******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12219.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:6308950-6309070 1.0000 120 chr3R:27426815-27426935 1.0000 120 chr3R:13320007-13320127 1.0000 120 chr3R:23803812-23803932 1.0000 120 chr2R:7680890-7681010 1.0000 120 chr2R:23567377-23567497 1.0000 120 chr3L:14172700-14172820 1.0000 120 chr2L:13258852-13258972 1.0000 120 chr2L:12498682-12498802 1.0000 120 chr2R:13261854-13261974 1.0000 120 chr2L:3100917-3101037 1.0000 120 chr3R:7103613-7103733 1.0000 120 chrX:18837171-18837291 1.0000 120 chr2R:11426856-11426976 1.0000 120 chr2L:5610234-5610354 1.0000 120 chr3R:17655159-17655279 1.0000 120 chr3R:10053689-10053809 1.0000 120 chr3L:15597188-15597308 1.0000 120 chr3L:8835044-8835164 1.0000 120 chrX:5989538-5989658 1.0000 120 chr3R:15927339-15927459 1.0000 120 chr3L:5096789-5096909 1.0000 120 chr2R:20252187-20252307 1.0000 120 chr3L:12223054-12223174 1.0000 120 chrX:14634812-14634932 1.0000 120 chr3R:17818954-17819074 1.0000 120 chr3L:7013669-7013789 1.0000 120 chr2R:23551164-23551284 1.0000 120 chr3R:21163375-21163495 1.0000 120 chr2L:5743644-5743764 1.0000 120 chrX:13088149-13088269 1.0000 120 chr3R:9888843-9888963 1.0000 120 chr3R:8256203-8256323 1.0000 120 chr3L:20664074-20664194 1.0000 120 chr3L:3226278-3226398 1.0000 120 chr3L:16482280-16482400 1.0000 120 chrX:12248997-12249117 1.0000 120 chr3R:8784923-8785043 1.0000 120 chr3R:30461668-30461788 1.0000 120 chr3R:21561460-21561580 1.0000 120 chr3R:5300741-5300861 1.0000 120 chr2R:24292842-24292962 1.0000 120 chr2R:14486993-14487113 1.0000 120 chr3R:22878565-22878685 1.0000 120 chr2R:16610063-16610183 1.0000 120 chr3R:18169191-18169311 1.0000 120 chr2L:8552562-8552682 1.0000 120 chr3R:22573722-22573842 1.0000 120 chr2L:2168319-2168439 1.0000 120 chr3L:22665272-22665392 1.0000 120 chr2R:20572629-20572749 1.0000 120 chr2R:12547710-12547830 1.0000 120 chr3R:9516589-9516709 1.0000 120 chr2R:23202143-23202263 1.0000 120 chr2L:1230842-1230962 1.0000 120 chrX:524480-524600 1.0000 120 chr2R:13450054-13450174 1.0000 120 chr3R:7779755-7779875 1.0000 120 chr3L:9425831-9425951 1.0000 120 chr2R:13576382-13576502 1.0000 120 chr3R:17966133-17966253 1.0000 120 chr2R:12008901-12009021 1.0000 120 chr2R:19138046-19138166 1.0000 120 chr3R:9085443-9085563 1.0000 120 chr2R:18605510-18605630 1.0000 120 chr3R:21629863-21629983 1.0000 120 chr2R:18273455-18273575 1.0000 120 chrX:12547793-12547913 1.0000 120 chr3R:11338415-11338535 1.0000 120 chrX:5084992-5085112 1.0000 120 chr2L:892563-892683 1.0000 120 chr2R:15134250-15134370 1.0000 120 chr3R:30134822-30134942 1.0000 120 chr2R:23578545-23578665 1.0000 120 chr2L:14123710-14123830 1.0000 120 chr2L:5547470-5547590 1.0000 120 chrX:13088690-13088810 1.0000 120 chr2L:10351360-10351480 1.0000 120 chrX:10573678-10573798 1.0000 120 chrX:10067669-10067789 1.0000 120 chr3L:16840612-16840732 1.0000 120 chr3R:26892932-26893052 1.0000 120 chrX:6663263-6663383 1.0000 120 chr2L:3748820-3748940 1.0000 120 chr2R:23739378-23739498 1.0000 120 chr2L:8080759-8080879 1.0000 120 chr3R:15286789-15286909 1.0000 120 chr3L:15706317-15706437 1.0000 120 chr2L:12457338-12457458 1.0000 120 chr2L:10505031-10505151 1.0000 120 chr3L:960736-960856 1.0000 120 chr3R:21271339-21271459 1.0000 120 chr2L:9908741-9908861 1.0000 120 chr2R:13470285-13470405 1.0000 120 chr2L:7154976-7155096 1.0000 120 chrX:5095751-5095871 1.0000 120 chr3L:8604420-8604540 1.0000 120 chr2R:10059156-10059276 1.0000 120 chr2L:20840626-20840746 1.0000 120 chr2R:9875106-9875226 1.0000 120 chr2L:7492068-7492188 1.0000 120 chr3R:21112575-21112695 1.0000 120 chrX:10825437-10825557 1.0000 120 chr2L:17583123-17583243 1.0000 120 chr2R:19413332-19413452 1.0000 120 chrX:13789064-13789184 1.0000 120 chr2R:22539407-22539527 1.0000 120 chr2R:10238153-10238273 1.0000 120 chr2R:23611362-23611482 1.0000 120 chr3L:17531523-17531643 1.0000 120 chr3R:13549611-13549731 1.0000 120 chr3R:9083524-9083644 1.0000 120 chr3R:11688382-11688502 1.0000 120 chrX:10582193-10582313 1.0000 120 chr2R:24881604-24881724 1.0000 120 chr3L:17404785-17404905 1.0000 120 chr2R:24943215-24943335 1.0000 120 chr2R:22384396-22384516 1.0000 120 chr3L:4221436-4221556 1.0000 120 chr3R:27289832-27289952 1.0000 120 chr3R:11661897-11662017 1.0000 120 chr2L:6461674-6461794 1.0000 120 chr2R:9546553-9546673 1.0000 120 chr3R:19848014-19848134 1.0000 120 chr3L:20406471-20406591 1.0000 120 chr3R:23730174-23730294 1.0000 120 chr3R:20263851-20263971 1.0000 120 chr2R:7381793-7381913 1.0000 120 chr2L:10238134-10238254 1.0000 120 chr2R:22270524-22270644 1.0000 120 chr3L:8018733-8018853 1.0000 120 chr3L:10337696-10337816 1.0000 120 chr2L:9235593-9235713 1.0000 120 chr3L:1216604-1216724 1.0000 120 chr3R:10648946-10649066 1.0000 120 chr2L:6465655-6465775 1.0000 120 chr2R:15135649-15135769 1.0000 120 chr3L:19132746-19132866 1.0000 120 chr3R:23445371-23445491 1.0000 120 chr3R:25885273-25885393 1.0000 120 chr3L:11303937-11304057 1.0000 120 chr3L:14028578-14028698 1.0000 120 chr3R:29690572-29690692 1.0000 120 chrX:9664558-9664678 1.0000 120 chr3R:29083981-29084101 1.0000 120 chr2L:8694338-8694458 1.0000 120 chr3R:31687920-31688040 1.0000 120 chr2R:18397627-18397747 1.0000 120 chr2L:8938148-8938268 1.0000 120 chr2R:17274134-17274254 1.0000 120 chr2L:8100904-8101024 1.0000 120 chr2L:9943604-9943724 1.0000 120 chr2L:11950034-11950154 1.0000 120 chr3R:16069413-16069533 1.0000 120 chr2L:4403158-4403278 1.0000 120 chr2L:20890049-20890169 1.0000 120 chr3R:17079363-17079483 1.0000 120 chr3L:7869001-7869121 1.0000 120 chr3R:24010967-24011087 1.0000 120 chr3R:24206845-24206965 1.0000 120 chr3L:20731037-20731157 1.0000 120 chr3R:23947156-23947276 1.0000 120 chr3R:14300106-14300226 1.0000 120 chr3L:1189234-1189354 1.0000 120 chr3R:26937555-26937675 1.0000 120 chr3L:9762157-9762277 1.0000 120 chr3L:6817060-6817180 1.0000 120 chr2R:13482225-13482345 1.0000 120 chr3L:21065326-21065446 1.0000 120 chr2L:868457-868577 1.0000 120 chr3L:12668166-12668286 1.0000 120 chr3L:1414166-1414286 1.0000 120 chr3L:9028182-9028302 1.0000 120 chrX:4262796-4262916 1.0000 120 chrX:11451208-11451328 1.0000 120 chr3R:23387064-23387184 1.0000 120 chr2L:6455129-6455249 1.0000 120 chrX:3019679-3019799 1.0000 120 chr3R:8171599-8171719 1.0000 120 chr3R:10140389-10140509 1.0000 120 chrX:5639208-5639328 1.0000 120 chr2L:21218844-21218964 1.0000 120 chr2L:18377317-18377437 1.0000 120 chr2L:7519018-7519138 1.0000 120 chr3R:26888458-26888578 1.0000 120 chr3L:4522032-4522152 1.0000 120 chr3L:5926064-5926184 1.0000 120 chr2L:1207596-1207716 1.0000 120 chr3L:20389182-20389302 1.0000 120 chr2R:11190923-11191043 1.0000 120 chr3R:4846909-4847029 1.0000 120 chr3R:14470762-14470882 1.0000 120 chr3L:20471114-20471234 1.0000 120 chr3R:28677011-28677131 1.0000 120 chr2L:16819825-16819945 1.0000 120 chr2L:14441016-14441136 1.0000 120 chr2L:7494478-7494598 1.0000 120 chr3R:28857391-28857511 1.0000 120 chr2L:12507723-12507843 1.0000 120 chr2L:3003547-3003667 1.0000 120 chr3R:10203695-10203815 1.0000 120 chrX:16854867-16854987 1.0000 120 chrX:2061277-2061397 1.0000 120 chr3R:29068958-29069078 1.0000 120 chrX:20511581-20511701 1.0000 120 chr3L:3450495-3450615 1.0000 120 chr3L:6218687-6218807 1.0000 120 chr2L:5096979-5097099 1.0000 120 chr3R:31309443-31309563 1.0000 120 chr3R:18242123-18242243 1.0000 120 chrX:3690760-3690880 1.0000 120 chr2R:8002310-8002430 1.0000 120 chr3L:14190146-14190266 1.0000 120 chr2L:19796174-19796294 1.0000 120 chr2L:19935243-19935363 1.0000 120 chr3L:824553-824673 1.0000 120 chr3L:1376118-1376238 1.0000 120 chr3R:22039648-22039768 1.0000 120 chr2L:20950794-20950914 1.0000 120 chr2R:13008343-13008463 1.0000 120 chr3L:14555236-14555356 1.0000 120 chr3R:22260369-22260489 1.0000 120 chr3R:11809798-11809918 1.0000 120 chr3R:31134174-31134294 1.0000 120 chr3R:8744341-8744461 1.0000 120 chr3L:2159051-2159171 1.0000 120 chr3L:9511405-9511525 1.0000 120 chr3R:16834787-16834907 1.0000 120 chr2R:11541250-11541370 1.0000 120 chr2R:18883650-18883770 1.0000 120 chr2R:13541482-13541602 1.0000 120 chrX:16655892-16656012 1.0000 120 chr3R:29877005-29877125 1.0000 120 chr3L:19791846-19791966 1.0000 120 chr3R:6667367-6667487 1.0000 120 chr3L:4288832-4288952 1.0000 120 chr2L:19377573-19377693 1.0000 120 chr3R:23919511-23919631 1.0000 120 chr3R:22781559-22781679 1.0000 120 chrX:11660618-11660738 1.0000 120 chr2L:18328912-18329032 1.0000 120 chr3R:6468200-6468320 1.0000 120 chr3R:19472366-19472486 1.0000 120 chr2R:12025203-12025323 1.0000 120 chr3L:16969791-16969911 1.0000 120 chr2R:6524846-6524966 1.0000 120 chr3L:6157708-6157828 1.0000 120 chr2L:10565842-10565962 1.0000 120 chr2L:4838599-4838719 1.0000 120 chr3L:14977672-14977792 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG12219/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12219.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.313 C 0.191 G 0.187 T 0.309 Background letter frequencies (from file dataset with add-one prior applied): A 0.313 C 0.191 G 0.187 T 0.309 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCTGTGKS MEME-1 width = 8 sites = 16 llr = 156 E-value = 5.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGTGKS MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a3::::4 probability G a:1a2a56 matrix T ::7:8:5: bits 2.4 ** * * 2.2 ** * * 1.9 ** * * 1.7 ** * * Relative 1.5 ** * * * Entropy 1.2 ** *** * (14.1 bits) 1.0 ** ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCTGTGGG consensus C TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGKS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:10238153-10238273 89 4.17e-06 acacacTCGC GCTGTGGG ATGAAAAGGG chr3L:3226278-3226398 83 1.11e-05 gtgtgtgcct gctgtgtg tgagtgtgcc chr3R:13320007-13320127 34 1.11e-05 ATACTTTCTG GCTGTGTG ACCAATGAAA chrX:6308950-6309070 94 1.11e-05 ACTGTTCTTT GCTGTGTG TCTGTGTGTG chr2L:7519018-7519138 10 1.79e-05 TTTTATTTG GCTGTGGC TAATAATCTT chr2R:23611362-23611482 82 1.79e-05 TTTGCTGATA GCTGTGGC TGTAGCTGCT chr2R:18397627-18397747 74 3.17e-05 CTATCTATTA GCTGTGTC AATATTTGAT chr2L:10238134-10238254 37 3.17e-05 CACTTAGCAT GCTGGGGG TGCTCACGGA chrX:10582193-10582313 31 3.17e-05 atccaACACG GCCGTGTG TGTCTGTCTG chr3L:17531523-17531643 19 3.17e-05 AACGGGTGGT GCTGGGGG ATTTGGTCGC chr3R:11338415-11338535 108 3.17e-05 AAAGTAGCCA GCCGTGTG GCGGT chrX:5989538-5989658 105 3.17e-05 CTTGGCCGCA GCTGTGTC ATTTGGGC chr3R:29083981-29084101 61 3.44e-05 TGTGTCGAGT GCCGTGGC GAAAGAGACG chr2R:24881604-24881724 61 3.44e-05 ATAATAAATC GCCGTGGC TGCGCATTAT chr3L:15706317-15706437 76 3.85e-05 ATTGTTGTCC GCTGGGTG TCGTTGGGTT chr3L:19132746-19132866 42 4.95e-05 GCGCCCCCTG GCGGTGGG AAGCGACAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGKS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:10238153-10238273 4.2e-06 88_[+1]_24 chr3L:3226278-3226398 1.1e-05 82_[+1]_30 chr3R:13320007-13320127 1.1e-05 33_[+1]_79 chrX:6308950-6309070 1.1e-05 93_[+1]_19 chr2L:7519018-7519138 1.8e-05 9_[+1]_103 chr2R:23611362-23611482 1.8e-05 81_[+1]_31 chr2R:18397627-18397747 3.2e-05 73_[+1]_39 chr2L:10238134-10238254 3.2e-05 36_[+1]_76 chrX:10582193-10582313 3.2e-05 30_[+1]_82 chr3L:17531523-17531643 3.2e-05 18_[+1]_94 chr3R:11338415-11338535 3.2e-05 107_[+1]_5 chrX:5989538-5989658 3.2e-05 104_[+1]_8 chr3R:29083981-29084101 3.4e-05 60_[+1]_52 chr2R:24881604-24881724 3.4e-05 60_[+1]_52 chr3L:15706317-15706437 3.9e-05 75_[+1]_37 chr3L:19132746-19132866 5e-05 41_[+1]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGKS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGTGKS width=8 seqs=16 chr2R:10238153-10238273 ( 89) GCTGTGGG 1 chr3L:3226278-3226398 ( 83) GCTGTGTG 1 chr3R:13320007-13320127 ( 34) GCTGTGTG 1 chrX:6308950-6309070 ( 94) GCTGTGTG 1 chr2L:7519018-7519138 ( 10) GCTGTGGC 1 chr2R:23611362-23611482 ( 82) GCTGTGGC 1 chr2R:18397627-18397747 ( 74) GCTGTGTC 1 chr2L:10238134-10238254 ( 37) GCTGGGGG 1 chrX:10582193-10582313 ( 31) GCCGTGTG 1 chr3L:17531523-17531643 ( 19) GCTGGGGG 1 chr3R:11338415-11338535 ( 108) GCCGTGTG 1 chrX:5989538-5989658 ( 105) GCTGTGTC 1 chr3R:29083981-29084101 ( 61) GCCGTGGC 1 chr2R:24881604-24881724 ( 61) GCCGTGGC 1 chr3L:15706317-15706437 ( 76) GCTGGGTG 1 chr3L:19132746-19132866 ( 42) GCGGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGKS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 5.7e+003 -1064 -1064 242 -1064 -1064 239 -1064 -1064 -1064 39 -158 115 -1064 -1064 242 -1064 -1064 -1064 0 139 -1064 -1064 242 -1064 -1064 -1064 142 69 -1064 98 174 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGKS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 5.7e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.062500 0.687500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.187500 0.812500 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.375000 0.625000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGTGKS MEME-1 regular expression -------------------------------------------------------------------------------- GC[TC]GTG[GT][GC] -------------------------------------------------------------------------------- Time 7.95 secs. ******************************************************************************** ******************************************************************************** MOTIF CACACACA MEME-2 width = 8 sites = 35 llr = 296 E-value = 2.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :9:9:618 pos.-specific C 8:a:a19: probability G :1:1:2:2 matrix T 2::::1:: bits 2.4 * * 2.2 * * 1.9 * * * 1.7 * * * Relative 1.5 *** * * Entropy 1.2 ***** * (12.2 bits) 1.0 ***** ** 0.7 ***** ** 0.5 ***** ** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus T G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:14977672-14977792 94 1.28e-05 cactcgcata cacacaca GCCGTTTGCC chr3R:22781559-22781679 53 1.28e-05 cacacacgca cacacaca cacaTAGAGG chr2L:12507723-12507843 18 1.28e-05 ATAATCGCGA CACACACa gagagagaga chr2L:6455129-6455249 44 1.28e-05 TTTacacacg cacacaca cgcacacgta chr2R:7381793-7381913 19 1.28e-05 CGCTCACACG CACACACA AATACTCGCA chr2R:10238153-10238273 76 1.28e-05 tgcccactcg cacacaca cTCGCGCTGT chrX:13088690-13088810 5 1.28e-05 TGTa cacacaca cacgcgcaca chr2R:13576382-13576502 112 1.28e-05 GCCCcaaaca cacacaca c chr3R:7103613-7103733 65 1.28e-05 cacacacaca cacacaca cacacacaca chr2L:20890049-20890169 101 2.04e-05 TGTATATGGA CACACGCA CTTTGCAAAC chr3R:15286789-15286909 88 2.04e-05 GCACACGTGC CACACGCA gagaaagaga chr3R:17079363-17079483 98 2.80e-05 GTCACCCTTG Cacacacg tacgtactgt chr2R:15135649-15135769 54 3.26e-05 GCACAGCACC CACACGCG CGCTTTTGCT chr3R:15927339-15927459 24 4.52e-05 CAAAAAGGTA CACACTCA GTTAATAACA chr2L:5610234-5610354 69 4.52e-05 TCAATGAAAC CACACTCA ACAGATGAAA chr3L:20731037-20731157 68 8.13e-05 CAAACACCGA CACGCACA TTGGGACACG chr2R:17274134-17274254 27 8.13e-05 TAAAGACATA CACGCACA CCAATGCAAA chr3R:29083981-29084101 31 8.13e-05 CTTACATATG TACACACA AACCAGACTC chr3L:14028578-14028698 101 8.13e-05 CTGTGAGacg cacgcaca cccgctcaca chr3R:11688382-11688502 51 8.13e-05 ATCAACAGTT TACACACA TTTATTTGGT chr3R:13549611-13549731 42 8.13e-05 ACAGCTCTCT TACACACA TAAATGGCAA chr2R:19413332-19413452 70 8.13e-05 TGCTGCGGGA CACACCCA TGTCTTTCAT chr2L:5547470-5547590 113 8.13e-05 AACAAGCGAG TACACACA chr3R:6667367-6667487 36 9.65e-05 ATGTCGTCGT CGCACACA AGACAACACT chr2L:8100904-8101024 36 9.65e-05 TACTTTTTAT CACACTCG GCGACAGTTC chr2R:22539407-22539527 80 9.65e-05 CCTCTGCTGC CACACTCG CACTTGCTCT chr3R:22878565-22878685 14 9.65e-05 GAAGATACTT CACACTCG GACTATGATC chr3R:16069413-16069533 105 1.13e-04 TTAACATATT TACACGCA tcgtttgt chr2R:13261854-13261974 1 1.13e-04 . TACACGCA TTACAACTGG chr2L:10505031-10505151 59 1.60e-04 CAGTGCCGGC CACACAAA TATTGACACG chr3L:20389182-20389302 74 1.88e-04 TTCGGTGTAC CACACACT TATCTCGCAC chr3L:17404785-17404905 86 2.28e-04 ATTTTTAGTC CACACGAA ATTATATATA chrX:20511581-20511701 27 2.43e-04 GCAAAGAAAT CGCACGCG AAACTTTTTT chr2R:13450054-13450174 69 2.43e-04 ATGGATTTGC CACACAAG TCTTATTGGT chr2L:10238134-10238254 64 2.81e-04 ATGGTATCAA TACACCCA AATGGCCGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14977672-14977792 1.3e-05 93_[+2]_19 chr3R:22781559-22781679 1.3e-05 52_[+2]_60 chr2L:12507723-12507843 1.3e-05 17_[+2]_95 chr2L:6455129-6455249 1.3e-05 43_[+2]_69 chr2R:7381793-7381913 1.3e-05 18_[+2]_94 chr2R:10238153-10238273 1.3e-05 75_[+2]_37 chrX:13088690-13088810 1.3e-05 4_[+2]_108 chr2R:13576382-13576502 1.3e-05 111_[+2]_1 chr3R:7103613-7103733 1.3e-05 64_[+2]_48 chr2L:20890049-20890169 2e-05 100_[+2]_12 chr3R:15286789-15286909 2e-05 87_[+2]_25 chr3R:17079363-17079483 2.8e-05 97_[+2]_15 chr2R:15135649-15135769 3.3e-05 53_[+2]_59 chr3R:15927339-15927459 4.5e-05 23_[+2]_89 chr2L:5610234-5610354 4.5e-05 68_[+2]_44 chr3L:20731037-20731157 8.1e-05 67_[+2]_45 chr2R:17274134-17274254 8.1e-05 26_[+2]_86 chr3R:29083981-29084101 8.1e-05 30_[+2]_82 chr3L:14028578-14028698 8.1e-05 100_[+2]_12 chr3R:11688382-11688502 8.1e-05 50_[+2]_62 chr3R:13549611-13549731 8.1e-05 41_[+2]_71 chr2R:19413332-19413452 8.1e-05 69_[+2]_43 chr2L:5547470-5547590 8.1e-05 112_[+2] chr3R:6667367-6667487 9.6e-05 35_[+2]_77 chr2L:8100904-8101024 9.6e-05 35_[+2]_77 chr2R:22539407-22539527 9.6e-05 79_[+2]_33 chr3R:22878565-22878685 9.6e-05 13_[+2]_99 chr3R:16069413-16069533 0.00011 104_[+2]_8 chr2R:13261854-13261974 0.00011 [+2]_112 chr2L:10505031-10505151 0.00016 58_[+2]_54 chr3L:20389182-20389302 0.00019 73_[+2]_39 chr3L:17404785-17404905 0.00023 85_[+2]_27 chrX:20511581-20511701 0.00024 26_[+2]_86 chr2R:13450054-13450174 0.00024 68_[+2]_44 chr2L:10238134-10238254 0.00028 63_[+2]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACA width=8 seqs=35 chr3L:14977672-14977792 ( 94) CACACACA 1 chr3R:22781559-22781679 ( 53) CACACACA 1 chr2L:12507723-12507843 ( 18) CACACACA 1 chr2L:6455129-6455249 ( 44) CACACACA 1 chr2R:7381793-7381913 ( 19) CACACACA 1 chr2R:10238153-10238273 ( 76) CACACACA 1 chrX:13088690-13088810 ( 5) CACACACA 1 chr2R:13576382-13576502 ( 112) CACACACA 1 chr3R:7103613-7103733 ( 65) CACACACA 1 chr2L:20890049-20890169 ( 101) CACACGCA 1 chr3R:15286789-15286909 ( 88) CACACGCA 1 chr3R:17079363-17079483 ( 98) CACACACG 1 chr2R:15135649-15135769 ( 54) CACACGCG 1 chr3R:15927339-15927459 ( 24) CACACTCA 1 chr2L:5610234-5610354 ( 69) CACACTCA 1 chr3L:20731037-20731157 ( 68) CACGCACA 1 chr2R:17274134-17274254 ( 27) CACGCACA 1 chr3R:29083981-29084101 ( 31) TACACACA 1 chr3L:14028578-14028698 ( 101) CACGCACA 1 chr3R:11688382-11688502 ( 51) TACACACA 1 chr3R:13549611-13549731 ( 42) TACACACA 1 chr2R:19413332-19413452 ( 70) CACACCCA 1 chr2L:5547470-5547590 ( 113) TACACACA 1 chr3R:6667367-6667487 ( 36) CGCACACA 1 chr2L:8100904-8101024 ( 36) CACACTCG 1 chr2R:22539407-22539527 ( 80) CACACTCG 1 chr3R:22878565-22878685 ( 14) CACACTCG 1 chr3R:16069413-16069533 ( 105) TACACGCA 1 chr2R:13261854-13261974 ( 1) TACACGCA 1 chr2L:10505031-10505151 ( 59) CACACAAA 1 chr3L:20389182-20389302 ( 74) CACACACT 1 chr3L:17404785-17404905 ( 86) CACACGAA 1 chrX:20511581-20511701 ( 27) CGCACGCG 1 chr2R:13450054-13450174 ( 69) CACACAAG 1 chr2L:10238134-10238254 ( 64) TACACCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0411 E= 2.4e+003 -1177 207 -1177 -63 159 -1177 -171 -1177 -1177 239 -1177 -1177 154 -1177 -112 -1177 -1177 239 -1177 -1177 94 -174 10 -111 -187 226 -1177 -1177 130 -1177 10 -343 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 2.4e+003 0.000000 0.800000 0.000000 0.200000 0.942857 0.000000 0.057143 0.000000 0.000000 1.000000 0.000000 0.000000 0.914286 0.000000 0.085714 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.057143 0.200000 0.142857 0.085714 0.914286 0.000000 0.000000 0.771429 0.000000 0.200000 0.028571 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-2 regular expression -------------------------------------------------------------------------------- [CT]ACAC[AG]C[AG] -------------------------------------------------------------------------------- Time 14.30 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGCMCHG MEME-3 width = 8 sites = 18 llr = 171 E-value = 3.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGCMCHG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::4:3: pos.-specific C :::a6943 probability G a:a::117 matrix T :a::::3: bits 2.4 * ** 2.2 * ** 1.9 * ** * 1.7 **** * Relative 1.5 **** * * Entropy 1.2 **** * * (13.7 bits) 1.0 ****** * 0.7 ****** * 0.5 ****** * 0.2 ******** 0.0 -------- Multilevel GTGCCCCG consensus A AC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCMCHG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16655892-16656012 77 2.69e-06 GAACCGTGTT GTGCCCCG CTCAACATGT chrX:11451208-11451328 79 2.69e-06 GGCATTCACT GTGCCCCG AAATACCAGC chr3L:1376118-1376238 109 1.14e-05 GTACTGTTCG GTGCACCG TTTA chr2R:11190923-11191043 61 1.14e-05 GATAAAGTGC GTGCCCTG TACATAGGCA chr2L:20890049-20890169 72 1.14e-05 TTTTCTTTCA GTGCACCG ATTCACCCAT chr2R:24943215-24943335 5 1.14e-05 AATT GTGCCCTG CGAAAGGTAA chr2L:7154976-7155096 12 2.57e-05 AGTAATGGCA GTGCACTG CGAGAATTTT chr3L:6817060-6817180 26 3.30e-05 TCCCAAATGG GTGCACAG AGAGAAATTG chrX:10825437-10825557 7 3.30e-05 TATTTA GTGCACAG TAAATGAAAA chr2R:15134250-15134370 69 3.30e-05 TAAAATCGAA GTGCACAG TTCCCAGTCC chr3R:22781559-22781679 16 4.19e-05 ACACTGGGAG GTGCCCTC Tcacagatac chr3R:29068958-29069078 50 4.19e-05 TTTCATTTAA GTGCACCC CCAAGCATCA chrX:2061277-2061397 26 4.64e-05 CCATTTGTTA GTGCCCAC CAAAAGGAAG chr3L:20664074-20664194 74 4.64e-05 CTTATTTTCG GTGCCCAC TGTTTGCTTT chr3L:14028578-14028698 52 4.90e-05 ATTTGCCAAG GTGCCCGG GTTACCCTGT chr3R:11338415-11338535 74 5.17e-05 AGTTTTCGGT GTGCCGCG AAATGAAGTG chr3L:3226278-3226398 96 5.17e-05 gtgtgtgagt gtgccgcg tgcgtaagtg chr3R:19472366-19472486 89 5.89e-05 ACATTGGTGT GTGCACTC CGATGCGTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCMCHG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16655892-16656012 2.7e-06 76_[+3]_36 chrX:11451208-11451328 2.7e-06 78_[+3]_34 chr3L:1376118-1376238 1.1e-05 108_[+3]_4 chr2R:11190923-11191043 1.1e-05 60_[+3]_52 chr2L:20890049-20890169 1.1e-05 71_[+3]_41 chr2R:24943215-24943335 1.1e-05 4_[+3]_108 chr2L:7154976-7155096 2.6e-05 11_[+3]_101 chr3L:6817060-6817180 3.3e-05 25_[+3]_87 chrX:10825437-10825557 3.3e-05 6_[+3]_106 chr2R:15134250-15134370 3.3e-05 68_[+3]_44 chr3R:22781559-22781679 4.2e-05 15_[+3]_97 chr3R:29068958-29069078 4.2e-05 49_[+3]_63 chrX:2061277-2061397 4.6e-05 25_[+3]_87 chr3L:20664074-20664194 4.6e-05 73_[+3]_39 chr3L:14028578-14028698 4.9e-05 51_[+3]_61 chr3R:11338415-11338535 5.2e-05 73_[+3]_39 chr3L:3226278-3226398 5.2e-05 95_[+3]_17 chr3R:19472366-19472486 5.9e-05 88_[+3]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCMCHG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGCMCHG width=8 seqs=18 chrX:16655892-16656012 ( 77) GTGCCCCG 1 chrX:11451208-11451328 ( 79) GTGCCCCG 1 chr3L:1376118-1376238 ( 109) GTGCACCG 1 chr2R:11190923-11191043 ( 61) GTGCCCTG 1 chr2L:20890049-20890169 ( 72) GTGCACCG 1 chr2R:24943215-24943335 ( 5) GTGCCCTG 1 chr2L:7154976-7155096 ( 12) GTGCACTG 1 chr3L:6817060-6817180 ( 26) GTGCACAG 1 chrX:10825437-10825557 ( 7) GTGCACAG 1 chr2R:15134250-15134370 ( 69) GTGCACAG 1 chr3R:22781559-22781679 ( 16) GTGCCCTC 1 chr3R:29068958-29069078 ( 50) GTGCACCC 1 chrX:2061277-2061397 ( 26) GTGCCCAC 1 chr3L:20664074-20664194 ( 74) GTGCCCAC 1 chr3L:14028578-14028698 ( 52) GTGCCCGG 1 chr3R:11338415-11338535 ( 74) GTGCCGCG 1 chr3L:3226278-3226398 ( 96) GTGCCGCG 1 chr3R:19472366-19472486 ( 89) GTGCACTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCMCHG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 3.3e+003 -1081 -1081 242 -1081 -1081 -1081 -1081 169 -1081 -1081 242 -1081 -1081 239 -1081 -1081 50 154 -1081 -1081 -1081 222 -75 -1081 -17 103 -175 -15 -1081 54 195 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCMCHG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 3.3e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.444444 0.555556 0.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.277778 0.388889 0.055556 0.277778 0.000000 0.277778 0.722222 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCMCHG MEME-3 regular expression -------------------------------------------------------------------------------- GTGC[CA]C[CAT][GC] -------------------------------------------------------------------------------- Time 20.50 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGRCWGC MEME-4 width = 8 sites = 15 llr = 147 E-value = 3.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGRCWGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::5:7:: pos.-specific C :a:19::a probability G a:931:a: matrix T ::11:3:: bits 2.4 ** ** 2.2 ** ** 1.9 ** * ** 1.7 *** * ** Relative 1.5 *** * ** Entropy 1.2 *** * ** (14.1 bits) 1.0 *** * ** 0.7 *** **** 0.5 *** **** 0.2 ******** 0.0 -------- Multilevel GCGACAGC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGRCWGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11660618-11660738 108 4.46e-06 ATCAGCAGCT GCGACAGC GACGG chr3R:17079363-17079483 79 4.46e-06 TCTCCCTGGG GCGACAGC TGTCACCCTT chr3L:19132746-19132866 52 4.46e-06 GCGGTGGGAA GCGACAGC ACACATGAAC chr2L:8694338-8694458 56 7.13e-06 TCGCAGCTCC GCGGCAGC GACTCAATAA chr3R:5300741-5300861 85 7.13e-06 CGCCCGTGGA GCGGCAGC AACGGTATAA chr2R:19138046-19138166 73 1.15e-05 TGCTCGATAG GCGACTGC CGATAACTGA chr3R:29083981-29084101 85 1.69e-05 GACGGGTATA GCGCCAGC GAAAGAGAGA chr2L:12457338-12457458 106 1.69e-05 TAACAAAACG GCGGCTGC AGCAGAT chr2R:19413332-19413452 7 2.13e-05 ACCGGC GCGTCAGC GTCAGACAAT chr2R:14486993-14487113 96 2.40e-05 AATATAAGGC GCGCCTGC AATGACAACG chr2L:9908741-9908861 9 2.84e-05 GGGAAAAT GCGAGAGC GATCCGTTTA chrX:3019679-3019799 20 3.53e-05 TGGGTCAGTG GCGTCTGC AGAAGGTGCA chr3L:1216604-1216724 42 4.27e-05 TCAACTGAAA GCTACAGC GAAGATGGAA chr3R:26892932-26893052 84 4.71e-05 GCTCATAACA GCTGCAGC TAATGAGCAT chr2R:11190923-11191043 32 5.14e-05 AGATACATAA GCGAGTGC TTAGCAATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGRCWGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11660618-11660738 4.5e-06 107_[+4]_5 chr3R:17079363-17079483 4.5e-06 78_[+4]_34 chr3L:19132746-19132866 4.5e-06 51_[+4]_61 chr2L:8694338-8694458 7.1e-06 55_[+4]_57 chr3R:5300741-5300861 7.1e-06 84_[+4]_28 chr2R:19138046-19138166 1.2e-05 72_[+4]_40 chr3R:29083981-29084101 1.7e-05 84_[+4]_28 chr2L:12457338-12457458 1.7e-05 105_[+4]_7 chr2R:19413332-19413452 2.1e-05 6_[+4]_106 chr2R:14486993-14487113 2.4e-05 95_[+4]_17 chr2L:9908741-9908861 2.8e-05 8_[+4]_104 chrX:3019679-3019799 3.5e-05 19_[+4]_93 chr3L:1216604-1216724 4.3e-05 41_[+4]_71 chr3R:26892932-26893052 4.7e-05 83_[+4]_29 chr2R:11190923-11191043 5.1e-05 31_[+4]_81 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGRCWGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGRCWGC width=8 seqs=15 chrX:11660618-11660738 ( 108) GCGACAGC 1 chr3R:17079363-17079483 ( 79) GCGACAGC 1 chr3L:19132746-19132866 ( 52) GCGACAGC 1 chr2L:8694338-8694458 ( 56) GCGGCAGC 1 chr3R:5300741-5300861 ( 85) GCGGCAGC 1 chr2R:19138046-19138166 ( 73) GCGACTGC 1 chr3R:29083981-29084101 ( 85) GCGCCAGC 1 chr2L:12457338-12457458 ( 106) GCGGCTGC 1 chr2R:19413332-19413452 ( 7) GCGTCAGC 1 chr2R:14486993-14487113 ( 96) GCGCCTGC 1 chr2L:9908741-9908861 ( 9) GCGAGAGC 1 chrX:3019679-3019799 ( 20) GCGTCTGC 1 chr3L:1216604-1216724 ( 42) GCTACAGC 1 chr3R:26892932-26893052 ( 84) GCTGCAGC 1 chr2R:11190923-11191043 ( 32) GCGAGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGRCWGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8033 E= 3.2e+003 -1055 -1055 242 -1055 -1055 239 -1055 -1055 -1055 -1055 221 -121 57 -51 51 -121 -1055 218 -49 -1055 109 -1055 -1055 11 -1055 -1055 242 -1055 -1055 239 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGRCWGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 3.2e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.866667 0.133333 0.466667 0.133333 0.266667 0.133333 0.000000 0.866667 0.133333 0.000000 0.666667 0.000000 0.000000 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGRCWGC MEME-4 regular expression -------------------------------------------------------------------------------- GCG[AG]C[AT]GC -------------------------------------------------------------------------------- Time 26.68 secs. ******************************************************************************** ******************************************************************************** MOTIF AGCGGAGC MEME-5 width = 8 sites = 3 llr = 37 E-value = 7.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGCGGAGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A a::::a:: pos.-specific C ::a::::a probability G :a:aa:a: matrix T :::::::: bits 2.4 **** ** 2.2 **** ** 1.9 **** ** 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (17.8 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGCGGAGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCGGAGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:19935243-19935363 31 4.37e-06 TCCGACTGCC AGCGGAGC Agcacgtact chr3L:19132746-19132866 18 4.37e-06 GGCCAGCGGA AGCGGAGC TGTAGAGCGC chr2L:6465655-6465775 102 4.37e-06 AAAGCTCTCC AGCGGAGC GGTTACAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCGGAGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:19935243-19935363 4.4e-06 30_[+5]_82 chr3L:19132746-19132866 4.4e-06 17_[+5]_95 chr2L:6465655-6465775 4.4e-06 101_[+5]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCGGAGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGCGGAGC width=8 seqs=3 chr2L:19935243-19935363 ( 31) AGCGGAGC 1 chr3L:19132746-19132866 ( 18) AGCGGAGC 1 chr2L:6465655-6465775 ( 102) AGCGGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCGGAGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 7.9e+004 167 -823 -823 -823 -823 -823 242 -823 -823 239 -823 -823 -823 -823 242 -823 -823 -823 242 -823 167 -823 -823 -823 -823 -823 242 -823 -823 239 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCGGAGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 7.9e+004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCGGAGC MEME-5 regular expression -------------------------------------------------------------------------------- AGCGGAGC -------------------------------------------------------------------------------- Time 32.83 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6308950-6309070 1.26e-02 93_[+1(1.11e-05)]_19 chr3R:27426815-27426935 9.95e-01 120 chr3R:13320007-13320127 3.55e-03 33_[+1(1.11e-05)]_79 chr3R:23803812-23803932 1.98e-02 62_[+3(9.59e-05)]_50 chr2R:7680890-7681010 8.19e-02 120 chr2R:23567377-23567497 4.97e-01 120 chr3L:14172700-14172820 2.85e-01 120 chr2L:13258852-13258972 9.95e-01 120 chr2L:12498682-12498802 8.35e-02 30_[+4(7.71e-05)]_82 chr2R:13261854-13261974 3.85e-01 120 chr2L:3100917-3101037 5.97e-01 120 chr3R:7103613-7103733 3.41e-03 54_[+2(1.28e-05)]_[+2(1.28e-05)]_\ [+2(1.28e-05)]_[+2(1.28e-05)]_34 chrX:18837171-18837291 9.21e-01 120 chr2R:11426856-11426976 6.36e-01 120 chr2L:5610234-5610354 1.06e-01 68_[+2(4.52e-05)]_44 chr3R:17655159-17655279 2.53e-01 120 chr3R:10053689-10053809 7.29e-01 120 chr3L:15597188-15597308 8.14e-01 120 chr3L:8835044-8835164 3.85e-01 120 chrX:5989538-5989658 1.13e-02 104_[+1(3.17e-05)]_8 chr3R:15927339-15927459 1.09e-01 23_[+2(4.52e-05)]_89 chr3L:5096789-5096909 7.15e-02 120 chr2R:20252187-20252307 7.91e-01 120 chr3L:12223054-12223174 1.00e+00 120 chrX:14634812-14634932 8.41e-01 120 chr3R:17818954-17819074 8.26e-01 120 chr3L:7013669-7013789 2.12e-01 120 chr2R:23551164-23551284 5.38e-01 120 chr3R:21163375-21163495 4.66e-01 120 chr2L:5743644-5743764 9.84e-01 120 chrX:13088149-13088269 7.56e-01 120 chr3R:9888843-9888963 9.67e-01 120 chr3R:8256203-8256323 1.00e+00 120 chr3L:20664074-20664194 3.25e-02 73_[+3(4.64e-05)]_39 chr3L:3226278-3226398 3.39e-04 69_[+1(1.11e-05)]_5_[+1(1.11e-05)]_\ 5_[+3(5.17e-05)]_17 chr3L:16482280-16482400 8.27e-01 120 chrX:12248997-12249117 9.48e-01 120 chr3R:8784923-8785043 6.55e-01 120 chr3R:30461668-30461788 8.08e-01 120 chr3R:21561460-21561580 4.80e-03 120 chr3R:5300741-5300861 1.58e-03 84_[+4(7.13e-06)]_28 chr2R:24292842-24292962 3.09e-01 120 chr2R:14486993-14487113 4.10e-02 95_[+4(2.40e-05)]_17 chr3R:22878565-22878685 3.03e-01 13_[+2(9.65e-05)]_99 chr2R:16610063-16610183 9.87e-01 120 chr3R:18169191-18169311 9.33e-01 120 chr2L:8552562-8552682 2.81e-01 120 chr3R:22573722-22573842 2.66e-01 120 chr2L:2168319-2168439 1.55e-01 120 chr3L:22665272-22665392 8.88e-01 120 chr2R:20572629-20572749 8.16e-01 120 chr2R:12547710-12547830 9.99e-01 120 chr3R:9516589-9516709 1.50e-01 120 chr2R:23202143-23202263 9.22e-01 120 chr2L:1230842-1230962 7.10e-01 120 chrX:524480-524600 3.35e-01 120 chr2R:13450054-13450174 2.91e-02 120 chr3R:7779755-7779875 3.60e-01 120 chr3L:9425831-9425951 8.60e-01 120 chr2R:13576382-13576502 2.00e-02 14_[+2(1.28e-05)]_87_[+2(1.28e-05)]_\ 3 chr3R:17966133-17966253 2.79e-01 120 chr2R:12008901-12009021 9.17e-02 120 chr2R:19138046-19138166 7.49e-02 72_[+4(1.15e-05)]_40 chr3R:9085443-9085563 9.97e-01 120 chr2R:18605510-18605630 3.11e-01 120 chr3R:21629863-21629983 3.70e-01 120 chr2R:18273455-18273575 7.93e-01 120 chrX:12547793-12547913 1.44e-01 120 chr3R:11338415-11338535 4.18e-03 73_[+3(5.17e-05)]_26_[+1(3.17e-05)]_\ 5 chrX:5084992-5085112 9.94e-01 120 chr2L:892563-892683 4.24e-01 120 chr2R:15134250-15134370 2.23e-01 68_[+3(3.30e-05)]_44 chr3R:30134822-30134942 9.47e-01 120 chr2R:23578545-23578665 9.84e-01 120 chr2L:14123710-14123830 6.38e-01 120 chr2L:5547470-5547590 4.06e-02 112_[+2(8.13e-05)] chrX:13088690-13088810 5.64e-03 4_[+2(1.28e-05)]_108 chr2L:10351360-10351480 6.54e-01 120 chrX:10573678-10573798 5.60e-01 120 chrX:10067669-10067789 8.59e-01 120 chr3L:16840612-16840732 9.97e-01 120 chr3R:26892932-26893052 1.20e-01 83_[+4(4.71e-05)]_29 chrX:6663263-6663383 5.19e-01 120 chr2L:3748820-3748940 6.25e-01 120 chr2R:23739378-23739498 4.65e-01 120 chr2L:8080759-8080879 9.76e-01 120 chr3R:15286789-15286909 1.27e-03 87_[+2(2.04e-05)]_25 chr3L:15706317-15706437 8.25e-02 75_[+1(3.85e-05)]_37 chr2L:12457338-12457458 8.34e-03 105_[+4(1.69e-05)]_7 chr2L:10505031-10505151 9.52e-03 120 chr3L:960736-960856 1.21e-01 120 chr3R:21271339-21271459 9.30e-01 120 chr2L:9908741-9908861 7.98e-03 8_[+4(2.84e-05)]_104 chr2R:13470285-13470405 4.03e-01 120 chr2L:7154976-7155096 9.25e-02 11_[+3(2.57e-05)]_101 chrX:5095751-5095871 1.00e+00 120 chr3L:8604420-8604540 9.98e-01 120 chr2R:10059156-10059276 5.25e-01 120 chr2L:20840626-20840746 4.22e-01 120 chr2R:9875106-9875226 2.81e-01 120 chr2L:7492068-7492188 1.00e+00 120 chr3R:21112575-21112695 9.28e-02 120 chrX:10825437-10825557 2.10e-02 6_[+3(3.30e-05)]_106 chr2L:17583123-17583243 3.94e-01 120 chr2R:19413332-19413452 3.40e-06 6_[+4(2.13e-05)]_55_[+2(8.13e-05)]_\ 43 chrX:13789064-13789184 9.86e-01 120 chr2R:22539407-22539527 3.26e-02 79_[+2(9.65e-05)]_33 chr2R:10238153-10238273 2.72e-05 55_[+2(1.28e-05)]_12_[+2(1.28e-05)]_\ 5_[+1(4.17e-06)]_24 chr2R:23611362-23611482 8.56e-03 81_[+1(1.79e-05)]_31 chr3L:17531523-17531643 1.25e-02 18_[+1(3.17e-05)]_94 chr3R:13549611-13549731 3.55e-01 41_[+2(8.13e-05)]_71 chr3R:9083524-9083644 9.98e-01 120 chr3R:11688382-11688502 3.08e-02 50_[+2(8.13e-05)]_62 chrX:10582193-10582313 6.62e-03 30_[+1(3.17e-05)]_82 chr2R:24881604-24881724 2.97e-03 60_[+1(3.44e-05)]_52 chr3L:17404785-17404905 2.97e-01 120 chr2R:24943215-24943335 1.37e-02 4_[+3(1.14e-05)]_108 chr2R:22384396-22384516 9.95e-01 120 chr3L:4221436-4221556 2.50e-01 120 chr3R:27289832-27289952 1.48e-01 120 chr3R:11661897-11662017 8.59e-01 120 chr2L:6461674-6461794 2.06e-01 120 chr2R:9546553-9546673 6.80e-01 120 chr3R:19848014-19848134 1.33e-01 120 chr3L:20406471-20406591 3.45e-01 120 chr3R:23730174-23730294 7.92e-02 120 chr3R:20263851-20263971 7.19e-02 [+4(9.13e-05)]_112 chr2R:7381793-7381913 4.93e-02 18_[+2(1.28e-05)]_94 chr2L:10238134-10238254 8.32e-04 36_[+1(3.17e-05)]_76 chr2R:22270524-22270644 1.37e-01 120 chr3L:8018733-8018853 6.67e-01 120 chr3L:10337696-10337816 9.95e-01 120 chr2L:9235593-9235713 6.37e-01 120 chr3L:1216604-1216724 8.25e-02 41_[+4(4.27e-05)]_71 chr3R:10648946-10649066 9.17e-01 120 chr2L:6465655-6465775 8.67e-03 101_[+5(4.37e-06)]_11 chr2R:15135649-15135769 1.71e-03 53_[+2(3.26e-05)]_59 chr3L:19132746-19132866 2.05e-07 17_[+5(4.37e-06)]_16_[+1(4.95e-05)]_\ 2_[+4(4.46e-06)]_61 chr3R:23445371-23445491 3.88e-01 120 chr3R:25885273-25885393 9.89e-01 120 chr3L:11303937-11304057 9.99e-01 120 chr3L:14028578-14028698 3.50e-03 51_[+3(4.90e-05)]_41_[+2(8.13e-05)]_\ 12 chr3R:29690572-29690692 9.98e-01 120 chrX:9664558-9664678 1.00e+00 120 chr3R:29083981-29084101 1.58e-06 30_[+2(8.13e-05)]_22_[+1(3.44e-05)]_\ 16_[+4(1.69e-05)]_28 chr2L:8694338-8694458 4.82e-03 55_[+4(7.13e-06)]_57 chr3R:31687920-31688040 7.71e-01 120 chr2R:18397627-18397747 1.73e-01 73_[+1(3.17e-05)]_39 chr2L:8938148-8938268 9.74e-01 120 chr2R:17274134-17274254 4.03e-01 26_[+2(8.13e-05)]_86 chr2L:8100904-8101024 4.63e-02 35_[+2(9.65e-05)]_77 chr2L:9943604-9943724 9.58e-01 120 chr2L:11950034-11950154 7.81e-01 120 chr3R:16069413-16069533 6.60e-06 8_[+5(2.36e-05)]_3_[+1(7.72e-05)]_\ 15_[+5(4.37e-06)]_70 chr2L:4403158-4403278 9.80e-01 120 chr2L:20890049-20890169 3.54e-03 71_[+3(1.14e-05)]_21_[+2(2.04e-05)]_\ 12 chr3R:17079363-17079483 1.48e-04 78_[+4(4.46e-06)]_11_[+2(2.80e-05)]_\ 15 chr3L:7869001-7869121 8.63e-01 120 chr3R:24010967-24011087 9.99e-01 120 chr3R:24206845-24206965 7.47e-01 120 chr3L:20731037-20731157 7.09e-02 67_[+2(8.13e-05)]_45 chr3R:23947156-23947276 5.07e-01 120 chr3R:14300106-14300226 7.56e-01 120 chr3L:1189234-1189354 3.86e-01 120 chr3R:26937555-26937675 1.45e-01 120 chr3L:9762157-9762277 9.82e-02 120 chr3L:6817060-6817180 7.23e-02 25_[+3(3.30e-05)]_87 chr2R:13482225-13482345 1.00e+00 120 chr3L:21065326-21065446 4.95e-01 120 chr2L:868457-868577 1.69e-01 120 chr3L:12668166-12668286 7.19e-02 120 chr3L:1414166-1414286 7.15e-01 120 chr3L:9028182-9028302 7.44e-01 120 chrX:4262796-4262916 8.85e-02 50_[+4(6.83e-05)]_62 chrX:11451208-11451328 7.24e-03 78_[+3(2.69e-06)]_34 chr3R:23387064-23387184 9.99e-01 120 chr2L:6455129-6455249 5.50e-03 43_[+2(1.28e-05)]_69 chrX:3019679-3019799 1.14e-03 19_[+4(3.53e-05)]_5_[+3(9.59e-05)]_\ 80 chr3R:8171599-8171719 9.96e-01 120 chr3R:10140389-10140509 9.92e-01 120 chrX:5639208-5639328 9.65e-01 120 chr2L:21218844-21218964 1.11e-01 120 chr2L:18377317-18377437 9.48e-01 120 chr2L:7519018-7519138 9.19e-02 9_[+1(1.79e-05)]_103 chr3R:26888458-26888578 9.85e-01 120 chr3L:4522032-4522152 3.88e-01 120 chr3L:5926064-5926184 3.25e-01 120 chr2L:1207596-1207716 8.50e-01 120 chr3L:20389182-20389302 2.09e-01 120 chr2R:11190923-11191043 5.64e-04 31_[+4(5.14e-05)]_21_[+3(1.14e-05)]_\ 52 chr3R:4846909-4847029 8.96e-01 120 chr3R:14470762-14470882 9.88e-01 120 chr3L:20471114-20471234 9.13e-01 120 chr3R:28677011-28677131 6.10e-01 120 chr2L:16819825-16819945 7.50e-01 120 chr2L:14441016-14441136 9.36e-01 120 chr2L:7494478-7494598 3.99e-01 120 chr3R:28857391-28857511 5.34e-01 120 chr2L:12507723-12507843 2.20e-02 17_[+2(1.28e-05)]_95 chr2L:3003547-3003667 5.51e-01 120 chr3R:10203695-10203815 5.40e-01 120 chrX:16854867-16854987 6.45e-01 120 chrX:2061277-2061397 5.18e-02 25_[+3(4.64e-05)]_87 chr3R:29068958-29069078 1.04e-01 49_[+3(4.19e-05)]_63 chrX:20511581-20511701 3.33e-01 120 chr3L:3450495-3450615 9.16e-01 120 chr3L:6218687-6218807 9.25e-01 120 chr2L:5096979-5097099 9.39e-01 120 chr3R:31309443-31309563 7.56e-02 120 chr3R:18242123-18242243 8.28e-01 120 chrX:3690760-3690880 9.54e-01 120 chr2R:8002310-8002430 9.93e-01 120 chr3L:14190146-14190266 9.53e-01 120 chr2L:19796174-19796294 3.17e-01 120 chr2L:19935243-19935363 7.81e-04 30_[+5(4.37e-06)]_82 chr3L:824553-824673 3.57e-01 120 chr3L:1376118-1376238 6.50e-02 108_[+3(1.14e-05)]_4 chr3R:22039648-22039768 2.82e-01 120 chr2L:20950794-20950914 8.40e-02 38_[+4(8.70e-05)]_74 chr2R:13008343-13008463 6.82e-01 120 chr3L:14555236-14555356 8.76e-01 120 chr3R:22260369-22260489 1.11e-01 120 chr3R:11809798-11809918 9.07e-01 120 chr3R:31134174-31134294 2.72e-01 120 chr3R:8744341-8744461 5.30e-01 120 chr3L:2159051-2159171 9.82e-01 120 chr3L:9511405-9511525 1.72e-01 69_[+5(2.36e-05)]_43 chr3R:16834787-16834907 8.65e-02 120 chr2R:11541250-11541370 4.33e-01 120 chr2R:18883650-18883770 9.97e-01 120 chr2R:13541482-13541602 1.74e-01 120 chrX:16655892-16656012 3.28e-03 76_[+3(2.69e-06)]_36 chr3R:29877005-29877125 4.32e-02 120 chr3L:19791846-19791966 8.22e-04 120 chr3R:6667367-6667487 2.66e-01 35_[+2(9.65e-05)]_77 chr3L:4288832-4288952 9.98e-01 120 chr2L:19377573-19377693 9.98e-01 120 chr3R:23919511-23919631 4.78e-01 120 chr3R:22781559-22781679 4.40e-04 15_[+3(4.19e-05)]_15_[+2(1.28e-05)]_\ 4_[+2(1.28e-05)]_62 chrX:11660618-11660738 6.52e-03 107_[+4(4.46e-06)]_5 chr2L:18328912-18329032 6.16e-01 120 chr3R:6468200-6468320 9.17e-01 120 chr3R:19472366-19472486 1.18e-03 88_[+3(5.89e-05)]_24 chr2R:12025203-12025323 9.78e-02 120 chr3L:16969791-16969911 1.54e-03 120 chr2R:6524846-6524966 9.37e-02 120 chr3L:6157708-6157828 9.95e-01 120 chr2L:10565842-10565962 6.53e-01 120 chr2L:4838599-4838719 1.87e-01 120 chr3L:14977672-14977792 1.62e-03 81_[+2(9.65e-05)]_4_[+2(1.28e-05)]_\ 19 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************