******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12236.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:23141981-23142101 1.0000 120 chrX:7299950-7300070 1.0000 120 chr2L:17778477-17778597 1.0000 120 chr2L:7810636-7810756 1.0000 120 chr2L:9775351-9775471 1.0000 120 chr3L:17993439-17993559 1.0000 120 chr3L:10858609-10858729 1.0000 120 chr3R:13817595-13817715 1.0000 120 chr2L:16520088-16520208 1.0000 120 chr2L:15432376-15432496 1.0000 120 chr2R:19413324-19413444 1.0000 120 chr3L:4615215-4615335 1.0000 120 chr2L:10276947-10277067 1.0000 120 chr3R:30802916-30803036 1.0000 120 chrX:17473415-17473535 1.0000 120 chr2L:7266110-7266230 1.0000 120 chr3R:30919094-30919214 1.0000 120 chr2R:12729948-12730068 1.0000 120 chr2L:22036943-22037063 1.0000 120 chr2R:8242630-8242750 1.0000 120 chrX:5917201-5917321 1.0000 120 chr2R:6603095-6603215 1.0000 120 chr4:225972-226092 1.0000 120 chr4:980247-980367 1.0000 120 chr3R:19847933-19848053 1.0000 120 chr3R:6667428-6667548 1.0000 120 chr3R:15983733-15983853 1.0000 120 chr2R:18609027-18609147 1.0000 120 chrX:17780448-17780568 1.0000 120 chr2L:15337367-15337487 1.0000 120 chrX:13088121-13088241 1.0000 120 chr2R:22540022-22540142 1.0000 120 chr2R:22525212-22525332 1.0000 120 chr2L:8554462-8554582 1.0000 120 chr2R:21527354-21527474 1.0000 120 chr2R:23180956-23181076 1.0000 120 chr3R:11351486-11351606 1.0000 120 chr3R:16069436-16069556 1.0000 120 chr2R:13990404-13990524 1.0000 120 chr2R:20126189-20126309 1.0000 120 chr3R:31309410-31309530 1.0000 120 chr2L:7572024-7572144 1.0000 120 chr2R:21848583-21848703 1.0000 120 chr2R:11175526-11175646 1.0000 120 chr2L:19219514-19219634 1.0000 120 chrX:6614421-6614541 1.0000 120 chr3R:5107005-5107125 1.0000 120 chr3R:30767243-30767363 1.0000 120 chr3L:20944341-20944461 1.0000 120 chrX:19164845-19164965 1.0000 120 chr2L:11394288-11394408 1.0000 120 chr3R:11617480-11617600 1.0000 120 chr3R:26011618-26011738 1.0000 120 chrX:17582786-17582906 1.0000 120 chr2L:9525074-9525194 1.0000 120 chr2L:10505032-10505152 1.0000 120 chr3R:15089425-15089545 1.0000 120 chrX:3367415-3367535 1.0000 120 chr2L:12372582-12372702 1.0000 120 chr3R:13885170-13885290 1.0000 120 chr3L:15199337-15199457 1.0000 120 chr3R:10598345-10598465 1.0000 120 chr3L:14194226-14194346 1.0000 120 chr3R:29541514-29541634 1.0000 120 chr2L:6948785-6948905 1.0000 120 chr2R:14077541-14077661 1.0000 120 chr2R:14494777-14494897 1.0000 120 chr3R:10150717-10150837 1.0000 120 chr3R:25885286-25885406 1.0000 120 chrX:6643065-6643185 1.0000 120 chr3R:5065045-5065165 1.0000 120 chr3L:4272365-4272485 1.0000 120 chr3L:3390729-3390849 1.0000 120 chrX:20506050-20506170 1.0000 120 chr2L:7339811-7339931 1.0000 120 chr3L:8925819-8925939 1.0000 120 chr3R:22664373-22664493 1.0000 120 chr3R:21856774-21856894 1.0000 120 chrX:6994637-6994757 1.0000 120 chr2R:15754445-15754565 1.0000 120 chr3R:30501285-30501405 1.0000 120 chr3L:3518999-3519119 1.0000 120 chr3R:15670663-15670783 1.0000 120 chrX:19770224-19770344 1.0000 120 chr2L:12351074-12351194 1.0000 120 chr3R:18242808-18242928 1.0000 120 chr2R:23979551-23979671 1.0000 120 chr3R:22023101-22023221 1.0000 120 chrX:7000974-7001094 1.0000 120 chr3L:12606446-12606566 1.0000 120 chr3R:8923069-8923189 1.0000 120 chr3R:27138086-27138206 1.0000 120 chr3L:13068381-13068501 1.0000 120 chrX:3134428-3134548 1.0000 120 chr2L:974249-974369 1.0000 120 chr3R:16655847-16655967 1.0000 120 chr3L:11273764-11273884 1.0000 120 chr3L:22407745-22407865 1.0000 120 chr3L:16385568-16385688 1.0000 120 chr3L:5807502-5807622 1.0000 120 chr2L:11331833-11331953 1.0000 120 chr3L:20389131-20389251 1.0000 120 chr2L:2494660-2494780 1.0000 120 chr2R:22387709-22387829 1.0000 120 chr3R:10140469-10140589 1.0000 120 chrX:3538924-3539044 1.0000 120 chr3R:24360098-24360218 1.0000 120 chr3L:5857096-5857216 1.0000 120 chr2R:6524892-6525012 1.0000 120 chr3L:6059160-6059280 1.0000 120 chr3R:8308808-8308928 1.0000 120 chr2L:16476540-16476660 1.0000 120 chr3L:8018667-8018787 1.0000 120 chr2L:1462207-1462327 1.0000 120 chr2R:22700673-22700793 1.0000 120 chr2R:9406810-9406930 1.0000 120 chr2R:13261808-13261928 1.0000 120 chr3L:3875200-3875320 1.0000 120 chr3L:15715924-15716044 1.0000 120 chr2L:16677124-16677244 1.0000 120 chr2R:14906376-14906496 1.0000 120 chr2R:15351257-15351377 1.0000 120 chr2R:11469598-11469718 1.0000 120 chr2L:6283419-6283539 1.0000 120 chrX:3704496-3704616 1.0000 120 chr3R:23300775-23300895 1.0000 120 chr2R:7987888-7988008 1.0000 120 chr3R:23872910-23873030 1.0000 120 chr2L:3852271-3852391 1.0000 120 chr3R:6504553-6504673 1.0000 120 chrX:2294665-2294785 1.0000 120 chr2L:21037879-21037999 1.0000 120 chr2R:21134537-21134657 1.0000 120 chrX:11660608-11660728 1.0000 120 chr3L:1861900-1862020 1.0000 120 chrX:7333324-7333444 1.0000 120 chr2R:10303698-10303818 1.0000 120 chr2L:11206948-11207068 1.0000 120 chr3R:5998445-5998565 1.0000 120 chr3L:745715-745835 1.0000 120 chr2R:18288963-18289083 1.0000 120 chr3L:1414174-1414294 1.0000 120 chr2R:7989840-7989960 1.0000 120 chr3L:5987763-5987883 1.0000 120 chr2L:6700745-6700865 1.0000 120 chr3R:31053992-31054112 1.0000 120 chrX:3188577-3188697 1.0000 120 chr2L:7043181-7043301 1.0000 120 chr3R:20276108-20276228 1.0000 120 chr2L:3598633-3598753 1.0000 120 chr2R:22657051-22657171 1.0000 120 chrX:16644917-16645037 1.0000 120 chr2R:9006899-9007019 1.0000 120 chr2R:11628145-11628265 1.0000 120 chrX:2061273-2061393 1.0000 120 chr3L:21130977-21131097 1.0000 120 chr3R:31793824-31793944 1.0000 120 chr3R:23387023-23387143 1.0000 120 chr3L:14956443-14956563 1.0000 120 chr3L:1352132-1352252 1.0000 120 chr3R:20263842-20263962 1.0000 120 chr3L:9461735-9461855 1.0000 120 chr3L:14780324-14780444 1.0000 120 chr2R:11541198-11541318 1.0000 120 chrX:6375762-6375882 1.0000 120 chr3L:5974688-5974808 1.0000 120 chr3R:24809686-24809806 1.0000 120 chrX:9137253-9137373 1.0000 120 chr3R:31060314-31060434 1.0000 120 chrX:19683382-19683502 1.0000 120 chr3R:10350755-10350875 1.0000 120 chr2R:9309660-9309780 1.0000 120 chr3R:31169100-31169220 1.0000 120 chr3R:31596336-31596456 1.0000 120 chr3R:22596590-22596710 1.0000 120 chr3R:30413947-30414067 1.0000 120 chr3L:5926045-5926165 1.0000 120 chr2R:20067307-20067427 1.0000 120 chr2R:17514131-17514251 1.0000 120 chr2L:1614158-1614278 1.0000 120 chr2R:11639703-11639823 1.0000 120 chr3R:23922315-23922435 1.0000 120 chr3R:26888442-26888562 1.0000 120 chr3L:1177111-1177231 1.0000 120 chr3L:21007862-21007982 1.0000 120 chr2R:22686553-22686673 1.0000 120 chr2R:10103835-10103955 1.0000 120 chr2L:6698464-6698584 1.0000 120 chr3L:3665439-3665559 1.0000 120 chr3R:19472427-19472547 1.0000 120 chr2L:18900080-18900200 1.0000 120 chr2R:12019255-12019375 1.0000 120 chr3R:5319212-5319332 1.0000 120 chr3L:17912672-17912792 1.0000 120 chr3R:9055231-9055351 1.0000 120 chr2L:6339622-6339742 1.0000 120 chr3R:6468141-6468261 1.0000 120 chr3R:26566996-26567116 1.0000 120 chr3L:21509422-21509542 1.0000 120 chr2R:15565337-15565457 1.0000 120 chr3R:4997543-4997663 1.0000 120 chr3R:27209156-27209276 1.0000 120 chr2R:22511622-22511742 1.0000 120 chr2R:23176792-23176912 1.0000 120 chr3R:23176569-23176689 1.0000 120 chr3R:24206872-24206992 1.0000 120 chr3L:2489619-2489739 1.0000 120 chr2L:11417716-11417836 1.0000 120 chr2L:7204284-7204404 1.0000 120 chr2R:11095289-11095409 1.0000 120 chr2R:20601144-20601264 1.0000 120 chr3R:16496282-16496402 1.0000 120 chr3R:21203971-21204091 1.0000 120 chr2L:4892159-4892279 1.0000 120 chr3R:15676360-15676480 1.0000 120 chrX:5420744-5420864 1.0000 120 chr2L:19159356-19159476 1.0000 120 chr2L:3566662-3566782 1.0000 120 chr3R:4992530-4992650 1.0000 120 chr2L:20897110-20897230 1.0000 120 chr2R:7474298-7474418 1.0000 120 chr3L:9446904-9447024 1.0000 120 chr2L:16703897-16704017 1.0000 120 chr3R:9870089-9870209 1.0000 120 chrX:11548873-11548993 1.0000 120 chr2R:23940128-23940248 1.0000 120 chrX:21241975-21242095 1.0000 120 chr2L:18921424-18921544 1.0000 120 chr2L:10552912-10553032 1.0000 120 chr2R:7031119-7031239 1.0000 120 chr3R:26130695-26130815 1.0000 120 chr3R:31395352-31395472 1.0000 120 chr3L:10845158-10845278 1.0000 120 chr3L:8549358-8549478 1.0000 120 chr2L:20945363-20945483 1.0000 120 chr3L:18625953-18626073 1.0000 120 chr3L:16975940-16976060 1.0000 120 chr3L:14613096-14613216 1.0000 120 chr3L:22163836-22163956 1.0000 120 chr2R:11738720-11738840 1.0000 120 chr3L:20313584-20313704 1.0000 120 chr2L:1108387-1108507 1.0000 120 chr3R:21151619-21151739 1.0000 120 chr2L:6700952-6701072 1.0000 120 chrX:16158602-16158722 1.0000 120 chr2L:11807111-11807231 1.0000 120 chr3L:5881805-5881925 1.0000 120 chr3R:8105282-8105402 1.0000 120 chr3L:17659305-17659425 1.0000 120 chr3L:12062975-12063095 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG12236/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12236.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.301 C 0.198 G 0.191 T 0.31 Background letter frequencies (from file dataset with add-one prior applied): A 0.301 C 0.198 G 0.191 T 0.31 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TRTTTGYH MEME-1 width = 8 sites = 79 llr = 620 E-value = 1.3e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif TRTTTGYH MEME-1 Description -------------------------------------------------------------------------------- Simplified A :3:::::2 pos.-specific C ::::::53 probability G :7:::a11 matrix T a:aaa:43 bits 2.4 * 2.2 * 1.9 * 1.7 * **** Relative 1.4 * **** Entropy 1.2 ****** (11.3 bits) 1.0 ******* 0.7 ******* 0.5 ******* 0.2 ******* 0.0 -------- Multilevel TGTTTGCC consensus A TT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTGYH MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7031119-7031239 70 1.32e-05 CTGGTTTTCT TGTTTGCC AACGACAATT chr3R:15676360-15676480 75 1.32e-05 GCCCACTGTT TGTTTGCC TTGTTTGCCT chr2L:7043181-7043301 39 1.32e-05 AAAAGCCAGC TGTTTGCC GATGTTTGTT chr2L:6700745-6700865 102 1.32e-05 CCACTTGCTC TGTTTGCC CACAAACATT chrX:11660608-11660728 87 1.32e-05 TCTTGGCCTT TGTTTGCC TTGGCCAGTC chr2L:21037879-21037999 18 1.32e-05 GTTTGGTTTA TGTTTGCC ATGTAAACAA chr3L:15715924-15716044 9 1.32e-05 GCTCGCCT TGTTTGCC CTACGTTAAT chr3L:8018667-8018787 90 1.32e-05 GACAATTGTT TGTTTGCC CTAGATTCTC chr2L:16476540-16476660 41 1.32e-05 CTTCATTCCA TGTTTGCC GCTGGTACAC chr3L:5807502-5807622 12 1.32e-05 TGCCGTCGAG TGTTTGCC GTGAGTCTTG chrX:6994637-6994757 110 1.32e-05 ATTGCTCGGC TGTTTGCC TTT chr3R:5107005-5107125 57 1.32e-05 tgtatatctg tGTTTGCC GGCTGAAAAC chr2L:22036943-22037063 38 1.32e-05 GTACACGCCT TGTTTGCC TTTTGCGTCT chr3R:30919094-30919214 19 1.32e-05 GTCCTTAGCT TGTTTGCC AAGTTGTTAC chr2R:7474298-7474418 58 3.39e-05 GCTAATCCAG TGTTTGCT AATGTCGTTC chr2R:9006899-9007019 34 3.39e-05 TTCTGGCTAA TGTTTGCT GCCTCTGTTT chr3R:20276108-20276228 82 3.39e-05 ACTTTCCTGT TGTTTGCT CAACACAACG chr2R:9406810-9406930 75 3.39e-05 ttttggttta tgtttGCT ATTGGGTGGA chr2R:19413324-19413444 64 3.39e-05 ACATCACACT TGTTTGCT GCGGGACACA chr2L:16520088-16520208 71 3.39e-05 GACTTTTTTT TGTTTGCT GTGCGCGAAA chrX:21241975-21242095 109 5.46e-05 CAACCGCCtt tgtttgtc tcca chr3R:9870089-9870209 31 5.46e-05 TGCGTATCGG TGTTTGTC TAGTGCCCAT chr2R:22657051-22657171 91 5.46e-05 GTTGTTCATC TGTTTGTC AAGCCCCCGT chr2R:22387709-22387829 80 5.46e-05 CAACAATATT TGTTTGTC TGCATGAGCA chr2R:18609027-18609147 45 5.46e-05 CCGTTTTGTT TGTTTGTC TGGAATTGAA chr3L:4615215-4615335 18 5.46e-05 AAtgtttgtt tgtttgtc tgtctggctg chr3L:2489619-2489739 22 7.46e-05 CTACGTGAGC TGTTTGCA TATGTCGCGT chr3R:5319212-5319332 52 7.46e-05 gaaaaaaaGT TGTTTGCA AACAAAAAAG chr3L:5974688-5974808 84 7.46e-05 ATATGCGCCT TGTTTGCA TATAGAAATG chr2R:7989840-7989960 4 7.46e-05 GGC TGTTTGCA AGCCAACCCT chrX:3704496-3704616 92 7.46e-05 ATCAGAGTTG TGTTTGCA CTAGTGGGCA chrX:20506050-20506170 53 7.46e-05 GATTTCAATA TGTTTGCA CTTCCCATTT chr3L:4272365-4272485 76 7.46e-05 GGAATCGAGC TGTTTGCA TTCCTCATTC chr3R:8308808-8308928 8 8.74e-05 ACGCTAT TGTTTGCG CTGCAAACAT chr2L:8554462-8554582 109 8.74e-05 GAAGCCACTG TGTTTGCG ATTG chr2R:22540022-22540142 42 8.74e-05 TAAATTTCCA TGTTTGCG CACTTAACAG chr2L:9775351-9775471 93 8.74e-05 AATAGGAAAT TGTTTGCG GCAAATATAT chr2L:1108387-1108507 76 1.08e-04 AGTTTTAATT TATTTGCC AGTTACTACA chr3R:4992530-4992650 11 1.41e-04 TGATGCGGGC TGTTTGTT CCCAGCGCCC chr2R:15565337-15565457 23 1.41e-04 GAAAACCAAT TGTTTGTT GGGTAAATAA chr2R:6524892-6525012 80 1.41e-04 CGAATTGGTG TGTTTGTT AGATAAACAA chr3L:12606446-12606566 71 1.41e-04 TTTATGAATG TGTTTGTT CTTGCTGGTG chr3L:8925819-8925939 59 1.41e-04 GTTATTATGT TGTTTGTT CGTTGTTTAT chr2R:20126189-20126309 92 1.41e-04 AAGTATTGTG TGTTTGTT TATTGAATTT chr3R:6667428-6667548 75 1.41e-04 TACTGTTTTC TGTTTGTT CTACTTGTGT chr2R:23176792-23176912 47 1.72e-04 TCTCAAAAAA TGTTTGTA CATCCTTAAT chr3R:10140469-10140589 110 1.72e-04 GGGTGTGTCA TGTTTGTA CTT chr4:225972-226092 18 1.72e-04 CACACatgca tgtttgta tatgcttgta chr3L:17659305-17659425 39 2.25e-04 AATAATTTGT TATTTGCT CTCCGGATCG chr2R:9309660-9309780 35 2.25e-04 TCATTTGGTT TGTTTGTG GCTCTATTTA chr2R:11469598-11469718 111 2.25e-04 TATTTAATGC TATTTGCT TA chr2R:22700673-22700793 97 2.25e-04 CTCCTTGTAA TATTTGCT TTACATCCGC chr3R:29541514-29541634 81 2.25e-04 GTGCTGCTTA TGTTTGTG TATATATTCT chrX:17582786-17582906 67 2.25e-04 TGCCAACCAT TATTTGCT TAGTGGTAAA chr3R:11351486-11351606 36 2.25e-04 TTACAGTTCG TATTTGCT CTTATCGACA chr2L:10552912-10553032 8 2.57e-04 GTTTACA TATTTGTC GATAAGGTTA chr3R:24809686-24809806 94 2.57e-04 TTTTTATAAA TATTTGTC ATTACCGCCA chr3L:3390729-3390849 112 2.57e-04 CGTCAACAAT TATTTGTC C chr3R:19847933-19848053 99 2.57e-04 CAGCTACAAC TATTTGTC AACCTGTTGA chr2L:6700952-6701072 46 2.89e-04 ACACGATCGC TATTTGCA CAATCCGTGT chr2L:1614158-1614278 81 2.89e-04 TGCTGCCAGC TATTTGCA TTCTCAGAGT chr3R:10598345-10598465 55 2.89e-04 ACAATGTCAA TATTTGCA TTGGCCAAGA chr2R:20601144-20601264 20 3.09e-04 CTATCAATGT TATTTGCG CTTAGTATTC chr2L:10276947-10277067 76 3.09e-04 AATCATTGAT TATTTGCG TCGGACGCGG chr3R:27209156-27209276 79 3.22e-04 TCTGGCCCGC TGTTTGGC CAAACAGTTA chrX:6375762-6375882 47 3.73e-04 AAAAAATAGT TATTTGTT GCTGTACTTT chr3L:14780324-14780444 99 3.73e-04 CCCTCTTAAT TATTTGTT TTTGTTTTGC chr3L:20389131-20389251 107 3.73e-04 TGGTGGTCTG TATTTGTT TTCGGT chr3R:10150717-10150837 30 3.73e-04 AGCCGCCTCT TATTTGTT TGGCTTTAAA chr2L:9525074-9525194 38 3.73e-04 CTCGTTCACC TATTTGTT TTATTTTTCG chr3R:20263842-20263962 44 4.22e-04 CGTCTGGCTG TATTTGTA TCTCAAAGTT chr2L:6283419-6283539 9 4.22e-04 TAAATAGG TATTTGTA AAGTAACCAT chr3R:27138086-27138206 64 4.22e-04 CAACTTGCTT TATTTGTA CAAGAGGTGT chrX:6614421-6614541 47 4.22e-04 ttcgtattcg tatttgta ttTACCTATC chr3R:31596336-31596456 90 4.54e-04 TTTATAGCAT TATTTGTG TAATCGGGTC chr2R:10303698-10303818 82 4.54e-04 GCCGTGAAAA TATTTGTG CAGCTGCCCC chr2R:15351257-15351377 87 4.74e-04 GTTCATACCA TGTTTGGT TTACGATCAA chrX:16644917-16645037 23 4.93e-04 ACCATCGTCT TGTTTGGA TTTCGGCCCA chr3L:10845158-10845278 29 5.25e-04 TAGTTTGAAA TATTTGGC CCTTTTGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTGYH MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7031119-7031239 1.3e-05 69_[+1]_43 chr3R:15676360-15676480 1.3e-05 74_[+1]_38 chr2L:7043181-7043301 1.3e-05 38_[+1]_74 chr2L:6700745-6700865 1.3e-05 101_[+1]_11 chrX:11660608-11660728 1.3e-05 86_[+1]_26 chr2L:21037879-21037999 1.3e-05 17_[+1]_95 chr3L:15715924-15716044 1.3e-05 8_[+1]_104 chr3L:8018667-8018787 1.3e-05 89_[+1]_23 chr2L:16476540-16476660 1.3e-05 40_[+1]_72 chr3L:5807502-5807622 1.3e-05 11_[+1]_101 chrX:6994637-6994757 1.3e-05 109_[+1]_3 chr3R:5107005-5107125 1.3e-05 56_[+1]_56 chr2L:22036943-22037063 1.3e-05 37_[+1]_75 chr3R:30919094-30919214 1.3e-05 18_[+1]_94 chr2R:7474298-7474418 3.4e-05 57_[+1]_55 chr2R:9006899-9007019 3.4e-05 33_[+1]_79 chr3R:20276108-20276228 3.4e-05 81_[+1]_31 chr2R:9406810-9406930 3.4e-05 74_[+1]_38 chr2R:19413324-19413444 3.4e-05 63_[+1]_49 chr2L:16520088-16520208 3.4e-05 70_[+1]_42 chrX:21241975-21242095 5.5e-05 108_[+1]_4 chr3R:9870089-9870209 5.5e-05 30_[+1]_82 chr2R:22657051-22657171 5.5e-05 90_[+1]_22 chr2R:22387709-22387829 5.5e-05 79_[+1]_33 chr2R:18609027-18609147 5.5e-05 44_[+1]_68 chr3L:4615215-4615335 5.5e-05 17_[+1]_95 chr3L:2489619-2489739 7.5e-05 21_[+1]_91 chr3R:5319212-5319332 7.5e-05 51_[+1]_61 chr3L:5974688-5974808 7.5e-05 83_[+1]_29 chr2R:7989840-7989960 7.5e-05 3_[+1]_109 chrX:3704496-3704616 7.5e-05 91_[+1]_21 chrX:20506050-20506170 7.5e-05 52_[+1]_60 chr3L:4272365-4272485 7.5e-05 75_[+1]_37 chr3R:8308808-8308928 8.7e-05 7_[+1]_105 chr2L:8554462-8554582 8.7e-05 108_[+1]_4 chr2R:22540022-22540142 8.7e-05 41_[+1]_71 chr2L:9775351-9775471 8.7e-05 92_[+1]_20 chr2L:1108387-1108507 0.00011 75_[+1]_37 chr3R:4992530-4992650 0.00014 10_[+1]_102 chr2R:15565337-15565457 0.00014 22_[+1]_90 chr2R:6524892-6525012 0.00014 79_[+1]_33 chr3L:12606446-12606566 0.00014 70_[+1]_42 chr3L:8925819-8925939 0.00014 58_[+1]_54 chr2R:20126189-20126309 0.00014 91_[+1]_21 chr3R:6667428-6667548 0.00014 74_[+1]_38 chr2R:23176792-23176912 0.00017 46_[+1]_66 chr3R:10140469-10140589 0.00017 109_[+1]_3 chr4:225972-226092 0.00017 17_[+1]_95 chr3L:17659305-17659425 0.00022 38_[+1]_74 chr2R:9309660-9309780 0.00022 34_[+1]_78 chr2R:11469598-11469718 0.00022 110_[+1]_2 chr2R:22700673-22700793 0.00022 96_[+1]_16 chr3R:29541514-29541634 0.00022 80_[+1]_32 chrX:17582786-17582906 0.00022 66_[+1]_46 chr3R:11351486-11351606 0.00022 35_[+1]_77 chr2L:10552912-10553032 0.00026 7_[+1]_105 chr3R:24809686-24809806 0.00026 93_[+1]_19 chr3L:3390729-3390849 0.00026 111_[+1]_1 chr3R:19847933-19848053 0.00026 98_[+1]_14 chr2L:6700952-6701072 0.00029 45_[+1]_67 chr2L:1614158-1614278 0.00029 80_[+1]_32 chr3R:10598345-10598465 0.00029 54_[+1]_58 chr2R:20601144-20601264 0.00031 19_[+1]_93 chr2L:10276947-10277067 0.00031 75_[+1]_37 chr3R:27209156-27209276 0.00032 78_[+1]_34 chrX:6375762-6375882 0.00037 46_[+1]_66 chr3L:14780324-14780444 0.00037 98_[+1]_14 chr3L:20389131-20389251 0.00037 106_[+1]_6 chr3R:10150717-10150837 0.00037 29_[+1]_83 chr2L:9525074-9525194 0.00037 37_[+1]_75 chr3R:20263842-20263962 0.00042 43_[+1]_69 chr2L:6283419-6283539 0.00042 8_[+1]_104 chr3R:27138086-27138206 0.00042 63_[+1]_49 chrX:6614421-6614541 0.00042 46_[+1]_66 chr3R:31596336-31596456 0.00045 89_[+1]_23 chr2R:10303698-10303818 0.00045 81_[+1]_31 chr2R:15351257-15351377 0.00047 86_[+1]_26 chrX:16644917-16645037 0.00049 22_[+1]_90 chr3L:10845158-10845278 0.00053 28_[+1]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTGYH MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TRTTTGYH width=8 seqs=79 chr2R:7031119-7031239 ( 70) TGTTTGCC 1 chr3R:15676360-15676480 ( 75) TGTTTGCC 1 chr2L:7043181-7043301 ( 39) TGTTTGCC 1 chr2L:6700745-6700865 ( 102) TGTTTGCC 1 chrX:11660608-11660728 ( 87) TGTTTGCC 1 chr2L:21037879-21037999 ( 18) TGTTTGCC 1 chr3L:15715924-15716044 ( 9) TGTTTGCC 1 chr3L:8018667-8018787 ( 90) TGTTTGCC 1 chr2L:16476540-16476660 ( 41) TGTTTGCC 1 chr3L:5807502-5807622 ( 12) TGTTTGCC 1 chrX:6994637-6994757 ( 110) TGTTTGCC 1 chr3R:5107005-5107125 ( 57) TGTTTGCC 1 chr2L:22036943-22037063 ( 38) TGTTTGCC 1 chr3R:30919094-30919214 ( 19) TGTTTGCC 1 chr2R:7474298-7474418 ( 58) TGTTTGCT 1 chr2R:9006899-9007019 ( 34) TGTTTGCT 1 chr3R:20276108-20276228 ( 82) TGTTTGCT 1 chr2R:9406810-9406930 ( 75) TGTTTGCT 1 chr2R:19413324-19413444 ( 64) TGTTTGCT 1 chr2L:16520088-16520208 ( 71) TGTTTGCT 1 chrX:21241975-21242095 ( 109) TGTTTGTC 1 chr3R:9870089-9870209 ( 31) TGTTTGTC 1 chr2R:22657051-22657171 ( 91) TGTTTGTC 1 chr2R:22387709-22387829 ( 80) TGTTTGTC 1 chr2R:18609027-18609147 ( 45) TGTTTGTC 1 chr3L:4615215-4615335 ( 18) TGTTTGTC 1 chr3L:2489619-2489739 ( 22) TGTTTGCA 1 chr3R:5319212-5319332 ( 52) TGTTTGCA 1 chr3L:5974688-5974808 ( 84) TGTTTGCA 1 chr2R:7989840-7989960 ( 4) TGTTTGCA 1 chrX:3704496-3704616 ( 92) TGTTTGCA 1 chrX:20506050-20506170 ( 53) TGTTTGCA 1 chr3L:4272365-4272485 ( 76) TGTTTGCA 1 chr3R:8308808-8308928 ( 8) TGTTTGCG 1 chr2L:8554462-8554582 ( 109) TGTTTGCG 1 chr2R:22540022-22540142 ( 42) TGTTTGCG 1 chr2L:9775351-9775471 ( 93) TGTTTGCG 1 chr2L:1108387-1108507 ( 76) TATTTGCC 1 chr3R:4992530-4992650 ( 11) TGTTTGTT 1 chr2R:15565337-15565457 ( 23) TGTTTGTT 1 chr2R:6524892-6525012 ( 80) TGTTTGTT 1 chr3L:12606446-12606566 ( 71) TGTTTGTT 1 chr3L:8925819-8925939 ( 59) TGTTTGTT 1 chr2R:20126189-20126309 ( 92) TGTTTGTT 1 chr3R:6667428-6667548 ( 75) TGTTTGTT 1 chr2R:23176792-23176912 ( 47) TGTTTGTA 1 chr3R:10140469-10140589 ( 110) TGTTTGTA 1 chr4:225972-226092 ( 18) TGTTTGTA 1 chr3L:17659305-17659425 ( 39) TATTTGCT 1 chr2R:9309660-9309780 ( 35) TGTTTGTG 1 chr2R:11469598-11469718 ( 111) TATTTGCT 1 chr2R:22700673-22700793 ( 97) TATTTGCT 1 chr3R:29541514-29541634 ( 81) TGTTTGTG 1 chrX:17582786-17582906 ( 67) TATTTGCT 1 chr3R:11351486-11351606 ( 36) TATTTGCT 1 chr2L:10552912-10553032 ( 8) TATTTGTC 1 chr3R:24809686-24809806 ( 94) TATTTGTC 1 chr3L:3390729-3390849 ( 112) TATTTGTC 1 chr3R:19847933-19848053 ( 99) TATTTGTC 1 chr2L:6700952-6701072 ( 46) TATTTGCA 1 chr2L:1614158-1614278 ( 81) TATTTGCA 1 chr3R:10598345-10598465 ( 55) TATTTGCA 1 chr2R:20601144-20601264 ( 20) TATTTGCG 1 chr2L:10276947-10277067 ( 76) TATTTGCG 1 chr3R:27209156-27209276 ( 79) TGTTTGGC 1 chrX:6375762-6375882 ( 47) TATTTGTT 1 chr3L:14780324-14780444 ( 99) TATTTGTT 1 chr3L:20389131-20389251 ( 107) TATTTGTT 1 chr3R:10150717-10150837 ( 30) TATTTGTT 1 chr2L:9525074-9525194 ( 38) TATTTGTT 1 chr3R:20263842-20263962 ( 44) TATTTGTA 1 chr2L:6283419-6283539 ( 9) TATTTGTA 1 chr3R:27138086-27138206 ( 64) TATTTGTA 1 chrX:6614421-6614541 ( 47) TATTTGTA 1 chr3R:31596336-31596456 ( 90) TATTTGTG 1 chr2R:10303698-10303818 ( 82) TATTTGTG 1 chr2R:15351257-15351377 ( 87) TGTTTGGT 1 chrX:16644917-16645037 ( 23) TGTTTGGA 1 chr3L:10845158-10845278 ( 29) TATTTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTGYH MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3123 E= 1.3e-021 -1295 -1295 -1295 169 18 -1295 179 -1295 -1295 -1295 -1295 169 -1295 -1295 -1295 169 -1295 -1295 -1295 169 -1295 -1295 239 -1295 -1295 143 -191 43 -40 79 -59 -3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTGYH MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 1.3e-021 0.000000 0.000000 0.000000 1.000000 0.341772 0.000000 0.658228 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.531646 0.050633 0.417722 0.227848 0.341772 0.126582 0.303797 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TRTTTGYH MEME-1 regular expression -------------------------------------------------------------------------------- T[GA]TTTG[CT][CTA] -------------------------------------------------------------------------------- Time 8.21 secs. ******************************************************************************** ******************************************************************************** MOTIF WRYAAACA MEME-2 width = 8 sites = 79 llr = 595 E-value = 1.2e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif WRYAAACA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 54:a8a:a pos.-specific C ::7:2:9: probability G 26:::::: matrix T 3:3:::1: bits 2.4 2.2 1.9 1.7 * *** Relative 1.4 * *** Entropy 1.2 ******* (10.9 bits) 1.0 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGCAAACA consensus TAT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRYAAACA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:11541198-11541318 37 1.85e-05 ATGGGGGCAC AGCAAACA AAACTGACAT chr3R:6504553-6504673 6 1.85e-05 TGGCC AGCAAACA GAAGGCCCAT chr2R:22387709-22387829 64 1.85e-05 TTCTACATCT AGCAAACA ACAATATTTG chr3R:21856774-21856894 9 1.85e-05 GCATTGCA AGCAAACA TATGATGAAT chr3L:20944341-20944461 104 1.85e-05 GCTGAGTAAG AGCAAACA AACTgggat chr2R:22525212-22525332 25 1.85e-05 GGGGTGCACG AGCAAACA ACTGCGAAAC chrX:17473415-17473535 72 1.85e-05 atttaCACAC AGCAAACA GCAACGACAC chr3L:4615215-4615335 61 1.85e-05 TTGCTTGCTG AGCAAACA TGGTAGATAA chr2R:7474298-7474418 111 3.76e-05 ACTTAAACTA TGCAAACA CG chr3R:27209156-27209276 18 3.76e-05 AGCCACAAAT TGCAAACA AAAACAAAGG chr3R:8308808-8308928 17 3.76e-05 TTGTTTGCGC TGCAAACA TTTAAACAAG chr2L:2494660-2494780 54 3.76e-05 TGCGCCCTTG TGCAAACA CACGGAAAAC chr3L:14194226-14194346 16 3.76e-05 TGAAATGCAC TGCAAACA CACGAAAAGA chr2R:23180956-23181076 60 3.76e-05 ATTTGTAAAA TGCAAACA GAACACGCAA chr3R:25885286-25885406 37 4.93e-05 CGATAAGGTC GGCAAACA AAATACTTAT chrX:6614421-6614541 95 4.93e-05 GTAAACACAC GGCAAACA ACTTCATTTG chr2R:11175526-11175646 32 4.93e-05 Gcacacaaaa ggcaaaca aacaaacagg chr2R:18609027-18609147 83 4.93e-05 TTGTTGAAGA GGCAAACA AACACGGTGA chr2R:22511622-22511742 9 7.85e-05 GTTGGAAA AACAAACA GAGGAGCTGC chr3R:5319212-5319332 15 7.85e-05 ATATGaacac aacaaaca ctcataaaaa chr3L:21007862-21007982 91 7.85e-05 ACGGACAAAT AACAAACA AAGCAAAAAT chr2L:16677124-16677244 95 7.85e-05 ATGTGCTCTA AACAAACA AACATGTAAT chr3L:3518999-3519119 81 7.85e-05 AAATAAAATA AACAAACA TCATGTTTTT chr2L:7572024-7572144 62 7.85e-05 TAGCCGGGCT AACAAACA TCAACAGCTG chrX:5917201-5917321 36 7.85e-05 GGAAAATATT AACAAACA CATGAGCCTA chr3L:10858609-10858729 50 7.85e-05 ATGTATTCCA AACAAACA ACGAAGCGCA chr2L:9775351-9775471 3 7.85e-05 aa aacaaaca aTTATCCACA chr3R:26130695-26130815 40 1.07e-04 CCGACCATAA AGTAAACA AGTCATGGCT chr3R:24809686-24809806 49 1.07e-04 AATGTCAAAA AGTAAACA CATCACCCAC chr3L:14780324-14780444 60 1.07e-04 GGGAAATGCA AGTAAACA ACGCTATCAC chr3R:20263842-20263962 76 1.07e-04 GTGTATCTAT AGTAAACA AAAGCGCGTA chr2L:1462207-1462327 77 1.07e-04 TAAAGTCAAC AGTAAACA TTCCTTAGAT chr3L:17993439-17993559 68 1.07e-04 ACCAGAAGAA AGTAAACA AGAGAGAGCA chr3L:10845158-10845278 91 1.20e-04 GTGCAAAATA AGCACACA TTTTCGATGG chr3R:22596590-22596710 19 1.20e-04 cacacacaca agcacaca cacacacacG chrX:16644917-16645037 1 1.20e-04 . AGCACACA ACACACCATC chr2L:3852271-3852391 34 1.20e-04 ATATTTCTAA AGCACACA GATACTTGAT chr2L:20945363-20945483 59 1.50e-04 ACAAAAAATA TACAAACA TATCCATATA chr3R:6468141-6468261 72 1.50e-04 TTTAACCAAA TACAAACA TCATTATCTA chr2R:7031119-7031239 19 1.98e-04 GAGTTGGGGT GACAAACA AACGTGGCTC chr2R:17514131-17514251 99 1.98e-04 GCCAAATTTG TGTAAACA TCGATGGTAT chr3L:14956443-14956563 85 1.98e-04 CGCAGAGGGA GACAAACA GAATGCATTA chr2L:21037879-21037999 27 1.98e-04 ATGTTTGCCA TGTAAACA AATAAACAAA chr3L:5807502-5807622 110 1.98e-04 CAATAGCTGT TGTAAACA CTT chr3L:11273764-11273884 67 1.98e-04 TATAACCAAA GACAAACA ACATTTGTTG chr3R:30767243-30767363 64 1.98e-04 GTTTATCGAG TGTAAACA AAGCATAAAA chr3R:13817595-13817715 45 1.98e-04 TTGTTTTCAG TGTAAACA ACAGCACCCC chrX:5420744-5420864 9 2.29e-04 AGCCTTTG TGCACACA AAAAAAAAAT chr2R:11639703-11639823 96 2.29e-04 AAAGTATGTA TGCACACA TGGAGACACA chr3L:21130977-21131097 7 2.29e-04 ATCAGA GGTAAACA AACGAGGAAA chr2R:11628145-11628265 92 2.29e-04 GGGGCGCTGC TGCACACA AAATAACCAG chr2R:9406810-9406930 94 2.29e-04 TTGGGTGGAA GGTAAACA ACAACAATGA chr2R:14494777-14494897 67 2.29e-04 TTGTTGACTG GGTAAACA TCGAAGAAAG chr2R:12729948-12730068 53 2.29e-04 CACGCACAGA TGCACACA TGCAGATGCA chr2L:6700745-6700865 20 2.82e-04 TTGATTACAA AATAAACA GAGATAATGC chr2L:16476540-16476660 99 2.82e-04 GCGATGGGCA AATAAACA CAGGTAGCAA chr2R:6524892-6525012 30 2.82e-04 TACAAATCAA AATAAACA TTCTATCCGT chr3R:24360098-24360218 2 2.82e-04 T AATAAACA ATTGAACGTG chr3L:16385568-16385688 48 2.82e-04 ACAAACGATC AATAAACA AAGTCCTATT chr3R:31309410-31309530 75 2.82e-04 AAGCTGCACA AATAAACA CGCAGAGCGG chr3R:15670663-15670783 56 3.01e-04 ATTGCAAGAC AACACACA CAGATACTGT chr2R:13990404-13990524 51 3.01e-04 gcacacacgt aacacaca cacacacaga chr3L:2489619-2489739 109 3.96e-04 TGGAAACCGC AGCAAATA TTTA chr2R:7989840-7989960 75 3.96e-04 GCGTGCATTT TATAAACA ACATTTCGGT chr2R:14906376-14906496 82 3.96e-04 GTTGTATGAG AGCAAATA GAGAAATTTA chr2L:11394288-11394408 45 3.96e-04 GGTAATTAAT TATAAACA GCATATTATA chr4:225972-226092 45 3.96e-04 atgtatgtat AGCAAATA TATAATTTTA chr2R:9006899-9007019 68 4.45e-04 TGCCCAACAA GATAAACA CAGATTCCAA chr3L:13068381-13068501 94 4.45e-04 AAACCTTTTG GATAAACA TATTTTTGAT chr2R:23979551-23979671 52 4.45e-04 CACACACAGA TACACACA TGCACACGAC chr3R:13885170-13885290 26 4.45e-04 TCCTTAAACT GATAAACA TGTTTCATTG chr3R:4992530-4992650 50 4.77e-04 TTGATTTATT TGTACACA GTTTTATGAT chr3R:21203971-21204091 100 4.77e-04 AAACAACAAA TGTACACA GAAGCTCTTT chr3L:17659305-17659425 75 5.19e-04 GTGGCACATG TGCAAATA TGTACCAAGC chr2R:8242630-8242750 46 5.19e-04 TTGTTTACAA TGCAAATA AATTGAGATC chr2R:21134537-21134657 66 5.67e-04 TATATATGAA GGCAAATA TGTGCCACAC chr3L:5974688-5974808 64 6.13e-04 TGGAATCAAA AACAAATA ACATATGCGC chrX:6375762-6375882 18 6.13e-04 CAGAGCACTG AACAAATA TCTGAAAAAT chr2L:974249-974369 69 6.13e-04 CTGACAGCAA AACAAATA ACGGGGGTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRYAAACA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:11541198-11541318 1.9e-05 36_[+2]_76 chr3R:6504553-6504673 1.9e-05 5_[+2]_107 chr2R:22387709-22387829 1.9e-05 63_[+2]_49 chr3R:21856774-21856894 1.9e-05 8_[+2]_104 chr3L:20944341-20944461 1.9e-05 103_[+2]_9 chr2R:22525212-22525332 1.9e-05 24_[+2]_88 chrX:17473415-17473535 1.9e-05 71_[+2]_41 chr3L:4615215-4615335 1.9e-05 60_[+2]_52 chr2R:7474298-7474418 3.8e-05 110_[+2]_2 chr3R:27209156-27209276 3.8e-05 17_[+2]_95 chr3R:8308808-8308928 3.8e-05 16_[+2]_96 chr2L:2494660-2494780 3.8e-05 53_[+2]_59 chr3L:14194226-14194346 3.8e-05 15_[+2]_97 chr2R:23180956-23181076 3.8e-05 59_[+2]_53 chr3R:25885286-25885406 4.9e-05 36_[+2]_76 chrX:6614421-6614541 4.9e-05 94_[+2]_18 chr2R:11175526-11175646 4.9e-05 31_[+2]_81 chr2R:18609027-18609147 4.9e-05 82_[+2]_30 chr2R:22511622-22511742 7.8e-05 8_[+2]_104 chr3R:5319212-5319332 7.8e-05 14_[+2]_98 chr3L:21007862-21007982 7.8e-05 90_[+2]_22 chr2L:16677124-16677244 7.8e-05 94_[+2]_18 chr3L:3518999-3519119 7.8e-05 80_[+2]_32 chr2L:7572024-7572144 7.8e-05 61_[+2]_51 chrX:5917201-5917321 7.8e-05 35_[+2]_77 chr3L:10858609-10858729 7.8e-05 49_[+2]_63 chr2L:9775351-9775471 7.8e-05 2_[+2]_110 chr3R:26130695-26130815 0.00011 39_[+2]_73 chr3R:24809686-24809806 0.00011 48_[+2]_64 chr3L:14780324-14780444 0.00011 59_[+2]_53 chr3R:20263842-20263962 0.00011 75_[+2]_37 chr2L:1462207-1462327 0.00011 76_[+2]_36 chr3L:17993439-17993559 0.00011 67_[+2]_45 chr3L:10845158-10845278 0.00012 90_[+2]_22 chr3R:22596590-22596710 0.00012 18_[+2]_94 chrX:16644917-16645037 0.00012 [+2]_112 chr2L:3852271-3852391 0.00012 33_[+2]_79 chr2L:20945363-20945483 0.00015 58_[+2]_54 chr3R:6468141-6468261 0.00015 71_[+2]_41 chr2R:7031119-7031239 0.0002 18_[+2]_94 chr2R:17514131-17514251 0.0002 98_[+2]_14 chr3L:14956443-14956563 0.0002 84_[+2]_28 chr2L:21037879-21037999 0.0002 26_[+2]_86 chr3L:5807502-5807622 0.0002 109_[+2]_3 chr3L:11273764-11273884 0.0002 66_[+2]_46 chr3R:30767243-30767363 0.0002 63_[+2]_49 chr3R:13817595-13817715 0.0002 44_[+2]_68 chrX:5420744-5420864 0.00023 8_[+2]_104 chr2R:11639703-11639823 0.00023 95_[+2]_17 chr3L:21130977-21131097 0.00023 6_[+2]_106 chr2R:11628145-11628265 0.00023 91_[+2]_21 chr2R:9406810-9406930 0.00023 93_[+2]_19 chr2R:14494777-14494897 0.00023 66_[+2]_46 chr2R:12729948-12730068 0.00023 52_[+2]_60 chr2L:6700745-6700865 0.00028 19_[+2]_93 chr2L:16476540-16476660 0.00028 98_[+2]_14 chr2R:6524892-6525012 0.00028 29_[+2]_83 chr3R:24360098-24360218 0.00028 1_[+2]_111 chr3L:16385568-16385688 0.00028 47_[+2]_65 chr3R:31309410-31309530 0.00028 74_[+2]_38 chr3R:15670663-15670783 0.0003 55_[+2]_57 chr2R:13990404-13990524 0.0003 50_[+2]_62 chr3L:2489619-2489739 0.0004 108_[+2]_4 chr2R:7989840-7989960 0.0004 74_[+2]_38 chr2R:14906376-14906496 0.0004 81_[+2]_31 chr2L:11394288-11394408 0.0004 44_[+2]_68 chr4:225972-226092 0.0004 44_[+2]_68 chr2R:9006899-9007019 0.00045 67_[+2]_45 chr3L:13068381-13068501 0.00045 93_[+2]_19 chr2R:23979551-23979671 0.00045 51_[+2]_61 chr3R:13885170-13885290 0.00045 25_[+2]_87 chr3R:4992530-4992650 0.00048 49_[+2]_63 chr3R:21203971-21204091 0.00048 99_[+2]_13 chr3L:17659305-17659425 0.00052 74_[+2]_38 chr2R:8242630-8242750 0.00052 45_[+2]_67 chr2R:21134537-21134657 0.00057 65_[+2]_47 chr3L:5974688-5974808 0.00061 63_[+2]_49 chrX:6375762-6375882 0.00061 17_[+2]_95 chr2L:974249-974369 0.00061 68_[+2]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRYAAACA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WRYAAACA width=8 seqs=79 chr2R:11541198-11541318 ( 37) AGCAAACA 1 chr3R:6504553-6504673 ( 6) AGCAAACA 1 chr2R:22387709-22387829 ( 64) AGCAAACA 1 chr3R:21856774-21856894 ( 9) AGCAAACA 1 chr3L:20944341-20944461 ( 104) AGCAAACA 1 chr2R:22525212-22525332 ( 25) AGCAAACA 1 chrX:17473415-17473535 ( 72) AGCAAACA 1 chr3L:4615215-4615335 ( 61) AGCAAACA 1 chr2R:7474298-7474418 ( 111) TGCAAACA 1 chr3R:27209156-27209276 ( 18) TGCAAACA 1 chr3R:8308808-8308928 ( 17) TGCAAACA 1 chr2L:2494660-2494780 ( 54) TGCAAACA 1 chr3L:14194226-14194346 ( 16) TGCAAACA 1 chr2R:23180956-23181076 ( 60) TGCAAACA 1 chr3R:25885286-25885406 ( 37) GGCAAACA 1 chrX:6614421-6614541 ( 95) GGCAAACA 1 chr2R:11175526-11175646 ( 32) GGCAAACA 1 chr2R:18609027-18609147 ( 83) GGCAAACA 1 chr2R:22511622-22511742 ( 9) AACAAACA 1 chr3R:5319212-5319332 ( 15) AACAAACA 1 chr3L:21007862-21007982 ( 91) AACAAACA 1 chr2L:16677124-16677244 ( 95) AACAAACA 1 chr3L:3518999-3519119 ( 81) AACAAACA 1 chr2L:7572024-7572144 ( 62) AACAAACA 1 chrX:5917201-5917321 ( 36) AACAAACA 1 chr3L:10858609-10858729 ( 50) AACAAACA 1 chr2L:9775351-9775471 ( 3) AACAAACA 1 chr3R:26130695-26130815 ( 40) AGTAAACA 1 chr3R:24809686-24809806 ( 49) AGTAAACA 1 chr3L:14780324-14780444 ( 60) AGTAAACA 1 chr3R:20263842-20263962 ( 76) AGTAAACA 1 chr2L:1462207-1462327 ( 77) AGTAAACA 1 chr3L:17993439-17993559 ( 68) AGTAAACA 1 chr3L:10845158-10845278 ( 91) AGCACACA 1 chr3R:22596590-22596710 ( 19) AGCACACA 1 chrX:16644917-16645037 ( 1) AGCACACA 1 chr2L:3852271-3852391 ( 34) AGCACACA 1 chr2L:20945363-20945483 ( 59) TACAAACA 1 chr3R:6468141-6468261 ( 72) TACAAACA 1 chr2R:7031119-7031239 ( 19) GACAAACA 1 chr2R:17514131-17514251 ( 99) TGTAAACA 1 chr3L:14956443-14956563 ( 85) GACAAACA 1 chr2L:21037879-21037999 ( 27) TGTAAACA 1 chr3L:5807502-5807622 ( 110) TGTAAACA 1 chr3L:11273764-11273884 ( 67) GACAAACA 1 chr3R:30767243-30767363 ( 64) TGTAAACA 1 chr3R:13817595-13817715 ( 45) TGTAAACA 1 chrX:5420744-5420864 ( 9) TGCACACA 1 chr2R:11639703-11639823 ( 96) TGCACACA 1 chr3L:21130977-21131097 ( 7) GGTAAACA 1 chr2R:11628145-11628265 ( 92) TGCACACA 1 chr2R:9406810-9406930 ( 94) GGTAAACA 1 chr2R:14494777-14494897 ( 67) GGTAAACA 1 chr2R:12729948-12730068 ( 53) TGCACACA 1 chr2L:6700745-6700865 ( 20) AATAAACA 1 chr2L:16476540-16476660 ( 99) AATAAACA 1 chr2R:6524892-6525012 ( 30) AATAAACA 1 chr3R:24360098-24360218 ( 2) AATAAACA 1 chr3L:16385568-16385688 ( 48) AATAAACA 1 chr3R:31309410-31309530 ( 75) AATAAACA 1 chr3R:15670663-15670783 ( 56) AACACACA 1 chr2R:13990404-13990524 ( 51) AACACACA 1 chr3L:2489619-2489739 ( 109) AGCAAATA 1 chr2R:7989840-7989960 ( 75) TATAAACA 1 chr2R:14906376-14906496 ( 82) AGCAAATA 1 chr2L:11394288-11394408 ( 45) TATAAACA 1 chr4:225972-226092 ( 45) AGCAAATA 1 chr2R:9006899-9007019 ( 68) GATAAACA 1 chr3L:13068381-13068501 ( 94) GATAAACA 1 chr2R:23979551-23979671 ( 52) TACACACA 1 chr3R:13885170-13885290 ( 26) GATAAACA 1 chr3R:4992530-4992650 ( 50) TGTACACA 1 chr3R:21203971-21204091 ( 100) TGTACACA 1 chr3L:17659305-17659425 ( 75) TGCAAATA 1 chr2R:8242630-8242750 ( 46) TGCAAATA 1 chr2R:21134537-21134657 ( 66) GGCAAATA 1 chr3L:5974688-5974808 ( 64) AACAAATA 1 chrX:6375762-6375882 ( 18) AACAAATA 1 chr2L:974249-974369 ( 69) AACAAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRYAAACA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.94656 E= 1.2e-009 78 -1295 -11 -3 38 -1295 167 -1295 -1295 173 -1295 14 173 -1295 -1295 -1295 147 -27 -1295 -1295 173 -1295 -1295 -1295 -1295 216 -1295 -144 173 -1295 -1295 -1295 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRYAAACA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 1.2e-009 0.518987 0.000000 0.177215 0.303797 0.392405 0.000000 0.607595 0.000000 0.000000 0.658228 0.000000 0.341772 1.000000 0.000000 0.000000 0.000000 0.835443 0.164557 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.886076 0.000000 0.113924 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WRYAAACA MEME-2 regular expression -------------------------------------------------------------------------------- [AT][GA][CT]AAACA -------------------------------------------------------------------------------- Time 14.36 secs. ******************************************************************************** ******************************************************************************** MOTIF YTGTTGAC MEME-3 width = 8 sites = 20 llr = 189 E-value = 2.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTGTTGAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::::7: pos.-specific C 5::::::a probability G ::a:2a3: matrix T 6a:a8::: bits 2.4 * * * 2.2 * * * 1.9 * * * 1.7 *** * * Relative 1.4 *** * * Entropy 1.2 ***** * (13.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGTTGAC consensus C G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGTTGAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:20897110-20897230 73 1.28e-05 AGAGGCGCCG CTGTTGAC AGAGAGTTCA chr3R:19472427-19472547 55 1.28e-05 CTGGTGCTGT CTGTTGAC CCACAATAAA chr3R:31793824-31793944 82 1.28e-05 ATTTATCGAA CTGTTGAC ATCCATCCGA chr2L:6283419-6283539 57 1.28e-05 TCAAACAATT CTGTTGAC CAAATAAAAA chr3R:19847933-19848053 110 1.28e-05 ATTTGTCAAC CTGTTGAC ATT chr4:225972-226092 108 1.28e-05 CCAAAGCAAG CTGTTGac atatg chr3R:27209156-27209276 40 3.29e-05 CAAAGGCCAG TTGTTGAC TCGACAATTC chrX:3188577-3188697 59 3.29e-05 AAGTTGACGC TTGTTGAC TTTTCGAATT chr2R:14494777-14494897 57 3.29e-05 TGCGGCGGGG TTGTTGAC TGGGTAAACA chr2R:23180956-23181076 42 3.29e-05 GCATTTGCCT TTGTTGAC ATTTGTAAAA chr2R:19413324-19413444 35 3.29e-05 CAGACAATTG TTGTTGAC ATTATGCAAT chr3L:10858609-10858729 23 3.29e-05 ATGCAATTGA TTGTTGAC AAAATTCCCA chr2L:7572024-7572144 77 4.10e-05 ACATCAACAG CTGTTGGC AGACCGAGTT chr2R:20601144-20601264 62 5.38e-05 TTCACGTTCT TTGTTGGC GCCTAAAAAT chrX:7333324-7333444 61 5.38e-05 CCCGCCAAAT TTGTTGGC CCCTCTATTT chr2R:14906376-14906496 30 5.38e-05 ATAAGCAAGG TTGTTGGC GTACTTTACT chr2R:12019255-12019375 44 6.17e-05 TTGATGTTTA CTGTGGAC ACTCAAATTA chr3L:3390729-3390849 32 7.41e-05 AGCAGGCGGC TTGTGGAC TGATGACAAC chrX:6614421-6614541 77 7.91e-05 TATCTTTTCG CTGTGGGC GTAAACACAC chrX:19164845-19164965 36 8.69e-05 ATTGGGTTGG TTGTGGGC GTCACGTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGTTGAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20897110-20897230 1.3e-05 72_[+3]_40 chr3R:19472427-19472547 1.3e-05 54_[+3]_58 chr3R:31793824-31793944 1.3e-05 81_[+3]_31 chr2L:6283419-6283539 1.3e-05 56_[+3]_56 chr3R:19847933-19848053 1.3e-05 109_[+3]_3 chr4:225972-226092 1.3e-05 107_[+3]_5 chr3R:27209156-27209276 3.3e-05 39_[+3]_73 chrX:3188577-3188697 3.3e-05 58_[+3]_54 chr2R:14494777-14494897 3.3e-05 56_[+3]_56 chr2R:23180956-23181076 3.3e-05 41_[+3]_71 chr2R:19413324-19413444 3.3e-05 34_[+3]_78 chr3L:10858609-10858729 3.3e-05 22_[+3]_90 chr2L:7572024-7572144 4.1e-05 76_[+3]_36 chr2R:20601144-20601264 5.4e-05 61_[+3]_51 chrX:7333324-7333444 5.4e-05 60_[+3]_52 chr2R:14906376-14906496 5.4e-05 29_[+3]_83 chr2R:12019255-12019375 6.2e-05 43_[+3]_69 chr3L:3390729-3390849 7.4e-05 31_[+3]_81 chrX:6614421-6614541 7.9e-05 76_[+3]_36 chrX:19164845-19164965 8.7e-05 35_[+3]_77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGTTGAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTGTTGAC width=8 seqs=20 chr2L:20897110-20897230 ( 73) CTGTTGAC 1 chr3R:19472427-19472547 ( 55) CTGTTGAC 1 chr3R:31793824-31793944 ( 82) CTGTTGAC 1 chr2L:6283419-6283539 ( 57) CTGTTGAC 1 chr3R:19847933-19848053 ( 110) CTGTTGAC 1 chr4:225972-226092 ( 108) CTGTTGAC 1 chr3R:27209156-27209276 ( 40) TTGTTGAC 1 chrX:3188577-3188697 ( 59) TTGTTGAC 1 chr2R:14494777-14494897 ( 57) TTGTTGAC 1 chr2R:23180956-23181076 ( 42) TTGTTGAC 1 chr2R:19413324-19413444 ( 35) TTGTTGAC 1 chr3L:10858609-10858729 ( 23) TTGTTGAC 1 chr2L:7572024-7572144 ( 77) CTGTTGGC 1 chr2R:20601144-20601264 ( 62) TTGTTGGC 1 chrX:7333324-7333444 ( 61) TTGTTGGC 1 chr2R:14906376-14906496 ( 30) TTGTTGGC 1 chr2R:12019255-12019375 ( 44) CTGTGGAC 1 chr3L:3390729-3390849 ( 32) TTGTGGAC 1 chrX:6614421-6614541 ( 77) CTGTGGGC 1 chrX:19164845-19164965 ( 36) TTGTGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGTTGAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7147 E= 2.0e+003 -1097 118 -1097 83 -1097 -1097 -1097 169 -1097 -1097 239 -1097 -1097 -1097 -1097 169 -1097 -1097 7 137 -1097 -1097 239 -1097 121 -1097 65 -1097 -1097 234 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGTTGAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 2.0e+003 0.000000 0.450000 0.000000 0.550000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.700000 0.000000 0.300000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTGTTGAC MEME-3 regular expression -------------------------------------------------------------------------------- [TC]TGT[TG]G[AG]C -------------------------------------------------------------------------------- Time 20.34 secs. ******************************************************************************** ******************************************************************************** MOTIF RGWGCWGC MEME-4 width = 8 sites = 33 llr = 280 E-value = 3.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGWGCWGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 5:5::6:: pos.-specific C 23::a::a probability G 371a:1a: matrix T ::4::3:: bits 2.4 ** ** 2.2 ** ** 1.9 ** ** 1.7 ** ** Relative 1.4 * ** ** Entropy 1.2 * ** ** (12.3 bits) 1.0 * ** ** 0.7 * ** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGAGCAGC consensus GCT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGWGCWGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:974249-974369 95 4.73e-06 TCTTATTGGC GGAGCAGC AGAGGCAGCG chr3R:23922315-23922435 91 1.22e-05 GGGAGGGGGT AGAGCAGC TGTTCGCCTT chrX:3188577-3188697 104 1.22e-05 AGAGATCTCG AGAGCAGC CCCTTTGAT chr3L:5926045-5926165 25 1.70e-05 CAATCTTTTA GGTGCAGC TGCATATTCA chr3R:25885286-25885406 109 1.70e-05 GGATTGAAGC GGTGCAGC TGAC chr3R:26566996-26567116 2 2.47e-05 C AGTGCAGC AACCAATCGT chr3L:745715-745835 98 2.47e-05 AATTTATTTC AGTGCAGC TACTCAGCAG chr3L:5857096-5857216 106 2.47e-05 AATTTCTTCC AGTGCAGC TGAGATA chr2L:11394288-11394408 107 2.47e-05 CATTTTTTTC AGTGCAGC ATTACA chr2R:22511622-22511742 19 2.96e-05 AACAAACAGA GGAGCTGC AACAGCTGCC chr3L:13068381-13068501 8 2.96e-05 AGAATCT GGAGCTGC TTACACTGAG chr3R:9870089-9870209 84 6.00e-05 CTTGCATCTC CGAGCAGC CAAACAATGA chr2L:1614158-1614278 69 6.00e-05 ATTAGTGTAT AGTGCTGC CAGCTATTTG chr3R:22596590-22596710 37 6.00e-05 cacacacacG CGAGCAGC CCCAAGTGGG chr2R:22700673-22700793 113 6.00e-05 CTTTACATCC GCAGCAGC chr2R:23979551-23979671 19 6.00e-05 CGAAAGCGCG AGTGCTGC AGTATTAGTG chr3R:29541514-29541634 70 6.00e-05 ATATTTCAAA AGTGCTGC TTATGTTTGT chr2L:4892159-4892279 9 7.07e-05 gagcaaca acagcagc aactgtccac chr2L:22036943-22037063 83 7.07e-05 ACGGGGAAGA ACAGCAGC TGAGTTCTTG chr3R:8308808-8308928 98 8.55e-05 TTATTGTATC GCTGCAGC AAAACAAACA chr2R:11175526-11175646 73 8.55e-05 gcacactcac agggcagc ggcaaacaaa chrX:11660608-11660728 112 1.07e-04 GTCTGCATCA GCAGCTGC G chr3L:16385568-16385688 83 1.07e-04 ATGTCTATCT GCAGCTGC GCCGTTCTTA chr3R:31309410-31309530 86 1.22e-04 ATAAACACGC AGAGCGGC AAACTCGTAT chr3L:14780324-14780444 82 1.41e-04 TATCACGTTA CGTGCTGC CCTCTTAATT chr2R:7989840-7989960 34 1.41e-04 CTCTCCTTGT AGGGCTGC ATTACCGGCG chr3R:22023101-22023221 38 1.41e-04 ACGAGTCCTG CGTGCTGC TCGTCGTCCT chr3R:22664373-22664493 105 1.41e-04 ACATTCGATG GCTGCTGC TTTGATTT chr3L:20944341-20944461 49 1.65e-04 AAACAAATGA GCGGCAGC AGGCAGAATA chr2R:8242630-8242750 67 1.65e-04 TGAGATCGTG CGGGCAGC GATCGAGACG chr2L:16476540-16476660 83 2.00e-04 AAGCCAAAAG ACAGCGGC GATGGGCAAA chr3R:15670663-15670783 29 2.00e-04 TCCAATGTCA ACAGCGGC TTACATTTGA chr2R:14906376-14906496 100 2.36e-04 GAGAAATTTA TGAGCAGC TGAAGCATTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGWGCWGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:974249-974369 4.7e-06 94_[+4]_18 chr3R:23922315-23922435 1.2e-05 90_[+4]_22 chrX:3188577-3188697 1.2e-05 103_[+4]_9 chr3L:5926045-5926165 1.7e-05 24_[+4]_88 chr3R:25885286-25885406 1.7e-05 108_[+4]_4 chr3R:26566996-26567116 2.5e-05 1_[+4]_111 chr3L:745715-745835 2.5e-05 97_[+4]_15 chr3L:5857096-5857216 2.5e-05 105_[+4]_7 chr2L:11394288-11394408 2.5e-05 106_[+4]_6 chr2R:22511622-22511742 3e-05 18_[+4]_94 chr3L:13068381-13068501 3e-05 7_[+4]_105 chr3R:9870089-9870209 6e-05 83_[+4]_29 chr2L:1614158-1614278 6e-05 68_[+4]_44 chr3R:22596590-22596710 6e-05 36_[+4]_76 chr2R:22700673-22700793 6e-05 112_[+4] chr2R:23979551-23979671 6e-05 18_[+4]_94 chr3R:29541514-29541634 6e-05 69_[+4]_43 chr2L:4892159-4892279 7.1e-05 8_[+4]_104 chr2L:22036943-22037063 7.1e-05 82_[+4]_30 chr3R:8308808-8308928 8.6e-05 97_[+4]_15 chr2R:11175526-11175646 8.6e-05 72_[+4]_40 chrX:11660608-11660728 0.00011 111_[+4]_1 chr3L:16385568-16385688 0.00011 82_[+4]_30 chr3R:31309410-31309530 0.00012 85_[+4]_27 chr3L:14780324-14780444 0.00014 81_[+4]_31 chr2R:7989840-7989960 0.00014 33_[+4]_79 chr3R:22023101-22023221 0.00014 37_[+4]_75 chr3R:22664373-22664493 0.00014 104_[+4]_8 chr3L:20944341-20944461 0.00017 48_[+4]_64 chr2R:8242630-8242750 0.00017 66_[+4]_46 chr2L:16476540-16476660 0.0002 82_[+4]_30 chr3R:15670663-15670783 0.0002 28_[+4]_84 chr2R:14906376-14906496 0.00024 99_[+4]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGWGCWGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGWGCWGC width=8 seqs=33 chr2L:974249-974369 ( 95) GGAGCAGC 1 chr3R:23922315-23922435 ( 91) AGAGCAGC 1 chrX:3188577-3188697 ( 104) AGAGCAGC 1 chr3L:5926045-5926165 ( 25) GGTGCAGC 1 chr3R:25885286-25885406 ( 109) GGTGCAGC 1 chr3R:26566996-26567116 ( 2) AGTGCAGC 1 chr3L:745715-745835 ( 98) AGTGCAGC 1 chr3L:5857096-5857216 ( 106) AGTGCAGC 1 chr2L:11394288-11394408 ( 107) AGTGCAGC 1 chr2R:22511622-22511742 ( 19) GGAGCTGC 1 chr3L:13068381-13068501 ( 8) GGAGCTGC 1 chr3R:9870089-9870209 ( 84) CGAGCAGC 1 chr2L:1614158-1614278 ( 69) AGTGCTGC 1 chr3R:22596590-22596710 ( 37) CGAGCAGC 1 chr2R:22700673-22700793 ( 113) GCAGCAGC 1 chr2R:23979551-23979671 ( 19) AGTGCTGC 1 chr3R:29541514-29541634 ( 70) AGTGCTGC 1 chr2L:4892159-4892279 ( 9) ACAGCAGC 1 chr2L:22036943-22037063 ( 83) ACAGCAGC 1 chr3R:8308808-8308928 ( 98) GCTGCAGC 1 chr2R:11175526-11175646 ( 73) AGGGCAGC 1 chrX:11660608-11660728 ( 112) GCAGCTGC 1 chr3L:16385568-16385688 ( 83) GCAGCTGC 1 chr3R:31309410-31309530 ( 86) AGAGCGGC 1 chr3L:14780324-14780444 ( 82) CGTGCTGC 1 chr2R:7989840-7989960 ( 34) AGGGCTGC 1 chr3R:22023101-22023221 ( 38) CGTGCTGC 1 chr3R:22664373-22664493 ( 105) GCTGCTGC 1 chr3L:20944341-20944461 ( 49) GCGGCAGC 1 chr2R:8242630-8242750 ( 67) CGGGCAGC 1 chr2L:16476540-16476660 ( 83) ACAGCGGC 1 chr3R:15670663-15670783 ( 29) ACAGCGGC 1 chr2R:14906376-14906496 ( 100) TGAGCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGWGCWGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.507 E= 3.8e+003 69 -39 81 -335 -1169 61 187 -1169 69 -1169 -65 35 -1169 -1169 239 -1169 -1169 234 -1169 -1169 93 -1169 -107 10 -1169 -1169 239 -1169 -1169 234 -1169 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGWGCWGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 3.8e+003 0.484848 0.151515 0.333333 0.030303 0.000000 0.303030 0.696970 0.000000 0.484848 0.000000 0.121212 0.393939 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.575758 0.000000 0.090909 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGWGCWGC MEME-4 regular expression -------------------------------------------------------------------------------- [AG][GC][AT]GC[AT]GC -------------------------------------------------------------------------------- Time 26.83 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGGAGG MEME-5 width = 8 sites = 2 llr = 26 E-value = 9.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGGAGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C :::::::: probability G aaaaa:aa matrix T :::::::: bits 2.4 ***** ** 2.2 ***** ** 1.9 ***** ** 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGAGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGAGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:15565337-15565457 65 2.79e-06 AGTGTGGAGA GGGGGAGG GTGGGAGTGG chr3R:23922315-23922435 79 2.79e-06 GGGCAGAGGA GGGGGAGG GGGTAGAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGAGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15565337-15565457 2.8e-06 64_[+5]_48 chr3R:23922315-23922435 2.8e-06 78_[+5]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGAGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGGAGG width=8 seqs=2 chr2R:15565337-15565457 ( 65) GGGGGAGG 1 chr3R:23922315-23922435 ( 79) GGGGGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGAGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 9.4e+003 -765 -765 239 -765 -765 -765 239 -765 -765 -765 239 -765 -765 -765 239 -765 -765 -765 239 -765 172 -765 -765 -765 -765 -765 239 -765 -765 -765 239 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGAGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 9.4e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGAGG MEME-5 regular expression -------------------------------------------------------------------------------- GGGGGAGG -------------------------------------------------------------------------------- Time 32.74 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23141981-23142101 3.98e-01 120 chrX:7299950-7300070 8.00e-01 120 chr2L:17778477-17778597 3.64e-01 120 chr2L:7810636-7810756 2.97e-01 120 chr2L:9775351-9775471 7.36e-03 2_[+2(7.85e-05)]_82_[+1(8.74e-05)]_\ 20 chr3L:17993439-17993559 3.69e-01 120 chr3L:10858609-10858729 7.83e-03 22_[+3(3.29e-05)]_19_[+2(7.85e-05)]_\ 63 chr3R:13817595-13817715 4.39e-02 120 chr2L:16520088-16520208 9.82e-02 22_[+1(3.39e-05)]_40_[+1(3.39e-05)]_\ 42 chr2L:15432376-15432496 7.35e-01 120 chr2R:19413324-19413444 2.66e-03 34_[+3(3.29e-05)]_21_[+1(3.39e-05)]_\ 49 chr3L:4615215-4615335 4.86e-03 17_[+1(5.46e-05)]_35_[+2(1.85e-05)]_\ 52 chr2L:10276947-10277067 1.71e-01 120 chr3R:30802916-30803036 9.06e-01 120 chrX:17473415-17473535 2.51e-02 71_[+2(1.85e-05)]_41 chr2L:7266110-7266230 7.88e-01 120 chr3R:30919094-30919214 2.88e-02 18_[+1(1.32e-05)]_94 chr2R:12729948-12730068 3.24e-02 120 chr2L:22036943-22037063 3.83e-04 37_[+1(1.32e-05)]_37_[+4(7.07e-05)]_\ 30 chr2R:8242630-8242750 5.94e-03 120 chrX:5917201-5917321 1.90e-01 35_[+2(7.85e-05)]_77 chr2R:6603095-6603215 4.90e-01 120 chr4:225972-226092 1.03e-03 107_[+3(1.28e-05)]_5 chr4:980247-980367 7.22e-01 120 chr3R:19847933-19848053 6.56e-03 109_[+3(1.28e-05)]_3 chr3R:6667428-6667548 9.60e-02 120 chr3R:15983733-15983853 6.18e-01 120 chr2R:18609027-18609147 2.29e-03 44_[+1(5.46e-05)]_30_[+2(4.93e-05)]_\ 30 chrX:17780448-17780568 8.19e-01 120 chr2L:15337367-15337487 4.71e-01 120 chrX:13088121-13088241 7.62e-01 120 chr2R:22540022-22540142 9.18e-02 41_[+1(8.74e-05)]_71 chr2R:22525212-22525332 1.59e-02 24_[+2(1.85e-05)]_88 chr2L:8554462-8554582 1.16e-01 108_[+1(8.74e-05)]_4 chr2R:21527354-21527474 7.91e-01 120 chr2R:23180956-23181076 2.85e-05 41_[+3(3.29e-05)]_10_[+2(3.76e-05)]_\ 37_[+5(9.20e-05)]_8 chr3R:11351486-11351606 4.19e-01 120 chr3R:16069436-16069556 1.91e-01 120 chr2R:13990404-13990524 3.64e-01 120 chr2R:20126189-20126309 1.65e-01 120 chr3R:31309410-31309530 5.85e-02 120 chr2L:7572024-7572144 2.94e-03 61_[+2(7.85e-05)]_7_[+3(4.10e-05)]_\ 36 chr2R:21848583-21848703 3.61e-01 120 chr2R:11175526-11175646 1.62e-02 31_[+2(4.93e-05)]_[+2(7.85e-05)]_25_\ [+4(8.55e-05)]_[+2(4.93e-05)]_32 chr2L:19219514-19219634 8.80e-01 120 chrX:6614421-6614541 1.70e-03 76_[+3(7.91e-05)]_10_[+2(4.93e-05)]_\ 18 chr3R:5107005-5107125 8.80e-03 56_[+1(1.32e-05)]_56 chr3R:30767243-30767363 5.30e-02 120 chr3L:20944341-20944461 1.97e-02 22_[+2(4.93e-05)]_5_[+2(4.93e-05)]_\ 60_[+2(1.85e-05)]_9 chrX:19164845-19164965 7.57e-03 1_[+5(9.20e-05)]_26_[+3(8.69e-05)]_\ 77 chr2L:11394288-11394408 4.91e-03 106_[+4(2.47e-05)]_6 chr3R:11617480-11617600 3.68e-01 120 chr3R:26011618-26011738 2.36e-01 120 chrX:17582786-17582906 9.80e-02 120 chr2L:9525074-9525194 2.02e-01 120 chr2L:10505032-10505152 6.44e-01 120 chr3R:15089425-15089545 2.24e-01 120 chrX:3367415-3367535 9.86e-01 120 chr2L:12372582-12372702 5.93e-01 120 chr3R:13885170-13885290 1.13e-01 120 chr3L:15199337-15199457 9.80e-01 120 chr3R:10598345-10598465 1.39e-01 120 chr3L:14194226-14194346 2.05e-02 15_[+2(3.76e-05)]_97 chr3R:29541514-29541634 1.32e-02 69_[+4(6.00e-05)]_43 chr2L:6948785-6948905 7.66e-01 120 chr2R:14077541-14077661 8.31e-01 120 chr2R:14494777-14494897 1.21e-03 56_[+3(3.29e-05)]_56 chr3R:10150717-10150837 1.22e-02 120 chr3R:25885286-25885406 2.39e-03 36_[+2(4.93e-05)]_64_[+4(1.70e-05)]_\ 4 chrX:6643065-6643185 6.28e-01 120 chr3R:5065045-5065165 2.95e-01 120 chr3L:4272365-4272485 2.49e-02 75_[+1(7.46e-05)]_37 chr3L:3390729-3390849 3.57e-04 31_[+3(7.41e-05)]_81 chrX:20506050-20506170 1.16e-01 52_[+1(7.46e-05)]_60 chr2L:7339811-7339931 1.12e-01 120 chr3L:8925819-8925939 2.95e-01 120 chr3R:22664373-22664493 3.32e-01 120 chr3R:21856774-21856894 1.00e-01 8_[+2(1.85e-05)]_104 chrX:6994637-6994757 1.00e-02 109_[+1(1.32e-05)]_3 chr2R:15754445-15754565 9.85e-01 120 chr3R:30501285-30501405 5.87e-01 120 chr3L:3518999-3519119 1.95e-01 80_[+2(7.85e-05)]_32 chr3R:15670663-15670783 2.99e-02 120 chrX:19770224-19770344 6.91e-01 120 chr2L:12351074-12351194 8.91e-01 120 chr3R:18242808-18242928 8.28e-01 120 chr2R:23979551-23979671 2.16e-02 18_[+4(6.00e-05)]_94 chr3R:22023101-22023221 2.96e-01 120 chrX:7000974-7001094 4.31e-01 120 chr3L:12606446-12606566 9.75e-03 120 chr3R:8923069-8923189 9.39e-01 120 chr3R:27138086-27138206 2.54e-01 120 chr3L:13068381-13068501 1.51e-02 7_[+4(2.96e-05)]_105 chrX:3134428-3134548 9.41e-01 120 chr2L:974249-974369 8.26e-04 94_[+4(4.73e-06)]_18 chr3R:16655847-16655967 3.74e-01 120 chr3L:11273764-11273884 1.15e-01 120 chr3L:22407745-22407865 2.53e-01 120 chr3L:16385568-16385688 4.55e-02 120 chr3L:5807502-5807622 2.37e-05 11_[+1(1.32e-05)]_101 chr2L:11331833-11331953 6.51e-01 120 chr3L:20389131-20389251 4.90e-01 120 chr2L:2494660-2494780 2.46e-02 53_[+2(3.76e-05)]_59 chr2R:22387709-22387829 4.05e-03 63_[+2(1.85e-05)]_8_[+1(5.46e-05)]_\ 33 chr3R:10140469-10140589 6.26e-02 120 chrX:3538924-3539044 9.95e-01 120 chr3R:24360098-24360218 2.67e-01 120 chr3L:5857096-5857216 1.01e-01 105_[+4(2.47e-05)]_7 chr2R:6524892-6525012 2.06e-02 120 chr3L:6059160-6059280 1.68e-01 120 chr3R:8308808-8308928 1.83e-04 7_[+1(8.74e-05)]_1_[+2(3.76e-05)]_\ 73_[+4(8.55e-05)]_2_[+2(7.85e-05)]_5 chr2L:16476540-16476660 5.73e-04 40_[+1(1.32e-05)]_72 chr3L:8018667-8018787 2.83e-03 89_[+1(1.32e-05)]_23 chr2L:1462207-1462327 2.65e-01 120 chr2R:22700673-22700793 3.68e-02 112_[+4(6.00e-05)] chr2R:9406810-9406930 1.61e-03 74_[+1(3.39e-05)]_38 chr2R:13261808-13261928 9.48e-01 120 chr3L:3875200-3875320 4.76e-01 120 chr3L:15715924-15716044 3.33e-03 8_[+1(1.32e-05)]_104 chr2L:16677124-16677244 5.38e-02 94_[+2(7.85e-05)]_18 chr2R:14906376-14906496 2.39e-03 29_[+3(5.38e-05)]_83 chr2R:15351257-15351377 3.74e-01 120 chr2R:11469598-11469718 1.62e-01 120 chr2L:6283419-6283539 4.75e-04 56_[+3(1.28e-05)]_56 chrX:3704496-3704616 5.05e-02 91_[+1(7.46e-05)]_21 chr3R:23300775-23300895 6.23e-01 120 chr2R:7987888-7988008 3.87e-01 120 chr3R:23872910-23873030 8.70e-01 120 chr2L:3852271-3852391 2.24e-01 120 chr3R:6504553-6504673 2.25e-03 5_[+2(1.85e-05)]_107 chrX:2294665-2294785 5.27e-01 120 chr2L:21037879-21037999 1.19e-02 17_[+1(1.32e-05)]_95 chr2R:21134537-21134657 3.04e-01 120 chrX:11660608-11660728 3.61e-03 3_[+1(7.46e-05)]_9_[+1(3.39e-05)]_\ 10_[+1(3.39e-05)]_7_[+1(5.46e-05)]_8_[+1(3.39e-05)]_9_[+1(1.32e-05)]_26 chr3L:1861900-1862020 8.74e-01 120 chrX:7333324-7333444 1.00e-01 60_[+3(5.38e-05)]_52 chr2R:10303698-10303818 5.47e-02 120 chr2L:11206948-11207068 2.81e-01 120 chr3R:5998445-5998565 8.54e-01 120 chr3L:745715-745835 1.45e-01 97_[+4(2.47e-05)]_15 chr2R:18288963-18289083 3.39e-01 120 chr3L:1414174-1414294 6.19e-01 120 chr2R:7989840-7989960 1.25e-03 3_[+1(7.46e-05)]_109 chr3L:5987763-5987883 3.82e-01 120 chr2L:6700745-6700865 7.07e-03 101_[+1(1.32e-05)]_11 chr3R:31053992-31054112 5.25e-01 120 chrX:3188577-3188697 3.21e-03 58_[+3(3.29e-05)]_37_[+4(1.22e-05)]_\ 9 chr2L:7043181-7043301 9.29e-03 38_[+1(1.32e-05)]_6_[+1(7.46e-05)]_\ 60 chr3R:20276108-20276228 5.02e-02 81_[+1(3.39e-05)]_31 chr2L:3598633-3598753 9.42e-01 120 chr2R:22657051-22657171 2.54e-03 61_[+5(9.20e-05)]_21_[+1(5.46e-05)]_\ 22 chrX:16644917-16645037 7.57e-02 120 chr2R:9006899-9007019 1.72e-02 33_[+1(3.39e-05)]_79 chr2R:11628145-11628265 3.35e-02 120 chrX:2061273-2061393 7.96e-01 120 chr3L:21130977-21131097 3.34e-01 120 chr3R:31793824-31793944 8.22e-02 81_[+3(1.28e-05)]_31 chr3R:23387023-23387143 6.44e-01 120 chr3L:14956443-14956563 4.79e-02 120 chr3L:1352132-1352252 9.39e-01 120 chr3R:20263842-20263962 4.44e-03 120 chr3L:9461735-9461855 1.61e-01 120 chr3L:14780324-14780444 1.54e-03 120 chr2R:11541198-11541318 7.37e-02 10_[+2(7.85e-05)]_18_[+2(1.85e-05)]_\ 40_[+2(4.93e-05)]_28 chrX:6375762-6375882 3.23e-02 120 chr3L:5974688-5974808 2.00e-02 83_[+1(7.46e-05)]_29 chr3R:24809686-24809806 3.31e-02 120 chrX:9137253-9137373 7.09e-01 120 chr3R:31060314-31060434 1.65e-01 120 chrX:19683382-19683502 3.10e-01 120 chr3R:10350755-10350875 1.95e-01 120 chr2R:9309660-9309780 2.09e-01 120 chr3R:31169100-31169220 1.61e-02 120 chr3R:31596336-31596456 1.12e-01 120 chr3R:22596590-22596710 7.60e-03 36_[+4(6.00e-05)]_76 chr3R:30413947-30414067 5.20e-01 120 chr3L:5926045-5926165 2.04e-01 24_[+4(1.70e-05)]_88 chr2R:20067307-20067427 5.31e-01 120 chr2R:17514131-17514251 1.93e-01 120 chr2L:1614158-1614278 5.62e-03 68_[+4(6.00e-05)]_44 chr2R:11639703-11639823 1.67e-01 120 chr3R:23922315-23922435 7.49e-06 78_[+5(2.79e-06)]_4_[+4(1.22e-05)]_\ 22 chr3R:26888442-26888562 7.34e-01 120 chr3L:1177111-1177231 1.61e-01 120 chr3L:21007862-21007982 7.04e-02 90_[+2(7.85e-05)]_22 chr2R:22686553-22686673 9.95e-01 120 chr2R:10103835-10103955 9.98e-01 120 chr2L:6698464-6698584 6.77e-01 120 chr3L:3665439-3665559 8.27e-01 120 chr3R:19472427-19472547 3.40e-03 54_[+3(1.28e-05)]_58 chr2L:18900080-18900200 8.47e-01 120 chr2R:12019255-12019375 6.94e-03 43_[+3(6.17e-05)]_69 chr3R:5319212-5319332 5.52e-03 14_[+2(7.85e-05)]_33_[+2(3.76e-05)]_\ 57 chr3L:17912672-17912792 9.79e-01 120 chr3R:9055231-9055351 9.84e-01 120 chr2L:6339622-6339742 2.29e-02 120 chr3R:6468141-6468261 4.76e-01 120 chr3R:26566996-26567116 5.82e-03 1_[+4(2.47e-05)]_111 chr3L:21509422-21509542 3.95e-01 120 chr2R:15565337-15565457 1.63e-05 64_[+5(2.79e-06)]_48 chr3R:4997543-4997663 7.22e-01 120 chr3R:27209156-27209276 1.19e-03 17_[+2(3.76e-05)]_14_[+3(3.29e-05)]_\ 73 chr2R:22511622-22511742 1.56e-02 8_[+2(7.85e-05)]_2_[+4(2.96e-05)]_\ 94 chr2R:23176792-23176912 2.51e-01 120 chr3R:23176569-23176689 4.71e-01 120 chr3R:24206872-24206992 9.74e-01 120 chr3L:2489619-2489739 3.60e-03 21_[+1(7.46e-05)]_91 chr2L:11417716-11417836 7.11e-01 120 chr2L:7204284-7204404 1.93e-01 120 chr2R:11095289-11095409 3.29e-01 120 chr2R:20601144-20601264 5.39e-02 61_[+3(5.38e-05)]_51 chr3R:16496282-16496402 3.26e-01 120 chr3R:21203971-21204091 1.23e-01 120 chr2L:4892159-4892279 2.62e-01 8_[+4(7.07e-05)]_104 chr3R:15676360-15676480 5.03e-02 74_[+1(1.32e-05)]_1_[+1(1.32e-05)]_\ 29 chrX:5420744-5420864 1.13e-01 120 chr2L:19159356-19159476 6.29e-01 120 chr2L:3566662-3566782 5.35e-01 120 chr3R:4992530-4992650 1.43e-03 120 chr2L:20897110-20897230 2.03e-02 72_[+3(1.28e-05)]_40 chr2R:7474298-7474418 8.60e-03 57_[+1(3.39e-05)]_45_[+2(3.76e-05)]_\ 2 chr3L:9446904-9447024 2.97e-01 120 chr2L:16703897-16704017 9.08e-01 120 chr3R:9870089-9870209 4.44e-04 30_[+1(5.46e-05)]_45_[+4(6.00e-05)]_\ 29 chrX:11548873-11548993 8.64e-01 120 chr2R:23940128-23940248 8.74e-01 120 chrX:21241975-21242095 5.30e-03 58_[+3(1.28e-05)]_15_[+3(5.38e-05)]_\ 19_[+1(5.46e-05)]_4 chr2L:18921424-18921544 3.39e-01 120 chr2L:10552912-10553032 1.01e-01 120 chr2R:7031119-7031239 1.61e-03 69_[+1(1.32e-05)]_43 chr3R:26130695-26130815 1.64e-02 120 chr3R:31395352-31395472 9.12e-02 105_[+5(9.20e-05)]_7 chr3L:10845158-10845278 3.51e-02 120 chr3L:8549358-8549478 6.48e-01 120 chr2L:20945363-20945483 1.49e-01 120 chr3L:18625953-18626073 1.33e-01 120 chr3L:16975940-16976060 2.84e-01 120 chr3L:14613096-14613216 6.86e-01 120 chr3L:22163836-22163956 8.19e-02 120 chr2R:11738720-11738840 7.37e-01 120 chr3L:20313584-20313704 7.86e-01 120 chr2L:1108387-1108507 9.97e-02 120 chr3R:21151619-21151739 8.22e-01 120 chr2L:6700952-6701072 1.26e-01 120 chrX:16158602-16158722 8.02e-01 120 chr2L:11807111-11807231 5.80e-01 120 chr3L:5881805-5881925 9.68e-01 120 chr3R:8105282-8105402 9.83e-01 120 chr3L:17659305-17659425 1.45e-01 120 chr3L:12062975-12063095 9.97e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************