R:11206207-11206327 1.0000 120 chr3L:19132753-19132873 1.0000 120 chr3R:23803808-23803928 1.0000 120 chr3L:11351452-11351572 1.0000 120 chr3R:5032009-5032129 1.0000 120 chr3R:15810489-15810609 1.0000 120 chr2L:16790979-16791099 1.0000 120 chr3L:19349889-19350009 1.0000 120 chrX:6855720-6855840 1.0000 120 chr3L:12836456-12836576 1.0000 120 chr3R:23284412-23284532 1.0000 120 chr3L:1859693-1859813 1.0000 120 chrX:16276007-16276127 1.0000 120 chr3R:17655173-17655293 1.0000 120 chr2R:9309670-9309790 1.0000 120 chr3L:18837983-18838103 1.0000 120 chr3R:6182658-6182778 1.0000 120 chr2R:6464939-6465059 1.0000 120 chr3R:22494682-22494802 1.0000 120 chr3R:7779743-7779863 1.0000 120 chr2R:18202752-18202872 1.0000 120 chr3R:14300117-14300237 1.0000 120 chr3R:31169096-31169216 1.0000 120 chr3L:20664149-20664269 1.0000 120 chr2L:21037843-21037963 1.0000 120 chr3L:1868965-1869085 1.0000 120 chr3R:14041767-14041887 1.0000 120 chrX:18238026-18238146 1.0000 120 chr2L:2494662-2494782 1.0000 120 chr2L:4838587-4838707 1.0000 120 chr2R:12035193-12035313 1.0000 120 chr3R:29480072-29480192 1.0000 120 chr3L:8689809-8689929 1.0000 120 chr3L:11257589-11257709 1.0000 120 chr3L:7782357-7782477 1.0000 120 chr3L:11345689-11345809 1.0000 120 chrX:10582192-10582312 1.0000 120 chr2L:3280773-3280893 1.0000 120 chrX:6720111-6720231 1.0000 120 chr3L:19845603-19845723 1.0000 120 chr2R:11792792-11792912 1.0000 120 chr3L:10514966-10515086 1.0000 120 chr3L:14956422-14956542 1.0000 120 chr2L:3570686-3570806 1.0000 120 chr2R:14908279-14908399 1.0000 120 chr3L:12668184-12668304 1.0000 120 chr3R:20276151-20276271 1.0000 120 chrX:2061292-2061412 1.0000 120 chr3R:11243272-11243392 1.0000 120 chr3R:31810310-31810430 1.0000 120 chr2R:18398325-18398445 1.0000 120 chr3L:19263609-19263729 1.0000 120 chr3L:5809200-5809320 1.0000 120 chr3L:16051866-16051986 1.0000 120 chr3R:26011661-26011781 1.0000 120 chrX:1270773-1270893 1.0000 120 chr2R:10303733-10303853 1.0000 120 chr3R:16069417-16069537 1.0000 120 chr3R:16771760-16771880 1.0000 120 chr3R:4311102-4311222 1.0000 120 chr2R:17848949-17849069 1.0000 120 chr2L:12487443-12487563 1.0000 120 chr3R:15670660-15670780 1.0000 120 chr2L:8276334-8276454 1.0000 120 chr3R:16212990-16213110 1.0000 120 chr3R:5016440-5016560 1.0000 120 chr3L:628130-628250 1.0000 120 chr3L:4615213-4615333 1.0000 120 chrX:7579955-7580075 1.0000 120 chr2R:8327265-8327385 1.0000 120 chr2L:12076001-12076121 1.0000 120 chr2L:4133207-4133327 1.0000 120 chr3L:19216530-19216650 1.0000 120 chr2R:11541204-11541324 1.0000 120 chr2L:20327543-20327663 1.0000 120 chr2L:3323549-3323669 1.0000 120 chr2R:22162296-22162416 1.0000 120 chr3R:13713611-13713731 1.0000 120 chr2R:24593721-24593841 1.0000 120 chrX:12925979-12926099 1.0000 120 chr3L:15999807-15999927 1.0000 120 chr3R:19472403-19472523 1.0000 120 chr3R:9701424-9701544 1.0000 120 chr3R:28599599-28599719 1.0000 120 chr2L:7940803-7940923 1.0000 120 chr3R:14670981-14671101 1.0000 120 chr3R:23947142-23947262 1.0000 120 chr2R:14109843-14109963 1.0000 120 chr2L:5096979-5097099 1.0000 120 chr3L:13356190-13356310 1.0000 120 chr2L:12046764-12046884 1.0000 120 chr2L:6047895-6048015 1.0000 120 chr3R:4732434-4732554 1.0000 120 chr2R:16848446-16848566 1.0000 120 chr2L:19377534-19377654 1.0000 120 chr3L:15977745-15977865 1.0000 120 chrX:16103501-16103621 1.0000 120 chr3R:24809717-24809837 1.0000 120 chr3L:9509529-9509649 1.0000 120 chr3R:22147602-22147722 1.0000 120 chr2R:19357509-19357629 1.0000 120 chrX:8677565-8677685 1.0000 120 chr2L:484350-484470 1.0000 120 chr2L:10552947-10553067 1.0000 120 chr2R:18693279-18693399 1.0000 120 chr2R:16610076-16610196 1.0000 120 chr2R:18609000-18609120 1.0000 120 chr3L:20448084-20448204 1.0000 120 chr2R:18994152-18994272 1.0000 120 chr3R:26130687-26130807 1.0000 120 chr3L:824567-824687 1.0000 120 chr3R:28570929-28571049 1.0000 120 chr3L:11580086-11580206 1.0000 120 chr4:226000-226120 1.0000 120 chr2R:8615277-8615397 1.0000 120 chr2L:12721114-12721234 1.0000 120 chr3L:10362845-10362965 1.0000 120 chr2R:15034953-15035073 1.0000 120 chr2L:15909979-15910099 1.0000 120 chr3R:21420009-21420129 1.0000 120 chr3R:26937632-26937752 1.0000 120 chr3R:4732190-4732310 1.0000 120 chr2L:20911567-20911687 1.0000 120 chr3L:20516850-20516970 1.0000 120 chrX:17582807-17582927 1.0000 120 chr3R:25123361-25123481 1.0000 120 chr2L:6357085-6357205 1.0000 120 chr3L:16768390-16768510 1.0000 120 chr3L:6059234-6059354 1.0000 120 chr2L:81317-81437 1.0000 120 chr3R:24293299-24293419 1.0000 120 chr2R:6524843-6524963 1.0000 120 chr3L:8629055-8629175 1.0000 120 chr3R:23919529-23919649 1.0000 120 chr3L:15691318-15691438 1.0000 120 chr4:446083-446203 1.0000 120 chr2R:7054392-7054512 1.0000 120 chr3R:30802938-30803058 1.0000 120 chr2L:18822965-18823085 1.0000 120 chr2L:11206993-11207113 1.0000 120 chr3R:4659941-4660061 1.0000 120 chr2R:22886300-22886420 1.0000 120 chr2L:10143425-10143545 1.0000 120 chr2L:20897116-20897236 1.0000 120 chr3L:6157786-6157906 1.0000 120 chr2R:10059105-10059225 1.0000 120 chr3L:18782213-18782333 1.0000 120 chr3L:1035113-1035233 1.0000 120 chrX:17330349-17330469 1.0000 120 chr3R:10520687-10520807 1.0000 120 chr3R:6667396-6667516 1.0000 120 chrX:3188553-3188673 1.0000 120 chrX:21322632-21322752 1.0000 120 chr2L:117853-117973 1.0000 120 chrX:20631259-20631379 1.0000 120 chr2R:11640890-11641010 1.0000 120 chr3R:31395343-31395463 1.0000 120 chrX:16854860-16854980 1.0000 120 chr3R:19165038-19165158 1.0000 120 chr3R:16223707-16223827 1.0000 120 chr3R:16006074-16006194 1.0000 120 chr3L:8526249-8526369 1.0000 120 chr2L:19434423-19434543 1.0000 120 chr2R:21282352-21282472 1.0000 120 chr2R:13966174-13966294 1.0000 120 chr3R:10350835-10350955 1.0000 120 chr2R:14577783-14577903 1.0000 120 chr3L:19834278-19834398 1.0000 120 chr3R:21112607-21112727 1.0000 120 chr2L:16544634-16544754 1.0000 120 chr2R:9544940-9545060 1.0000 120 chr2L:6700810-6700930 1.0000 120 chr2L:3003548-3003668 1.0000 120 chr2R:19389416-19389536 1.0000 120 chrX:12454478-12454598 1.0000 120 chr3R:23176828-23176948 1.0000 120 chr3L:14555272-14555392 1.0000 120 chr2L:18305243-18305363 1.0000 120 chrX:13137201-13137321 1.0000 120 chr3R:20555150-20555270 1.0000 120 chr3L:16061009-16061129 1.0000 120 chr3R:23729187-23729307 1.0000 120 chr3R:29799550-29799670 1.0000 120 chr3R:29772418-29772538 1.0000 120 chr3R:22589555-22589675 1.0000 120 chr3L:21130986-21131106 1.0000 120 chrX:22837526-22837646 1.0000 120 chrX:9652119-9652239 1.0000 120 chr2R:9006882-9007002 1.0000 120 chr3L:22471745-22471865 1.0000 120 chr2L:20807748-20807868 1.0000 120 chr3L:20194890-20195010 1.0000 120 chr3R:5015341-5015461 1.0000 120 chr2R:21018389-21018509 1.0000 120 chr2R:18834915-18835035 1.0000 120 chr2R:21049405-21049525 1.0000 120 chr3R:15472848-15472968 1.0000 120 chr3L:14195870-14195990 1.0000 120 chrX:12470711-12470831 1.0000 120 chr3R:27153631-27153751 1.0000 120 chr3R:5861532-5861652 1.0000 120 chr2R:9881467-9881587 1.0000 120 chr2R:21017490-21017610 1.0000 120 chrX:17176698-17176818 1.0000 120 chr3L:16770007-16770127 1.0000 120 chr3R:14609047-14609167 1.0000 120 chr2L:7813480-7813600 1.0000 120 chr3L:8024940-8025060 1.0000 120 chr2L:6830424-6830544 1.0000 120 chr3R:11368841-11368961 1.0000 120 chr2L:6668006-6668126 1.0000 120 chr3R:21350131-21350251 1.0000 120 chr2L:11528273-11528393 1.0000 120 chr3R:20834995-20835115 1.0000 120 chr3R:26444287-26444407 1.0000 120 chr3L:10206338-10206458 1.0000 120 chr2L:10698154-10698274 1.0000 120 chr3L:13236787-13236907 1.0000 120 chr2R:16150840-16150960 1.0000 120 chr3R:20542386-20542506 1.0000 120 chr2L:6283425-6283545 1.0000 120 chr2L:6479291-6479411 1.0000 120 chr2L:8350634-8350754 1.0000 120 chr3L:12271396-12271516 1.0000 120 chr3R:21373544-21373664 1.0000 120 chr2L:20759999-20760119 1.0000 120 chr3R:21204000-21204120 1.0000 120 chr3L:12526982-12527102 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG1233/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG1233.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.306 C 0.187 G 0.191 T 0.316 Background letter frequencies (from file dataset with add-one prior applied): A 0.306 C 0.187 G 0.191 T 0.316 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TRTTTACM MEME-1 width = 8 sites = 94 llr = 693 E-value = 3.7e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRTTTACM MEME-1 Description -------------------------------------------------------------------------------- Simplified A :4:::7:4 pos.-specific C ::::::a4 probability G :6:313:: matrix T a:a79::2 bits 2.4 * 2.2 * 1.9 * 1.7 * * * Relative 1.5 * * * Entropy 1.2 *** * * (10.6 bits) 1.0 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTTTACA consensus A G G C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTACM MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:29799550-29799670 59 2.04e-05 TTACTTTCTT TGTTTACC GTAATCGTGA chr3R:23729187-23729307 41 2.04e-05 TTTGCTCGTG TGTTTACC CAACAACTAG chr2R:19357509-19357629 23 2.04e-05 ACAATTATTT TGTTTACC ACACACACAC chr3L:9509529-9509649 1 2.04e-05 . TGTTTACC CGAATCTCAA chr3R:31169096-31169216 43 2.04e-05 AACGCTCAGC TGTTTACC TAAGCGCTCA chr3R:6182658-6182778 75 2.04e-05 GCATTGCCTT TGTTTACC AAACAATGGG chr3R:20542386-20542506 70 6.64e-05 TAATTGTACT TGTTTACA TTCGAAACAT chr2R:9881467-9881587 42 6.64e-05 CTTGATTCAG TGTTTACA GAACTGTGTC chr2L:6700810-6700930 37 6.64e-05 CCACTTGCTC TGTTTGCC CACAAACATT chr2R:9544940-9545060 112 6.64e-05 GCGCTTGCCG TGTTTGCC G chr3R:10350835-10350955 99 6.64e-05 tgtgtgtctg tgtTTACA TTTGATCGTT chr2R:10059105-10059225 62 6.64e-05 GAATTCGAAT TGTTTACA GACATTCTAC chr2L:20911567-20911687 11 6.64e-05 TTGGCTTTGT TGTTTGCC TTTGTAAACA chr2R:8615277-8615397 73 6.64e-05 TGCTTGTTCG TGTTTGCC CAAGGAGTCA chr2R:18693279-18693399 110 6.64e-05 CTTGGCTTTT TGTTTGCC TTC chr2R:8327265-8327385 109 6.64e-05 TGTTTGCTCG TGTttgcc gatg chr2L:3570686-3570806 86 6.64e-05 ATTTCTAATT TGTTTACA CTCAAACAAA chr3L:11345689-11345809 66 6.64e-05 AATTCGAATT TGTTTACA TGCACACATA chr2L:2494662-2494782 34 6.64e-05 GGCTATTCTT TGTTTACA TGCGCCCTTG chr2L:21037843-21037963 54 6.64e-05 GTTTGGTTTA TGTTTGCC ATGTAAACAA chr3L:20664149-20664269 59 6.64e-05 TGCTGTCTGT TGTTTGCC ATGTTTTTGT chr3R:29831075-29831195 15 6.64e-05 TAAACACTTT TGTTTGCC ATCCGCGTCT chrX:6866135-6866255 19 6.64e-05 TGTTTAGTCG TGTTTACA TAGCAAAGCG chr2L:7813480-7813600 40 1.32e-04 AGTGCTCCAT TATTTACC CACATACACA chrX:22837526-22837646 21 1.32e-04 AAAAAACCCG TGTTTGCA ATACAATTAA chr2L:11206993-11207113 49 1.32e-04 TGTACAGTCA TATTTACC TTGATCATTT chr3R:23919529-23919649 67 1.32e-04 GCCAGGTAAA TATTTACC CTCGAGCCgt chr3L:20448084-20448204 36 1.32e-04 GCTGTTCAAA TATTTACC GATTCAACAC chr2L:10552947-10553067 14 1.32e-04 TCTTGGCTGG TATTTACC TTCGAGCTTC chr2R:24593721-24593841 60 1.32e-04 CAGTAAACAT TATTTACC CCCCGCAAAC chr2L:12487443-12487563 25 1.32e-04 AACATTGAAA TGTTTGCA CTATGCGTAT chr2R:11792792-11792912 42 1.32e-04 TTTTGTGCTC TGTTTGCA CTGTGCCGAG chr3R:23284412-23284532 101 1.32e-04 GCTGGCCAAA TATTTACC AGGCCATAAA chr2L:6668006-6668126 60 1.60e-04 AGCGCGATTG TGTGTGCC GCTAGTGATG chr2R:21049405-21049525 70 1.60e-04 AGCTAGCACT TGTGTACA TTTTCATTAC chr3R:30802938-30803058 96 1.60e-04 AGAACTACAC TGTGTACA CAGATTTACT chr2L:3323549-3323669 20 1.60e-04 TCTCATGCTT TGTGTACA ATCTAATCAA chrX:7579955-7580075 24 1.60e-04 TGAAACAGGG TGTGTACA TTGTCAGGGA chr3R:15670660-15670780 76 1.60e-04 ACAGATACTG TGTGTACA CACATATACA chr2L:4838587-4838707 93 1.60e-04 GACGTGGGTG TGTGTACA TATCGAATTT chr3R:23803808-23803928 103 1.60e-04 TGAGCGAGTG TGTGTGCC TAGCATGGCC chrX:6868323-6868443 112 1.60e-04 TAGGTTTGTG TGTGTGCC G chr2L:20807748-20807868 49 2.34e-04 GTTGTCTAAA TATTTACA GCAGGCAAAC chr2R:9006882-9007002 71 2.34e-04 CTCTGTTTCT TATTTGCC CAACAAGATA chr3R:23176828-23176948 60 2.34e-04 TTCGCGCTAA TATTTACA CTGAGACACA chr2R:14577783-14577903 25 2.34e-04 ATTTGGCATT TATTTGCC TTCTGTTACA chr3R:6667396-6667516 39 2.34e-04 TCGATTTAAA TATTTACA CAGATACTCG chr2R:17848949-17849069 34 2.34e-04 TATAAGTACA TATTTACA TACATCTTAG chr3R:16069417-16069537 97 2.34e-04 CGCATTAACA TATTTACA CGCAtcgttt chr2L:3280773-3280893 73 2.34e-04 CTTCTGTCAA TATTTGCC AAGACACATA chrX:18238026-18238146 85 2.34e-04 GGTGTGACAA TATTTACA ATGTCTTGTT chr3R:14300117-14300237 61 2.34e-04 ACTGGACTAA TATTTGCC TAAAGCCAGA chr2R:9309670-9309790 37 2.34e-04 TTTGTGGCTC TATTTACA ATACATCTGC chrX:16276007-16276127 102 2.34e-04 TTTACTAAAT TATTTACA GCCCTGAAGC chr2R:14077564-14077684 52 2.34e-04 GGAAAATCAA TATTTACA TAGACACAAG chr2L:22144305-22144425 64 2.34e-04 TGTACATGCA TATTTACA TAATATACGT chr2R:21282352-21282472 7 3.01e-04 GAGTAA TGTTTACT GCAGCTGTTT chr2R:22886300-22886420 30 3.01e-04 AAATGTGATT TGTTTACT ACTAAGATCA chr2L:18822965-18823085 20 3.01e-04 ATATGTACAA TATGTACC TTCCGTAAAC chr3L:10362845-10362965 96 3.01e-04 gtATATCGGT TGTTTACT TTTACGGTAA chr3R:24809717-24809837 83 3.01e-04 TACCGCCAAC TGTGTGCA CATTAGCCAA chr3R:19472403-19472523 49 3.01e-04 GCCACATTGG TGTGTGCA CTCCGATGCG chr3L:7782357-7782477 52 3.01e-04 TCAATATTAT TGTTTACT TCGTTGTTCA chr3L:6216134-6216254 87 3.01e-04 TTCAGAGATT TGTTTACT TTTCTGTGTT chr3R:20555915-20556035 95 3.01e-04 catacatata tatgtacc tgtttatgtG chr3R:16006074-16006194 61 4.00e-04 TAGGCTTTAA TGTTTGCT GCTGGTAAAC chrX:3188553-3188673 4 4.00e-04 GTG TGTTTGCT TGAGTGATTA chr3R:4659941-4660061 59 4.00e-04 CACAAATACA TATGTACA ACCTGTATAA chr4:226000-226120 93 4.00e-04 TTGacatatg tatgtaca tatgtatgta chr3L:5809200-5809320 87 4.00e-04 GATGACGGCA TATGTACA CACATTGTTG chr2R:18398325-18398445 45 4.00e-04 GGTGTGTATA TATGTACA GTAAATAGAG chr3R:20276151-20276271 39 4.00e-04 ACTTTCCTGT TGTTTGCT CAACACAACG chr3L:19845603-19845723 40 4.00e-04 GAGTATTAGA TATGTACA TATGTGGCCC chrX:6720111-6720231 43 4.00e-04 tgtatgtaca tatgtaca tatgtatgta chr2L:10249786-10249906 59 4.00e-04 CCTGTGTAAA TATGTACA TACACACGAT chr2L:20897116-20897236 38 4.21e-04 CTGTGCACAC TGTGTACT TTCATCTAAT chr3R:26130687-26130807 67 4.21e-04 GTCATGGCTG TGTGTACT TTGGTCGTGT chr2L:6283425-6283545 52 5.09e-04 CAAACAATTC TGTTGACC AAATAAAAAT chr3R:5015341-5015461 17 5.09e-04 TTGCTCGCCT TATTTACT TCCAGCATTT chr3R:22589555-22589675 13 5.09e-04 TTTTATTTAC TATTTACT GTCATCGCAT chr3R:19165038-19165158 48 5.09e-04 TTTAACAAAA TATTTACT GTTCGAAAGA chr3R:29480072-29480192 53 5.09e-04 ATTTGGGTAC TATTTACT TTTCCGTCGA chr3R:8840887-8841007 65 5.09e-04 ATCACTATCA TGTTGACC TAAATAAATA chr2R:22162296-22162416 96 5.22e-04 CACATCATAC TGTGTGCT GAGCGTGTTT chr3R:16223707-16223827 72 5.84e-04 AACGGAAATG TATTTGCT TAAATGGAAC chrX:17582807-17582927 46 5.84e-04 TGCCAACCAT TATTTGCT TAGTGGTAAA chr2L:15909979-15910099 52 5.84e-04 GGCCGCCGTT TGTTGGCC AGCACAAATT chr3R:22147602-22147722 62 5.84e-04 AATTTTCCAA TGTTGACA GCAGAGTAAA chrX:1270773-1270893 111 5.84e-04 GAATATTATT TATTTGCT TT chr3R:17655173-17655293 66 5.84e-04 AACCGCACCA TGTTGACA ACAACAAAAT chr3L:10206338-10206458 77 6.95e-04 TATGTGTATA TATGTGCT TATATTTAAA chr3L:14956422-14956542 74 7.39e-04 GTACGGCAAA TATTGACA AAGGACTAAG chrX:10582192-10582312 73 7.39e-04 AACAAGAAAA TATTGACA TATAGATTAA chr3R:21825286-21825406 68 7.39e-04 TGTGATCAAA TATTGACA GTATGTATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTACM MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:29799550-29799670 2e-05 58_[+1]_54 chr3R:23729187-23729307 2e-05 40_[+1]_72 chr2R:19357509-19357629 2e-05 22_[+1]_90 chr3L:9509529-9509649 2e-05 [+1]_112 chr3R:31169096-31169216 2e-05 42_[+1]_70 chr3R:6182658-6182778 2e-05 74_[+1]_38 chr3R:20542386-20542506 6.6e-05 69_[+1]_43 chr2R:9881467-9881587 6.6e-05 41_[+1]_71 chr2L:6700810-6700930 6.6e-05 36_[+1]_76 chr2R:9544940-9545060 6.6e-05 111_[+1]_1 chr3R:10350835-10350955 6.6e-05 98_[+1]_14 chr2R:10059105-10059225 6.6e-05 61_[+1]_51 chr2L:20911567-20911687 6.6e-05 10_[+1]_102 chr2R:8615277-8615397 6.6e-05 72_[+1]_40 chr2R:18693279-18693399 6.6e-05 109_[+1]_3 chr2R:8327265-8327385 6.6e-05 108_[+1]_4 chr2L:3570686-3570806 6.6e-05 85_[+1]_27 chr3L:11345689-11345809 6.6e-05 65_[+1]_47 chr2L:2494662-2494782 6.6e-05 33_[+1]_79 chr2L:21037843-21037963 6.6e-05 53_[+1]_59 chr3L:20664149-20664269 6.6e-05 58_[+1]_54 chr3R:29831075-29831195 6.6e-05 14_[+1]_98 chrX:6866135-6866255 6.6e-05 18_[+1]_94 chr2L:7813480-7813600 0.00013 39_[+1]_73 chrX:22837526-22837646 0.00013 20_[+1]_92 chr2L:11206993-11207113 0.00013 48_[+1]_64 chr3R:23919529-23919649 0.00013 66_[+1]_46 chr3L:20448084-20448204 0.00013 35_[+1]_77 chr2L:10552947-10553067 0.00013 13_[+1]_99 chr2R:24593721-24593841 0.00013 59_[+1]_53 chr2L:12487443-12487563 0.00013 24_[+1]_88 chr2R:11792792-11792912 0.00013 41_[+1]_71 chr3R:23284412-23284532 0.00013 100_[+1]_12 chr2L:6668006-6668126 0.00016 59_[+1]_53 chr2R:21049405-21049525 0.00016 69_[+1]_43 chr3R:30802938-30803058 0.00016 95_[+1]_17 chr2L:3323549-3323669 0.00016 19_[+1]_93 chrX:7579955-7580075 0.00016 23_[+1]_89 chr3R:15670660-15670780 0.00016 75_[+1]_37 chr2L:4838587-4838707 0.00016 92_[+1]_20 chr3R:23803808-23803928 0.00016 102_[+1]_10 chrX:6868323-6868443 0.00016 111_[+1]_1 chr2L:20807748-20807868 0.00023 48_[+1]_64 chr2R:9006882-9007002 0.00023 70_[+1]_42 chr3R:23176828-23176948 0.00023 59_[+1]_53 chr2R:14577783-14577903 0.00023 24_[+1]_88 chr3R:6667396-6667516 0.00023 38_[+1]_74 chr2R:17848949-17849069 0.00023 33_[+1]_79 chr3R:16069417-16069537 0.00023 96_[+1]_16 chr2L:3280773-3280893 0.00023 72_[+1]_40 chrX:18238026-18238146 0.00023 84_[+1]_28 chr3R:14300117-14300237 0.00023 60_[+1]_52 chr2R:9309670-9309790 0.00023 36_[+1]_76 chrX:16276007-16276127 0.00023 101_[+1]_11 chr2R:14077564-14077684 0.00023 51_[+1]_61 chr2L:22144305-22144425 0.00023 63_[+1]_49 chr2R:21282352-21282472 0.0003 6_[+1]_106 chr2R:22886300-22886420 0.0003 29_[+1]_83 chr2L:18822965-18823085 0.0003 19_[+1]_93 chr3L:10362845-10362965 0.0003 95_[+1]_17 chr3R:24809717-24809837 0.0003 82_[+1]_30 chr3R:19472403-19472523 0.0003 48_[+1]_64 chr3L:7782357-7782477 0.0003 51_[+1]_61 chr3L:6216134-6216254 0.0003 86_[+1]_26 chr3R:20555915-20556035 0.0003 94_[+1]_18 chr3R:16006074-16006194 0.0004 60_[+1]_52 chrX:3188553-3188673 0.0004 3_[+1]_109 chr3R:4659941-4660061 0.0004 58_[+1]_54 chr4:226000-226120 0.0004 92_[+1]_20 chr3L:5809200-5809320 0.0004 86_[+1]_26 chr2R:18398325-18398445 0.0004 44_[+1]_68 chr3R:20276151-20276271 0.0004 38_[+1]_74 chr3L:19845603-19845723 0.0004 39_[+1]_73 chrX:6720111-6720231 0.0004 42_[+1]_70 chr2L:10249786-10249906 0.0004 58_[+1]_54 chr2L:20897116-20897236 0.00042 37_[+1]_75 chr3R:26130687-26130807 0.00042 66_[+1]_46 chr2L:6283425-6283545 0.00051 51_[+1]_61 chr3R:5015341-5015461 0.00051 16_[+1]_96 chr3R:22589555-22589675 0.00051 12_[+1]_100 chr3R:19165038-19165158 0.00051 47_[+1]_65 chr3R:29480072-29480192 0.00051 52_[+1]_60 chr3R:8840887-8841007 0.00051 64_[+1]_48 chr2R:22162296-22162416 0.00052 95_[+1]_17 chr3R:16223707-16223827 0.00058 71_[+1]_41 chrX:17582807-17582927 0.00058 45_[+1]_67 chr2L:15909979-15910099 0.00058 51_[+1]_61 chr3R:22147602-22147722 0.00058 61_[+1]_51 chrX:1270773-1270893 0.00058 110_[+1]_2 chr3R:17655173-17655293 0.00058 65_[+1]_47 chr3L:10206338-10206458 0.00069 76_[+1]_36 chr3L:14956422-14956542 0.00074 73_[+1]_39 chrX:10582192-10582312 0.00074 72_[+1]_40 chr3R:21825286-21825406 0.00074 67_[+1]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTACM MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRTTTACM width=8 seqs=94 chr3R:29799550-29799670 ( 59) TGTTTACC 1 chr3R:23729187-23729307 ( 41) TGTTTACC 1 chr2R:19357509-19357629 ( 23) TGTTTACC 1 chr3L:9509529-9509649 ( 1) TGTTTACC 1 chr3R:31169096-31169216 ( 43) TGTTTACC 1 chr3R:6182658-6182778 ( 75) TGTTTACC 1 chr3R:20542386-20542506 ( 70) TGTTTACA 1 chr2R:9881467-9881587 ( 42) TGTTTACA 1 chr2L:6700810-6700930 ( 37) TGTTTGCC 1 chr2R:9544940-9545060 ( 112) TGTTTGCC 1 chr3R:10350835-10350955 ( 99) TGTTTACA 1 chr2R:10059105-10059225 ( 62) TGTTTACA 1 chr2L:20911567-20911687 ( 11) TGTTTGCC 1 chr2R:8615277-8615397 ( 73) TGTTTGCC 1 chr2R:18693279-18693399 ( 110) TGTTTGCC 1 chr2R:8327265-8327385 ( 109) TGTTTGCC 1 chr2L:3570686-3570806 ( 86) TGTTTACA 1 chr3L:11345689-11345809 ( 66) TGTTTACA 1 chr2L:2494662-2494782 ( 34) TGTTTACA 1 chr2L:21037843-21037963 ( 54) TGTTTGCC 1 chr3L:20664149-20664269 ( 59) TGTTTGCC 1 chr3R:29831075-29831195 ( 15) TGTTTGCC 1 chrX:6866135-6866255 ( 19) TGTTTACA 1 chr2L:7813480-7813600 ( 40) TATTTACC 1 chrX:22837526-22837646 ( 21) TGTTTGCA 1 chr2L:11206993-11207113 ( 49) TATTTACC 1 chr3R:23919529-23919649 ( 67) TATTTACC 1 chr3L:20448084-20448204 ( 36) TATTTACC 1 chr2L:10552947-10553067 ( 14) TATTTACC 1 chr2R:24593721-24593841 ( 60) TATTTACC 1 chr2L:12487443-12487563 ( 25) TGTTTGCA 1 chr2R:11792792-11792912 ( 42) TGTTTGCA 1 chr3R:23284412-23284532 ( 101) TATTTACC 1 chr2L:6668006-6668126 ( 60) TGTGTGCC 1 chr2R:21049405-21049525 ( 70) TGTGTACA 1 chr3R:30802938-30803058 ( 96) TGTGTACA 1 chr2L:3323549-3323669 ( 20) TGTGTACA 1 chrX:7579955-7580075 ( 24) TGTGTACA 1 chr3R:15670660-15670780 ( 76) TGTGTACA 1 chr2L:4838587-4838707 ( 93) TGTGTACA 1 chr3R:23803808-23803928 ( 103) TGTGTGCC 1 chrX:6868323-6868443 ( 112) TGTGTGCC 1 chr2L:20807748-20807868 ( 49) TATTTACA 1 chr2R:9006882-9007002 ( 71) TATTTGCC 1 chr3R:23176828-23176948 ( 60) TATTTACA 1 chr2R:14577783-14577903 ( 25) TATTTGCC 1 chr3R:6667396-6667516 ( 39) TATTTACA 1 chr2R:17848949-17849069 ( 34) TATTTACA 1 chr3R:16069417-16069537 ( 97) TATTTACA 1 chr2L:3280773-3280893 ( 73) TATTTGCC 1 chrX:18238026-18238146 ( 85) TATTTACA 1 chr3R:14300117-14300237 ( 61) TATTTGCC 1 chr2R:9309670-9309790 ( 37) TATTTACA 1 chrX:16276007-16276127 ( 102) TATTTACA 1 chr2R:14077564-14077684 ( 52) TATTTACA 1 chr2L:22144305-22144425 ( 64) TATTTACA 1 chr2R:21282352-21282472 ( 7) TGTTTACT 1 chr2R:22886300-22886420 ( 30) TGTTTACT 1 chr2L:18822965-18823085 ( 20) TATGTACC 1 chr3L:10362845-10362965 ( 96) TGTTTACT 1 chr3R:24809717-24809837 ( 83) TGTGTGCA 1 chr3R:19472403-19472523 ( 49) TGTGTGCA 1 chr3L:7782357-7782477 ( 52) TGTTTACT 1 chr3L:6216134-6216254 ( 87) TGTTTACT 1 chr3R:20555915-20556035 ( 95) TATGTACC 1 chr3R:16006074-16006194 ( 61) TGTTTGCT 1 chrX:3188553-3188673 ( 4) TGTTTGCT 1 chr3R:4659941-4660061 ( 59) TATGTACA 1 chr4:226000-226120 ( 93) TATGTACA 1 chr3L:5809200-5809320 ( 87) TATGTACA 1 chr2R:18398325-18398445 ( 45) TATGTACA 1 chr3R:20276151-20276271 ( 39) TGTTTGCT 1 chr3L:19845603-19845723 ( 40) TATGTACA 1 chrX:6720111-6720231 ( 43) TATGTACA 1 chr2L:10249786-10249906 ( 59) TATGTACA 1 chr2L:20897116-20897236 ( 38) TGTGTACT 1 chr3R:26130687-26130807 ( 67) TGTGTACT 1 chr2L:6283425-6283545 ( 52) TGTTGACC 1 chr3R:5015341-5015461 ( 17) TATTTACT 1 chr3R:22589555-22589675 ( 13) TATTTACT 1 chr3R:19165038-19165158 ( 48) TATTTACT 1 chr3R:29480072-29480192 ( 53) TATTTACT 1 chr3R:8840887-8841007 ( 65) TGTTGACC 1 chr2R:22162296-22162416 ( 96) TGTGTGCT 1 chr3R:16223707-16223827 ( 72) TATTTGCT 1 chrX:17582807-17582927 ( 46) TATTTGCT 1 chr2L:15909979-15910099 ( 52) TGTTGGCC 1 chr3R:22147602-22147722 ( 62) TGTTGACA 1 chrX:1270773-1270893 ( 111) TATTTGCT 1 chr3R:17655173-17655293 ( 66) TGTTGACA 1 chr3L:10206338-10206458 ( 77) TATGTGCT 1 chr3L:14956422-14956542 ( 74) TATTGACA 1 chrX:10582192-10582312 ( 73) TATTGACA 1 chr3R:21825286-21825406 ( 68) TATTGACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTACM MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1293 E= 3.7e-016 -1320 -1320 -1320 166 51 -1320 156 -1320 -1320 -1320 -1320 166 -1320 -1320 42 124 -1320 -1320 -117 154 115 -1320 74 -1320 -1320 242 -1320 -1320 51 95 -1320 -64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTACM MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 94 E= 3.7e-016 0.000000 0.000000 0.000000 1.000000 0.436170 0.000000 0.563830 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.255319 0.744681 0.000000 0.000000 0.085106 0.914894 0.680851 0.000000 0.319149 0.000000 0.000000 1.000000 0.000000 0.000000 0.436170 0.361702 0.000000 0.202128 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTACM MEME-1 regular expression -------------------------------------------------------------------------------- T[GA]T[TG]T[AG]C[ACT] -------------------------------------------------------------------------------- Time 7.45 secs. ******************************************************************************** ******************************************************************************** MOTIF GYAAAYAW MEME-2 width = 8 sites = 96 llr = 669 E-value = 2.2e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYAAAYAW MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3:a9a:a5 pos.-specific C :4:1:7:1 probability G 7::::::1 matrix T :5:::3:3 bits 2.4 2.2 1.9 1.7 * * * Relative 1.5 * *** * Entropy 1.2 * ***** (10.0 bits) 1.0 * ***** 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel GTAAACAA consensus AC T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAAYAW MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:13236787-13236907 33 1.79e-05 AACTCAGCAG GCAAACAA ATGGCAAGGG chr2R:18609000-18609120 111 1.79e-05 TGTTGAAGAG GCAAACAA AC chr2L:20327543-20327663 79 1.79e-05 TGACCGTTAG GCAAACAA TGAACAATTC chr2R:11541204-11541324 32 1.79e-05 TGGGGGCACA GCAAACAA AACTGACATT chr2L:12076001-12076121 104 1.79e-05 GAGCCAAGCG GCAAACAA CGCCCAATT chr2R:11792792-11792912 14 1.79e-05 GAACAGGCAA GCAAACAA CATGAAATAC chr3L:8689809-8689929 82 1.79e-05 aaacaaataa gcaaacaa acaaacaaGC chr3R:22494682-22494802 100 1.79e-05 CCGGCTGATT GCAAACAA TTCCGATTGA chr3R:23284412-23284532 10 1.79e-05 TTTGGATAT GCAAACAA ACTACTGATA chr2L:12463131-12463251 1 1.79e-05 . GCAAACAA AATTCATTAA chr3R:16006074-16006194 73 4.82e-05 TTTGCTGCTG GTAAACAA GGCAACTATT chr2L:18822965-18823085 63 4.82e-05 ACGATGAATT GTAAACAA GCGGAGCCTT chr2L:20911567-20911687 22 4.82e-05 GTTTGCCTTT GTAAACAA TGGGAGGCTT chr2R:8615277-8615397 95 4.82e-05 GAGTCAATAT GTAAACAA TTATCTAATG chr3R:26130687-26130807 49 4.82e-05 CGACCATAAA GTAAACAA GTCATGGCTG chr3R:22147602-22147722 95 4.82e-05 ATACACGTTG GTAAACAA AGGGCAAGGA chr2R:18398325-18398445 91 4.82e-05 ACACTGACGG GTAAACAA CACGTATCAT chr3L:11345689-11345809 49 4.82e-05 TTAGGCGTAT GTAAACAA ATTCGAATTT chr3R:29480072-29480192 79 4.82e-05 GACAGCCAAA GTAAACAA AGCCGCATCG chr2L:21037843-21037963 64 4.82e-05 TGTTTGCCAT GTAAACAA ATAAACAAAT chr2R:6464939-6465059 82 4.82e-05 cagcataaaa gtaaacaa cagcataaca chr2L:8350634-8350754 6 6.67e-05 ACTGA GCAAACAT AGTATGCTAA chr2R:21049405-21049525 47 6.67e-05 CTGGCGATGA GCAAACAT TGCATAGCTA chrX:16103501-16103621 95 6.67e-05 GTGAAAACAA GCAAACAT TTTACTGAAA chr3L:4615213-4615333 64 6.67e-05 TGCTTGCTGA GCAAACAT GGTAGATAAA chr3R:29831075-29831195 82 6.67e-05 TTAGAAAGCG GCAAACAT GCAAAATTTA chr2L:20807748-20807868 61 7.77e-05 TTTACAGCAG GCAAACAC ACCCACTTTG chr2L:19434423-19434543 90 7.77e-05 AGTCAGGCAT GCAAACAC TCCATAGGTT chr2L:2494662-2494782 53 7.77e-05 GCGCCCTTGT GCAAACAC ACGGAAAACC chr3R:6765034-6765154 34 7.77e-05 GTCGGCTTGT GCAAACAC ACATTAATAT chr2R:24593721-24593841 52 1.09e-04 GCAAGAATCA GTAAACAT TATTTACCCC chr3R:22589555-22589675 99 1.50e-04 ACAAAATAAG GCAAATAA TTTGTCTTTC chr3R:24293299-24293419 48 1.69e-04 TATTTTTTCA GTAAACAC AATTGATTGT chr3R:24809717-24809837 19 1.69e-04 ATGTCAAAAA GTAAACAC ATCACCCACG chr2L:3570686-3570806 15 1.69e-04 CAGTGGTTAA GTAAACAC AGCTCACACA chr2R:16150840-16150960 10 2.68e-04 AAGAGATAG ACAAACAA AACAGACAGC chr2L:6668006-6668126 38 2.68e-04 ATATGGGTGT GTAAACAG TGTGAGCGCG chr2R:13966174-13966294 72 2.68e-04 GGTCGGACTA ACAAACAA CCCCGAGCTG chr3L:8526249-8526369 37 2.68e-04 TACATTTTGC GTAAATAA ATACTCTTAT chr3R:4659941-4660061 92 2.68e-04 AACGACTGCC GTAAACAG CCAACTGCGA chr2L:15909979-15910099 73 2.68e-04 ACAAATTTGC GTAAACAG AGCACTATTT chr3L:15999807-15999927 100 2.68e-04 GGTAAGGAAA GTAAACAG TTTTTCTCAC chr3L:18837983-18838103 65 2.68e-04 GCTGTCAAAT GTAAATAA CCAAAAGAAA chr2R:9309670-9309790 109 2.68e-04 TTTTTCACTT GTAAATAA TTGC chr3R:21825286-21825406 37 2.68e-04 TATTTGACTT GTAAATAA ATAAACAAGG chr3R:20834995-20835115 86 3.16e-04 AAGTTTGCGT ATAAACAA AGAGCTTTTT chr3R:21350131-21350251 54 3.16e-04 CTCGATTTGT ATAAACAA GACCCACAAA chr3R:4732190-4732310 44 3.16e-04 ATTTTCTTCT ATAAACAA TTCTATAAAT chr3R:23176828-23176948 27 3.47e-04 AACTTCAAAT GCAAATAT TCGCCGGTTC chrX:21322632-21322752 71 3.47e-04 TTAAAATTTT GCAAATAT TTAGGAATAA chrX:17330349-17330469 44 3.47e-04 AATGGACATT GCAAATAT TTTGATGCAC chr4:226000-226120 18 3.47e-04 tgtatgtatA GCAAATAT ATAATTTTAG chr2R:16848446-16848566 67 3.47e-04 GGCATATTAT GCAAATAT TGAACAGGCT chr3R:14670981-14671101 20 3.47e-04 ACCCGAAAAA GCAAATAT TTGTGGCCTA chr2R:22162296-22162416 15 3.47e-04 AAAATGTCGA GCAAATAT TGCGATACCA chrX:6720111-6720231 16 3.47e-04 GTTTAGTTAA GCAAatat atgtacatat chr3R:6667396-6667516 8 3.77e-04 CGTCGTC GCACACAA GACAACACTA chr2R:19357509-19357629 9 3.77e-04 CGAATGTC GCACACAA TTATTTTGTT chr3L:21130986-21131106 44 4.59e-04 AAGCACTTGC GTAAATAT AAATATTGAA chr2L:6700810-6700930 46 4.59e-04 CTGTTTGCCC ACAAACAT TGGCAATCGG chr2R:18693279-18693399 3 4.59e-04 GC GTAAATAT GTGTACAATA chr2L:484350-484470 61 4.59e-04 AATATATGGC ACAAACAT AAATAAATCT chrX:8677565-8677685 58 4.59e-04 AGCTCAAGTG GTAAATAT TTCTACAGAA chr3L:14956422-14956542 39 4.78e-04 TTCTCGCTGG GCAAATAG AAGTTTTCTT chrX:12947799-12947919 20 4.78e-04 CGCGAAATCA GCAAATAG ACCGGAAGTC chr2L:117853-117973 87 5.46e-04 TGGACATTAA GTACACAA TGGATAGATA chr2R:6524843-6524963 99 5.46e-04 CTATCCGTCG GTACACAA AATGTTGTTT chrX:17582807-17582927 59 5.46e-04 TTGCTTAGTG GTAAATAC ATATTTGTAT chr2R:14109843-14109963 18 5.46e-04 ATCAATAAAA GTAAATAC GAGAAATGAA chr2L:6830424-6830544 62 5.96e-04 ACTGATATTA ATAAACAT CCGTAACTTT chrX:17176698-17176818 30 5.96e-04 TAAGCATTGG ATAAACAT TGGATTATGG chr3R:28570929-28571049 46 5.96e-04 AAGTGCTCGA ATAAACAT AAATAATAAA chr3L:10514966-10515086 29 5.96e-04 ataaaaatat ataaacat aatcaatatg chr3L:22471745-22471865 86 6.94e-04 TGGTGGTTAG GTAAATAG TTTTAATCGA chr3L:14555272-14555392 54 6.94e-04 TAATCGCCAA ACAAACAG AAAGGTGCCA chr2L:11206993-11207113 14 6.94e-04 GTTGAGCGGT ACAAATAA ACGAATGTAT chr3R:23947142-23947262 65 6.94e-04 GTTTGCGTTG GTAAATAG TGACAAGTTT chr3R:19472403-19472523 3 6.94e-04 AA ACAAATAA ATATTTGCTC chr3L:19263609-19263729 37 6.94e-04 AGATAAGTTA GTAAATAG TAATATATAA chr2R:9006882-9007002 86 7.24e-04 GCCCAACAAG ATAAACAC AGATTCCAAA chr3R:5016440-5016560 68 7.24e-04 TATTTTCCAT ATAAACAC TCGGCTGCTT chr3R:21204000-21204120 59 7.64e-04 ATCGCTCAAA GAAAACAA CAAATGTACA chrX:20631259-20631379 49 7.64e-04 ATAGAAAATG GAAAACAA AATGCAGATC chr3R:6182658-6182778 7 7.64e-04 AAAAAT GAAAACAA AAGCGTGTGA chr3L:19132753-19132873 51 7.64e-04 GGAAGCGACA GCACACAT GAACAAACCG chr3L:12271396-12271516 54 8.77e-04 aaaaacttat ataaataa ttaagataaa chr3R:27153631-27153751 65 8.77e-04 TCCCTAGAGA ATAAATAA TAATGCACTT chr3R:10520687-10520807 60 8.77e-04 GACTACTTTA ATAAATAA TCTTCTTGGA chr3R:21420009-21420129 110 8.77e-04 Gaataaaaaa ataaataa aat chr2R:18994152-18994272 91 8.77e-04 TTAAATTTTT ATAAATAA CAATCGACAC chr3L:20448084-20448204 102 8.77e-04 TTGACACAAG ATAAATAA TATGTCAGAT chrX:12925979-12926099 12 8.77e-04 ATaacttaaa ataaataa ttaaacttga chr3R:16771760-16771880 61 8.77e-04 TAATTTATTA ATAAATAA ATATTTTTTA chr3R:15472848-15472968 83 9.89e-04 TTCTAATTCG GTACACAC CAAATTTGTG chr3R:8841144-8841264 51 1.11e-03 GACTCGGATT GAAAACAT ACGCTAATAA chrX:6853419-6853539 18 1.11e-03 TGAGCGTGCA ACACACAA CTTGAATAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAAYAW MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:13236787-13236907 1.8e-05 32_[+2]_80 chr2R:18609000-18609120 1.8e-05 110_[+2]_2 chr2L:20327543-20327663 1.8e-05 78_[+2]_34 chr2R:11541204-11541324 1.8e-05 31_[+2]_81 chr2L:12076001-12076121 1.8e-05 103_[+2]_9 chr2R:11792792-11792912 1.8e-05 13_[+2]_99 chr3L:8689809-8689929 1.8e-05 81_[+2]_31 chr3R:22494682-22494802 1.8e-05 99_[+2]_13 chr3R:23284412-23284532 1.8e-05 9_[+2]_103 chr2L:12463131-12463251 1.8e-05 [+2]_112 chr3R:16006074-16006194 4.8e-05 72_[+2]_40 chr2L:18822965-18823085 4.8e-05 62_[+2]_50 chr2L:20911567-20911687 4.8e-05 21_[+2]_91 chr2R:8615277-8615397 4.8e-05 94_[+2]_18 chr3R:26130687-26130807 4.8e-05 48_[+2]_64 chr3R:22147602-22147722 4.8e-05 94_[+2]_18 chr2R:18398325-18398445 4.8e-05 90_[+2]_22 chr3L:11345689-11345809 4.8e-05 48_[+2]_64 chr3R:29480072-29480192 4.8e-05 78_[+2]_34 chr2L:21037843-21037963 4.8e-05 63_[+2]_49 chr2R:6464939-6465059 4.8e-05 81_[+2]_31 chr2L:8350634-8350754 6.7e-05 5_[+2]_107 chr2R:21049405-21049525 6.7e-05 46_[+2]_66 chrX:16103501-16103621 6.7e-05 94_[+2]_18 chr3L:4615213-4615333 6.7e-05 63_[+2]_49 chr3R:29831075-29831195 6.7e-05 81_[+2]_31 chr2L:20807748-20807868 7.8e-05 60_[+2]_52 chr2L:19434423-19434543 7.8e-05 89_[+2]_23 chr2L:2494662-2494782 7.8e-05 52_[+2]_60 chr3R:6765034-6765154 7.8e-05 33_[+2]_79 chr2R:24593721-24593841 0.00011 51_[+2]_61 chr3R:22589555-22589675 0.00015 98_[+2]_14 chr3R:24293299-24293419 0.00017 47_[+2]_65 chr3R:24809717-24809837 0.00017 18_[+2]_94 chr2L:3570686-3570806 0.00017 14_[+2]_98 chr2R:16150840-16150960 0.00027 9_[+2]_103 chr2L:6668006-6668126 0.00027 37_[+2]_75 chr2R:13966174-13966294 0.00027 71_[+2]_41 chr3L:8526249-8526369 0.00027 36_[+2]_76 chr3R:4659941-4660061 0.00027 91_[+2]_21 chr2L:15909979-15910099 0.00027 72_[+2]_40 chr3L:15999807-15999927 0.00027 99_[+2]_13 chr3L:18837983-18838103 0.00027 64_[+2]_48 chr2R:9309670-9309790 0.00027 108_[+2]_4 chr3R:21825286-21825406 0.00027 36_[+2]_76 chr3R:20834995-20835115 0.00032 85_[+2]_27 chr3R:21350131-21350251 0.00032 53_[+2]_59 chr3R:4732190-4732310 0.00032 43_[+2]_69 chr3R:23176828-23176948 0.00035 26_[+2]_86 chrX:21322632-21322752 0.00035 70_[+2]_42 chrX:17330349-17330469 0.00035 43_[+2]_69 chr4:226000-226120 0.00035 17_[+2]_95 chr2R:16848446-16848566 0.00035 66_[+2]_46 chr3R:14670981-14671101 0.00035 19_[+2]_93 chr2R:22162296-22162416 0.00035 14_[+2]_98 chrX:6720111-6720231 0.00035 15_[+2]_97 chr3R:6667396-6667516 0.00038 7_[+2]_105 chr2R:19357509-19357629 0.00038 8_[+2]_104 chr3L:21130986-21131106 0.00046 43_[+2]_69 chr2L:6700810-6700930 0.00046 45_[+2]_67 chr2R:18693279-18693399 0.00046 2_[+2]_110 chr2L:484350-484470 0.00046 60_[+2]_52 chrX:8677565-8677685 0.00046 57_[+2]_55 chr3L:14956422-14956542 0.00048 38_[+2]_74 chrX:12947799-12947919 0.00048 19_[+2]_93 chr2L:117853-117973 0.00055 86_[+2]_26 chr2R:6524843-6524963 0.00055 98_[+2]_14 chrX:17582807-17582927 0.00055 58_[+2]_54 chr2R:14109843-14109963 0.00055 17_[+2]_95 chr2L:6830424-6830544 0.0006 61_[+2]_51 chrX:17176698-17176818 0.0006 29_[+2]_83 chr3R:28570929-28571049 0.0006 45_[+2]_67 chr3L:10514966-10515086 0.0006 28_[+2]_84 chr3L:22471745-22471865 0.00069 85_[+2]_27 chr3L:14555272-14555392 0.00069 53_[+2]_59 chr2L:11206993-11207113 0.00069 13_[+2]_99 chr3R:23947142-23947262 0.00069 64_[+2]_48 chr3R:19472403-19472523 0.00069 2_[+2]_110 chr3L:19263609-19263729 0.00069 36_[+2]_76 chr2R:9006882-9007002 0.00072 85_[+2]_27 chr3R:5016440-5016560 0.00072 67_[+2]_45 chr3R:21204000-21204120 0.00076 58_[+2]_54 chrX:20631259-20631379 0.00076 48_[+2]_64 chr3R:6182658-6182778 0.00076 6_[+2]_106 chr3L:19132753-19132873 0.00076 50_[+2]_62 chr3L:12271396-12271516 0.00088 53_[+2]_59 chr3R:27153631-27153751 0.00088 64_[+2]_48 chr3R:10520687-10520807 0.00088 59_[+2]_53 chr3R:21420009-21420129 0.00088 109_[+2]_3 chr2R:18994152-18994272 0.00088 90_[+2]_22 chr3L:20448084-20448204 0.00088 101_[+2]_11 chrX:12925979-12926099 0.00088 11_[+2]_101 chr3R:16771760-16771880 0.00088 60_[+2]_52 chr3R:15472848-15472968 0.00099 82_[+2]_30 chr3R:8841144-8841264 0.0011 50_[+2]_62 chrX:6853419-6853539 0.0011 17_[+2]_95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAAYAW MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYAAAYAW width=8 seqs=96 chr3L:13236787-13236907 ( 33) GCAAACAA 1 chr2R:18609000-18609120 ( 111) GCAAACAA 1 chr2L:20327543-20327663 ( 79) GCAAACAA 1 chr2R:11541204-11541324 ( 32) GCAAACAA 1 chr2L:12076001-12076121 ( 104) GCAAACAA 1 chr2R:11792792-11792912 ( 14) GCAAACAA 1 chr3L:8689809-8689929 ( 82) GCAAACAA 1 chr3R:22494682-22494802 ( 100) GCAAACAA 1 chr3R:23284412-23284532 ( 10) GCAAACAA 1 chr2L:12463131-12463251 ( 1) GCAAACAA 1 chr3R:16006074-16006194 ( 73) GTAAACAA 1 chr2L:18822965-18823085 ( 63) GTAAACAA 1 chr2L:20911567-20911687 ( 22) GTAAACAA 1 chr2R:8615277-8615397 ( 95) GTAAACAA 1 chr3R:26130687-26130807 ( 49) GTAAACAA 1 chr3R:22147602-22147722 ( 95) GTAAACAA 1 chr2R:18398325-18398445 ( 91) GTAAACAA 1 chr3L:11345689-11345809 ( 49) GTAAACAA 1 chr3R:29480072-29480192 ( 79) GTAAACAA 1 chr2L:21037843-21037963 ( 64) GTAAACAA 1 chr2R:6464939-6465059 ( 82) GTAAACAA 1 chr2L:8350634-8350754 ( 6) GCAAACAT 1 chr2R:21049405-21049525 ( 47) GCAAACAT 1 chrX:16103501-16103621 ( 95) GCAAACAT 1 chr3L:4615213-4615333 ( 64) GCAAACAT 1 chr3R:29831075-29831195 ( 82) GCAAACAT 1 chr2L:20807748-20807868 ( 61) GCAAACAC 1 chr2L:19434423-19434543 ( 90) GCAAACAC 1 chr2L:2494662-2494782 ( 53) GCAAACAC 1 chr3R:6765034-6765154 ( 34) GCAAACAC 1 chr2R:24593721-24593841 ( 52) GTAAACAT 1 chr3R:22589555-22589675 ( 99) GCAAATAA 1 chr3R:24293299-24293419 ( 48) GTAAACAC 1 chr3R:24809717-24809837 ( 19) GTAAACAC 1 chr2L:3570686-3570806 ( 15) GTAAACAC 1 chr2R:16150840-16150960 ( 10) ACAAACAA 1 chr2L:6668006-6668126 ( 38) GTAAACAG 1 chr2R:13966174-13966294 ( 72) ACAAACAA 1 chr3L:8526249-8526369 ( 37) GTAAATAA 1 chr3R:4659941-4660061 ( 92) GTAAACAG 1 chr2L:15909979-15910099 ( 73) GTAAACAG 1 chr3L:15999807-15999927 ( 100) GTAAACAG 1 chr3L:18837983-18838103 ( 65) GTAAATAA 1 chr2R:9309670-9309790 ( 109) GTAAATAA 1 chr3R:21825286-21825406 ( 37) GTAAATAA 1 chr3R:20834995-20835115 ( 86) ATAAACAA 1 chr3R:21350131-21350251 ( 54) ATAAACAA 1 chr3R:4732190-4732310 ( 44) ATAAACAA 1 chr3R:23176828-23176948 ( 27) GCAAATAT 1 chrX:21322632-21322752 ( 71) GCAAATAT 1 chrX:17330349-17330469 ( 44) GCAAATAT 1 chr4:226000-226120 ( 18) GCAAATAT 1 chr2R:16848446-16848566 ( 67) GCAAATAT 1 chr3R:14670981-14671101 ( 20) GCAAATAT 1 chr2R:22162296-22162416 ( 15) GCAAATAT 1 chrX:6720111-6720231 ( 16) GCAAATAT 1 chr3R:6667396-6667516 ( 8) GCACACAA 1 chr2R:19357509-19357629 ( 9) GCACACAA 1 chr3L:21130986-21131106 ( 44) GTAAATAT 1 chr2L:6700810-6700930 ( 46) ACAAACAT 1 chr2R:18693279-18693399 ( 3) GTAAATAT 1 chr2L:484350-484470 ( 61) ACAAACAT 1 chrX:8677565-8677685 ( 58) GTAAATAT 1 chr3L:14956422-14956542 ( 39) GCAAATAG 1 chrX:12947799-12947919 ( 20) GCAAATAG 1 chr2L:117853-117973 ( 87) GTACACAA 1 chr2R:6524843-6524963 ( 99) GTACACAA 1 chrX:17582807-17582927 ( 59) GTAAATAC 1 chr2R:14109843-14109963 ( 18) GTAAATAC 1 chr2L:6830424-6830544 ( 62) ATAAACAT 1 chrX:17176698-17176818 ( 30) ATAAACAT 1 chr3R:28570929-28571049 ( 46) ATAAACAT 1 chr3L:10514966-10515086 ( 29) ATAAACAT 1 chr3L:22471745-22471865 ( 86) GTAAATAG 1 chr3L:14555272-14555392 ( 54) ACAAACAG 1 chr2L:11206993-11207113 ( 14) ACAAATAA 1 chr3R:23947142-23947262 ( 65) GTAAATAG 1 chr3R:19472403-19472523 ( 3) ACAAATAA 1 chr3L:19263609-19263729 ( 37) GTAAATAG 1 chr2R:9006882-9007002 ( 86) ATAAACAC 1 chr3R:5016440-5016560 ( 68) ATAAACAC 1 chr3R:21204000-21204120 ( 59) GAAAACAA 1 chrX:20631259-20631379 ( 49) GAAAACAA 1 chr3R:6182658-6182778 ( 7) GAAAACAA 1 chr3L:19132753-19132873 ( 51) GCACACAT 1 chr3L:12271396-12271516 ( 54) ATAAATAA 1 chr3R:27153631-27153751 ( 65) ATAAATAA 1 chr3R:10520687-10520807 ( 60) ATAAATAA 1 chr3R:21420009-21420129 ( 110) ATAAATAA 1 chr2R:18994152-18994272 ( 91) ATAAATAA 1 chr3L:20448084-20448204 ( 102) ATAAATAA 1 chrX:12925979-12926099 ( 12) ATAAATAA 1 chr3R:16771760-16771880 ( 61) ATAAATAA 1 chr3R:15472848-15472968 ( 83) GTACACAC 1 chr3R:8841144-8841264 ( 51) GAAAACAT 1 chrX:6853419-6853539 ( 18) ACACACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAAYAW MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.29825 E= 2.2e-001 -23 -1323 195 -1323 -288 119 -1323 75 171 -1323 -1323 -1323 160 -136 -1323 -1323 171 -1323 -1323 -1323 -1323 181 -1323 12 171 -1323 -1323 -1323 74 -58 -88 -28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAAYAW MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 96 E= 2.2e-001 0.260417 0.000000 0.739583 0.000000 0.041667 0.427083 0.000000 0.531250 1.000000 0.000000 0.000000 0.000000 0.927083 0.072917 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.656250 0.000000 0.343750 1.000000 0.000000 0.000000 0.000000 0.510417 0.125000 0.104167 0.260417 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAAYAW MEME-2 regular expression -------------------------------------------------------------------------------- [GA][TC]AAA[CT]A[AT] -------------------------------------------------------------------------------- Time 13.60 secs. ******************************************************************************** ******************************************************************************** MOTIF TTKCCGSC MEME-3 width = 8 sites = 15 llr = 155 E-value = 1.6e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTKCCGSC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 3::aa:3a probability G ::5::a7: matrix T 7a5::::: bits 2.4 *** * 2.2 *** * 1.9 *** * 1.7 * *** * Relative 1.5 * ***** Entropy 1.2 * ***** (14.9 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGCCGGC consensus C T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCCGSC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:15909979-15910099 24 4.55e-06 CTCATCCATA TTGCCGGC TTTTCTAGCC chr3R:15810489-15810609 5 4.55e-06 GCAA TTGCCGGC TGCTAACGAG chr3R:16309369-16309489 7 4.55e-06 ATCAGA TTGCCGGC AGGCCCCGTT chrX:6868323-6868443 62 7.24e-06 GTAGGCGTCG CTGCCGGC GCGCTGCGCC chr2L:6283425-6283545 108 1.92e-05 ACCACGCCCT TTGCCGCC TTCCA chr2R:16150840-16150960 93 1.92e-05 ACGTAATAGT TTGCCGCC GCAGACATTA chr3L:16770007-16770127 64 1.92e-05 ACAGCATTTT TTTCCGGC CGCAAGTCAA chrX:12470711-12470831 10 1.92e-05 TTTGTAAGG TTTCCGGC TGTAGAGTTT chr3R:25123361-25123481 108 1.92e-05 TTCACTTTCG TTTCCGGC GTGGT chr3R:26937632-26937752 65 1.92e-05 AAAACGCACT TTTCCGGC GAATAAAGTG chr3L:11351452-11351572 37 1.92e-05 TATATGATCA TTGCCGCC CTCTGTGGGG chr3L:19349889-19350009 23 2.63e-05 TTTTATTGCT CTTCCGGC GGCGAAGATA chr3L:19132753-19132873 99 2.63e-05 TTCTTGCCAT CTGCCGCC ATTTCCCCGC chr2R:10100402-10100522 33 2.63e-05 CTCGCCTTAA CTTCCGGC CCACAATCGT chr2R:16610076-16610196 101 3.37e-05 ATCGATTGGT TTTCCGCC CAGCCTCTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCCGSC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:15909979-15910099 4.5e-06 23_[+3]_89 chr3R:15810489-15810609 4.5e-06 4_[+3]_108 chr3R:16309369-16309489 4.5e-06 6_[+3]_106 chrX:6868323-6868443 7.2e-06 61_[+3]_51 chr2L:6283425-6283545 1.9e-05 107_[+3]_5 chr2R:16150840-16150960 1.9e-05 92_[+3]_20 chr3L:16770007-16770127 1.9e-05 63_[+3]_49 chrX:12470711-12470831 1.9e-05 9_[+3]_103 chr3R:25123361-25123481 1.9e-05 107_[+3]_5 chr3R:26937632-26937752 1.9e-05 64_[+3]_48 chr3L:11351452-11351572 1.9e-05 36_[+3]_76 chr3L:19349889-19350009 2.6e-05 22_[+3]_90 chr3L:19132753-19132873 2.6e-05 98_[+3]_14 chr2R:10100402-10100522 2.6e-05 32_[+3]_80 chr2R:16610076-16610196 3.4e-05 100_[+3]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCCGSC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTKCCGSC width=8 seqs=15 chr2L:15909979-15910099 ( 24) TTGCCGGC 1 chr3R:15810489-15810609 ( 5) TTGCCGGC 1 chr3R:16309369-16309489 ( 7) TTGCCGGC 1 chrX:6868323-6868443 ( 62) CTGCCGGC 1 chr2L:6283425-6283545 ( 108) TTGCCGCC 1 chr2R:16150840-16150960 ( 93) TTGCCGCC 1 chr3L:16770007-16770127 ( 64) TTTCCGGC 1 chrX:12470711-12470831 ( 10) TTTCCGGC 1 chr3R:25123361-25123481 ( 108) TTTCCGGC 1 chr3R:26937632-26937752 ( 65) TTTCCGGC 1 chr3L:11351452-11351572 ( 37) TTGCCGCC 1 chr3L:19349889-19350009 ( 23) CTTCCGGC 1 chr3L:19132753-19132873 ( 99) CTGCCGCC 1 chr2R:10100402-10100522 ( 33) CTTCCGGC 1 chr2R:16610076-16610196 ( 101) TTTCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCCGSC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 1.6e+001 -1055 51 -1055 122 -1055 -1055 -1055 166 -1055 -1055 148 56 -1055 242 -1055 -1055 -1055 242 -1055 -1055 -1055 -1055 239 -1055 -1055 83 180 -1055 -1055 242 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCCGSC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.6e+001 0.000000 0.266667 0.000000 0.733333 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.533333 0.466667 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCCGSC MEME-3 regular expression -------------------------------------------------------------------------------- [TC]T[GT]CCG[GC]C -------------------------------------------------------------------------------- Time 19.59 secs. ******************************************************************************** ******************************************************************************** MOTIF GGYGGTGG MEME-4 width = 8 sites = 9 llr = 101 E-value = 9.4e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGYGGTGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 1:7::::: probability G 9a:a9:aa matrix T ::3:1a:: bits 2.4 * * ** 2.2 * * ** 1.9 ** * ** 1.7 ** ***** Relative 1.5 ** ***** Entropy 1.2 ******** (16.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCGGTGG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGTGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:8350634-8350754 31 2.87e-06 TAAAAAACGA GGCGGTGG CATACTTTTA chr3L:13236787-13236907 57 2.87e-06 AGGGGCTGGG GGCGGTGG CGGGGGGCCG chr3R:29480072-29480192 3 2.87e-06 GT GGCGGTGG AATTTCTTAT chr3L:19132753-19132873 34 2.87e-06 AGCGCCCCCT GGCGGTGG GAAGCGACAG chr3L:22471745-22471865 74 7.72e-06 tatatatata GGTGGTGG TTAGGTAAAT chr2L:7940803-7940923 78 7.72e-06 AGAGGAAGTG GGTGGTGG GGCGGAAACG chrX:6853419-6853539 84 7.72e-06 GCAATAAAga ggtggtgg aaagggggag chr2L:6668006-6668126 78 1.05e-05 GCTAGTGATG CGCGGTGG TCGATAAGAC chr2L:22144305-22144425 13 1.53e-05 CATATAAATA GGCGTTGG TTTCTAGATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGTGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8350634-8350754 2.9e-06 30_[+4]_82 chr3L:13236787-13236907 2.9e-06 56_[+4]_56 chr3R:29480072-29480192 2.9e-06 2_[+4]_110 chr3L:19132753-19132873 2.9e-06 33_[+4]_79 chr3L:22471745-22471865 7.7e-06 73_[+4]_39 chr2L:7940803-7940923 7.7e-06 77_[+4]_35 chrX:6853419-6853539 7.7e-06 83_[+4]_29 chr2L:6668006-6668126 1.1e-05 77_[+4]_35 chr2L:22144305-22144425 1.5e-05 12_[+4]_100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGTGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGYGGTGG width=8 seqs=9 chr2L:8350634-8350754 ( 31) GGCGGTGG 1 chr3L:13236787-13236907 ( 57) GGCGGTGG 1 chr3R:29480072-29480192 ( 3) GGCGGTGG 1 chr3L:19132753-19132873 ( 34) GGCGGTGG 1 chr3L:22471745-22471865 ( 74) GGTGGTGG 1 chr2L:7940803-7940923 ( 78) GGTGGTGG 1 chrX:6853419-6853539 ( 84) GGTGGTGG 1 chr2L:6668006-6668126 ( 78) CGCGGTGG 1 chr2L:22144305-22144425 ( 13) GGCGTTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGTGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4638 E= 9.4e+002 -982 -75 222 -982 -982 -982 239 -982 -982 183 -982 8 -982 -982 239 -982 -982 -982 222 -150 -982 -982 -982 166 -982 -982 239 -982 -982 -982 239 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGTGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 9.4e+002 0.000000 0.111111 0.888889 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYGGTGG MEME-4 regular expression -------------------------------------------------------------------------------- GG[CT]GGTGG -------------------------------------------------------------------------------- Time 25.50 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCTSCGC MEME-5 width = 8 sites = 8 llr = 88 E-value = 2.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCTSCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a1a:59:a probability G :9::41a: matrix T :::a1::: bits 2.4 * * ** 2.2 * * ** 1.9 *** *** 1.7 **** *** Relative 1.5 **** *** Entropy 1.2 **** *** (15.9 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCTCCGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTSCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14609047-14609167 65 2.64e-06 TTTCCGTATC CGCTCCGC TCTGTTGTTT chr2R:18202752-18202872 92 2.64e-06 TGAATGCGCA CGCTCCGC GTTGATTGAT chr3R:31395343-31395463 10 5.33e-06 ACCTTAATC CGCTGCGC TTTGAGTACA chrX:6868323-6868443 71 5.33e-06 GCTGCCGGCG CGCTGCGC CAGTGTGGGT chrX:6862763-6862883 32 5.33e-06 GACTTGCCTG CGCTGCGC TGCTTGGACG chr3R:9701424-9701544 100 1.51e-05 GACTTTCCAG CGCTTCGC CCCACCCCCA chr3L:628130-628250 34 1.51e-05 ATGCCGACCG CCCTCCGC AGGCCccgtt chrX:7931021-7931141 93 1.51e-05 TTCACTCTCT CGCTCGGC TCTCTTCGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTSCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14609047-14609167 2.6e-06 64_[+5]_48 chr2R:18202752-18202872 2.6e-06 91_[+5]_21 chr3R:31395343-31395463 5.3e-06 9_[+5]_103 chrX:6868323-6868443 5.3e-06 70_[+5]_42 chrX:6862763-6862883 5.3e-06 31_[+5]_81 chr3R:9701424-9701544 1.5e-05 99_[+5]_13 chr3L:628130-628250 1.5e-05 33_[+5]_79 chrX:7931021-7931141 1.5e-05 92_[+5]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTSCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCTSCGC width=8 seqs=8 chr3R:14609047-14609167 ( 65) CGCTCCGC 1 chr2R:18202752-18202872 ( 92) CGCTCCGC 1 chr3R:31395343-31395463 ( 10) CGCTGCGC 1 chrX:6868323-6868443 ( 71) CGCTGCGC 1 chrX:6862763-6862883 ( 32) CGCTGCGC 1 chr3R:9701424-9701544 ( 100) CGCTTCGC 1 chr3L:628130-628250 ( 34) CCCTCCGC 1 chrX:7931021-7931141 ( 93) CGCTCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTSCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.1077 E= 2.8e+003 -965 242 -965 -965 -965 -58 219 -965 -965 242 -965 -965 -965 -965 -965 166 -965 142 97 -133 -965 222 -61 -965 -965 -965 239 -965 -965 242 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTSCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.8e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.375000 0.125000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTSCGC MEME-5 regular expression -------------------------------------------------------------------------------- CGCT[CG]CGC -------------------------------------------------------------------------------- Time 31.42 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6867222-6867342 2.26e-01 120 chrX:6862763-6862883 4.29e-03 31_[+5(5.33e-06)]_81 chrX:6866135-6866255 5.57e-02 18_[+1(6.64e-05)]_94 chr3R:16309369-16309489 3.74e-02 6_[+3(4.55e-06)]_106 chrX:6853419-6853539 2.72e-02 83_[+4(7.72e-06)]_29 chr3R:8840887-8841007 3.74e-01 120 chrX:6868323-6868443 1.46e-05 30_[+5(7.23e-05)]_23_[+3(7.24e-06)]_\ 1_[+5(5.33e-06)]_42 chr2R:13034440-13034560 8.03e-01 120 chr2L:22144305-22144425 1.86e-03 12_[+4(1.53e-05)]_100 chr3L:5630297-5630417 8.08e-01 120 chr3R:29831075-29831195 5.26e-04 14_[+1(6.64e-05)]_59_[+2(6.67e-05)]_\ 31 chr2R:14077564-14077684 3.14e-01 120 chr2L:10249786-10249906 7.57e-02 120 chrX:12947799-12947919 3.50e-02 120 chr3R:8841144-8841264 5.83e-01 120 chr3R:20555915-20556035 2.88e-01 120 chr3L:6216134-6216254 1.68e-01 120 chr3R:6765034-6765154 2.93e-02 33_[+2(7.77e-05)]_79 chr2R:10100402-10100522 9.11e-02 32_[+3(2.63e-05)]_80 chr3R:21825286-21825406 2.23e-01 120 chr2L:12463131-12463251 2.36e-01 [+2(1.79e-05)]_112 chrX:7931021-7931141 1.13e-01 92_[+5(1.51e-05)]_20 chr2R:11206207-11206327 7.84e-03 120 chr3L:19132753-19132873 4.30e-05 33_[+4(2.87e-06)]_57_[+3(2.63e-05)]_\ 14 chr3R:23803808-23803928 2.28e-01 120 chr3L:11351452-11351572 5.01e-02 36_[+3(1.92e-05)]_76 chr3R:5032009-5032129 3.92e-02 120 chr3R:15810489-15810609 2.73e-03 4_[+3(4.55e-06)]_108 chr2L:16790979-16791099 3.58e-03 25_[+4(7.11e-05)]_38_[+5(3.20e-05)]_\ 41 chr3L:19349889-19350009 4.07e-02 22_[+3(2.63e-05)]_90 chrX:6855720-6855840 5.93e-01 120 chr3L:12836456-12836576 4.78e-01 120 chr3R:23284412-23284532 9.01e-04 9_[+2(1.79e-05)]_103 chr3L:1859693-1859813 4.87e-01 120 chrX:16276007-16276127 1.99e-01 120 chr3R:17655173-17655293 1.41e-01 120 chr2R:9309670-9309790 4.40e-02 120 chr3L:18837983-18838103 3.90e-01 120 chr3R:6182658-6182778 9.84e-05 26_[+4(7.11e-05)]_7_[+1(2.04e-05)]_\ 25_[+1(2.04e-05)]_38 chr2R:6464939-6465059 3.76e-02 63_[+2(4.82e-05)]_10_[+2(4.82e-05)]_\ 31 chr3R:22494682-22494802 3.62e-02 99_[+2(1.79e-05)]_13 chr3R:7779743-7779863 6.24e-01 120 chr2R:18202752-18202872 1.75e-03 91_[+5(2.64e-06)]_21 chr3R:14300117-14300237 3.24e-01 120 chr3R:31169096-31169216 7.18e-04 34_[+5(7.23e-05)]_[+1(2.04e-05)]_70 chr3L:20664149-20664269 1.27e-01 58_[+1(6.64e-05)]_54 chr2L:21037843-21037963 2.20e-04 53_[+1(6.64e-05)]_2_[+2(4.82e-05)]_\ 49 chr3L:1868965-1869085 3.28e-01 120 chr3R:14041767-14041887 9.52e-01 120 chrX:18238026-18238146 1.41e-01 120 chr2L:2494662-2494782 2.27e-03 33_[+1(6.64e-05)]_11_[+2(7.77e-05)]_\ 60 chr2L:4838587-4838707 9.50e-02 120 chr2R:12035193-12035313 5.03e-01 120 chr3R:29480072-29480192 1.02e-06 2_[+4(2.87e-06)]_68_[+2(4.82e-05)]_\ 34 chr3L:8689809-8689929 1.38e-03 18_[+3(5.69e-05)]_55_[+2(1.79e-05)]_\ 31 chr3L:11257589-11257709 8.32e-01 120 chr3L:7782357-7782477 2.22e-01 120 chr3L:11345689-11345809 8.32e-03 48_[+2(4.82e-05)]_9_[+1(6.64e-05)]_\ 47 chrX:10582192-10582312 2.31e-01 120 chr2L:3280773-3280893 1.11e-01 120 chrX:6720111-6720231 1.82e-01 120 chr3L:19845603-19845723 3.69e-02 120 chr2R:11792792-11792912 4.59e-03 13_[+2(1.79e-05)]_99 chr3L:10514966-10515086 7.76e-01 120 chr3L:14956422-14956542 1.77e-03 32_[+5(2.04e-05)]_80 chr2L:3570686-3570806 1.27e-02 85_[+1(6.64e-05)]_27 chr2R:14908279-14908399 4.32e-01 120 chr3L:12668184-12668304 1.00e-01 120 chr3R:20276151-20276271 3.85e-01 120 chrX:2061292-2061412 4.80e-02 120 chr3R:11243272-11243392 6.87e-01 120 chr3R:31810310-31810430 9.74e-02 23_[+5(3.20e-05)]_89 chr2R:18398325-18398445 3.82e-02 90_[+2(4.82e-05)]_22 chr3L:19263609-19263729 6.34e-01 120 chr3L:5809200-5809320 1.27e-01 120 chr3L:16051866-16051986 2.21e-02 120 chr3R:26011661-26011781 2.71e-01 120 chrX:1270773-1270893 4.53e-01 120 chr2R:10303733-10303853 4.47e-02 120 chr3R:16069417-16069537 1.23e-01 120 chr3R:16771760-16771880 1.06e-01 120 chr3R:4311102-4311222 9.33e-01 120 chr2R:17848949-17849069 1.07e-02 81_[+4(2.80e-05)]_31 chr2L:12487443-12487563 3.38e-01 120 chr3R:15670660-15670780 1.48e-01 120 chr2L:8276334-8276454 6.33e-01 120 chr3R:16212990-16213110 7.55e-01 120 chr3R:5016440-5016560 1.10e-02 120 chr3L:628130-628250 1.97e-02 33_[+5(1.51e-05)]_79 chr3L:4615213-4615333 5.67e-03 63_[+2(6.67e-05)]_49 chrX:7579955-7580075 1.37e-01 120 chr2R:8327265-8327385 3.87e-03 108_[+1(6.64e-05)]_4 chr2L:12076001-12076121 4.42e-04 103_[+2(1.79e-05)]_9 chr2L:4133207-4133327 9.56e-01 120 chr3L:19216530-19216650 8.24e-01 120 chr2R:11541204-11541324 1.25e-01 31_[+2(1.79e-05)]_40_[+2(1.79e-05)]_\ 33 chr2L:20327543-20327663 1.43e-03 78_[+2(1.79e-05)]_34 chr2L:3323549-3323669 6.25e-02 120 chr2R:22162296-22162416 3.37e-02 120 chr3R:13713611-13713731 7.37e-01 120 chr2R:24593721-24593841 1.59e-03 120 chrX:12925979-12926099 6.58e-02 120 chr3L:15999807-15999927 4.81e-01 120 chr3R:19472403-19472523 1.41e-02 120 chr3R:9701424-9701544 1.98e-03 99_[+5(1.51e-05)]_13 chr3R:28599599-28599719 2.41e-01 120 chr2L:7940803-7940923 1.14e-02 77_[+4(7.72e-06)]_35 chr3R:14670981-14671101 4.97e-01 120 chr3R:23947142-23947262 1.43e-02 120 chr2R:14109843-14109963 8.95e-03 120 chr2L:5096979-5097099 2.55e-01 120 chr3L:13356190-13356310 1.82e-01 120 chr2L:12046764-12046884 7.64e-01 120 chr2L:6047895-6048015 2.17e-01 120 chr3R:4732434-4732554 8.75e-01 120 chr2R:16848446-16848566 2.70e-01 120 chr2L:19377534-19377654 5.55e-01 120 chr3L:15977745-15977865 6.42e-01 120 chrX:16103501-16103621 1.06e-01 94_[+2(6.67e-05)]_18 chr3R:24809717-24809837 6.01e-03 120 chr3L:9509529-9509649 7.17e-03 [+1(2.04e-05)]_112 chr3R:22147602-22147722 1.01e-02 94_[+2(4.82e-05)]_18 chr2R:19357509-19357629 8.69e-03 22_[+1(2.04e-05)]_90 chrX:8677565-8677685 7.14e-01 120 chr2L:484350-484470 9.73e-02 120 chr2L:10552947-10553067 1.33e-01 120 chr2R:18693279-18693399 2.57e-03 109_[+1(6.64e-05)]_3 chr2R:16610076-16610196 3.29e-02 100_[+3(3.37e-05)]_12 chr2R:18609000-18609120 2.46e-03 110_[+2(1.79e-05)]_2 chr3L:20448084-20448204 4.15e-02 120 chr2R:18994152-18994272 8.55e-01 120 chr3R:26130687-26130807 8.11e-03 48_[+2(4.82e-05)]_64 chr3L:824567-824687 4.73e-01 120 chr3R:28570929-28571049 1.78e-01 120 chr3L:11580086-11580206 8.72e-01 120 chr4:226000-226120 5.36e-02 120 chr2R:8615277-8615397 3.24e-05 72_[+1(6.64e-05)]_14_[+2(4.82e-05)]_\ 18 chr2L:12721114-12721234 2.78e-01 120 chr3L:10362845-10362965 1.02e-01 120 chr2R:15034953-15035073 1.38e-01 120 chr2L:15909979-15910099 4.56e-04 23_[+3(4.55e-06)]_5_[+3(6.68e-05)]_\ 76 chr3R:21420009-21420129 8.08e-01 120 chr3R:26937632-26937752 5.23e-02 64_[+3(1.92e-05)]_48 chr3R:4732190-4732310 4.37e-01 120 chr2L:20911567-20911687 2.50e-03 10_[+1(6.64e-05)]_3_[+2(4.82e-05)]_\ 91 chr3L:20516850-20516970 4.67e-01 120 chrX:17582807-17582927 1.43e-01 120 chr3R:25123361-25123481 2.69e-02 107_[+3(1.92e-05)]_5 chr2L:6357085-6357205 5.50e-01 120 chr3L:16768390-16768510 3.62e-01 120 chr3L:6059234-6059354 9.97e-01 120 chr2L:81317-81437 3.47e-01 120 chr3R:24293299-24293419 2.54e-01 120 chr2R:6524843-6524963 2.91e-02 120 chr3L:8629055-8629175 9.75e-01 120 chr3R:23919529-23919649 4.58e-02 120 chr3L:15691318-15691438 8.19e-01 120 chr4:446083-446203 5.79e-01 120 chr2R:7054392-7054512 8.34e-01 120 chr3R:30802938-30803058 1.12e-01 120 chr2L:18822965-18823085 1.65e-02 62_[+2(4.82e-05)]_50 chr2L:11206993-11207113 1.33e-01 120 chr3R:4659941-4660061 2.73e-03 120 chr2R:22886300-22886420 5.10e-01 120 chr2L:10143425-10143545 1.89e-01 120 chr2L:20897116-20897236 8.52e-02 120 chr3L:6157786-6157906 3.10e-01 120 chr2R:10059105-10059225 4.56e-02 61_[+1(6.64e-05)]_51 chr3L:18782213-18782333 9.33e-01 120 chr3L:1035113-1035233 5.78e-01 120 chrX:17330349-17330469 6.49e-01 120 chr3R:10520687-10520807 4.38e-01 120 chr3R:6667396-6667516 4.37e-02 120 chrX:3188553-3188673 3.36e-01 120 chrX:21322632-21322752 4.46e-01 120 chr2L:117853-117973 2.40e-01 120 chrX:20631259-20631379 2.56e-01 120 chr2R:11640890-11641010 3.30e-01 120 chr3R:31395343-31395463 2.45e-02 9_[+5(5.33e-06)]_103 chrX:16854860-16854980 9.98e-01 120 chr3R:19165038-19165158 2.90e-01 120 chr3R:16223707-16223827 2.81e-01 120 chr3R:16006074-16006194 1.44e-02 72_[+2(4.82e-05)]_40 chr3L:8526249-8526369 2.17e-01 120 chr2L:19434423-19434543 2.62e-01 89_[+2(7.77e-05)]_23 chr2R:21282352-21282472 2.74e-01 120 chr2R:13966174-13966294 7.17e-02 120 chr3R:10350835-10350955 9.66e-03 98_[+1(6.64e-05)]_14 chr2R:14577783-14577903 1.18e-02 120 chr3L:19834278-19834398 5.38e-01 120 chr3R:21112607-21112727 3.38e-01 120 chr2L:16544634-16544754 9.18e-01 120 chr2R:9544940-9545060 3.58e-03 111_[+1(6.64e-05)]_1 chr2L:6700810-6700930 1.95e-02 36_[+1(6.64e-05)]_76 chr2L:3003548-3003668 8.01e-01 120 chr2R:19389416-19389536 2.34e-01 120 chrX:12454478-12454598 9.41e-01 120 chr3R:23176828-23176948 7.57e-03 120 chr3L:14555272-14555392 3.51e-01 120 chr2L:18305243-18305363 6.61e-01 120 chrX:13137201-13137321 9.56e-01 120 chr3R:20555150-20555270 9.96e-01 120 chr3L:16061009-16061129 8.95e-01 120 chr3R:23729187-23729307 5.53e-04 40_[+1(2.04e-05)]_8_[+4(7.11e-05)]_\ 56 chr3R:29799550-29799670 2.01e-01 58_[+1(2.04e-05)]_54 chr3R:29772418-29772538 9.41e-01 120 chr3R:22589555-22589675 1.50e-02 120 chr3L:21130986-21131106 1.42e-01 120 chrX:22837526-22837646 1.17e-02 120 chrX:9652119-9652239 7.99e-01 120 chr2R:9006882-9007002 3.69e-02 120 chr3L:22471745-22471865 6.12e-03 73_[+4(7.72e-06)]_39 chr2L:20807748-20807868 8.17e-03 60_[+2(7.77e-05)]_52 chr3L:20194890-20195010 3.54e-01 120 chr3R:5015341-5015461 1.64e-01 120 chr2R:21018389-21018509 9.65e-01 120 chr2R:18834915-18835035 6.37e-01 120 chr2R:21049405-21049525 5.71e-03 46_[+2(6.67e-05)]_66 chr3R:15472848-15472968 8.00e-01 120 chr3L:14195870-14195990 2.68e-01 120 chrX:12470711-12470831 6.46e-02 9_[+3(1.92e-05)]_103 chr3R:27153631-27153751 7.38e-01 120 chr3R:5861532-5861652 8.58e-01 120 chr2R:9881467-9881587 1.92e-01 41_[+1(6.64e-05)]_71 chr2R:21017490-21017610 9.17e-01 120 chrX:17176698-17176818 6.21e-01 120 chr3L:16770007-16770127 2.28e-02 63_[+3(1.92e-05)]_49 chr3R:14609047-14609167 5.67e-03 64_[+5(2.64e-06)]_48 chr2L:7813480-7813600 6.70e-02 120 chr3L:8024940-8025060 6.45e-01 120 chr2L:6830424-6830544 6.93e-01 120 chr3R:11368841-11368961 8.51e-01 120 chr2L:6668006-6668126 5.55e-05 77_[+4(1.05e-05)]_35 chr3R:21350131-21350251 2.30e-02 120 chr2L:11528273-11528393 3.26e-01 120 chr3R:20834995-20835115 2.95e-01 120 chr3R:26444287-26444407 8.71e-01 120 chr3L:10206338-10206458 4.70e-01 120 chr2L:10698154-10698274 7.21e-01 120 chr3L:13236787-13236907 1.84e-04 32_[+2(1.79e-05)]_16_[+4(2.87e-06)]_\ 56 chr2R:16150840-16150960 1.96e-03 92_[+3(1.92e-05)]_20 chr3R:20542386-20542506 1.38e-01 69_[+1(6.64e-05)]_43 chr2L:6283425-6283545 1.13e-03 107_[+3(1.92e-05)]_5 chr2L:6479291-6479411 8.98e-02 120 chr2L:8350634-8350754 1.53e-03 5_[+2(6.67e-05)]_17_[+4(2.87e-06)]_\ 82 chr3L:12271396-12271516 7.55e-01 120 chr3R:21373544-21373664 6.65e-02 120 chr2L:20759999-20760119 3.90e-01 120 chr3R:21204000-21204120 2.89e-01 120 chr3L:12526982-12527102 1.31e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************