******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12299.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:6245431-6245551 1.0000 120 chr3R:30563207-30563327 1.0000 120 chr2L:16548418-16548538 1.0000 120 chr3R:25882130-25882250 1.0000 120 chr3L:17625152-17625272 1.0000 120 chrX:6366143-6366263 1.0000 120 chrX:16334566-16334686 1.0000 120 chr3L:7339576-7339696 1.0000 120 chr2L:1704906-1705026 1.0000 120 chrX:7706439-7706559 1.0000 120 chr2R:25012052-25012172 1.0000 120 chr3L:13903440-13903560 1.0000 120 chr2R:21312499-21312619 1.0000 120 chrX:18082852-18082972 1.0000 120 chr3R:24320342-24320462 1.0000 120 chr3R:21140580-21140700 1.0000 120 chr3R:24104986-24105106 1.0000 120 chr3L:9424608-9424728 1.0000 120 chr3R:16476568-16476688 1.0000 120 chr2R:13909065-13909185 1.0000 120 chr2L:19134823-19134943 1.0000 120 chr2R:12871697-12871817 1.0000 120 chr2R:13560719-13560839 1.0000 120 chrX:2012299-2012419 1.0000 120 chr4:695980-696100 1.0000 120 chr4:834745-834865 1.0000 120 chr3L:18820522-18820642 1.0000 120 chr2R:11198203-11198323 1.0000 120 chr2L:8938131-8938251 1.0000 120 chr3R:8980815-8980935 1.0000 120 chr3L:12773431-12773551 1.0000 120 chr2L:16530945-16531065 1.0000 120 chr3R:16655326-16655446 1.0000 120 chr2R:13723370-13723490 1.0000 120 chrX:17301683-17301803 1.0000 120 chr2R:14698970-14699090 1.0000 120 chr2R:8614630-8614750 1.0000 120 chr3R:25074563-25074683 1.0000 120 chr2L:9495511-9495631 1.0000 120 chr3R:31127566-31127686 1.0000 120 chr3R:7075093-7075213 1.0000 120 chr3L:11450645-11450765 1.0000 120 chr3L:124030-124150 1.0000 120 chr3L:548989-549109 1.0000 120 chr3L:7125374-7125494 1.0000 120 chrX:6853532-6853652 1.0000 120 chr2R:19141676-19141796 1.0000 120 chr3L:15923487-15923607 1.0000 120 chr2R:19395972-19396092 1.0000 120 chr2R:9284040-9284160 1.0000 120 chr3L:9692393-9692513 1.0000 120 chr4:466708-466828 1.0000 120 chrX:13681820-13681940 1.0000 120 chr2R:10195035-10195155 1.0000 120 chr2R:8051553-8051673 1.0000 120 chr3R:20317919-20318039 1.0000 120 chr2L:5270828-5270948 1.0000 120 chr3L:22276720-22276840 1.0000 120 chr2L:10277535-10277655 1.0000 120 chr2R:16150119-16150239 1.0000 120 chr3L:16494852-16494972 1.0000 120 chr3L:6352382-6352502 1.0000 120 chr3R:11243185-11243305 1.0000 120 chr2R:9543730-9543850 1.0000 120 chr3L:22888999-22889119 1.0000 120 chr2L:13203367-13203487 1.0000 120 chr2L:18119785-18119905 1.0000 120 chr3L:15530813-15530933 1.0000 120 chr3L:19294810-19294930 1.0000 120 chrX:635923-636043 1.0000 120 chr2R:25253321-25253441 1.0000 120 chr3L:7782369-7782489 1.0000 120 chr4:1146477-1146597 1.0000 120 chrX:14213662-14213782 1.0000 120 chrX:11325354-11325474 1.0000 120 chr3R:7108110-7108230 1.0000 120 chr3L:7156901-7157021 1.0000 120 chr4:1053900-1054020 1.0000 120 chr2R:16159161-16159281 1.0000 120 chr2R:12670077-12670197 1.0000 120 chr3R:29480081-29480201 1.0000 120 chr2R:7729997-7730117 1.0000 120 chr2R:21417224-21417344 1.0000 120 chr2L:14501683-14501803 1.0000 120 chr3R:9581175-9581295 1.0000 120 chr3R:31777811-31777931 1.0000 120 chr2R:17548783-17548903 1.0000 120 chr3L:8058423-8058543 1.0000 120 chr3R:5746786-5746906 1.0000 120 chr3R:18785932-18786052 1.0000 120 chr3R:24589245-24589365 1.0000 120 chr2R:18141294-18141414 1.0000 120 chr3R:23284391-23284511 1.0000 120 chr3L:1576661-1576781 1.0000 120 chrX:9156564-9156684 1.0000 120 chr2L:452801-452921 1.0000 120 chr3L:12802711-12802831 1.0000 120 chr2L:3373293-3373413 1.0000 120 chr2R:19141896-19142016 1.0000 120 chr4:1060696-1060816 1.0000 120 chrX:3719513-3719633 1.0000 120 chr2R:17020209-17020329 1.0000 120 chr2L:13203964-13204084 1.0000 120 chr2R:24745997-24746117 1.0000 120 chrX:15853153-15853273 1.0000 120 chrX:10786107-10786227 1.0000 120 chr2L:8083617-8083737 1.0000 120 chr2L:7182032-7182152 1.0000 120 chr2L:10396998-10397118 1.0000 120 chr2R:17085693-17085813 1.0000 120 chr2R:24022213-24022333 1.0000 120 chr3R:15933849-15933969 1.0000 120 chr3R:19153542-19153662 1.0000 120 chr3R:15804138-15804258 1.0000 120 chr2R:14769364-14769484 1.0000 120 chr2L:14011847-14011967 1.0000 120 chr2L:10333691-10333811 1.0000 120 chr3L:15814141-15814261 1.0000 120 chr2L:14616065-14616185 1.0000 120 chrX:14727682-14727802 1.0000 120 chr3R:12630476-12630596 1.0000 120 chr4:1199333-1199453 1.0000 120 chrX:8493629-8493749 1.0000 120 chr3R:10521334-10521454 1.0000 120 chr3R:9759474-9759594 1.0000 120 chr3L:7866785-7866905 1.0000 120 chr2L:7434856-7434976 1.0000 120 chr3L:19088090-19088210 1.0000 120 chr3L:16164526-16164646 1.0000 120 chr3L:1568485-1568605 1.0000 120 chr2R:25084250-25084370 1.0000 120 chr3L:17791606-17791726 1.0000 120 chrX:16930487-16930607 1.0000 120 chr3R:20556855-20556975 1.0000 120 chr2L:10260802-10260922 1.0000 120 chr3R:19182988-19183108 1.0000 120 chr2R:5782749-5782869 1.0000 120 chr2R:7745288-7745408 1.0000 120 chr3L:11580072-11580192 1.0000 120 chr3L:1534197-1534317 1.0000 120 chr3L:18786217-18786337 1.0000 120 chr3L:1730973-1731093 1.0000 120 chr3R:25881288-25881408 1.0000 120 chr2R:10123766-10123886 1.0000 120 chr3L:17310601-17310721 1.0000 120 chr2L:14234510-14234630 1.0000 120 chrX:13626037-13626157 1.0000 120 chr3R:31810313-31810433 1.0000 120 chr2L:108050-108170 1.0000 120 chr3L:8449930-8450050 1.0000 120 chrX:11454192-11454312 1.0000 120 chr2R:10541379-10541499 1.0000 120 chr3L:15955046-15955166 1.0000 120 chrX:8141978-8142098 1.0000 120 chr3R:22494636-22494756 1.0000 120 chr2R:8127454-8127574 1.0000 120 chrX:12547785-12547905 1.0000 120 chrX:8145580-8145700 1.0000 120 chr3R:13660398-13660518 1.0000 120 chrX:17149013-17149133 1.0000 120 chr3L:3787742-3787862 1.0000 120 chr2R:18397629-18397749 1.0000 120 chr3R:17605217-17605337 1.0000 120 chr2R:6575008-6575128 1.0000 120 chr3L:20406345-20406465 1.0000 120 chr2R:18351920-18352040 1.0000 120 chr3L:1602652-1602772 1.0000 120 chr3L:22872164-22872284 1.0000 120 chr2L:7492053-7492173 1.0000 120 chr2R:7805683-7805803 1.0000 120 chr2R:6668827-6668947 1.0000 120 chr3L:6216105-6216225 1.0000 120 chr3R:20555878-20555998 1.0000 120 chr3L:19910136-19910256 1.0000 120 chr3L:20518239-20518359 1.0000 120 chr2R:10886726-10886846 1.0000 120 chr3R:10688975-10689095 1.0000 120 chr3L:4102616-4102736 1.0000 120 chr2L:1207618-1207738 1.0000 120 chrX:16580121-16580241 1.0000 120 chr3L:17740501-17740621 1.0000 120 chr3L:20520942-20521062 1.0000 120 chr2R:15922027-15922147 1.0000 120 chr3L:3059441-3059561 1.0000 120 chr2L:2168327-2168447 1.0000 120 chr3R:9220722-9220842 1.0000 120 chr3L:15034510-15034630 1.0000 120 chr2R:24943271-24943391 1.0000 120 chr2L:19791820-19791940 1.0000 120 chr3L:19847091-19847211 1.0000 120 chr3R:11581598-11581718 1.0000 120 chr3R:31771839-31771959 1.0000 120 chr2R:17469398-17469518 1.0000 120 chr2L:10249788-10249908 1.0000 120 chr3L:17530001-17530121 1.0000 120 chr2L:10760763-10760883 1.0000 120 chr2L:10967922-10968042 1.0000 120 chr3R:6368748-6368868 1.0000 120 chr3L:160714-160834 1.0000 120 chr3R:5564865-5564985 1.0000 120 chr3L:18837981-18838101 1.0000 120 chr3R:14659492-14659612 1.0000 120 chr2L:8364690-8364810 1.0000 120 chr3R:21377332-21377452 1.0000 120 chr2L:10756205-10756325 1.0000 120 chr2R:15322480-15322600 1.0000 120 chrX:6678153-6678273 1.0000 120 chr3L:15549093-15549213 1.0000 120 chr3R:11235072-11235192 1.0000 120 chr2L:156038-156158 1.0000 120 chr2R:21709631-21709751 1.0000 120 chr2R:18172007-18172127 1.0000 120 chr2R:22641394-22641514 1.0000 120 chrX:16655814-16655934 1.0000 120 chr3L:21065348-21065468 1.0000 120 chrX:10366066-10366186 1.0000 120 chr3R:23725874-23725994 1.0000 120 chr3R:11628482-11628602 1.0000 120 chr3R:19326311-19326431 1.0000 120 chr2R:16150321-16150441 1.0000 120 chr2R:10439015-10439135 1.0000 120 chr2R:10429704-10429824 1.0000 120 chr3R:22464607-22464727 1.0000 120 chr3L:13356136-13356256 1.0000 120 chr2L:5196869-5196989 1.0000 120 chr3L:3395498-3395618 1.0000 120 chrX:7291073-7291193 1.0000 120 chr3R:26536252-26536372 1.0000 120 chr3R:23931518-23931638 1.0000 120 chrX:9135269-9135389 1.0000 120 chr3R:25275504-25275624 1.0000 120 chr3R:4821296-4821416 1.0000 120 chrX:17582799-17582919 1.0000 120 chr2L:404135-404255 1.0000 120 chr2R:13494694-13494814 1.0000 120 chr2L:16819841-16819961 1.0000 120 chr3L:4134366-4134486 1.0000 120 chrX:19498212-19498332 1.0000 120 chr3R:6406846-6406966 1.0000 120 chr2R:8122931-8123051 1.0000 120 chr3R:8362540-8362660 1.0000 120 chr3R:4659941-4660061 1.0000 120 chrX:13757046-13757166 1.0000 120 chr3R:27137884-27138004 1.0000 120 chr2L:6455168-6455288 1.0000 120 chr3L:11351450-11351570 1.0000 120 chr3L:17047903-17048023 1.0000 120 chr3R:24031701-24031821 1.0000 120 chr2L:20676036-20676156 1.0000 120 chr2L:1094799-1094919 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG12299/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12299.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.318 C 0.184 G 0.185 T 0.313 Background letter frequencies (from file dataset with add-one prior applied): A 0.318 C 0.184 G 0.185 T 0.313 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCSSCDGC MEME-1 width = 8 sites = 24 llr = 219 E-value = 2.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCSSCDGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::3:: pos.-specific C a936a:3a probability G :154:37: matrix T ::2::41: bits 2.4 * * * 2.2 * * * 2.0 ** * * 1.7 ** * * Relative 1.5 ** ** * Entropy 1.2 ** ** ** (13.2 bits) 1.0 ***** ** 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCTGC consensus CG GC sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSSCDGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:1602652-1602772 7 1.34e-06 GTGTGA CCGCCGGC GGGTATGTGC chr2R:7745288-7745408 26 3.59e-06 GTCGACGCCG CCGCCTGC TCTGAAAAAA chr3R:15933849-15933969 36 3.59e-06 CTGCTTTTCG CCGCCTGC TCGTTAGTAA chr2R:18141294-18141414 98 3.59e-06 TTCTATTTCA CCGCCTGC CTGGTCGAAT chr2R:21709631-21709751 27 4.94e-06 TGCTTTTCTT CCGGCGGC ACAGTGAACG chr3L:1576661-1576781 2 1.08e-05 T CCGGCTGC GGCCACACTG chr2L:108050-108170 2 2.48e-05 A CCGCCTCC TCCGTTTGCG chr3L:7339576-7339696 27 2.48e-05 GCAGCCAAAG CCCGCTGC CGATCAGGTA chr2R:13723370-13723490 108 2.75e-05 TTCGAGTGTG CCCCCGCC ACCCG chr2R:12670077-12670197 5 2.98e-05 CCCT CCTCCGGC GGAGATGAAG chr2L:10967922-10968042 23 3.66e-05 CCATCTCTTT CCCGCAGC GACGTCGCGT chr2R:7805683-7805803 36 3.66e-05 GGATTCTGCC CCCGCAGC CCCTGCGCTC chr3L:22872164-22872284 2 3.66e-05 T CCGCCACC TCGGCTAGAG chr2L:1094799-1094919 85 3.88e-05 ACTGTTTGCC CCCCCTCC TCCCCCCTCC chr2L:2168327-2168447 98 3.88e-05 AACAAATATG CCCCCTCC GCAGATAAGA chr2R:9284040-9284160 89 4.76e-05 CATTTGATTT CCTGCGGC CGAAAAAGCA chr2R:18351920-18352040 61 5.67e-05 TAGTTTTTTC CCCCCACC CCGCAATATT chr3R:4821296-4821416 50 6.58e-05 TTTTGCAGGA CGGGCGGC AGTGGATTAT chr2R:8614630-8614750 38 6.58e-05 CTGGCAACAC CCTCCAGC TTCAACCAGA chr2R:11198203-11198323 12 6.58e-05 agcgtcgctg cctgctgc gctgcccgcg chr3R:24104986-24105106 21 6.58e-05 GCTCGTGTTG CGGGCGGC GGCAGAGACG chr3R:8980815-8980935 57 6.93e-05 AAATGCTCCA CCGCCGTC AACAGAGCTC chr3R:20317919-20318039 96 7.62e-05 AGTCGGCGAG CGGCCAGC GGACGAGCGG chr2L:13203964-13204084 110 8.85e-05 CGTCGAGTTT CCGCCTTC AAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSSCDGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1602652-1602772 1.3e-06 6_[+1]_106 chr2R:7745288-7745408 3.6e-06 25_[+1]_87 chr3R:15933849-15933969 3.6e-06 35_[+1]_77 chr2R:18141294-18141414 3.6e-06 97_[+1]_15 chr2R:21709631-21709751 4.9e-06 26_[+1]_86 chr3L:1576661-1576781 1.1e-05 1_[+1]_111 chr2L:108050-108170 2.5e-05 1_[+1]_111 chr3L:7339576-7339696 2.5e-05 26_[+1]_86 chr2R:13723370-13723490 2.7e-05 107_[+1]_5 chr2R:12670077-12670197 3e-05 4_[+1]_108 chr2L:10967922-10968042 3.7e-05 22_[+1]_90 chr2R:7805683-7805803 3.7e-05 35_[+1]_77 chr3L:22872164-22872284 3.7e-05 1_[+1]_111 chr2L:1094799-1094919 3.9e-05 84_[+1]_28 chr2L:2168327-2168447 3.9e-05 97_[+1]_15 chr2R:9284040-9284160 4.8e-05 88_[+1]_24 chr2R:18351920-18352040 5.7e-05 60_[+1]_52 chr3R:4821296-4821416 6.6e-05 49_[+1]_63 chr2R:8614630-8614750 6.6e-05 37_[+1]_75 chr2R:11198203-11198323 6.6e-05 11_[+1]_101 chr3R:24104986-24105106 6.6e-05 20_[+1]_92 chr3R:8980815-8980935 6.9e-05 56_[+1]_56 chr3R:20317919-20318039 7.6e-05 95_[+1]_17 chr2L:13203964-13204084 8.8e-05 109_[+1]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSSCDGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCSSCDGC width=8 seqs=24 chr3L:1602652-1602772 ( 7) CCGCCGGC 1 chr2R:7745288-7745408 ( 26) CCGCCTGC 1 chr3R:15933849-15933969 ( 36) CCGCCTGC 1 chr2R:18141294-18141414 ( 98) CCGCCTGC 1 chr2R:21709631-21709751 ( 27) CCGGCGGC 1 chr3L:1576661-1576781 ( 2) CCGGCTGC 1 chr2L:108050-108170 ( 2) CCGCCTCC 1 chr3L:7339576-7339696 ( 27) CCCGCTGC 1 chr2R:13723370-13723490 ( 108) CCCCCGCC 1 chr2R:12670077-12670197 ( 5) CCTCCGGC 1 chr2L:10967922-10968042 ( 23) CCCGCAGC 1 chr2R:7805683-7805803 ( 36) CCCGCAGC 1 chr3L:22872164-22872284 ( 2) CCGCCACC 1 chr2L:1094799-1094919 ( 85) CCCCCTCC 1 chr2L:2168327-2168447 ( 98) CCCCCTCC 1 chr2R:9284040-9284160 ( 89) CCTGCGGC 1 chr2R:18351920-18352040 ( 61) CCCCCACC 1 chr3R:4821296-4821416 ( 50) CGGGCGGC 1 chr2R:8614630-8614750 ( 38) CCTCCAGC 1 chr2R:11198203-11198323 ( 12) CCTGCTGC 1 chr3R:24104986-24105106 ( 21) CGGGCGGC 1 chr3R:8980815-8980935 ( 57) CCGCCGTC 1 chr3R:20317919-20318039 ( 96) CGGCCAGC 1 chr2L:13203964-13204084 ( 110) CCGCCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSSCDGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 2.9e+002 -1123 244 -1123 -1123 -1123 225 -57 -1123 -1123 67 155 -91 -1123 177 102 -1123 -1123 244 -1123 -1123 -35 -1123 85 41 -1123 44 185 -191 -1123 244 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSSCDGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.9e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.291667 0.541667 0.166667 0.000000 0.625000 0.375000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.333333 0.416667 0.000000 0.250000 0.666667 0.083333 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSSCDGC MEME-1 regular expression -------------------------------------------------------------------------------- CC[GC][CG]C[TGA][GC]C -------------------------------------------------------------------------------- Time 7.49 secs. ******************************************************************************** ******************************************************************************** MOTIF CAYACAYA MEME-2 width = 8 sites = 34 llr = 300 E-value = 4.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAYACAYA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a:a:a2a pos.-specific C a:6:a:5: probability G ::1::::: matrix T ::4:::4: bits 2.4 * * 2.2 * * 2.0 * * 1.7 ** ** * Relative 1.5 ** *** * Entropy 1.2 ** *** * (12.7 bits) 1.0 ****** * 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYACAYA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6455168-6455288 5 1.17e-05 cacg cacacaca cgcacacgta chrX:16655814-16655934 4 1.17e-05 ACG CACACACA AAACGCACCC chr3L:19910136-19910256 18 1.17e-05 AATAATTAAG CACACACA GACACGACGA chr2R:7805683-7805803 55 1.17e-05 CCTGCGCTCA CACACACA TTATGCGATT chrX:8141978-8142098 36 1.17e-05 gcaaggagca cacacaca gttaaacgag chr2R:10541379-10541499 85 1.17e-05 taCTAATACA CACACACA CGATAACGCG chr2L:8083617-8083737 94 1.17e-05 CTCTCTCTca cacacaca cactcgcaca chr3R:31777811-31777931 83 1.17e-05 AACTCAAACG CACACACA AAAAGAGAGG chr3R:9581175-9581295 40 1.17e-05 TAATTTTTGA CACACACA TTTTTCCAAG chr2R:16159161-16159281 59 1.17e-05 ATTTATTATG CACACACA CCACGGAAAG chr3L:6216105-6216225 44 3.17e-05 TACGAAGGTC CACACATA TACAAAGATA chr3L:19088090-19088210 72 3.17e-05 AAAGTGTAAA CACACATA TTACCATTAA chr2L:5270828-5270948 41 3.17e-05 ACAAAACTAC CACACATA GATTCCAATT chr2R:21312499-21312619 53 3.17e-05 TTAAAATATG CACACATA GCGACTACAA chr2L:10249788-10249908 63 5.16e-05 TAAATATGTA CATACACA CGATTTGTAT chr2R:9543730-9543850 109 5.16e-05 tacaGATGTA CATACACA TACG chrX:17301683-17301803 32 5.16e-05 ACTTTTCACC CATACACA CTCGTTGCTG chrX:6678153-6678273 9 7.19e-05 GCGGATGG CACACAAA CGATAGGATA chr2R:10123766-10123886 104 7.19e-05 GAAGAACGCC CACACAAA AAGGCAATG chr3L:16164526-16164646 85 7.19e-05 ACAAGCACGA CACACAAA CATTATCCAT chr3L:8058423-8058543 42 7.19e-05 ACTCACCTGT CACACAAA GTCTCCTTTT chr2R:16150321-16150441 62 1.06e-04 AAGAAAACAA CATACATA TGCTTGTGGC chr3R:23725874-23725994 62 1.06e-04 GTACATTCTT CATACATA CATCTACATG chr3L:19847091-19847211 24 1.06e-04 GTATTATGCA CATACATA CATTGGCTTG chr3R:19182988-19183108 36 1.06e-04 GATatacata catacata cgtacatGTT chrX:16930487-16930607 21 1.06e-04 TTGGCATATA CATACATA TCGCAAATAT chr2R:19395972-19396092 86 1.06e-04 CGCGTACAAG CATACATA TTTTTGGAAT chr2L:9495511-9495631 102 1.06e-04 GAAAACTAAT CATACATA ATCATACATT chr3R:23284391-23284511 74 1.18e-04 GCGAAGCAGA CAGACACA GTCCCATATG chr2R:18141294-18141414 32 1.18e-04 TGTTGCCACC cagacaca cagacagaga chr2R:10439015-10439135 99 1.52e-04 TTAACTATTA CATACAAA TTAATATACA chrX:7706439-7706559 103 1.52e-04 ATATTTAATA CATACAAA TCTAAAAATT chr3R:5746786-5746906 26 1.72e-04 AAATACACAA CAGACATA GCTACACTAC chr3R:13660398-13660518 101 1.79e-04 AAATGTACAG CACGCACA ATGAGAATGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYACAYA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6455168-6455288 1.2e-05 4_[+2]_108 chrX:16655814-16655934 1.2e-05 3_[+2]_109 chr3L:19910136-19910256 1.2e-05 17_[+2]_95 chr2R:7805683-7805803 1.2e-05 54_[+2]_58 chrX:8141978-8142098 1.2e-05 35_[+2]_77 chr2R:10541379-10541499 1.2e-05 84_[+2]_28 chr2L:8083617-8083737 1.2e-05 93_[+2]_19 chr3R:31777811-31777931 1.2e-05 82_[+2]_30 chr3R:9581175-9581295 1.2e-05 39_[+2]_73 chr2R:16159161-16159281 1.2e-05 58_[+2]_54 chr3L:6216105-6216225 3.2e-05 43_[+2]_69 chr3L:19088090-19088210 3.2e-05 71_[+2]_41 chr2L:5270828-5270948 3.2e-05 40_[+2]_72 chr2R:21312499-21312619 3.2e-05 52_[+2]_60 chr2L:10249788-10249908 5.2e-05 62_[+2]_50 chr2R:9543730-9543850 5.2e-05 108_[+2]_4 chrX:17301683-17301803 5.2e-05 31_[+2]_81 chrX:6678153-6678273 7.2e-05 8_[+2]_104 chr2R:10123766-10123886 7.2e-05 103_[+2]_9 chr3L:16164526-16164646 7.2e-05 84_[+2]_28 chr3L:8058423-8058543 7.2e-05 41_[+2]_71 chr2R:16150321-16150441 0.00011 61_[+2]_51 chr3R:23725874-23725994 0.00011 61_[+2]_51 chr3L:19847091-19847211 0.00011 23_[+2]_89 chr3R:19182988-19183108 0.00011 35_[+2]_77 chrX:16930487-16930607 0.00011 20_[+2]_92 chr2R:19395972-19396092 0.00011 85_[+2]_27 chr2L:9495511-9495631 0.00011 101_[+2]_11 chr3R:23284391-23284511 0.00012 73_[+2]_39 chr2R:18141294-18141414 0.00012 31_[+2]_81 chr2R:10439015-10439135 0.00015 98_[+2]_14 chrX:7706439-7706559 0.00015 102_[+2]_10 chr3R:5746786-5746906 0.00017 25_[+2]_87 chr3R:13660398-13660518 0.00018 100_[+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYACAYA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAYACAYA width=8 seqs=34 chr2L:6455168-6455288 ( 5) CACACACA 1 chrX:16655814-16655934 ( 4) CACACACA 1 chr3L:19910136-19910256 ( 18) CACACACA 1 chr2R:7805683-7805803 ( 55) CACACACA 1 chrX:8141978-8142098 ( 36) CACACACA 1 chr2R:10541379-10541499 ( 85) CACACACA 1 chr2L:8083617-8083737 ( 94) CACACACA 1 chr3R:31777811-31777931 ( 83) CACACACA 1 chr3R:9581175-9581295 ( 40) CACACACA 1 chr2R:16159161-16159281 ( 59) CACACACA 1 chr3L:6216105-6216225 ( 44) CACACATA 1 chr3L:19088090-19088210 ( 72) CACACATA 1 chr2L:5270828-5270948 ( 41) CACACATA 1 chr2R:21312499-21312619 ( 53) CACACATA 1 chr2L:10249788-10249908 ( 63) CATACACA 1 chr2R:9543730-9543850 ( 109) CATACACA 1 chrX:17301683-17301803 ( 32) CATACACA 1 chrX:6678153-6678273 ( 9) CACACAAA 1 chr2R:10123766-10123886 ( 104) CACACAAA 1 chr3L:16164526-16164646 ( 85) CACACAAA 1 chr3L:8058423-8058543 ( 42) CACACAAA 1 chr2R:16150321-16150441 ( 62) CATACATA 1 chr3R:23725874-23725994 ( 62) CATACATA 1 chr3L:19847091-19847211 ( 24) CATACATA 1 chr3R:19182988-19183108 ( 36) CATACATA 1 chrX:16930487-16930607 ( 21) CATACATA 1 chr2R:19395972-19396092 ( 86) CATACATA 1 chr2L:9495511-9495631 ( 102) CATACATA 1 chr3R:23284391-23284511 ( 74) CAGACACA 1 chr2R:18141294-18141414 ( 32) CAGACACA 1 chr2R:10439015-10439135 ( 99) CATACAAA 1 chrX:7706439-7706559 ( 103) CATACAAA 1 chr3R:5746786-5746906 ( 26) CAGACATA 1 chr3R:13660398-13660518 ( 101) CACGCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYACAYA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0628 E= 4.0e-002 -1173 244 -1173 -1173 165 -1173 -1173 -1173 -1173 161 -107 17 161 -1173 -265 -1173 -1173 244 -1173 -1173 165 -1173 -1173 -1173 -85 136 -1173 17 165 -1173 -1173 -1173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYACAYA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 4.0e-002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.558824 0.088235 0.352941 0.970588 0.000000 0.029412 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.176471 0.470588 0.000000 0.352941 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAYACAYA MEME-2 regular expression -------------------------------------------------------------------------------- CA[CT]ACA[CT]A -------------------------------------------------------------------------------- Time 13.80 secs. ******************************************************************************** ******************************************************************************** MOTIF YGTKTGYG MEME-3 width = 8 sites = 30 llr = 271 E-value = 3.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGTKTGYG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 5:2:1:5: probability G :a:6:a:a matrix T 5:849:5: bits 2.4 * * * 2.2 * * * 2.0 * * * 1.7 * * * Relative 1.5 * * * Entropy 1.2 ***** * (13.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGTGTGCG consensus T CT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTKTGYG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:7866785-7866905 58 3.89e-06 TCTAATTTTG CGTGTGCG TACATAAGCT chr3L:12773431-12773551 56 3.89e-06 GGATTCCGAT CGTGTGCG TGTATGAAAC chr3R:6406846-6406966 76 1.71e-05 TCGTCGCGCG Cgtgtgtg tgtggtgtat chr2R:16150321-16150441 6 1.71e-05 GATAG CGTGTGTG AACATAAAAT chr3L:18786217-18786337 111 1.71e-05 CGCACTAATG TGTGTGCG TG chr3R:19182988-19183108 101 1.71e-05 TTTGTTTGGC TGTGTGCG AAGTTGGCTT chr2L:14616065-14616185 27 1.71e-05 AAAAACAAAC CGTGTGTG CCGAAAAATA chrX:11325354-11325474 62 1.71e-05 TTGGGAGACG CGTGTGTG TGTTTTGCGT chr3R:20317919-20318039 43 1.71e-05 GTTGGTGCTT TGTGTGCG CGCGTTGCGA chr3R:7075093-7075213 23 1.71e-05 GCGCtgtctg tgtgtgcg tgcgtttgtg chr2L:16530945-16531065 71 1.71e-05 GTGTTTTATC CGTGTGTG TTTTTTTTTT chr4:1146477-1146597 93 1.94e-05 CCTAAGATCA CGCGTGCG CGTGTTCAAA chr2L:108050-108170 12 2.60e-05 CCGCCTCCTC CGTTTGCG ACGATAAGCA chr2L:20676036-20676156 71 3.72e-05 TTAATACAAT TGTGTGTG TACGTAATAA chrX:7291073-7291193 1 3.72e-05 . tgtgtgtg tttttatatg chr2R:19141896-19142016 4 3.72e-05 GTA TGTGTGTG CTGGTGTACT chrX:6853532-6853652 97 3.72e-05 tgactgagtg tgtgtgtg tgAGCAGAGT chr2R:15922027-15922147 79 4.50e-05 TTGAAAGTGA TGCGTGCG TCTGACCGCT chr3R:25881288-25881408 16 6.96e-05 TTTGAGCCAC TGTTTGCG CGATTGGCCG chr2R:16150119-16150239 39 6.96e-05 GCGGTTCGTT CGTGCGCG TCGCTGCTGC chr3L:548989-549109 93 6.96e-05 TTTCAGTTGT TGTTTGCG CTCCCCATTC chrX:2012299-2012419 29 6.96e-05 CTTCGCACCG TGTTTGCG TTCACAACTC chr3L:1568485-1568605 107 7.35e-05 GTAATTCCTA CGCTTGCG AGGGTT chr3L:3395498-3395618 94 1.07e-04 TGTTGGTGCG TGTTTGTG GAAATCAAGT chr3R:24589245-24589365 99 1.07e-04 TATTGGCGAT TGTTTGTG ATTGTGCCAA chr3R:30563207-30563327 60 1.07e-04 GGCTGCAAAT TGTTTGTG CGATCCGAGC chr3R:4821296-4821416 11 1.21e-04 TTCTCTTATC CGCTTGTG TATCAGTTCG chr3L:12802711-12802831 43 1.21e-04 GAGATAAACA CGCTTGTG GTGTGTAGGT chr3R:19153542-19153662 111 1.25e-04 GTTTTACGTG CGTTCGCG AC chr2L:9495511-9495631 73 1.48e-04 GTCGGATTTT CGCGCGTG CAGCGAGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTKTGYG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:7866785-7866905 3.9e-06 57_[+3]_55 chr3L:12773431-12773551 3.9e-06 55_[+3]_57 chr3R:6406846-6406966 1.7e-05 75_[+3]_37 chr2R:16150321-16150441 1.7e-05 5_[+3]_107 chr3L:18786217-18786337 1.7e-05 110_[+3]_2 chr3R:19182988-19183108 1.7e-05 100_[+3]_12 chr2L:14616065-14616185 1.7e-05 26_[+3]_86 chrX:11325354-11325474 1.7e-05 61_[+3]_51 chr3R:20317919-20318039 1.7e-05 42_[+3]_70 chr3R:7075093-7075213 1.7e-05 22_[+3]_90 chr2L:16530945-16531065 1.7e-05 70_[+3]_42 chr4:1146477-1146597 1.9e-05 92_[+3]_20 chr2L:108050-108170 2.6e-05 11_[+3]_101 chr2L:20676036-20676156 3.7e-05 70_[+3]_42 chrX:7291073-7291193 3.7e-05 [+3]_112 chr2R:19141896-19142016 3.7e-05 3_[+3]_109 chrX:6853532-6853652 3.7e-05 96_[+3]_16 chr2R:15922027-15922147 4.5e-05 78_[+3]_34 chr3R:25881288-25881408 7e-05 15_[+3]_97 chr2R:16150119-16150239 7e-05 38_[+3]_74 chr3L:548989-549109 7e-05 92_[+3]_20 chrX:2012299-2012419 7e-05 28_[+3]_84 chr3L:1568485-1568605 7.3e-05 106_[+3]_6 chr3L:3395498-3395618 0.00011 93_[+3]_19 chr3R:24589245-24589365 0.00011 98_[+3]_14 chr3R:30563207-30563327 0.00011 59_[+3]_53 chr3R:4821296-4821416 0.00012 10_[+3]_102 chr3L:12802711-12802831 0.00012 42_[+3]_70 chr3R:19153542-19153662 0.00013 110_[+3]_2 chr2L:9495511-9495631 0.00015 72_[+3]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTKTGYG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGTKTGYG width=8 seqs=30 chr3L:7866785-7866905 ( 58) CGTGTGCG 1 chr3L:12773431-12773551 ( 56) CGTGTGCG 1 chr3R:6406846-6406966 ( 76) CGTGTGTG 1 chr2R:16150321-16150441 ( 6) CGTGTGTG 1 chr3L:18786217-18786337 ( 111) TGTGTGCG 1 chr3R:19182988-19183108 ( 101) TGTGTGCG 1 chr2L:14616065-14616185 ( 27) CGTGTGTG 1 chrX:11325354-11325474 ( 62) CGTGTGTG 1 chr3R:20317919-20318039 ( 43) TGTGTGCG 1 chr3R:7075093-7075213 ( 23) TGTGTGCG 1 chr2L:16530945-16531065 ( 71) CGTGTGTG 1 chr4:1146477-1146597 ( 93) CGCGTGCG 1 chr2L:108050-108170 ( 12) CGTTTGCG 1 chr2L:20676036-20676156 ( 71) TGTGTGTG 1 chrX:7291073-7291193 ( 1) TGTGTGTG 1 chr2R:19141896-19142016 ( 4) TGTGTGTG 1 chrX:6853532-6853652 ( 97) TGTGTGTG 1 chr2R:15922027-15922147 ( 79) TGCGTGCG 1 chr3R:25881288-25881408 ( 16) TGTTTGCG 1 chr2R:16150119-16150239 ( 39) CGTGCGCG 1 chr3L:548989-549109 ( 93) TGTTTGCG 1 chrX:2012299-2012419 ( 29) TGTTTGCG 1 chr3L:1568485-1568605 ( 107) CGCTTGCG 1 chr3L:3395498-3395618 ( 94) TGTTTGTG 1 chr3R:24589245-24589365 ( 99) TGTTTGTG 1 chr3R:30563207-30563327 ( 60) TGTTTGTG 1 chr3R:4821296-4821416 ( 11) CGCTTGTG 1 chr3L:12802711-12802831 ( 43) CGCTTGTG 1 chr3R:19153542-19153662 ( 111) CGTTCGCG 1 chr2L:9495511-9495631 ( 73) CGCGCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTKTGYG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5839 E= 3.1e-001 -1155 144 -1155 68 -1155 -1155 243 -1155 -1155 12 -1155 135 -1155 -1155 177 23 -1155 -88 -1155 152 -1155 -1155 243 -1155 -1155 144 -1155 68 -1155 -1155 243 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTKTGYG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 3.1e-001 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.633333 0.366667 0.000000 0.100000 0.000000 0.900000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTKTGYG MEME-3 regular expression -------------------------------------------------------------------------------- [CT]G[TC][GT]TG[CT]G -------------------------------------------------------------------------------- Time 20.07 secs. ******************************************************************************** ******************************************************************************** MOTIF GCSWYGSS MEME-4 width = 8 sites = 27 llr = 245 E-value = 1.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCSWYGSS MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::5:::: pos.-specific C :a323:66 probability G a:7::a44 matrix T :::37::: bits 2.4 ** * 2.2 ** * 2.0 ** * 1.7 ** * Relative 1.5 *** *** Entropy 1.2 *** *** (13.1 bits) 1.0 *** **** 0.7 *** **** 0.5 *** **** 0.2 ******** 0.0 -------- Multilevel GCGATGCC consensus CTC GG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSWYGSS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:10333691-10333811 104 3.93e-06 CTGATTTATC GCGATGCC GAGATGAAT chrX:13757046-13757166 95 1.25e-05 GCCCTAAGGA GCGCTGCC ATACTGTGTT chr2L:14616065-14616185 67 1.25e-05 AAACTAGGCA GCGCTGCC GTCGCCGGCT chr2R:15922027-15922147 60 1.61e-05 GACGCTCTAC GCGACGCG ATTGAAAGTG chr2R:5782749-5782869 87 1.61e-05 GGCACACCCG GCGACGCG TGAAGTTCAA chr3L:17047903-17048023 18 2.39e-05 TTGCTCTGGC GCGATGGC ATCGGTTTAA chr3R:21377332-21377452 89 2.39e-05 GAGATTGCTG GCGATGGC AAAACAAAAA chr2L:452801-452921 78 2.39e-05 AGGCACTTTC GCGTTGCC GAAGAGGGCA chr2R:14769364-14769484 30 3.08e-05 ACAAACGACG GCGACGGC GAAAAAATTA chr3R:24031701-24031821 104 4.85e-05 TCCGCTTTTT GCGATGGG GAGCGGAGC chr2R:18141294-18141414 69 4.85e-05 aagaccgaaa gccaCGCC GCTTTTTTTC chr3L:15530813-15530933 66 4.85e-05 AATGTCTGCT GCGTTGCG TATGTTTACA chr3R:20317919-20318039 52 4.85e-05 TTGTGTGCGC GCGTTGCG AGCGGCAGAC chr3L:7339576-7339696 83 4.85e-05 CCATTTGAAA GCCACGCC AACGAGAACC chr3R:30563207-30563327 45 4.85e-05 TTAAACAATT GCGCTGGC TGCAAATTGT chr2R:10541379-10541499 100 5.44e-05 ACACGATAAC GCGACGGG GGGAAAAGCA chr2R:17085693-17085813 72 5.44e-05 GCTCCAAACT GCGTCGCG AAATTCCTAA chr2R:6245431-6245551 64 5.44e-05 GCTTTTGGCT GCGTCGCG AGGTTTAGTT chr3R:11628482-11628602 68 6.45e-05 CTGCAGTGCA GCCCTGCC AATAAGTATC chr2L:10967922-10968042 37 6.45e-05 CAGCGACGTC GCGTTGGC AGCGTCCTCC chr2R:10886726-10886846 64 6.45e-05 TTGTTAGCCA GCCCTGCC GAGCAAAACA chr3L:6216105-6216225 64 6.45e-05 CAAAGATACA GCCATGCG TTAATATCTT chrX:10786107-10786227 37 7.27e-05 ACAATCAATT GCCACGCG TTTTACTATA chr3R:19153542-19153662 92 8.18e-05 ATATTTCTCC GCCTTGCC AGTTTTACGT chr3L:22276720-22276840 61 8.18e-05 TAAAGAAATC GCCATGGC TCCATAAGGA chr3L:1602652-1602772 30 9.26e-05 TGTGCTAAAT GCGTTGGG ACAGTATTTT chr3R:25074563-25074683 72 1.21e-04 TAGCGGCAAG GCCCTGGG CTTTTTAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSWYGSS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10333691-10333811 3.9e-06 103_[+4]_9 chrX:13757046-13757166 1.2e-05 94_[+4]_18 chr2L:14616065-14616185 1.2e-05 66_[+4]_46 chr2R:15922027-15922147 1.6e-05 59_[+4]_53 chr2R:5782749-5782869 1.6e-05 86_[+4]_26 chr3L:17047903-17048023 2.4e-05 17_[+4]_95 chr3R:21377332-21377452 2.4e-05 88_[+4]_24 chr2L:452801-452921 2.4e-05 77_[+4]_35 chr2R:14769364-14769484 3.1e-05 29_[+4]_83 chr3R:24031701-24031821 4.8e-05 103_[+4]_9 chr2R:18141294-18141414 4.8e-05 68_[+4]_44 chr3L:15530813-15530933 4.8e-05 65_[+4]_47 chr3R:20317919-20318039 4.8e-05 51_[+4]_61 chr3L:7339576-7339696 4.8e-05 82_[+4]_30 chr3R:30563207-30563327 4.8e-05 44_[+4]_68 chr2R:10541379-10541499 5.4e-05 99_[+4]_13 chr2R:17085693-17085813 5.4e-05 71_[+4]_41 chr2R:6245431-6245551 5.4e-05 63_[+4]_49 chr3R:11628482-11628602 6.5e-05 67_[+4]_45 chr2L:10967922-10968042 6.5e-05 36_[+4]_76 chr2R:10886726-10886846 6.5e-05 63_[+4]_49 chr3L:6216105-6216225 6.5e-05 63_[+4]_49 chrX:10786107-10786227 7.3e-05 36_[+4]_76 chr3R:19153542-19153662 8.2e-05 91_[+4]_21 chr3L:22276720-22276840 8.2e-05 60_[+4]_52 chr3L:1602652-1602772 9.3e-05 29_[+4]_83 chr3R:25074563-25074683 0.00012 71_[+4]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSWYGSS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCSWYGSS width=8 seqs=27 chr2L:10333691-10333811 ( 104) GCGATGCC 1 chrX:13757046-13757166 ( 95) GCGCTGCC 1 chr2L:14616065-14616185 ( 67) GCGCTGCC 1 chr2R:15922027-15922147 ( 60) GCGACGCG 1 chr2R:5782749-5782869 ( 87) GCGACGCG 1 chr3L:17047903-17048023 ( 18) GCGATGGC 1 chr3R:21377332-21377452 ( 89) GCGATGGC 1 chr2L:452801-452921 ( 78) GCGTTGCC 1 chr2R:14769364-14769484 ( 30) GCGACGGC 1 chr3R:24031701-24031821 ( 104) GCGATGGG 1 chr2R:18141294-18141414 ( 69) GCCACGCC 1 chr3L:15530813-15530933 ( 66) GCGTTGCG 1 chr3R:20317919-20318039 ( 52) GCGTTGCG 1 chr3L:7339576-7339696 ( 83) GCCACGCC 1 chr3R:30563207-30563327 ( 45) GCGCTGGC 1 chr2R:10541379-10541499 ( 100) GCGACGGG 1 chr2R:17085693-17085813 ( 72) GCGTCGCG 1 chr2R:6245431-6245551 ( 64) GCGTCGCG 1 chr3R:11628482-11628602 ( 68) GCCCTGCC 1 chr2L:10967922-10968042 ( 37) GCGTTGGC 1 chr2R:10886726-10886846 ( 64) GCCCTGCC 1 chr3L:6216105-6216225 ( 64) GCCATGCG 1 chrX:10786107-10786227 ( 37) GCCACGCG 1 chr3R:19153542-19153662 ( 92) GCCTTGCC 1 chr3L:22276720-22276840 ( 61) GCCATGGC 1 chr3L:1602652-1602772 ( 30) GCGTTGGG 1 chr3R:25074563-25074683 ( 72) GCCCTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSWYGSS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9783 E= 1.4e+001 -1140 -1140 243 -1140 -1140 244 -1140 -1140 -1140 86 185 -1140 60 28 -1140 -8 -1140 86 -1140 109 -1140 -1140 243 -1140 -1140 178 100 -1140 -1140 160 126 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSWYGSS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.4e+001 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.481481 0.222222 0.000000 0.296296 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.629630 0.370370 0.000000 0.000000 0.555556 0.444444 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSWYGSS MEME-4 regular expression -------------------------------------------------------------------------------- GC[GC][ATC][TC]G[CG][CG] -------------------------------------------------------------------------------- Time 26.26 secs. ******************************************************************************** ******************************************************************************** MOTIF KGCWCCGC MEME-5 width = 8 sites = 6 llr = 69 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGCWCCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::5:::: pos.-specific C ::a:aa:a probability G 7a::::a: matrix T 3::5:::: bits 2.4 ** **** 2.2 ** **** 2.0 ** **** 1.7 ** **** Relative 1.5 ** **** Entropy 1.2 *** **** (16.6 bits) 1.0 *** **** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCACCGC consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCWCCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19498212-19498332 102 4.58e-06 GGCGGTCCGG GGCTCCGC GCACTTGACT chrX:8141978-8142098 8 4.58e-06 aagcaca ggcaccgc acaccgacac chr3L:7866785-7866905 89 4.58e-06 ATTTGCTTAA GGCTCCGC CGCTAGGTAA chr3L:548989-549109 2 4.58e-06 C GGCTCCGC CTCTTTGCTC chr3R:27137884-27138004 39 1.23e-05 CCAAATTAAA TGCACCGC AAGAAACAGG chr3L:3787742-3787862 76 1.23e-05 TCTTTCGCTT TGCACCGC GAAATTAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCWCCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19498212-19498332 4.6e-06 101_[+5]_11 chrX:8141978-8142098 4.6e-06 7_[+5]_105 chr3L:7866785-7866905 4.6e-06 88_[+5]_24 chr3L:548989-549109 4.6e-06 1_[+5]_111 chr3R:27137884-27138004 1.2e-05 38_[+5]_74 chr3L:3787742-3787862 1.2e-05 75_[+5]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCWCCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGCWCCGC width=8 seqs=6 chrX:19498212-19498332 ( 102) GGCTCCGC 1 chrX:8141978-8142098 ( 8) GGCACCGC 1 chr3L:7866785-7866905 ( 89) GGCTCCGC 1 chr3L:548989-549109 ( 2) GGCTCCGC 1 chr3R:27137884-27138004 ( 39) TGCACCGC 1 chr3L:3787742-3787862 ( 76) TGCACCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCWCCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.6482 E= 1.5e+004 -923 -923 185 9 -923 -923 243 -923 -923 244 -923 -923 65 -923 -923 67 -923 244 -923 -923 -923 244 -923 -923 -923 -923 243 -923 -923 244 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCWCCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.5e+004 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGCWCCGC MEME-5 regular expression -------------------------------------------------------------------------------- [GT]GC[AT]CCGC -------------------------------------------------------------------------------- Time 32.38 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6245431-6245551 3.07e-02 63_[+4(5.44e-05)]_49 chr3R:30563207-30563327 4.01e-03 44_[+4(4.85e-05)]_68 chr2L:16548418-16548538 2.11e-01 120 chr3R:25882130-25882250 2.05e-01 120 chr3L:17625152-17625272 5.66e-01 120 chrX:6366143-6366263 7.98e-01 120 chrX:16334566-16334686 1.83e-01 120 chr3L:7339576-7339696 9.37e-04 26_[+1(2.48e-05)]_48_[+4(4.85e-05)]_\ 30 chr2L:1704906-1705026 7.82e-01 120 chrX:7706439-7706559 3.95e-01 120 chr2R:25012052-25012172 2.85e-01 120 chr3L:13903440-13903560 1.00e+00 120 chr2R:21312499-21312619 1.40e-01 52_[+2(3.17e-05)]_60 chrX:18082852-18082972 3.01e-01 120 chr3R:24320342-24320462 9.99e-01 120 chr3R:21140580-21140700 3.73e-01 120 chr3R:24104986-24105106 1.75e-03 20_[+1(6.58e-05)]_92 chr3L:9424608-9424728 1.47e-01 120 chr3R:16476568-16476688 9.61e-01 120 chr2R:13909065-13909185 9.48e-01 120 chr2L:19134823-19134943 9.76e-01 120 chr2R:12871697-12871817 4.95e-01 120 chr2R:13560719-13560839 3.42e-01 120 chrX:2012299-2012419 2.14e-02 28_[+3(6.96e-05)]_84 chr4:695980-696100 1.11e-01 120 chr4:834745-834865 9.81e-01 120 chr3L:18820522-18820642 5.25e-01 120 chr2R:11198203-11198323 3.86e-04 17_[+4(1.25e-05)]_95 chr2L:8938131-8938251 8.86e-01 120 chr3R:8980815-8980935 1.14e-03 56_[+1(6.93e-05)]_56 chr3L:12773431-12773551 4.28e-02 55_[+3(3.89e-06)]_57 chr2L:16530945-16531065 8.66e-02 70_[+3(1.71e-05)]_42 chr3R:16655326-16655446 9.84e-01 120 chr2R:13723370-13723490 9.69e-04 107_[+1(2.75e-05)]_5 chrX:17301683-17301803 3.61e-02 31_[+2(5.16e-05)]_81 chr2R:14698970-14699090 9.99e-01 120 chr2R:8614630-8614750 2.35e-02 37_[+1(6.58e-05)]_75 chr3R:25074563-25074683 7.85e-02 120 chr2L:9495511-9495631 1.78e-03 120 chr3R:31127566-31127686 9.92e-01 120 chr3R:7075093-7075213 2.80e-03 22_[+3(1.71e-05)]_2_[+3(6.96e-05)]_\ 80 chr3L:11450645-11450765 1.00e+00 120 chr3L:124030-124150 3.13e-01 120 chr3L:548989-549109 1.03e-04 1_[+5(4.58e-06)]_83_[+3(6.96e-05)]_\ 20 chr3L:7125374-7125494 1.40e-01 120 chrX:6853532-6853652 6.79e-03 94_[+3(3.72e-05)]_18 chr2R:19141676-19141796 7.36e-03 120 chr3L:15923487-15923607 9.25e-01 120 chr2R:19395972-19396092 1.82e-01 120 chr2R:9284040-9284160 1.66e-01 88_[+1(4.76e-05)]_24 chr3L:9692393-9692513 9.66e-01 120 chr4:466708-466828 9.92e-01 120 chrX:13681820-13681940 9.64e-01 120 chr2R:10195035-10195155 9.99e-01 120 chr2R:8051553-8051673 9.90e-01 120 chr3R:20317919-20318039 8.26e-05 42_[+3(1.71e-05)]_1_[+4(4.85e-05)]_\ 36_[+1(7.62e-05)]_17 chr2L:5270828-5270948 3.22e-01 40_[+2(3.17e-05)]_72 chr3L:22276720-22276840 1.07e-02 60_[+4(8.18e-05)]_52 chr2L:10277535-10277655 7.71e-01 120 chr2R:16150119-16150239 1.49e-02 38_[+3(6.96e-05)]_74 chr3L:16494852-16494972 8.13e-01 120 chr3L:6352382-6352502 4.38e-02 120 chr3R:11243185-11243305 1.00e+00 120 chr2R:9543730-9543850 1.21e-01 108_[+2(5.16e-05)]_4 chr3L:22888999-22889119 1.48e-01 120 chr2L:13203367-13203487 9.94e-01 120 chr2L:18119785-18119905 8.97e-01 120 chr3L:15530813-15530933 1.65e-02 65_[+4(4.85e-05)]_47 chr3L:19294810-19294930 1.54e-01 120 chrX:635923-636043 6.57e-01 120 chr2R:25253321-25253441 6.08e-01 120 chr3L:7782369-7782489 8.93e-01 120 chr4:1146477-1146597 1.85e-02 92_[+3(1.94e-05)]_20 chrX:14213662-14213782 2.82e-01 120 chrX:11325354-11325474 1.36e-02 61_[+3(1.71e-05)]_5_[+3(8.01e-05)]_\ 38 chr3R:7108110-7108230 5.56e-01 120 chr3L:7156901-7157021 3.26e-01 120 chr4:1053900-1054020 2.89e-01 120 chr2R:16159161-16159281 6.83e-02 58_[+2(1.17e-05)]_54 chr2R:12670077-12670197 1.25e-02 4_[+1(2.98e-05)]_10_[+1(5.22e-05)]_\ 90 chr3R:29480081-29480201 5.19e-02 120 chr2R:7729997-7730117 9.05e-01 120 chr2R:21417224-21417344 8.84e-01 120 chr2L:14501683-14501803 8.79e-01 120 chr3R:9581175-9581295 2.93e-02 39_[+2(1.17e-05)]_73 chr3R:31777811-31777931 1.87e-03 82_[+2(1.17e-05)]_30 chr2R:17548783-17548903 4.46e-01 120 chr3L:8058423-8058543 2.70e-02 41_[+2(7.19e-05)]_71 chr3R:5746786-5746906 3.82e-01 120 chr3R:18785932-18786052 5.32e-01 120 chr3R:24589245-24589365 9.79e-02 120 chr2R:18141294-18141414 7.28e-06 68_[+4(4.85e-05)]_21_[+1(3.59e-06)]_\ 15 chr3R:23284391-23284511 1.43e-01 120 chr3L:1576661-1576781 1.86e-03 1_[+1(1.08e-05)]_111 chrX:9156564-9156684 9.86e-01 120 chr2L:452801-452921 1.42e-02 77_[+4(2.39e-05)]_35 chr3L:12802711-12802831 7.56e-02 120 chr2L:3373293-3373413 1.67e-02 120 chr2R:19141896-19142016 6.78e-02 3_[+3(3.72e-05)]_109 chr4:1060696-1060816 9.47e-01 120 chrX:3719513-3719633 2.43e-01 120 chr2R:17020209-17020329 5.31e-01 120 chr2L:13203964-13204084 2.18e-02 109_[+1(8.85e-05)]_3 chr2R:24745997-24746117 1.86e-01 120 chrX:15853153-15853273 1.42e-01 120 chrX:10786107-10786227 1.42e-02 36_[+4(7.27e-05)]_76 chr2L:8083617-8083737 1.05e-02 91_[+2(1.17e-05)]_21 chr2L:7182032-7182152 2.19e-01 120 chr2L:10396998-10397118 8.87e-01 120 chr2R:17085693-17085813 4.90e-02 71_[+4(5.44e-05)]_41 chr2R:24022213-24022333 6.47e-01 120 chr3R:15933849-15933969 4.19e-03 35_[+1(3.59e-06)]_77 chr3R:19153542-19153662 2.12e-03 91_[+4(8.18e-05)]_21 chr3R:15804138-15804258 1.14e-01 120 chr2R:14769364-14769484 3.73e-02 29_[+4(3.08e-05)]_83 chr2L:14011847-14011967 8.35e-01 120 chr2L:10333691-10333811 1.75e-02 103_[+4(3.93e-06)]_9 chr3L:15814141-15814261 6.37e-01 120 chr2L:14616065-14616185 3.14e-06 26_[+3(1.71e-05)]_32_[+4(1.25e-05)]_\ 46 chrX:14727682-14727802 8.76e-01 120 chr3R:12630476-12630596 1.00e+00 120 chr4:1199333-1199453 3.17e-01 120 chrX:8493629-8493749 5.01e-01 120 chr3R:10521334-10521454 4.59e-01 120 chr3R:9759474-9759594 8.99e-01 120 chr3L:7866785-7866905 2.14e-06 57_[+3(3.89e-06)]_23_[+5(4.58e-06)]_\ 24 chr2L:7434856-7434976 9.79e-01 120 chr3L:19088090-19088210 2.99e-01 71_[+2(3.17e-05)]_41 chr3L:16164526-16164646 1.60e-01 84_[+2(7.19e-05)]_28 chr3L:1568485-1568605 1.56e-02 106_[+3(7.35e-05)]_6 chr2R:25084250-25084370 3.85e-01 120 chr3L:17791606-17791726 8.31e-01 120 chrX:16930487-16930607 4.70e-01 120 chr3R:20556855-20556975 3.62e-01 120 chr2L:10260802-10260922 6.39e-01 120 chr3R:19182988-19183108 1.31e-02 100_[+3(1.71e-05)]_12 chr2R:5782749-5782869 1.31e-03 86_[+4(1.61e-05)]_26 chr2R:7745288-7745408 1.65e-03 25_[+1(3.59e-06)]_87 chr3L:11580072-11580192 9.91e-01 120 chr3L:1534197-1534317 8.60e-01 120 chr3L:18786217-18786337 5.61e-02 110_[+3(1.71e-05)]_2 chr3L:1730973-1731093 1.62e-01 120 chr3R:25881288-25881408 1.43e-02 15_[+3(6.96e-05)]_97 chr2R:10123766-10123886 9.59e-03 103_[+2(7.19e-05)]_9 chr3L:17310601-17310721 9.36e-01 120 chr2L:14234510-14234630 8.66e-01 120 chrX:13626037-13626157 4.10e-01 120 chr3R:31810313-31810433 9.28e-01 120 chr2L:108050-108170 1.30e-03 1_[+1(2.48e-05)]_2_[+3(2.60e-05)]_\ 101 chr3L:8449930-8450050 3.26e-01 120 chrX:11454192-11454312 8.05e-01 120 chr2R:10541379-10541499 6.97e-03 82_[+2(1.17e-05)]_9_[+4(5.44e-05)]_\ 13 chr3L:15955046-15955166 9.33e-01 120 chrX:8141978-8142098 1.38e-04 7_[+5(4.58e-06)]_18_[+2(1.17e-05)]_\ 79 chr3R:22494636-22494756 9.99e-01 120 chr2R:8127454-8127574 1.92e-01 120 chrX:12547785-12547905 3.79e-01 120 chrX:8145580-8145700 9.23e-01 120 chr3R:13660398-13660518 1.93e-01 120 chrX:17149013-17149133 9.22e-01 120 chr3L:3787742-3787862 4.07e-02 75_[+5(1.23e-05)]_37 chr2R:18397629-18397749 7.31e-01 120 chr3R:17605217-17605337 9.98e-01 120 chr2R:6575008-6575128 7.06e-01 120 chr3L:20406345-20406465 9.97e-01 120 chr2R:18351920-18352040 8.31e-02 60_[+1(5.67e-05)]_52 chr3L:1602652-1602772 5.34e-05 6_[+1(1.34e-06)]_15_[+4(9.26e-05)]_\ 83 chr3L:22872164-22872284 3.94e-02 1_[+1(3.66e-05)]_111 chr2L:7492053-7492173 6.57e-01 120 chr2R:7805683-7805803 7.71e-05 35_[+1(3.66e-05)]_9_[+2(1.17e-05)]_\ 60 chr2R:6668827-6668947 5.30e-01 120 chr3L:6216105-6216225 9.47e-03 43_[+2(3.17e-05)]_12_[+4(6.45e-05)]_\ 49 chr3R:20555878-20555998 7.94e-02 120 chr3L:19910136-19910256 2.84e-03 17_[+2(1.17e-05)]_95 chr3L:20518239-20518359 4.86e-01 120 chr2R:10886726-10886846 7.71e-02 63_[+4(6.45e-05)]_49 chr3R:10688975-10689095 9.99e-01 120 chr3L:4102616-4102736 8.58e-02 120 chr2L:1207618-1207738 1.00e+00 120 chrX:16580121-16580241 9.41e-01 120 chr3L:17740501-17740621 7.43e-01 120 chr3L:20520942-20521062 9.67e-01 120 chr2R:15922027-15922147 4.30e-04 59_[+4(1.61e-05)]_11_[+3(4.50e-05)]_\ 34 chr3L:3059441-3059561 7.42e-01 120 chr2L:2168327-2168447 1.64e-02 97_[+1(3.88e-05)]_15 chr3R:9220722-9220842 4.23e-01 120 chr3L:15034510-15034630 8.59e-01 120 chr2R:24943271-24943391 6.57e-01 120 chr2L:19791820-19791940 1.39e-01 120 chr3L:19847091-19847211 3.09e-02 120 chr3R:11581598-11581718 4.46e-02 120 chr3R:31771839-31771959 9.80e-01 120 chr2R:17469398-17469518 1.00e+00 120 chr2L:10249788-10249908 8.46e-03 62_[+2(5.16e-05)]_50 chr3L:17530001-17530121 4.79e-01 120 chr2L:10760763-10760883 6.20e-01 120 chr2L:10967922-10968042 5.42e-03 22_[+1(3.66e-05)]_6_[+4(6.45e-05)]_\ 76 chr3R:6368748-6368868 8.51e-01 120 chr3L:160714-160834 1.43e-01 120 chr3R:5564865-5564985 1.82e-01 120 chr3L:18837981-18838101 9.53e-01 120 chr3R:14659492-14659612 2.75e-01 120 chr2L:8364690-8364810 1.00e+00 120 chr3R:21377332-21377452 4.55e-03 88_[+4(2.39e-05)]_24 chr2L:10756205-10756325 1.37e-02 120 chr2R:15322480-15322600 1.34e-02 120 chrX:6678153-6678273 5.90e-02 8_[+2(7.19e-05)]_104 chr3L:15549093-15549213 7.87e-01 120 chr3R:11235072-11235192 4.38e-01 120 chr2L:156038-156158 5.93e-01 120 chr2R:21709631-21709751 6.16e-03 26_[+1(4.94e-06)]_86 chr2R:18172007-18172127 3.65e-01 120 chr2R:22641394-22641514 8.39e-01 120 chrX:16655814-16655934 2.21e-03 3_[+2(1.17e-05)]_109 chr3L:21065348-21065468 6.67e-01 120 chrX:10366066-10366186 1.15e-02 120 chr3R:23725874-23725994 1.47e-01 120 chr3R:11628482-11628602 5.80e-02 67_[+4(6.45e-05)]_45 chr3R:19326311-19326431 4.71e-01 120 chr2R:16150321-16150441 3.64e-03 5_[+3(1.71e-05)]_107 chr2R:10439015-10439135 2.75e-01 120 chr2R:10429704-10429824 9.65e-01 120 chr3R:22464607-22464727 9.86e-01 120 chr3L:13356136-13356256 9.91e-01 120 chr2L:5196869-5196989 7.20e-01 120 chr3L:3395498-3395618 1.58e-01 120 chrX:7291073-7291193 3.32e-03 [+3(3.72e-05)]_112 chr3R:26536252-26536372 3.93e-01 120 chr3R:23931518-23931638 1.00e+00 120 chrX:9135269-9135389 9.99e-01 120 chr3R:25275504-25275624 9.94e-01 120 chr3R:4821296-4821416 4.44e-03 49_[+1(6.58e-05)]_63 chrX:17582799-17582919 7.43e-01 120 chr2L:404135-404255 9.52e-01 120 chr2R:13494694-13494814 2.87e-01 120 chr2L:16819841-16819961 4.53e-01 120 chr3L:4134366-4134486 1.11e-01 120 chrX:19498212-19498332 6.70e-04 101_[+5(4.58e-06)]_11 chr3R:6406846-6406966 2.34e-02 75_[+3(1.71e-05)]_37 chr2R:8122931-8123051 1.99e-01 120 chr3R:8362540-8362660 5.68e-01 120 chr3R:4659941-4660061 1.94e-02 120 chrX:13757046-13757166 4.61e-02 94_[+4(1.25e-05)]_18 chr3R:27137884-27138004 4.18e-03 38_[+5(1.23e-05)]_74 chr2L:6455168-6455288 3.00e-02 4_[+2(1.17e-05)]_108 chr3L:11351450-11351570 2.37e-01 120 chr3L:17047903-17048023 8.31e-03 17_[+4(2.39e-05)]_95 chr3R:24031701-24031821 6.41e-02 103_[+4(4.85e-05)]_9 chr2L:20676036-20676156 7.72e-02 70_[+3(3.72e-05)]_42 chr2L:1094799-1094919 2.58e-03 84_[+1(3.88e-05)]_2_[+1(3.88e-05)]_\ 18 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************