******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12155.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:123957-124077 1.0000 120 chrX:16598798-16598918 1.0000 120 chr2L:8030271-8030391 1.0000 120 chr3L:11765781-11765901 1.0000 120 chr2L:20426012-20426132 1.0000 120 chr3R:24038903-24039023 1.0000 120 chr2R:13189342-13189462 1.0000 120 chr3L:14992104-14992224 1.0000 120 chr3R:29457326-29457446 1.0000 120 chrX:18806523-18806643 1.0000 120 chr3L:5360135-5360255 1.0000 120 chrX:1287019-1287139 1.0000 120 chr3R:5778863-5778983 1.0000 120 chr3R:9869178-9869298 1.0000 120 chr3L:8065687-8065807 1.0000 120 chr3L:3964084-3964204 1.0000 120 chr2L:19054309-19054429 1.0000 120 chr3R:31669996-31670116 1.0000 120 chr2L:3656843-3656963 1.0000 120 chr3L:8576041-8576161 1.0000 120 chr2L:9493988-9494108 1.0000 120 chr3L:8576244-8576364 1.0000 120 chrX:19697022-19697142 1.0000 120 chr3L:1637740-1637860 1.0000 120 chr2L:16787710-16787830 1.0000 120 chr3R:32015478-32015598 1.0000 120 chrX:16599001-16599121 1.0000 120 chr3L:19896416-19896536 1.0000 120 chr2L:9460175-9460295 1.0000 120 chrX:7097260-7097380 1.0000 120 chr2R:15890930-15891050 1.0000 120 chr2R:7889453-7889573 1.0000 120 chr3L:12147121-12147241 1.0000 120 chr3R:29723291-29723411 1.0000 120 chr3R:22424800-22424920 1.0000 120 chr3R:30909189-30909309 1.0000 120 chr3L:16182951-16183071 1.0000 120 chrX:9686943-9687063 1.0000 120 chr2R:13183880-13184000 1.0000 120 chr3L:8060489-8060609 1.0000 120 chr2R:11293106-11293226 1.0000 120 chr2L:7419990-7420110 1.0000 120 chr2R:6236110-6236230 1.0000 120 chr2R:10110809-10110929 1.0000 120 chr3R:29229337-29229457 1.0000 120 chr3R:27905870-27905990 1.0000 120 chrX:19718739-19718859 1.0000 120 chr3R:18667794-18667914 1.0000 120 chr3L:9430503-9430623 1.0000 120 chrX:6698388-6698508 1.0000 120 chr2L:7782822-7782942 1.0000 120 chr2L:3772864-3772984 1.0000 120 chrX:13211633-13211753 1.0000 120 chrX:531118-531238 1.0000 120 chr2L:221278-221398 1.0000 120 chrX:9686744-9686864 1.0000 120 chr2R:5782725-5782845 1.0000 120 chr2R:6648039-6648159 1.0000 120 chr3R:6660080-6660200 1.0000 120 chr3R:5660585-5660705 1.0000 120 chr2L:6089183-6089303 1.0000 120 chr2L:2677666-2677786 1.0000 120 chr3L:21026241-21026361 1.0000 120 chr3L:21023436-21023556 1.0000 120 chrX:18812242-18812362 1.0000 120 chrX:9684310-9684430 1.0000 120 chr3R:16284963-16285083 1.0000 120 chr3R:5563596-5563716 1.0000 120 chr2L:18485383-18485503 1.0000 120 chr3R:19903266-19903386 1.0000 120 chr3L:1891108-1891228 1.0000 120 chr2R:14427105-14427225 1.0000 120 chr3R:17606092-17606212 1.0000 120 chr3R:29229135-29229255 1.0000 120 chr2R:16636252-16636372 1.0000 120 chr3L:11708507-11708627 1.0000 120 chrX:6862557-6862677 1.0000 120 chr3L:11765092-11765212 1.0000 120 chr3R:17718856-17718976 1.0000 120 chr3R:26261517-26261637 1.0000 120 chr2R:14174736-14174856 1.0000 120 chr3L:21009010-21009130 1.0000 120 chr2L:15248440-15248560 1.0000 120 chr2R:16638145-16638265 1.0000 120 chr2R:10444069-10444189 1.0000 120 chr2R:6632422-6632542 1.0000 120 chr3R:12997963-12998083 1.0000 120 chr3L:11708707-11708827 1.0000 120 chr2L:1118983-1119103 1.0000 120 chr3R:20897262-20897382 1.0000 120 chrX:5899391-5899511 1.0000 120 chr2L:10298484-10298604 1.0000 120 chr3R:6534200-6534320 1.0000 120 chr3L:21014734-21014854 1.0000 120 chr2R:8122927-8123047 1.0000 120 chr2L:922751-922871 1.0000 120 chrX:18812992-18813112 1.0000 120 chr3R:30912546-30912666 1.0000 120 chr3R:14818003-14818123 1.0000 120 chrX:11713798-11713918 1.0000 120 chr2R:23925148-23925268 1.0000 120 chr3R:19643071-19643191 1.0000 120 chr3R:4821161-4821281 1.0000 120 chr3L:6189075-6189195 1.0000 120 chr3R:24234066-24234186 1.0000 120 chrX:9931007-9931127 1.0000 120 chr3L:20221068-20221188 1.0000 120 chr3R:21446537-21446657 1.0000 120 chrX:9684854-9684974 1.0000 120 chr3R:25982857-25982977 1.0000 120 chr2L:18948859-18948979 1.0000 120 chrX:3780079-3780199 1.0000 120 chr3R:17718527-17718647 1.0000 120 chr2R:10429926-10430046 1.0000 120 chr2R:22136919-22137039 1.0000 120 chrX:16683928-16684048 1.0000 120 chr3R:21347809-21347929 1.0000 120 chr2R:7989126-7989246 1.0000 120 chr2L:12436551-12436671 1.0000 120 chr2L:5325028-5325148 1.0000 120 chrX:11154045-11154165 1.0000 120 chr3R:29857478-29857598 1.0000 120 chrX:3775970-3776090 1.0000 120 chr2R:14008432-14008552 1.0000 120 chr2L:248238-248358 1.0000 120 chr2R:14275437-14275557 1.0000 120 chr3R:29064777-29064897 1.0000 120 chr3L:8359047-8359167 1.0000 120 chr3R:10356356-10356476 1.0000 120 chr3L:9854772-9854892 1.0000 120 chrX:6590727-6590847 1.0000 120 chr2L:5278467-5278587 1.0000 120 chr3L:6218547-6218667 1.0000 120 chrX:3745401-3745521 1.0000 120 chr3R:23943179-23943299 1.0000 120 chr2L:6082480-6082600 1.0000 120 chr2R:22998858-22998978 1.0000 120 chr2L:21828030-21828150 1.0000 120 chrX:18282492-18282612 1.0000 120 chr2R:23942347-23942467 1.0000 120 chr3R:18399082-18399202 1.0000 120 chrX:9685056-9685176 1.0000 120 chrX:3719787-3719907 1.0000 120 chrX:8650571-8650691 1.0000 120 chr3L:9509525-9509645 1.0000 120 chr2L:6481430-6481550 1.0000 120 chrX:10621567-10621687 1.0000 120 chr3R:21587204-21587324 1.0000 120 chr3L:9134443-9134563 1.0000 120 chr3L:19897489-19897609 1.0000 120 chr3R:12998165-12998285 1.0000 120 chr3R:31221765-31221885 1.0000 120 chr2L:8675716-8675836 1.0000 120 chrX:16149123-16149243 1.0000 120 chr3L:19897290-19897410 1.0000 120 chr3R:31748355-31748475 1.0000 120 chr2L:18944266-18944386 1.0000 120 chr2L:1346158-1346278 1.0000 120 chrX:1286273-1286393 1.0000 120 chr2R:19457079-19457199 1.0000 120 chrX:19638389-19638509 1.0000 120 chrX:1287218-1287338 1.0000 120 chr2L:21251052-21251172 1.0000 120 chr3L:15161709-15161829 1.0000 120 chrX:7097465-7097585 1.0000 120 chr2R:19164135-19164255 1.0000 120 chrX:4172271-4172391 1.0000 120 chr2L:6494457-6494577 1.0000 120 chr3R:16850755-16850875 1.0000 120 chrX:7912088-7912208 1.0000 120 chr2R:11890460-11890580 1.0000 120 chr2R:22689027-22689147 1.0000 120 chr3R:27281431-27281551 1.0000 120 chr3R:24234267-24234387 1.0000 120 chrX:5082682-5082802 1.0000 120 chrX:11716652-11716772 1.0000 120 chr3R:15290892-15291012 1.0000 120 chr2R:23964749-23964869 1.0000 120 chr3L:331973-332093 1.0000 120 chrX:3740861-3740981 1.0000 120 chr3L:7360179-7360299 1.0000 120 chr3L:6609343-6609463 1.0000 120 chr3L:7369813-7369933 1.0000 120 chr2L:5981003-5981123 1.0000 120 chr2L:8030471-8030591 1.0000 120 chr3R:11773493-11773613 1.0000 120 chrX:11154253-11154373 1.0000 120 chr2R:9578008-9578128 1.0000 120 chrX:19697221-19697341 1.0000 120 chr2L:1158116-1158236 1.0000 120 chr3L:6125263-6125383 1.0000 120 chrX:19268811-19268931 1.0000 120 chr2R:13190069-13190189 1.0000 120 chr2R:7489890-7490010 1.0000 120 chr2L:10736080-10736200 1.0000 120 chrX:3779367-3779487 1.0000 120 chr2L:6644454-6644574 1.0000 120 chr3R:4821383-4821503 1.0000 120 chr3R:15330637-15330757 1.0000 120 chr3R:31812543-31812663 1.0000 120 chr2L:6079060-6079180 1.0000 120 chr3R:22580609-22580729 1.0000 120 chrX:19631677-19631797 1.0000 120 chrX:1922902-1923022 1.0000 120 chr3R:22425011-22425131 1.0000 120 chr2L:73297-73417 1.0000 120 chr2R:18158105-18158225 1.0000 120 chr3R:24771333-24771453 1.0000 120 chrX:7109990-7110110 1.0000 120 chrX:3872246-3872366 1.0000 120 chr3L:16046778-16046898 1.0000 120 chr2L:246817-246937 1.0000 120 chr3L:16602898-16603018 1.0000 120 chr2R:10124385-10124505 1.0000 120 chrX:15076195-15076315 1.0000 120 chrX:16147644-16147764 1.0000 120 chr2R:17590773-17590893 1.0000 120 chr3R:22526633-22526753 1.0000 120 chr3R:6382839-6382959 1.0000 120 chr3R:9038788-9038908 1.0000 120 chrX:5745187-5745307 1.0000 120 chr2R:23744767-23744887 1.0000 120 chr2L:15745617-15745737 1.0000 120 chr3L:22835428-22835548 1.0000 120 chrX:19498111-19498231 1.0000 120 chr2R:6242157-6242277 1.0000 120 chr3R:15985926-15986046 1.0000 120 chr2L:6339277-6339397 1.0000 120 chr3L:16146683-16146803 1.0000 120 chr3L:17573962-17574082 1.0000 120 chr2L:222269-222389 1.0000 120 chr2L:12172805-12172925 1.0000 120 chr3R:29869215-29869335 1.0000 120 chr2R:21183231-21183351 1.0000 120 chr2R:6605728-6605848 1.0000 120 chr3R:4811983-4812103 1.0000 120 chr3R:30209335-30209455 1.0000 120 chr2L:9494684-9494804 1.0000 120 chrX:11709939-11710059 1.0000 120 chr3R:21156051-21156171 1.0000 120 chrX:3109058-3109178 1.0000 120 chrX:19243525-19243645 1.0000 120 chr3L:21034451-21034571 1.0000 120 chr3L:21026442-21026562 1.0000 120 chrX:12654308-12654428 1.0000 120 chr2R:15371490-15371610 1.0000 120 chr3R:21111312-21111432 1.0000 120 chrX:21324032-21324152 1.0000 120 chr2L:9330658-9330778 1.0000 120 chr3R:11735479-11735599 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG12155/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12155.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.27 C 0.234 G 0.238 T 0.259 Background letter frequencies (from file dataset with add-one prior applied): A 0.27 C 0.234 G 0.238 T 0.259 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YAGCGAGW MEME-1 width = 8 sites = 112 llr = 909 E-value = 7.7e-071 ******************************************************************************** -------------------------------------------------------------------------------- Motif YAGCGAGW MEME-1 Description -------------------------------------------------------------------------------- Simplified A :83::a:4 pos.-specific C 5::a:::: probability G 227:a:a: matrix T 3::::::6 bits 2.1 ** * 1.9 **** 1.7 **** 1.5 **** Relative 1.3 ****** Entropy 1.0 ****** (11.7 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCGAGT consensus T A A sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAGCGAGW MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6605728-6605848 23 1.39e-05 GTAAAAAGCG CAGCGAGT GCAAGCCAAA chr3R:9038788-9038908 92 1.39e-05 AACGCGAAAC CAGCGAGT GTCATCGCTA chrX:19268811-19268931 4 1.39e-05 ACA CAGCGAGT ATTTTCCTTT chrX:7097465-7097585 6 1.39e-05 AAAAA CAGCGAGT ATCTGTATAC chr2L:1346158-1346278 80 1.39e-05 ACGCTTGGGG CAGCGAGT AGATAGATGG chr2R:7989126-7989246 103 1.39e-05 TCAAGGTCAG CAGCGAGT GCGCGAGCGA chr3L:6189075-6189195 65 1.39e-05 GTACTTCTGC CAGCGAGT TACTCGTCCG chr3R:14818003-14818123 96 1.39e-05 AGAGTGAATC CAGCGAGT AGTCACTGTT chr3R:17718856-17718976 81 1.39e-05 TATGCAACTA CAGCGAGT TTAAACATCG chr3L:11765092-11765212 53 1.39e-05 CTCACAGAGA CAGCGAGT GAAAGAGACA chr2R:16636252-16636372 89 1.39e-05 CGGAGATGTG CAGCGAGT GCAGAAAACG chrX:9686744-9686864 80 1.39e-05 CGAGACGGGT CAGCGAGT GATACCGATT chrX:531118-531238 66 1.39e-05 CCCCGAGAAC CAGCGAGT GGGTATGACA chr2L:3772864-3772984 10 1.39e-05 CCAAAAAGG CAGCGAGT ACAAAAATAT chr3L:9430503-9430623 69 1.39e-05 aCTACTTCCA CAGCGAGT GGAAGACTAC chr3R:29229337-29229457 46 1.39e-05 GCTGTTAACA CAGCGAGT AGCGTgtgca chr3R:30909189-30909309 85 1.39e-05 AGTGAATAAT CAGCGAGT CTCCGACGAG chr2R:15890930-15891050 53 1.39e-05 gagtaccgag cagcgagt agcaagcagc chr2L:9460175-9460295 79 1.39e-05 GCAGCGAAAC CAGCGAGT GCGAGCGAGA chr2L:9493988-9494108 29 1.39e-05 AGAGCTTTGC CAGCGAGT GAAAAGGCAG chr2L:19054309-19054429 56 1.39e-05 TTTTGCGAAG CAGCGAGT GCCTGGCCAA chr3L:3964084-3964204 39 1.39e-05 AATTGCAAAG CAGCGAGT ACATGCAACA chr2R:6242157-6242277 68 2.85e-05 ATCGCGCTTC CAGCGAGA AATCTCTGCT chr2L:6494457-6494577 89 2.85e-05 CTTAAATCTA CAGCGAGA gcttttggct chr2L:8675716-8675836 9 2.85e-05 TACGCCAG CAGCGAGA GCTCGAAGAG chrX:18282492-18282612 49 2.85e-05 CCCGAAACTC CAGCGAGA GCgagcggga chr3L:6218547-6218667 76 2.85e-05 GATTAAACTG CAGCGAGA AGTTTTCCCG chrX:3775970-3776090 29 2.85e-05 cgcagagcag cagcgaga ggagcaccgc chr2L:5325028-5325148 22 2.85e-05 GATATCTATG CAGCGAGA GTTTGCAGCC chrX:9931007-9931127 70 2.85e-05 aaagcgaacg cagcgaGA ATAAAACTCG chr2L:7782822-7782942 23 2.85e-05 TGGCTAATAT CAGCGAGA CGTCTTACAA chr3L:1637740-1637860 79 2.85e-05 AATGGTGTTC CAGCGAGA AGCTTTTCCT chrX:18806523-18806643 86 2.85e-05 acgagagTGC CAGCGAGA GCGCGAAAGA chr2L:9330658-9330778 33 5.81e-05 CATCACTATA TAGCGAGT GCACCAACCC chr2L:6339277-6339397 69 5.81e-05 AGAGCCCTGC GAGCGAGT TTAAAGTTCA chrX:15076195-15076315 52 5.81e-05 TTTATTATAT GAGCGAGT GCCGCCGCCA chr3R:11773493-11773613 77 5.81e-05 GGAGCCGGAG TAGCGAGT CAAAGTCGGT chr3L:7369813-7369933 111 5.81e-05 AAATTATATC TAGCGAGT CG chr2R:22689027-22689147 73 5.81e-05 CCGCTCTCTC GAGCGAGT AGAGAGTAGC chr2L:6481430-6481550 110 5.81e-05 GCGTGGAAAT GAGCGAGT GAG chrX:3719787-3719907 28 5.81e-05 ATAGGCGAGC GAGCGAGT TGTGCACTCG chr2L:5278467-5278587 17 5.81e-05 GCGTAATTTC TAGCGAGT TGATAAAAAA chrX:6590727-6590847 15 5.81e-05 ATATTTTGAA TAGCGAGT GCGCTAACTC chr3R:21347809-21347929 31 5.81e-05 ATGAATAAGC GAGCGAGT GGAGAGCAAC chr2R:6632422-6632542 14 5.81e-05 TGGCAAGTCG GAGCGAGT GGCCAACAAC chr3L:21009010-21009130 33 5.81e-05 CTGTGCAAAG TAGCGAGT AAGAGAGAGA chr3L:19896416-19896536 91 5.81e-05 AGAACGGAAG TAGCGAGT GGCAGATCAC chr3L:5360135-5360255 51 5.81e-05 GCTGGCAAAC GAGCGAGT TGCCCACCAC chr3L:14992104-14992224 46 5.81e-05 GTTAAGTTTG TAGCGAGT GCGCAGAGCG chr2R:13189342-13189462 76 5.81e-05 ATGGTGGGAA GAGCGAGT GAGCGGGCAG chr3R:22526633-22526753 37 7.39e-05 GGCTGCCTAG CAACGAGT TGGAGTGGCG chr2R:19164135-19164255 30 7.39e-05 CTTTGACATT CAACGAGT AAGGTTGGTG chrX:9685056-9685176 90 7.39e-05 CGGTAAACGG CAACGAGT GCGAGGAGCA chr2L:922751-922871 17 7.39e-05 GCGTATATAA CAACGAGT GCGCCAACTG chrX:18812242-18812362 107 7.39e-05 GGAAATGAAA CAACGAGT GAGATT chr3R:29723291-29723411 53 7.39e-05 GCAACAACAG CAACGAGT AGAAGGTATT chrX:7097260-7097380 5 7.39e-05 GTAA CAACGAGT GGACGGgaga chr3L:21026442-21026562 85 1.05e-04 CAACCATTTT GAGCGAGA GGCAGACAGA chr2L:15745617-15745737 108 1.05e-04 AAACGGAAGA GAGCGAGA GAAAG chr2L:18944266-18944386 18 1.05e-04 CACCGCGGGC GAGCGAGA CAACCCGAGC chr3R:31221765-31221885 76 1.05e-04 GTGCGGGTGC GAGCGAGA GCGCAGCACA chr3L:9134443-9134563 5 1.05e-04 GCGT GAGCGAGA CGGGTAAAGT chr3R:18399082-18399202 3 1.05e-04 CC GAGCGAGA GTATCTTTAT chr2R:22136919-22137039 3 1.05e-04 GC GAGCGAGA GAGGCAAACT chr3R:26261517-26261637 17 1.05e-04 GAGACATGCC GAGCGAGA CCCCAAAAGG chr2L:221278-221398 30 1.05e-04 ACCGAATTAC GAGCGAGA GGGCCAAATG chr2R:6236110-6236230 81 1.05e-04 gaacgattga gagcgaga ACCCATTGTT chr2L:7419990-7420110 93 1.05e-04 GTGCGAGCAA GAGCGAGA GCTCGACTCT chr3R:30209335-30209455 63 1.17e-04 CATGCTTCAG CGGCGAGT ATCACCACTT chrX:9684854-9684974 10 1.17e-04 TTGTTGGGG CGGCGAGT GGCGAGTGGG chr3L:21026241-21026361 63 1.17e-04 GTTGTACCAG CGGCGAGT GGCGAGAGAG chr3L:16046778-16046898 67 1.34e-04 TGAAACGAAG CAACGAGA CGAGCGCTGC chrX:9684310-9684430 49 1.34e-04 AAGGGAAGAA CAACGAGA ACAGTACCGA chr3R:32015478-32015598 54 1.34e-04 AGCCAGCTCA CAACGAGA GAGTTCCCAC chr2R:19457079-19457199 90 1.67e-04 TGCTTTGTAA TAACGAGT ACACTTTTCT chr3R:21587204-21587324 20 1.67e-04 AATCTACTAG TAACGAGT AACGAGAACT chr3L:9509525-9509645 91 1.67e-04 GCTCGGGAAA TAACGAGT ACTAAGTTGA chr2L:248238-248358 29 1.67e-04 ATTCGCATAT TAACGAGT GGGGGAGGGA chr2L:18485383-18485503 73 1.67e-04 TTCCAGTCAG TAACGAGT TGAATGTGGC chr3L:8060489-8060609 53 1.67e-04 ACTGTTAAAC TAACGAGT GCCAATTTCC chr3L:16182951-16183071 25 1.67e-04 CTTGAAAAAC GAACGAGT CCAGTCGGAC chrX:1287019-1287139 17 1.67e-04 AAGCTCCAAC TAACGAGT AGAATGCGAA chrX:11713798-11713918 33 1.80e-04 TGAGAGTTCC CGGCgaga aagaagcgag chr2R:7889453-7889573 28 1.80e-04 TGCGGTTAAG CGGCGAGA CGTTGCGCCA chr2R:22998858-22998978 86 2.06e-04 gcgatgacga tggcgagt ggAGCCGAGC chr2R:23925148-23925268 110 2.06e-04 ATTTCAACCG TGGCGAGT TGT chrX:6698388-6698508 77 2.06e-04 AAAAAAAATG TGGCGAGT AAACAACAAA chr3R:29457326-29457446 73 2.06e-04 GATCAAAAAG TGGCGAGT TCGAGGTGCA chr2L:8030271-8030391 59 2.06e-04 TTTCGATTGT TGGCGAGT AGGAGTCTCT chr3L:22835428-22835548 49 2.41e-04 GAGACGACGA GAACGAGA ACTGCGCCCC chr3L:7360179-7360299 85 2.41e-04 ACCCAAAATG TAACGAGA CGATGAGCTC chr3L:8359047-8359167 4 2.41e-04 ATG TAACGAGA GTATAAAAAA chr2R:14427105-14427225 66 2.41e-04 CCCAATTTAG TAACGAGA AAAAGTGCAT chrX:13211633-13211753 27 2.41e-04 CTATCGCAAC TAACGAGA TGCCAACTAG chr3L:8065687-8065807 47 2.41e-04 ACTATGAAAG TAACGAGA ACCCGAAAAT chr3L:20221068-20221188 24 2.57e-04 TTTCGCCTAA AAGCGAGT TTTGTCCGTT chr3L:8576041-8576161 71 2.57e-04 GTGGCCAAAC AAGCGAGT TGGAATCAGA chr3L:21034451-21034571 107 2.71e-04 AAACGTCGAA CGACGAGT GCGTCG chr3L:17573962-17574082 16 2.84e-04 GCAGCGAATG CAGCGAGC GGAGAGCCAG chr2R:6648039-6648159 24 2.84e-04 AACCGGTTCC CAGCGAGC CGCGGCTCGC chr3R:23943179-23943299 87 3.11e-04 TTCGTTGCCA GGGCGAGA TTAGGTATTT chr2L:1118983-1119103 87 3.11e-04 CCGATCCGAC TGgcgaga gcggagagcc chr2R:10124385-10124505 91 3.28e-04 AGCGCGTAAC AAGCGAGA CCCCGAAATC chr2L:21828030-21828150 62 3.28e-04 GAAACAAAAG AAGCGAGA TCCACGAAGA chrX:5082682-5082802 21 3.42e-04 CAACAACGAA CGACGAGA CAATTAGCGG chr2L:222269-222389 71 3.72e-04 TGCAGTGGAT GGACGAGT TGAAGAAGAG chr3R:5563596-5563716 38 3.72e-04 ATCAAACAGC TGACGAGT AGAATTCGCG chr3R:27905870-27905990 58 3.98e-04 ACAGTTAGCC GAGCGAGC ACGACAGGAT chrX:19697221-19697341 30 4.31e-04 AAGGTGCCCG CAACGAGC ATCCGCCGTA chr2L:1158116-1158236 18 4.62e-04 CAATTAGAAC TGACGAGA AGCTGCGTAG chr3R:31748355-31748475 85 4.62e-04 gaagaggaga tgacgaga gaagcagGGC chrX:1286273-1286393 5 4.95e-04 AGTT AAACGAGA TATTGCGGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAGCGAGW MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6605728-6605848 1.4e-05 22_[+1]_90 chr3R:9038788-9038908 1.4e-05 91_[+1]_21 chrX:19268811-19268931 1.4e-05 3_[+1]_109 chrX:7097465-7097585 1.4e-05 5_[+1]_107 chr2L:1346158-1346278 1.4e-05 79_[+1]_33 chr2R:7989126-7989246 1.4e-05 102_[+1]_10 chr3L:6189075-6189195 1.4e-05 64_[+1]_48 chr3R:14818003-14818123 1.4e-05 95_[+1]_17 chr3R:17718856-17718976 1.4e-05 80_[+1]_32 chr3L:11765092-11765212 1.4e-05 52_[+1]_60 chr2R:16636252-16636372 1.4e-05 88_[+1]_24 chrX:9686744-9686864 1.4e-05 79_[+1]_33 chrX:531118-531238 1.4e-05 65_[+1]_47 chr2L:3772864-3772984 1.4e-05 9_[+1]_103 chr3L:9430503-9430623 1.4e-05 68_[+1]_44 chr3R:29229337-29229457 1.4e-05 45_[+1]_67 chr3R:30909189-30909309 1.4e-05 84_[+1]_28 chr2R:15890930-15891050 1.4e-05 52_[+1]_60 chr2L:9460175-9460295 1.4e-05 78_[+1]_34 chr2L:9493988-9494108 1.4e-05 28_[+1]_84 chr2L:19054309-19054429 1.4e-05 55_[+1]_57 chr3L:3964084-3964204 1.4e-05 38_[+1]_74 chr2R:6242157-6242277 2.8e-05 67_[+1]_45 chr2L:6494457-6494577 2.8e-05 88_[+1]_24 chr2L:8675716-8675836 2.8e-05 8_[+1]_104 chrX:18282492-18282612 2.8e-05 48_[+1]_64 chr3L:6218547-6218667 2.8e-05 75_[+1]_37 chrX:3775970-3776090 2.8e-05 28_[+1]_84 chr2L:5325028-5325148 2.8e-05 21_[+1]_91 chrX:9931007-9931127 2.8e-05 69_[+1]_43 chr2L:7782822-7782942 2.8e-05 22_[+1]_90 chr3L:1637740-1637860 2.8e-05 78_[+1]_34 chrX:18806523-18806643 2.8e-05 85_[+1]_27 chr2L:9330658-9330778 5.8e-05 32_[+1]_80 chr2L:6339277-6339397 5.8e-05 68_[+1]_44 chrX:15076195-15076315 5.8e-05 51_[+1]_61 chr3R:11773493-11773613 5.8e-05 76_[+1]_36 chr3L:7369813-7369933 5.8e-05 110_[+1]_2 chr2R:22689027-22689147 5.8e-05 72_[+1]_40 chr2L:6481430-6481550 5.8e-05 109_[+1]_3 chrX:3719787-3719907 5.8e-05 27_[+1]_85 chr2L:5278467-5278587 5.8e-05 16_[+1]_96 chrX:6590727-6590847 5.8e-05 14_[+1]_98 chr3R:21347809-21347929 5.8e-05 30_[+1]_82 chr2R:6632422-6632542 5.8e-05 13_[+1]_99 chr3L:21009010-21009130 5.8e-05 32_[+1]_80 chr3L:19896416-19896536 5.8e-05 90_[+1]_22 chr3L:5360135-5360255 5.8e-05 50_[+1]_62 chr3L:14992104-14992224 5.8e-05 45_[+1]_67 chr2R:13189342-13189462 5.8e-05 75_[+1]_37 chr3R:22526633-22526753 7.4e-05 36_[+1]_76 chr2R:19164135-19164255 7.4e-05 29_[+1]_83 chrX:9685056-9685176 7.4e-05 89_[+1]_23 chr2L:922751-922871 7.4e-05 16_[+1]_96 chrX:18812242-18812362 7.4e-05 106_[+1]_6 chr3R:29723291-29723411 7.4e-05 52_[+1]_60 chrX:7097260-7097380 7.4e-05 4_[+1]_108 chr3L:21026442-21026562 0.0001 84_[+1]_28 chr2L:15745617-15745737 0.0001 107_[+1]_5 chr2L:18944266-18944386 0.0001 17_[+1]_95 chr3R:31221765-31221885 0.0001 75_[+1]_37 chr3L:9134443-9134563 0.0001 4_[+1]_108 chr3R:18399082-18399202 0.0001 2_[+1]_110 chr2R:22136919-22137039 0.0001 2_[+1]_110 chr3R:26261517-26261637 0.0001 16_[+1]_96 chr2L:221278-221398 0.0001 29_[+1]_83 chr2R:6236110-6236230 0.0001 80_[+1]_32 chr2L:7419990-7420110 0.0001 92_[+1]_20 chr3R:30209335-30209455 0.00012 62_[+1]_50 chrX:9684854-9684974 0.00012 9_[+1]_103 chr3L:21026241-21026361 0.00012 62_[+1]_50 chr3L:16046778-16046898 0.00013 66_[+1]_46 chrX:9684310-9684430 0.00013 48_[+1]_64 chr3R:32015478-32015598 0.00013 53_[+1]_59 chr2R:19457079-19457199 0.00017 89_[+1]_23 chr3R:21587204-21587324 0.00017 19_[+1]_93 chr3L:9509525-9509645 0.00017 90_[+1]_22 chr2L:248238-248358 0.00017 28_[+1]_84 chr2L:18485383-18485503 0.00017 72_[+1]_40 chr3L:8060489-8060609 0.00017 52_[+1]_60 chr3L:16182951-16183071 0.00017 24_[+1]_88 chrX:1287019-1287139 0.00017 16_[+1]_96 chrX:11713798-11713918 0.00018 32_[+1]_80 chr2R:7889453-7889573 0.00018 27_[+1]_85 chr2R:22998858-22998978 0.00021 85_[+1]_27 chr2R:23925148-23925268 0.00021 109_[+1]_3 chrX:6698388-6698508 0.00021 76_[+1]_36 chr3R:29457326-29457446 0.00021 72_[+1]_40 chr2L:8030271-8030391 0.00021 58_[+1]_54 chr3L:22835428-22835548 0.00024 48_[+1]_64 chr3L:7360179-7360299 0.00024 84_[+1]_28 chr3L:8359047-8359167 0.00024 3_[+1]_109 chr2R:14427105-14427225 0.00024 65_[+1]_47 chrX:13211633-13211753 0.00024 26_[+1]_86 chr3L:8065687-8065807 0.00024 46_[+1]_66 chr3L:20221068-20221188 0.00026 23_[+1]_89 chr3L:8576041-8576161 0.00026 70_[+1]_42 chr3L:21034451-21034571 0.00027 106_[+1]_6 chr3L:17573962-17574082 0.00028 15_[+1]_97 chr2R:6648039-6648159 0.00028 23_[+1]_89 chr3R:23943179-23943299 0.00031 86_[+1]_26 chr2L:1118983-1119103 0.00031 86_[+1]_26 chr2R:10124385-10124505 0.00033 90_[+1]_22 chr2L:21828030-21828150 0.00033 61_[+1]_51 chrX:5082682-5082802 0.00034 20_[+1]_92 chr2L:222269-222389 0.00037 70_[+1]_42 chr3R:5563596-5563716 0.00037 37_[+1]_75 chr3R:27905870-27905990 0.0004 57_[+1]_55 chrX:19697221-19697341 0.00043 29_[+1]_83 chr2L:1158116-1158236 0.00046 17_[+1]_95 chr3R:31748355-31748475 0.00046 84_[+1]_28 chrX:1286273-1286393 0.0005 4_[+1]_108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAGCGAGW MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YAGCGAGW width=8 seqs=112 chr2R:6605728-6605848 ( 23) CAGCGAGT 1 chr3R:9038788-9038908 ( 92) CAGCGAGT 1 chrX:19268811-19268931 ( 4) CAGCGAGT 1 chrX:7097465-7097585 ( 6) CAGCGAGT 1 chr2L:1346158-1346278 ( 80) CAGCGAGT 1 chr2R:7989126-7989246 ( 103) CAGCGAGT 1 chr3L:6189075-6189195 ( 65) CAGCGAGT 1 chr3R:14818003-14818123 ( 96) CAGCGAGT 1 chr3R:17718856-17718976 ( 81) CAGCGAGT 1 chr3L:11765092-11765212 ( 53) CAGCGAGT 1 chr2R:16636252-16636372 ( 89) CAGCGAGT 1 chrX:9686744-9686864 ( 80) CAGCGAGT 1 chrX:531118-531238 ( 66) CAGCGAGT 1 chr2L:3772864-3772984 ( 10) CAGCGAGT 1 chr3L:9430503-9430623 ( 69) CAGCGAGT 1 chr3R:29229337-29229457 ( 46) CAGCGAGT 1 chr3R:30909189-30909309 ( 85) CAGCGAGT 1 chr2R:15890930-15891050 ( 53) CAGCGAGT 1 chr2L:9460175-9460295 ( 79) CAGCGAGT 1 chr2L:9493988-9494108 ( 29) CAGCGAGT 1 chr2L:19054309-19054429 ( 56) CAGCGAGT 1 chr3L:3964084-3964204 ( 39) CAGCGAGT 1 chr2R:6242157-6242277 ( 68) CAGCGAGA 1 chr2L:6494457-6494577 ( 89) CAGCGAGA 1 chr2L:8675716-8675836 ( 9) CAGCGAGA 1 chrX:18282492-18282612 ( 49) CAGCGAGA 1 chr3L:6218547-6218667 ( 76) CAGCGAGA 1 chrX:3775970-3776090 ( 29) CAGCGAGA 1 chr2L:5325028-5325148 ( 22) CAGCGAGA 1 chrX:9931007-9931127 ( 70) CAGCGAGA 1 chr2L:7782822-7782942 ( 23) CAGCGAGA 1 chr3L:1637740-1637860 ( 79) CAGCGAGA 1 chrX:18806523-18806643 ( 86) CAGCGAGA 1 chr2L:9330658-9330778 ( 33) TAGCGAGT 1 chr2L:6339277-6339397 ( 69) GAGCGAGT 1 chrX:15076195-15076315 ( 52) GAGCGAGT 1 chr3R:11773493-11773613 ( 77) TAGCGAGT 1 chr3L:7369813-7369933 ( 111) TAGCGAGT 1 chr2R:22689027-22689147 ( 73) GAGCGAGT 1 chr2L:6481430-6481550 ( 110) GAGCGAGT 1 chrX:3719787-3719907 ( 28) GAGCGAGT 1 chr2L:5278467-5278587 ( 17) TAGCGAGT 1 chrX:6590727-6590847 ( 15) TAGCGAGT 1 chr3R:21347809-21347929 ( 31) GAGCGAGT 1 chr2R:6632422-6632542 ( 14) GAGCGAGT 1 chr3L:21009010-21009130 ( 33) TAGCGAGT 1 chr3L:19896416-19896536 ( 91) TAGCGAGT 1 chr3L:5360135-5360255 ( 51) GAGCGAGT 1 chr3L:14992104-14992224 ( 46) TAGCGAGT 1 chr2R:13189342-13189462 ( 76) GAGCGAGT 1 chr3R:22526633-22526753 ( 37) CAACGAGT 1 chr2R:19164135-19164255 ( 30) CAACGAGT 1 chrX:9685056-9685176 ( 90) CAACGAGT 1 chr2L:922751-922871 ( 17) CAACGAGT 1 chrX:18812242-18812362 ( 107) CAACGAGT 1 chr3R:29723291-29723411 ( 53) CAACGAGT 1 chrX:7097260-7097380 ( 5) CAACGAGT 1 chr3L:21026442-21026562 ( 85) GAGCGAGA 1 chr2L:15745617-15745737 ( 108) GAGCGAGA 1 chr2L:18944266-18944386 ( 18) GAGCGAGA 1 chr3R:31221765-31221885 ( 76) GAGCGAGA 1 chr3L:9134443-9134563 ( 5) GAGCGAGA 1 chr3R:18399082-18399202 ( 3) GAGCGAGA 1 chr2R:22136919-22137039 ( 3) GAGCGAGA 1 chr3R:26261517-26261637 ( 17) GAGCGAGA 1 chr2L:221278-221398 ( 30) GAGCGAGA 1 chr2R:6236110-6236230 ( 81) GAGCGAGA 1 chr2L:7419990-7420110 ( 93) GAGCGAGA 1 chr3R:30209335-30209455 ( 63) CGGCGAGT 1 chrX:9684854-9684974 ( 10) CGGCGAGT 1 chr3L:21026241-21026361 ( 63) CGGCGAGT 1 chr3L:16046778-16046898 ( 67) CAACGAGA 1 chrX:9684310-9684430 ( 49) CAACGAGA 1 chr3R:32015478-32015598 ( 54) CAACGAGA 1 chr2R:19457079-19457199 ( 90) TAACGAGT 1 chr3R:21587204-21587324 ( 20) TAACGAGT 1 chr3L:9509525-9509645 ( 91) TAACGAGT 1 chr2L:248238-248358 ( 29) TAACGAGT 1 chr2L:18485383-18485503 ( 73) TAACGAGT 1 chr3L:8060489-8060609 ( 53) TAACGAGT 1 chr3L:16182951-16183071 ( 25) GAACGAGT 1 chrX:1287019-1287139 ( 17) TAACGAGT 1 chrX:11713798-11713918 ( 33) CGGCGAGA 1 chr2R:7889453-7889573 ( 28) CGGCGAGA 1 chr2R:22998858-22998978 ( 86) TGGCGAGT 1 chr2R:23925148-23925268 ( 110) TGGCGAGT 1 chrX:6698388-6698508 ( 77) TGGCGAGT 1 chr3R:29457326-29457446 ( 73) TGGCGAGT 1 chr2L:8030271-8030391 ( 59) TGGCGAGT 1 chr3L:22835428-22835548 ( 49) GAACGAGA 1 chr3L:7360179-7360299 ( 85) TAACGAGA 1 chr3L:8359047-8359167 ( 4) TAACGAGA 1 chr2R:14427105-14427225 ( 66) TAACGAGA 1 chrX:13211633-13211753 ( 27) TAACGAGA 1 chr3L:8065687-8065807 ( 47) TAACGAGA 1 chr3L:20221068-20221188 ( 24) AAGCGAGT 1 chr3L:8576041-8576161 ( 71) AAGCGAGT 1 chr3L:21034451-21034571 ( 107) CGACGAGT 1 chr3L:17573962-17574082 ( 16) CAGCGAGC 1 chr2R:6648039-6648159 ( 24) CAGCGAGC 1 chr3R:23943179-23943299 ( 87) GGGCGAGA 1 chr2L:1118983-1119103 ( 87) TGGCGAGA 1 chr2R:10124385-10124505 ( 91) AAGCGAGA 1 chr2L:21828030-21828150 ( 62) AAGCGAGA 1 chrX:5082682-5082802 ( 21) CGACGAGA 1 chr2L:222269-222389 ( 71) GGACGAGT 1 chr3R:5563596-5563716 ( 38) TGACGAGT 1 chr3R:27905870-27905990 ( 58) GAGCGAGC 1 chrX:19697221-19697341 ( 30) CAACGAGC 1 chr2L:1158116-1158236 ( 18) TGACGAGA 1 chr3R:31748355-31748475 ( 85) TGACGAGA 1 chrX:1286273-1286393 ( 5) AAACGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAGCGAGW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.19855 E= 7.7e-071 -259 102 -9 0 164 -1345 -57 -1345 8 -1345 159 -1345 -1345 210 -1345 -1345 -1345 -1345 207 -1345 189 -1345 -1345 -1345 -1345 -1345 207 -1345 44 -271 -1345 121 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAGCGAGW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 112 E= 7.7e-071 0.044643 0.473214 0.223214 0.258929 0.839286 0.000000 0.160714 0.000000 0.285714 0.000000 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.366071 0.035714 0.000000 0.598214 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YAGCGAGW MEME-1 regular expression -------------------------------------------------------------------------------- [CTG]A[GA]CGAG[TA] -------------------------------------------------------------------------------- Time 7.91 secs. ******************************************************************************** ******************************************************************************** MOTIF ACTCGCTS MEME-2 width = 8 sites = 94 llr = 798 E-value = 1.0e-062 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACTCGCTS MEME-2 Description -------------------------------------------------------------------------------- Simplified A 8::::::2 pos.-specific C :a:a:733 probability G ::::a::5 matrix T 2:a::37: bits 2.1 * ** 1.9 **** 1.7 **** 1.5 **** Relative 1.3 **** * Entropy 1.0 ******* (12.2 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACTCGCTG consensus T TCC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCGCTS MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:15745617-15745737 76 1.31e-05 AAATAACTTG ACTCGCTG TTCTGATTGG chrX:3740861-3740981 69 1.31e-05 CGTCATTCGG ACTCGCTG CTTTTTCCTC chrX:3719787-3719907 41 1.31e-05 CGAGTTGTGC ACTCGCTG GCGAGCGGTT chr3R:18399082-18399202 93 1.31e-05 TAAATTTGGC ACTCGCTG CCGCGACTTC chr2R:10444069-10444189 88 1.31e-05 TCTCGCGACC ACTCGCTG TTTTCGTCCT chr2R:14174736-14174856 70 1.31e-05 TCTCACCAAC ACTCGCTG CTTTCGGCAA chr3R:17606092-17606212 79 1.31e-05 ATCTCGTTCT ACTCGCTG GCGGCCAAAT chr2L:6089183-6089303 32 1.31e-05 TAACTGTAAT ACTCGCTG CCTGCCTGAG chr2R:5782725-5782845 50 1.31e-05 ACACGGCCCT ACTCGCTG TAATTGTTTT chrX:19718739-19718859 100 1.31e-05 CCAGAGGCGA ACTCGCTG CTTCGTTTCG chr3R:32015478-32015598 105 1.31e-05 AAGCTGTGGG ACTCGCTG CTTTCGCT chr3R:31669996-31670116 12 1.31e-05 CGCCGCAAGC ACTCGCTG AAGTTGCGCT chrX:18806523-18806643 103 1.31e-05 AGCGCGAAAG ACTCGCTG CTTTCCTTGC chr3R:29457326-29457446 54 1.31e-05 ATTTCCCCCT ACTCGCTG GGATCAAAAA chr2L:20426012-20426132 74 1.31e-05 CCAAAATGGC ACTCGCTG GGATTGAGGC chr2L:8030271-8030391 78 1.31e-05 GGAGTCTCTG ACTCGCTG AAATAAGCCT chrX:16598798-16598918 77 1.31e-05 CTGAATTTTA ACTCGCTG GAAATTCTTT chr2L:6339277-6339397 26 2.61e-05 CGTATCGCTC ACTCGCTC GCTcacacac chrX:19498111-19498231 80 2.61e-05 ATTTTTTGGT ACTCGCTC GGCgatccga chrX:3872246-3872366 30 2.61e-05 TATCACCACT ACTCGCTC GTTCTAACGC chrX:1922902-1923022 68 2.61e-05 TTCTGATTGG ACTCGCTC GAACGCCGCA chr2R:13190069-13190189 63 2.61e-05 CGTCGAAAGA actcgctc ttcgctcgca chrX:11716652-11716772 39 2.61e-05 TGTGTGTGCG ACTCGCTC GTTTTTGTAT chrX:7097465-7097585 32 2.61e-05 ACTGCTCTTT ACTCGCTC TATTCAGATG chr3L:19897489-19897609 84 2.61e-05 TGTTTACGTT ACTCGCTC TTGGCTCTCG chr2L:21828030-21828150 29 2.61e-05 TCACTCTCCT ACTCGCTC GCACAGCAAT chr3R:20897262-20897382 98 2.61e-05 AACGCTTTTC ACTCGCTC GTTGGTGTAC chr3L:11765092-11765212 105 2.61e-05 CAAGAATACT ACTCGCTC GTAGTACT chr3R:19903266-19903386 16 2.61e-05 TGGCTGCCCC ACTCGCTC TGCTTCTTCT chr3L:12147121-12147241 14 2.61e-05 TCGCTTTTTA ACTCGCTC TTAGCGATCG chrX:16683928-16684048 44 4.06e-05 CAACTGTTGC ACTCGTTG ACTGGCAGTC chr2R:10429926-10430046 107 4.06e-05 gtgGACAGTG ACTCGTTG GTTAGA chrX:6862557-6862677 21 4.06e-05 GCTCCGTCTC ACTCGTTG CTTTTCGCAC chr3R:18667794-18667914 51 4.06e-05 GTCGATAAGC ACTCGTTG CTGCGATAGT chr3R:27905870-27905990 35 4.06e-05 GTCGGCAACC ACTCGTTG ATTCAACAGT chr3R:9869178-9869298 96 4.06e-05 ATTGAAGAAT ACTCGTTG TCTTTTTGCT chr3R:24771333-24771453 40 5.25e-05 tcgcactggc actcGCCG CTTCTTACGC chr3L:331973-332093 96 5.25e-05 ATGCACGCAC ACTCGCCG AGTCAGAAAT chr3R:31748355-31748475 57 5.25e-05 GTGTGTAGCT ACTCGCCg aagaagaaga chr3R:10356356-10356476 70 5.25e-05 GTTCTCAGTA ACTCGCCG CATGTTTTGT chr3R:19643071-19643191 85 5.25e-05 GATGAAATGA ACTCGCCG CAAAAATCTT chr3R:14818003-14818123 69 5.25e-05 GTGCCAACAA ACTCGCCG AAGTTGCCGA chrX:5899391-5899511 51 5.25e-05 GTGTCTCGCC ACTCGCCG GTTGTTTTTT chr3R:5563596-5563716 80 5.25e-05 CTGGTTCTGC ACTCGCCG AGTGGCAGCC chr3L:11765781-11765901 79 5.25e-05 ACCTTCAAGC ACTCGCCG CTAGCTTACA chrX:12654308-12654428 5 6.51e-05 CGTG TCTCGCTG TGCGCTTCAA chr2R:8122927-8123047 21 6.51e-05 GCTGCTGGCG TCTCGCTG TTGTTACCCT chr3L:21014734-21014854 23 6.51e-05 TCTCATTTCG TCTCGCTG CTTTTTCTTC chr2L:16787710-16787830 28 6.51e-05 ATCCGTATCG TCTCGCTG TCGTACTCGT chr2L:9494684-9494804 62 7.94e-05 ATTTTTCTCT ACTcgttc gcctttcgct chrX:7109990-7110110 14 7.94e-05 TCCTTCCCCC ACTCGTTC TTCAGCCCCA chr2R:11890460-11890580 3 7.94e-05 TC ACTCGTTC CTTCTTTATT chr2L:21251052-21251172 6 7.94e-05 TTTTT ACTCGTTC GCTCTCTCTT chr2R:16638145-16638265 24 7.94e-05 CACAGAGCTC ACTCGTTC TCCACACATT chr3L:21009010-21009130 89 7.94e-05 CTAGGCGTGC ACTCGTTC TTGTTCACCC chr3R:16284963-16285083 40 7.94e-05 CACACTTGTC ACTCGTTC ATTTCGACTC chr3R:22580609-22580729 39 9.43e-05 CAAATATAGT ACTCGCTA ATACTATAAT chr2L:2677666-2677786 40 9.43e-05 CGCTCGGGTC ACTCGCTA CTGCCGCTGC chr2L:221278-221398 9 9.43e-05 GTATTTCC ACTCGCTA CAGACCGAAT chr3L:8576041-8576161 11 9.43e-05 AGCTGTTAGC ACTCGCTA CTGCGGAATC chr2R:13189342-13189462 99 9.43e-05 GGCAGGATAT ACTCGCTA CAGAGGAGAT chr2R:23964749-23964869 24 1.06e-04 CTCTGGCCAC ACTCGCCC GCCTCCTCGC chr2R:10110809-10110929 63 1.06e-04 GAAAGCTTTT ACTCGCCC AGTGATAACC chr3L:21026442-21026562 36 1.18e-04 CGTCTGTTTA TCTCGCTC TCGCTCGCTC chrX:16147644-16147764 12 1.18e-04 tcggtcgctc tctcgctc tcgctcgcac chr3R:31812543-31812663 49 1.18e-04 TGTGGTGCAG TCTCGCTC TTGCACGCTG chr2R:14008432-14008552 20 1.18e-04 CCAGTTGCCT TCTCGCTC CCCCAGCCAC chr3R:21446537-21446657 1 1.18e-04 . TCTCGCTC TGCTCGGCTC chr3L:21023436-21023556 20 1.18e-04 ACGCTCTCCG TCTCGCTC AGAGAAAGTT chrX:21324032-21324152 80 1.32e-04 CACTGTGAAA ACTCGTCG TTTAAGGTTA chr3R:15290892-15291012 68 1.32e-04 CCAGTTACGT ACTCGTCG CAGTCGCGTC chr2L:12436551-12436671 99 1.32e-04 ggaatggCTC ACTCGTCG TTATCGCAGC chr3L:6189075-6189195 16 1.32e-04 AAAATTGTAT ACTCGTCG ACTGGCAATC chr3R:30912546-30912666 82 1.32e-04 AGCTCTCGCT ACTCGTCG GCCAGAAGAC chr2R:6632422-6632542 80 1.32e-04 gcgagagGCC ACTCGTCG GATTATTGCG chr3R:21111312-21111432 106 1.45e-04 ACATCTCTAG TCTCGTTG GAAATAT chr2L:6644454-6644574 36 1.45e-04 TCCTGGGGCT TCTCGTTG TTCTTTTGGC chrX:9684310-9684430 79 1.45e-04 ATTCTCTCGG TCTCGTTG CACTCATCTG chr3R:6660080-6660200 70 1.45e-04 TCGGACTCAT TCTCGTTG CTCTCAGCTG chr3R:29869215-29869335 55 1.57e-04 ACGCGCGGAC TCTCGCCG CATTTTTGCG chr3R:16850755-16850875 73 1.57e-04 TAAAGGGGGG TCTCGCCG CTACGACAAA chr3L:16602898-16603018 66 1.73e-04 CACATACCCC ACTCGTTA AACCGAAATG chrX:11154045-11154165 98 1.73e-04 attattagtt actcgtta ttCGAAGTAA chr3L:11708507-11708627 50 1.73e-04 AAAACTAAGC ACTCGTTA TAACGGACGC chr2R:11293106-11293226 35 1.73e-04 TTTCTTATTT ACTCGTTA TCTCTCGAAA chrX:123957-124077 111 1.73e-04 ACCTTTTTAT ACTCGTTA CT chrX:19243525-19243645 45 2.14e-04 ATTGTTAGGT ACTCGCCA AAGTTGGGAA chr3R:17718527-17718647 67 2.28e-04 GATATCGATT TCTCGCTA CTCTGGGACG chr2L:18948859-18948979 68 2.28e-04 TTTATAATTT TCTCGCTA ATTTATTTTA chr2R:7989126-7989246 27 2.39e-04 TATGCTGCTC TCTCGCCC ATACACACAC chr2L:6082480-6082600 78 2.52e-04 CGAGCTTTGT TCTCGTCG AACTTTTCGG chr3R:22424800-22424920 23 2.52e-04 TAATCGCTCG TCTCGTCG GCATTTCGCA chr3R:6534200-6534320 78 2.82e-04 ACAGCAACCC TCTCGTTA CAATTGTGTT chr3R:11735479-11735599 102 3.08e-04 GATGCGCCGC TCTCGCCA CGGATTCGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCGCTS MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:15745617-15745737 1.3e-05 75_[+2]_37 chrX:3740861-3740981 1.3e-05 68_[+2]_44 chrX:3719787-3719907 1.3e-05 40_[+2]_72 chr3R:18399082-18399202 1.3e-05 92_[+2]_20 chr2R:10444069-10444189 1.3e-05 87_[+2]_25 chr2R:14174736-14174856 1.3e-05 69_[+2]_43 chr3R:17606092-17606212 1.3e-05 78_[+2]_34 chr2L:6089183-6089303 1.3e-05 31_[+2]_81 chr2R:5782725-5782845 1.3e-05 49_[+2]_63 chrX:19718739-19718859 1.3e-05 99_[+2]_13 chr3R:32015478-32015598 1.3e-05 104_[+2]_8 chr3R:31669996-31670116 1.3e-05 11_[+2]_101 chrX:18806523-18806643 1.3e-05 102_[+2]_10 chr3R:29457326-29457446 1.3e-05 53_[+2]_59 chr2L:20426012-20426132 1.3e-05 73_[+2]_39 chr2L:8030271-8030391 1.3e-05 77_[+2]_35 chrX:16598798-16598918 1.3e-05 76_[+2]_36 chr2L:6339277-6339397 2.6e-05 25_[+2]_87 chrX:19498111-19498231 2.6e-05 79_[+2]_33 chrX:3872246-3872366 2.6e-05 29_[+2]_83 chrX:1922902-1923022 2.6e-05 67_[+2]_45 chr2R:13190069-13190189 2.6e-05 62_[+2]_50 chrX:11716652-11716772 2.6e-05 38_[+2]_74 chrX:7097465-7097585 2.6e-05 31_[+2]_81 chr3L:19897489-19897609 2.6e-05 83_[+2]_29 chr2L:21828030-21828150 2.6e-05 28_[+2]_84 chr3R:20897262-20897382 2.6e-05 97_[+2]_15 chr3L:11765092-11765212 2.6e-05 104_[+2]_8 chr3R:19903266-19903386 2.6e-05 15_[+2]_97 chr3L:12147121-12147241 2.6e-05 13_[+2]_99 chrX:16683928-16684048 4.1e-05 43_[+2]_69 chr2R:10429926-10430046 4.1e-05 106_[+2]_6 chrX:6862557-6862677 4.1e-05 20_[+2]_92 chr3R:18667794-18667914 4.1e-05 50_[+2]_62 chr3R:27905870-27905990 4.1e-05 34_[+2]_78 chr3R:9869178-9869298 4.1e-05 95_[+2]_17 chr3R:24771333-24771453 5.2e-05 39_[+2]_73 chr3L:331973-332093 5.2e-05 95_[+2]_17 chr3R:31748355-31748475 5.2e-05 56_[+2]_56 chr3R:10356356-10356476 5.2e-05 69_[+2]_43 chr3R:19643071-19643191 5.2e-05 84_[+2]_28 chr3R:14818003-14818123 5.2e-05 68_[+2]_44 chrX:5899391-5899511 5.2e-05 50_[+2]_62 chr3R:5563596-5563716 5.2e-05 79_[+2]_33 chr3L:11765781-11765901 5.2e-05 78_[+2]_34 chrX:12654308-12654428 6.5e-05 4_[+2]_108 chr2R:8122927-8123047 6.5e-05 20_[+2]_92 chr3L:21014734-21014854 6.5e-05 22_[+2]_90 chr2L:16787710-16787830 6.5e-05 27_[+2]_85 chr2L:9494684-9494804 7.9e-05 61_[+2]_51 chrX:7109990-7110110 7.9e-05 13_[+2]_99 chr2R:11890460-11890580 7.9e-05 2_[+2]_110 chr2L:21251052-21251172 7.9e-05 5_[+2]_107 chr2R:16638145-16638265 7.9e-05 23_[+2]_89 chr3L:21009010-21009130 7.9e-05 88_[+2]_24 chr3R:16284963-16285083 7.9e-05 39_[+2]_73 chr3R:22580609-22580729 9.4e-05 38_[+2]_74 chr2L:2677666-2677786 9.4e-05 39_[+2]_73 chr2L:221278-221398 9.4e-05 8_[+2]_104 chr3L:8576041-8576161 9.4e-05 10_[+2]_102 chr2R:13189342-13189462 9.4e-05 98_[+2]_14 chr2R:23964749-23964869 0.00011 23_[+2]_89 chr2R:10110809-10110929 0.00011 62_[+2]_50 chr3L:21026442-21026562 0.00012 35_[+2]_77 chrX:16147644-16147764 0.00012 11_[+2]_101 chr3R:31812543-31812663 0.00012 48_[+2]_64 chr2R:14008432-14008552 0.00012 19_[+2]_93 chr3R:21446537-21446657 0.00012 [+2]_112 chr3L:21023436-21023556 0.00012 19_[+2]_93 chrX:21324032-21324152 0.00013 79_[+2]_33 chr3R:15290892-15291012 0.00013 67_[+2]_45 chr2L:12436551-12436671 0.00013 98_[+2]_14 chr3L:6189075-6189195 0.00013 15_[+2]_97 chr3R:30912546-30912666 0.00013 81_[+2]_31 chr2R:6632422-6632542 0.00013 79_[+2]_33 chr3R:21111312-21111432 0.00015 105_[+2]_7 chr2L:6644454-6644574 0.00015 35_[+2]_77 chrX:9684310-9684430 0.00015 78_[+2]_34 chr3R:6660080-6660200 0.00015 69_[+2]_43 chr3R:29869215-29869335 0.00016 54_[+2]_58 chr3R:16850755-16850875 0.00016 72_[+2]_40 chr3L:16602898-16603018 0.00017 65_[+2]_47 chrX:11154045-11154165 0.00017 97_[+2]_15 chr3L:11708507-11708627 0.00017 49_[+2]_63 chr2R:11293106-11293226 0.00017 34_[+2]_78 chrX:123957-124077 0.00017 110_[+2]_2 chrX:19243525-19243645 0.00021 44_[+2]_68 chr3R:17718527-17718647 0.00023 66_[+2]_46 chr2L:18948859-18948979 0.00023 67_[+2]_45 chr2R:7989126-7989246 0.00024 26_[+2]_86 chr2L:6082480-6082600 0.00025 77_[+2]_35 chr3R:22424800-22424920 0.00025 22_[+2]_90 chr3R:6534200-6534320 0.00028 77_[+2]_35 chr3R:11735479-11735599 0.00031 101_[+2]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCGCTS MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACTCGCTS width=8 seqs=94 chr2L:15745617-15745737 ( 76) ACTCGCTG 1 chrX:3740861-3740981 ( 69) ACTCGCTG 1 chrX:3719787-3719907 ( 41) ACTCGCTG 1 chr3R:18399082-18399202 ( 93) ACTCGCTG 1 chr2R:10444069-10444189 ( 88) ACTCGCTG 1 chr2R:14174736-14174856 ( 70) ACTCGCTG 1 chr3R:17606092-17606212 ( 79) ACTCGCTG 1 chr2L:6089183-6089303 ( 32) ACTCGCTG 1 chr2R:5782725-5782845 ( 50) ACTCGCTG 1 chrX:19718739-19718859 ( 100) ACTCGCTG 1 chr3R:32015478-32015598 ( 105) ACTCGCTG 1 chr3R:31669996-31670116 ( 12) ACTCGCTG 1 chrX:18806523-18806643 ( 103) ACTCGCTG 1 chr3R:29457326-29457446 ( 54) ACTCGCTG 1 chr2L:20426012-20426132 ( 74) ACTCGCTG 1 chr2L:8030271-8030391 ( 78) ACTCGCTG 1 chrX:16598798-16598918 ( 77) ACTCGCTG 1 chr2L:6339277-6339397 ( 26) ACTCGCTC 1 chrX:19498111-19498231 ( 80) ACTCGCTC 1 chrX:3872246-3872366 ( 30) ACTCGCTC 1 chrX:1922902-1923022 ( 68) ACTCGCTC 1 chr2R:13190069-13190189 ( 63) ACTCGCTC 1 chrX:11716652-11716772 ( 39) ACTCGCTC 1 chrX:7097465-7097585 ( 32) ACTCGCTC 1 chr3L:19897489-19897609 ( 84) ACTCGCTC 1 chr2L:21828030-21828150 ( 29) ACTCGCTC 1 chr3R:20897262-20897382 ( 98) ACTCGCTC 1 chr3L:11765092-11765212 ( 105) ACTCGCTC 1 chr3R:19903266-19903386 ( 16) ACTCGCTC 1 chr3L:12147121-12147241 ( 14) ACTCGCTC 1 chrX:16683928-16684048 ( 44) ACTCGTTG 1 chr2R:10429926-10430046 ( 107) ACTCGTTG 1 chrX:6862557-6862677 ( 21) ACTCGTTG 1 chr3R:18667794-18667914 ( 51) ACTCGTTG 1 chr3R:27905870-27905990 ( 35) ACTCGTTG 1 chr3R:9869178-9869298 ( 96) ACTCGTTG 1 chr3R:24771333-24771453 ( 40) ACTCGCCG 1 chr3L:331973-332093 ( 96) ACTCGCCG 1 chr3R:31748355-31748475 ( 57) ACTCGCCG 1 chr3R:10356356-10356476 ( 70) ACTCGCCG 1 chr3R:19643071-19643191 ( 85) ACTCGCCG 1 chr3R:14818003-14818123 ( 69) ACTCGCCG 1 chrX:5899391-5899511 ( 51) ACTCGCCG 1 chr3R:5563596-5563716 ( 80) ACTCGCCG 1 chr3L:11765781-11765901 ( 79) ACTCGCCG 1 chrX:12654308-12654428 ( 5) TCTCGCTG 1 chr2R:8122927-8123047 ( 21) TCTCGCTG 1 chr3L:21014734-21014854 ( 23) TCTCGCTG 1 chr2L:16787710-16787830 ( 28) TCTCGCTG 1 chr2L:9494684-9494804 ( 62) ACTCGTTC 1 chrX:7109990-7110110 ( 14) ACTCGTTC 1 chr2R:11890460-11890580 ( 3) ACTCGTTC 1 chr2L:21251052-21251172 ( 6) ACTCGTTC 1 chr2R:16638145-16638265 ( 24) ACTCGTTC 1 chr3L:21009010-21009130 ( 89) ACTCGTTC 1 chr3R:16284963-16285083 ( 40) ACTCGTTC 1 chr3R:22580609-22580729 ( 39) ACTCGCTA 1 chr2L:2677666-2677786 ( 40) ACTCGCTA 1 chr2L:221278-221398 ( 9) ACTCGCTA 1 chr3L:8576041-8576161 ( 11) ACTCGCTA 1 chr2R:13189342-13189462 ( 99) ACTCGCTA 1 chr2R:23964749-23964869 ( 24) ACTCGCCC 1 chr2R:10110809-10110929 ( 63) ACTCGCCC 1 chr3L:21026442-21026562 ( 36) TCTCGCTC 1 chrX:16147644-16147764 ( 12) TCTCGCTC 1 chr3R:31812543-31812663 ( 49) TCTCGCTC 1 chr2R:14008432-14008552 ( 20) TCTCGCTC 1 chr3R:21446537-21446657 ( 1) TCTCGCTC 1 chr3L:21023436-21023556 ( 20) TCTCGCTC 1 chrX:21324032-21324152 ( 80) ACTCGTCG 1 chr3R:15290892-15291012 ( 68) ACTCGTCG 1 chr2L:12436551-12436671 ( 99) ACTCGTCG 1 chr3L:6189075-6189195 ( 16) ACTCGTCG 1 chr3R:30912546-30912666 ( 82) ACTCGTCG 1 chr2R:6632422-6632542 ( 80) ACTCGTCG 1 chr3R:21111312-21111432 ( 106) TCTCGTTG 1 chr2L:6644454-6644574 ( 36) TCTCGTTG 1 chrX:9684310-9684430 ( 79) TCTCGTTG 1 chr3R:6660080-6660200 ( 70) TCTCGTTG 1 chr3R:29869215-29869335 ( 55) TCTCGCCG 1 chr3R:16850755-16850875 ( 73) TCTCGCCG 1 chr3L:16602898-16603018 ( 66) ACTCGTTA 1 chrX:11154045-11154165 ( 98) ACTCGTTA 1 chr3L:11708507-11708627 ( 50) ACTCGTTA 1 chr2R:11293106-11293226 ( 35) ACTCGTTA 1 chrX:123957-124077 ( 111) ACTCGTTA 1 chrX:19243525-19243645 ( 45) ACTCGCCA 1 chr3R:17718527-17718647 ( 67) TCTCGCTA 1 chr2L:18948859-18948979 ( 68) TCTCGCTA 1 chr2R:7989126-7989246 ( 27) TCTCGCCC 1 chr2L:6082480-6082600 ( 78) TCTCGTCG 1 chr3R:22424800-22424920 ( 23) TCTCGTCG 1 chr3R:6534200-6534320 ( 78) TCTCGTTA 1 chr3R:11735479-11735599 ( 102) TCTCGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCGCTS MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.8025 E= 1.0e-062 149 -1320 -1320 -8 -1320 210 -1320 -1320 -1320 -1320 -1320 195 -1320 210 -1320 -1320 -1320 -1320 207 -1320 -1320 152 -1320 35 -1320 13 -1320 152 -76 40 116 -1320 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCGCTS MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 94 E= 1.0e-062 0.755319 0.000000 0.000000 0.244681 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.670213 0.000000 0.329787 0.000000 0.255319 0.000000 0.744681 0.159574 0.308511 0.531915 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTCGCTS MEME-2 regular expression -------------------------------------------------------------------------------- [AT]CTCG[CT][TC][GC] -------------------------------------------------------------------------------- Time 13.90 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACAMAC MEME-3 width = 8 sites = 32 llr = 278 E-value = 8.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACAMAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:8:93a2 pos.-specific C :a:a:7:8 probability G ::2:1::: matrix T ::1:1::: bits 2.1 * 1.9 ** * * 1.7 ** * * 1.5 ** * ** Relative 1.3 ** ** ** Entropy 1.0 ******** (12.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACACACAC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAMAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:6605728-6605848 49 1.59e-05 AACAACGAGC ACACACAC TCGCGCGTGA chr3L:17573962-17574082 61 1.59e-05 atacccatac acacacac aCAGGCCGAA chr2L:6339277-6339397 44 1.59e-05 GCTcacacac acacacac acacaGAAGA chr2R:13190069-13190189 96 1.59e-05 actcgcactc acacacac agcaagcacg chr3R:24234267-24234387 75 1.59e-05 ATTTACGAac acacacac aaacacaggc chr3R:27281431-27281551 25 1.59e-05 TCACCCACAC ACACACAC GGACGGGGAC chrX:16149123-16149243 55 1.59e-05 gcacaggagc acacacac aaagcacctc chr3R:31221765-31221885 5 1.59e-05 CCGC ACACACAC GCCCTGTTTT chr2L:6082480-6082600 6 1.59e-05 TTCAC ACACACAC ACGCATATCG chr2R:7989126-7989246 39 1.59e-05 TCGCCCATAC ACACACAC ACACATACGT chr3R:4821161-4821281 47 1.59e-05 tcgcacacac acacacac acTATAGTAG chrX:21324032-21324152 62 3.43e-05 ACAAACCGTG ACACAAAC CACTGTGAAA chrX:16147644-16147764 85 3.43e-05 ACGCCCTGCG acacaaac aaaccagcaa chr2R:14174736-14174856 11 3.43e-05 CAATGCATAC ACACAAAC GCACACACGC chrX:9686943-9687063 28 3.43e-05 AAAGTAAGGA ACACAAAC CGATAGTTAA chr3R:9869178-9869298 53 3.43e-05 ATAAGCAAAG ACACAAAC CAATGTAATA chr3L:15161709-15161829 86 4.84e-05 TTGACAGCTc acgcacac catcactcag chrX:9684854-9684974 92 4.84e-05 ACACTCACGC ACGCACAC ATTTGGGGTT chr2L:6644454-6644574 83 6.67e-05 CGATGACATC ACACACAA AGTAGTGTTA chrX:11716652-11716772 86 6.67e-05 ACGCACCAAT ACACACAA GTGGTTGTTC chr2L:5325028-5325148 52 8.30e-05 GGTTTACGAC ACGCAAAC ATAGAAACGC chr3L:11708507-11708627 64 8.30e-05 GTTATAACGG ACGCAAAC GCGCAGCTCG chr3R:24771333-24771453 16 1.12e-04 cactaccacc actcacac tcatactcgc chrX:19718739-19718859 39 1.12e-04 ccgCATCGCA ACACGCAC GCAAGTAATG chr3R:31669996-31670116 58 1.12e-04 GGCAAACACA ACACGCAC GATTCCGTGA chr3L:21009010-21009130 109 1.28e-04 GTTCACCCAC ACACTCAC TAGC chr2R:18158105-18158225 34 1.49e-04 TCGATTTATA ACACAAAA AGCATTGCTT chrX:19697022-19697142 106 1.49e-04 GAGAACGCTA ACACAAAA GGAAATA chrX:8650571-8650691 63 1.99e-04 GCGACGGACG ACGCACAA AAACAACCCG chrX:123957-124077 29 1.99e-04 TGTTTCGGAG ACTCAAAC CATATAGAAC chr3R:9038788-9038908 77 2.16e-04 AAAACTATCG ACACTAAC GCGAAACCAG chr2L:10736080-10736200 11 2.34e-04 GCTCCCTTGC ACATACAC TTGTAAATAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAMAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6605728-6605848 1.6e-05 48_[+3]_64 chr3L:17573962-17574082 1.6e-05 60_[+3]_52 chr2L:6339277-6339397 1.6e-05 43_[+3]_69 chr2R:13190069-13190189 1.6e-05 95_[+3]_17 chr3R:24234267-24234387 1.6e-05 74_[+3]_38 chr3R:27281431-27281551 1.6e-05 24_[+3]_88 chrX:16149123-16149243 1.6e-05 54_[+3]_58 chr3R:31221765-31221885 1.6e-05 4_[+3]_108 chr2L:6082480-6082600 1.6e-05 5_[+3]_107 chr2R:7989126-7989246 1.6e-05 38_[+3]_74 chr3R:4821161-4821281 1.6e-05 46_[+3]_66 chrX:21324032-21324152 3.4e-05 61_[+3]_51 chrX:16147644-16147764 3.4e-05 84_[+3]_28 chr2R:14174736-14174856 3.4e-05 10_[+3]_102 chrX:9686943-9687063 3.4e-05 27_[+3]_85 chr3R:9869178-9869298 3.4e-05 52_[+3]_60 chr3L:15161709-15161829 4.8e-05 85_[+3]_27 chrX:9684854-9684974 4.8e-05 91_[+3]_21 chr2L:6644454-6644574 6.7e-05 82_[+3]_30 chrX:11716652-11716772 6.7e-05 85_[+3]_27 chr2L:5325028-5325148 8.3e-05 51_[+3]_61 chr3L:11708507-11708627 8.3e-05 63_[+3]_49 chr3R:24771333-24771453 0.00011 15_[+3]_97 chrX:19718739-19718859 0.00011 38_[+3]_74 chr3R:31669996-31670116 0.00011 57_[+3]_55 chr3L:21009010-21009130 0.00013 108_[+3]_4 chr2R:18158105-18158225 0.00015 33_[+3]_79 chrX:19697022-19697142 0.00015 105_[+3]_7 chrX:8650571-8650691 0.0002 62_[+3]_50 chrX:123957-124077 0.0002 28_[+3]_84 chr3R:9038788-9038908 0.00022 76_[+3]_36 chr2L:10736080-10736200 0.00023 10_[+3]_102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAMAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACAMAC width=8 seqs=32 chr2R:6605728-6605848 ( 49) ACACACAC 1 chr3L:17573962-17574082 ( 61) ACACACAC 1 chr2L:6339277-6339397 ( 44) ACACACAC 1 chr2R:13190069-13190189 ( 96) ACACACAC 1 chr3R:24234267-24234387 ( 75) ACACACAC 1 chr3R:27281431-27281551 ( 25) ACACACAC 1 chrX:16149123-16149243 ( 55) ACACACAC 1 chr3R:31221765-31221885 ( 5) ACACACAC 1 chr2L:6082480-6082600 ( 6) ACACACAC 1 chr2R:7989126-7989246 ( 39) ACACACAC 1 chr3R:4821161-4821281 ( 47) ACACACAC 1 chrX:21324032-21324152 ( 62) ACACAAAC 1 chrX:16147644-16147764 ( 85) ACACAAAC 1 chr2R:14174736-14174856 ( 11) ACACAAAC 1 chrX:9686943-9687063 ( 28) ACACAAAC 1 chr3R:9869178-9869298 ( 53) ACACAAAC 1 chr3L:15161709-15161829 ( 86) ACGCACAC 1 chrX:9684854-9684974 ( 92) ACGCACAC 1 chr2L:6644454-6644574 ( 83) ACACACAA 1 chrX:11716652-11716772 ( 86) ACACACAA 1 chr2L:5325028-5325148 ( 52) ACGCAAAC 1 chr3L:11708507-11708627 ( 64) ACGCAAAC 1 chr3R:24771333-24771453 ( 16) ACTCACAC 1 chrX:19718739-19718859 ( 39) ACACGCAC 1 chr3R:31669996-31670116 ( 58) ACACGCAC 1 chr3L:21009010-21009130 ( 109) ACACTCAC 1 chr2R:18158105-18158225 ( 34) ACACAAAA 1 chrX:19697022-19697142 ( 106) ACACAAAA 1 chrX:8650571-8650691 ( 63) ACGCACAA 1 chrX:123957-124077 ( 29) ACTCAAAC 1 chr3R:9038788-9038908 ( 77) ACACTAAC 1 chr2L:10736080-10736200 ( 11) ACATACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAMAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1072 E= 8.7e+001 189 -1164 -1164 -1164 -1164 210 -1164 -1164 153 -1164 -61 -205 -1164 205 -1164 -305 170 -1164 -193 -205 35 149 -1164 -1164 189 -1164 -1164 -1164 -79 185 -1164 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAMAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 8.7e+001 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.781250 0.000000 0.156250 0.062500 0.000000 0.968750 0.000000 0.031250 0.875000 0.000000 0.062500 0.062500 0.343750 0.656250 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.156250 0.843750 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACAMAC MEME-3 regular expression -------------------------------------------------------------------------------- ACACA[CA]AC -------------------------------------------------------------------------------- Time 19.77 secs. ******************************************************************************** ******************************************************************************** MOTIF AGMGAGMR MEME-4 width = 8 sites = 66 llr = 502 E-value = 3.8e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGMGAGMR MEME-4 Description -------------------------------------------------------------------------------- Simplified A 8:4:a353 pos.-specific C ::6:::3: probability G 2a:a:7:7 matrix T ::::::2: bits 2.1 * * 1.9 * ** 1.7 * ** 1.5 * ** Relative 1.3 * *** Entropy 1.0 ****** * (11.0 bits) 0.8 ****** * 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGCGAGAG consensus G A ACA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMGAGMR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:9330658-9330778 57 1.48e-05 ACCCGTACTA AGCGAGAG CACTGAAATT chr2L:8675716-8675836 76 1.48e-05 GAGCAGCAAG AGCGAGAG CAACGAGAAC chrX:9931007-9931127 10 1.48e-05 agagggaag agcgagag accgctgaag chr2R:6632422-6632542 69 1.48e-05 agtgagattg agcgagag GCCACTCGTC chr2R:15890930-15891050 68 1.48e-05 agtagcaagc agcgagag agtatcggcg chr2L:9460175-9460295 90 1.48e-05 AGCGAGTGCG AGCGAGAG GGCTAGCGAA chr2R:6605728-6605848 101 2.76e-05 AGATTGACGG AGCGAGCG AGACAGTCGA chr2R:10124385-10124505 60 2.76e-05 TAGTGTTTAT AGCGAGCG GAAAAGCTTA chr3L:11765092-11765212 4 2.76e-05 GTG AGCGAGCG AGACAACAGC chr2L:18485383-18485503 46 2.76e-05 TGTTGGTAAC AGCGAGCG ATCGCGGCAT chr2L:19054309-19054429 38 2.76e-05 GCGGCCGAAC AGCGAGCG TTTTGCGAAG chr3L:21026442-21026562 100 4.46e-05 AGAGGCAGAC AGAGAGAG ACCGAGCACA chrX:3740861-3740981 45 4.46e-05 agatagtgag agagagag agCGCGCGTC chr3L:21009010-21009130 46 4.46e-05 CGAGTAAGAG AGAGAGAG TGGTTGTTTG chr2L:3772864-3772984 53 4.46e-05 agagaaggag agagagag aaagaCCCAA chr2R:6236110-6236230 32 4.46e-05 tgcgagagag agagagag aaagacggag chr3L:8060489-8060609 81 4.46e-05 AGTTTGGTCA AGAGAGAG TATATTCTTG chrX:7097260-7097380 22 4.46e-05 TGGACGGgag agagagag agaaggagtg chrX:19697022-19697142 91 4.46e-05 AGCTCGCTGG AGAGAGAG AACGCTAACA chr2L:1346158-1346278 102 7.56e-05 AGATGGCGCC AGCGAGAA GTTCAAATCG chr2R:16636252-16636372 38 7.56e-05 ATTGTAAAGT AGCGAGAA CTCGATGGTT chrX:13211633-13211753 85 7.56e-05 ATAATGGTGA AGCGAGAA AACGTCAGTT chr3R:30909189-30909309 40 7.56e-05 GCCAGTGAGC AGCGAGTG CCAAAAGAAA chr2L:6494457-6494577 60 8.86e-05 TTCGACGTTC GGCGAGAG ACTGAAGAAA chr3L:21026241-21026361 71 8.86e-05 AGCGGCGAGT GGCGAGAG AGCAGAAGAG chr2L:9493988-9494108 78 8.86e-05 GAGTGGTGCG GGCGAGAG AGGGGAAGCA chr2R:19457079-19457199 38 1.20e-04 CTTCCCCAAA AGAGAGCG AAAACCCCCC chr2R:16638145-16638265 48 1.20e-04 CATTTCAGCC AGCGAAAG CTGTTGCTGT chr2L:5278467-5278587 50 1.35e-04 ATGCAGTAAT AGCGAGCA CGGTGGCGCG chrX:18282492-18282612 105 1.46e-04 GGCGGCATGC GGCGAGCG CGACATGA chrX:19243525-19243645 84 1.96e-04 TTTTTCCGTC AGAGAGTG TTTTTGGTAA chr3L:22835428-22835548 27 1.96e-04 AATCGAACGA AGCGAACG CAAAGAGACG chrX:9685056-9685176 20 1.96e-04 CACGAGTCCG AGAGAGAA AGCATGCGAT chr2R:10429926-10430046 53 1.96e-04 tgcgagaggg agagagtg ctgccagtgt chrX:11713798-11713918 63 1.96e-04 cgtgagagac agagagaa tgcgagtgcg chr3R:32015478-32015598 76 1.96e-04 TCCCACATGC AGAGAGAA AGAGTGGGAG chrX:18806523-18806643 61 1.96e-04 CCGGGAGgag agcgaacg agagcgaacg chr2R:22689027-22689147 88 2.12e-04 AGTAGAGAGT AGCGAGTA GGTATTCGTC chrX:531118-531238 95 2.12e-04 GACAGATAGC AGCGAGTA CTCTCGTAGC chr3L:14992104-14992224 89 2.27e-04 AGTGGGCGAA GGAGAGAG GGAGAAAGGA chr2R:13189342-13189462 53 2.27e-04 TAGTTAACAA GGAGAGAG CAAATATGGT chr2L:18944266-18944386 60 2.74e-04 ACAGTTAGAG GGCGAGAA TAATCGCGGC chrX:9684854-9684974 18 2.74e-04 GGCGGCGAGT GGCGAGTG GGGTGCGAGC chr3L:6189075-6189195 35 2.74e-04 CTGGCAATCG GGCGAGTG GGCAATAAGC chr3L:21023436-21023556 28 2.74e-04 CGTCTCGCTC AGAGAAAG TTTGGCGTTT chr2L:7419990-7420110 70 2.74e-04 CTGCGTCAGC GGCGAGTG TGCAAGTGCG chr3L:17573962-17574082 8 3.26e-04 ACAAAGC AGCGAATG CAGCGAGCGG chr2R:19164135-19164255 3 3.26e-04 TG AGCGAATG TTATTCTCTC chr3L:15161709-15161829 44 3.26e-04 AGGCAAGCCG AGCGAAAA ACAAAGTGGC chr2R:22998858-22998978 56 3.26e-04 CCACTCGGCC Agcgaatg gggatggcca chrX:3775970-3776090 54 3.26e-04 cgctgagagc agagagca gaACGACATT chr3R:5563596-5563716 9 3.26e-04 GAACACGA AGCGAAAA ATGGTTGACA chr3L:1637740-1637860 65 3.26e-04 GATGGCCAGC AGCGAATG GTGTTCCAGC chr3L:5360135-5360255 79 3.26e-04 CACCTCCGCG AGAGAGCA GCGAAGAAGA chr3L:12147121-12147241 52 3.54e-04 GGTGAGAACG GGAGAGCG ATCAAACGGT chr3R:14818003-14818123 8 3.83e-04 GCAGGTA GGCGAGCA CTCTCTTCTA chr3L:19896416-19896536 79 3.83e-04 ATTACAAGTG AGAGAACG GAAGTAGCGA chr2L:1158116-1158236 34 4.18e-04 GAAGCTGCGT AGCGAACA CCGGCGAAAT chr3R:17718856-17718976 2 4.18e-04 A AGAGAGTA AATACAATTT chrX:8650571-8650691 19 4.62e-04 TCGAACGAGC GGCGAACG GGGCGAATGA chr3L:8359047-8359167 34 4.62e-04 ATAAGCACTC GGCGAACG CGTAAACATG chr2L:246817-246937 34 5.17e-04 TTTTGTCGGC AGAGAAAa aaacaaaaag chr3R:5778863-5778983 10 5.17e-04 AAACTAACT AGAGAAAA ACTGAAGTTC chr3L:11765781-11765901 36 5.35e-04 TGTGTTTAAT AGCGAATA TTTTGGCATC chr3R:21347809-21347929 39 5.98e-04 GCGAGCGAGT GGAGAGCA ACGACGGCGA chrX:9684310-9684430 33 5.98e-04 CCGAAGACGG GGCGAAAA GGGAAGAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMGAGMR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:9330658-9330778 1.5e-05 56_[+4]_56 chr2L:8675716-8675836 1.5e-05 75_[+4]_37 chrX:9931007-9931127 1.5e-05 9_[+4]_103 chr2R:6632422-6632542 1.5e-05 68_[+4]_44 chr2R:15890930-15891050 1.5e-05 67_[+4]_45 chr2L:9460175-9460295 1.5e-05 89_[+4]_23 chr2R:6605728-6605848 2.8e-05 100_[+4]_12 chr2R:10124385-10124505 2.8e-05 59_[+4]_53 chr3L:11765092-11765212 2.8e-05 3_[+4]_109 chr2L:18485383-18485503 2.8e-05 45_[+4]_67 chr2L:19054309-19054429 2.8e-05 37_[+4]_75 chr3L:21026442-21026562 4.5e-05 99_[+4]_13 chrX:3740861-3740981 4.5e-05 44_[+4]_68 chr3L:21009010-21009130 4.5e-05 45_[+4]_67 chr2L:3772864-3772984 4.5e-05 52_[+4]_60 chr2R:6236110-6236230 4.5e-05 31_[+4]_81 chr3L:8060489-8060609 4.5e-05 80_[+4]_32 chrX:7097260-7097380 4.5e-05 21_[+4]_91 chrX:19697022-19697142 4.5e-05 90_[+4]_22 chr2L:1346158-1346278 7.6e-05 101_[+4]_11 chr2R:16636252-16636372 7.6e-05 37_[+4]_75 chrX:13211633-13211753 7.6e-05 84_[+4]_28 chr3R:30909189-30909309 7.6e-05 39_[+4]_73 chr2L:6494457-6494577 8.9e-05 59_[+4]_53 chr3L:21026241-21026361 8.9e-05 70_[+4]_42 chr2L:9493988-9494108 8.9e-05 77_[+4]_35 chr2R:19457079-19457199 0.00012 37_[+4]_75 chr2R:16638145-16638265 0.00012 47_[+4]_65 chr2L:5278467-5278587 0.00013 49_[+4]_63 chrX:18282492-18282612 0.00015 104_[+4]_8 chrX:19243525-19243645 0.0002 83_[+4]_29 chr3L:22835428-22835548 0.0002 26_[+4]_86 chrX:9685056-9685176 0.0002 19_[+4]_93 chr2R:10429926-10430046 0.0002 52_[+4]_60 chrX:11713798-11713918 0.0002 62_[+4]_50 chr3R:32015478-32015598 0.0002 75_[+4]_37 chrX:18806523-18806643 0.0002 60_[+4]_52 chr2R:22689027-22689147 0.00021 87_[+4]_25 chrX:531118-531238 0.00021 94_[+4]_18 chr3L:14992104-14992224 0.00023 88_[+4]_24 chr2R:13189342-13189462 0.00023 52_[+4]_60 chr2L:18944266-18944386 0.00027 59_[+4]_53 chrX:9684854-9684974 0.00027 17_[+4]_95 chr3L:6189075-6189195 0.00027 34_[+4]_78 chr3L:21023436-21023556 0.00027 27_[+4]_85 chr2L:7419990-7420110 0.00027 69_[+4]_43 chr3L:17573962-17574082 0.00033 7_[+4]_105 chr2R:19164135-19164255 0.00033 2_[+4]_110 chr3L:15161709-15161829 0.00033 43_[+4]_69 chr2R:22998858-22998978 0.00033 55_[+4]_57 chrX:3775970-3776090 0.00033 53_[+4]_59 chr3R:5563596-5563716 0.00033 8_[+4]_104 chr3L:1637740-1637860 0.00033 64_[+4]_48 chr3L:5360135-5360255 0.00033 78_[+4]_34 chr3L:12147121-12147241 0.00035 51_[+4]_61 chr3R:14818003-14818123 0.00038 7_[+4]_105 chr3L:19896416-19896536 0.00038 78_[+4]_34 chr2L:1158116-1158236 0.00042 33_[+4]_79 chr3R:17718856-17718976 0.00042 1_[+4]_111 chrX:8650571-8650691 0.00046 18_[+4]_94 chr3L:8359047-8359167 0.00046 33_[+4]_79 chr2L:246817-246937 0.00052 33_[+4]_79 chr3R:5778863-5778983 0.00052 9_[+4]_103 chr3L:11765781-11765901 0.00054 35_[+4]_77 chr3R:21347809-21347929 0.0006 38_[+4]_74 chrX:9684310-9684430 0.0006 32_[+4]_80 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMGAGMR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGMGAGMR width=8 seqs=66 chr2L:9330658-9330778 ( 57) AGCGAGAG 1 chr2L:8675716-8675836 ( 76) AGCGAGAG 1 chrX:9931007-9931127 ( 10) AGCGAGAG 1 chr2R:6632422-6632542 ( 69) AGCGAGAG 1 chr2R:15890930-15891050 ( 68) AGCGAGAG 1 chr2L:9460175-9460295 ( 90) AGCGAGAG 1 chr2R:6605728-6605848 ( 101) AGCGAGCG 1 chr2R:10124385-10124505 ( 60) AGCGAGCG 1 chr3L:11765092-11765212 ( 4) AGCGAGCG 1 chr2L:18485383-18485503 ( 46) AGCGAGCG 1 chr2L:19054309-19054429 ( 38) AGCGAGCG 1 chr3L:21026442-21026562 ( 100) AGAGAGAG 1 chrX:3740861-3740981 ( 45) AGAGAGAG 1 chr3L:21009010-21009130 ( 46) AGAGAGAG 1 chr2L:3772864-3772984 ( 53) AGAGAGAG 1 chr2R:6236110-6236230 ( 32) AGAGAGAG 1 chr3L:8060489-8060609 ( 81) AGAGAGAG 1 chrX:7097260-7097380 ( 22) AGAGAGAG 1 chrX:19697022-19697142 ( 91) AGAGAGAG 1 chr2L:1346158-1346278 ( 102) AGCGAGAA 1 chr2R:16636252-16636372 ( 38) AGCGAGAA 1 chrX:13211633-13211753 ( 85) AGCGAGAA 1 chr3R:30909189-30909309 ( 40) AGCGAGTG 1 chr2L:6494457-6494577 ( 60) GGCGAGAG 1 chr3L:21026241-21026361 ( 71) GGCGAGAG 1 chr2L:9493988-9494108 ( 78) GGCGAGAG 1 chr2R:19457079-19457199 ( 38) AGAGAGCG 1 chr2R:16638145-16638265 ( 48) AGCGAAAG 1 chr2L:5278467-5278587 ( 50) AGCGAGCA 1 chrX:18282492-18282612 ( 105) GGCGAGCG 1 chrX:19243525-19243645 ( 84) AGAGAGTG 1 chr3L:22835428-22835548 ( 27) AGCGAACG 1 chrX:9685056-9685176 ( 20) AGAGAGAA 1 chr2R:10429926-10430046 ( 53) AGAGAGTG 1 chrX:11713798-11713918 ( 63) AGAGAGAA 1 chr3R:32015478-32015598 ( 76) AGAGAGAA 1 chrX:18806523-18806643 ( 61) AGCGAACG 1 chr2R:22689027-22689147 ( 88) AGCGAGTA 1 chrX:531118-531238 ( 95) AGCGAGTA 1 chr3L:14992104-14992224 ( 89) GGAGAGAG 1 chr2R:13189342-13189462 ( 53) GGAGAGAG 1 chr2L:18944266-18944386 ( 60) GGCGAGAA 1 chrX:9684854-9684974 ( 18) GGCGAGTG 1 chr3L:6189075-6189195 ( 35) GGCGAGTG 1 chr3L:21023436-21023556 ( 28) AGAGAAAG 1 chr2L:7419990-7420110 ( 70) GGCGAGTG 1 chr3L:17573962-17574082 ( 8) AGCGAATG 1 chr2R:19164135-19164255 ( 3) AGCGAATG 1 chr3L:15161709-15161829 ( 44) AGCGAAAA 1 chr2R:22998858-22998978 ( 56) AGCGAATG 1 chrX:3775970-3776090 ( 54) AGAGAGCA 1 chr3R:5563596-5563716 ( 9) AGCGAAAA 1 chr3L:1637740-1637860 ( 65) AGCGAATG 1 chr3L:5360135-5360255 ( 79) AGAGAGCA 1 chr3L:12147121-12147241 ( 52) GGAGAGCG 1 chr3R:14818003-14818123 ( 8) GGCGAGCA 1 chr3L:19896416-19896536 ( 79) AGAGAACG 1 chr2L:1158116-1158236 ( 34) AGCGAACA 1 chr3R:17718856-17718976 ( 2) AGAGAGTA 1 chrX:8650571-8650691 ( 19) GGCGAACG 1 chr3L:8359047-8359167 ( 34) GGCGAACG 1 chr2L:246817-246937 ( 34) AGAGAAAA 1 chr3R:5778863-5778983 ( 10) AGAGAAAA 1 chr3L:11765781-11765901 ( 36) AGCGAATA 1 chr3R:21347809-21347929 ( 39) GGAGAGCA 1 chrX:9684310-9684430 ( 33) GGCGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMGAGMR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.0842 E= 3.8e-002 149 -1269 3 -1269 -1269 -1269 207 -1269 49 141 -1269 -1269 -1269 -1269 207 -1269 189 -1269 -1269 -1269 2 -1269 161 -1269 89 30 -1269 -29 31 -1269 149 -1269 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMGAGMR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 3.8e-002 0.757576 0.000000 0.242424 0.000000 0.000000 0.000000 1.000000 0.000000 0.378788 0.621212 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.272727 0.000000 0.727273 0.000000 0.500000 0.287879 0.000000 0.212121 0.333333 0.000000 0.666667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGMGAGMR MEME-4 regular expression -------------------------------------------------------------------------------- [AG]G[CA]GA[GA][ACT][GA] -------------------------------------------------------------------------------- Time 25.60 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTGTTTT MEME-5 width = 8 sites = 41 llr = 334 E-value = 9.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::2: pos.-specific C ::2:2::: probability G 2::8:::: matrix T 8a828a7a bits 2.1 1.9 * * * 1.7 * * * 1.5 * * * Relative 1.3 ****** * Entropy 1.0 ******** (11.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTGTTTT consensus G CT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19243525-19243645 70 1.86e-05 GAATACCCCA TTTGTTTT TCCGTCAGAG chr2L:6644454-6644574 57 1.86e-05 TTTTGGCGCT TTTGTTTT AGCGACAACG chr3L:19897489-19897609 24 1.86e-05 GATTTTTTGG TTTGTTTT GCGTTACGCG chr2R:22136919-22137039 57 1.86e-05 GTGTTCAATC TTTGTTTT CGTAGCGCGG chr2L:18948859-18948979 111 1.86e-05 TAGTTTCCAA TTTGTTTT GA chr2L:7782822-7782942 100 1.86e-05 CCAGCGGATT TTTGTTTT TAATTATTTT chr2R:7489890-7490010 22 5.25e-05 gctgGTTTTT GTTGTTTT TGTCATTCGC chr3L:9509525-9509645 37 5.25e-05 TTTTCAAACG TTCGTTTT GTGAGAATGG chrX:3780079-3780199 9 5.25e-05 CTTTCGCT GTTGTTTT TAATCGAACG chr3R:24234066-24234186 63 5.25e-05 CCTAGCTGCT GTTGTTTT TGTTGTTGCA chr3L:6189075-6189195 91 5.25e-05 CGAGTGCGTA GTTGTTTT GCGTTTCAGG chr2L:922751-922871 48 5.25e-05 GATTTCAGTC TTCGTTTT GCCTCCGAGT chrX:5899391-5899511 59 5.25e-05 CCACTCGCCG GTTGTTTT TTTCTTTTTA chr3R:20897262-20897382 5 5.25e-05 TCCT TTCGTTTT CTGTCCGCCA chr3R:23943179-23943299 102 7.19e-05 AGATTAGGTA TTTGTTAT CGGTTTCACG chr2L:5325028-5325148 3 7.19e-05 AT TTTGTTAT CGATATCTAT chr2R:23925148-23925268 94 7.19e-05 TCTCCCCACT TTTGTTAT TTCAACCGTG chr3L:21023436-21023556 43 7.19e-05 AAGTTTGGCG TTTGTTAT TGTTTCGTTA chr3R:6660080-6660200 30 7.19e-05 AAAACAGGCT TTTGTTAT CTTAGCCTTT chrX:19268811-19268931 19 1.09e-04 AGTATTTTCC TTTTTTTT ATTTGTTCTG chr2L:21251052-21251172 35 1.09e-04 CCCAGCGGGC TTTTTTTT GAATGTCCCT chr3R:10356356-10356476 17 1.09e-04 TTTTGCTGCC TTTGCTTT ACTTCGTTTC chrX:6862557-6862677 72 1.09e-04 TTTTTCCCAT TTTTTTTT GTTAATTCAT chr2L:6089183-6089303 58 1.09e-04 AGTGCGTGTC TTTGCTTT TTGACCTAGG chr3R:22424800-22424920 6 1.09e-04 CAGCG TTTTTTTT AATCGCTCGT chrX:7097260-7097380 66 1.09e-04 CGGCTTTGCT TTTGCTTT GCTGTTGTTG chrX:16598798-16598918 22 1.09e-04 GTTTATTATA TTTGCTTT ATTTCTAATG chrX:3775970-3776090 99 1.24e-04 TGGTGTCGGT GTCGTTTT GGTTTTGTCG chr2R:23744767-23744887 96 1.60e-04 ACAGCTTCGT TTCGTTAT TTATTTAATA chr2R:9578008-9578128 107 1.60e-04 ACAAAATGTT GTTGTTAT TGTTGA chrX:10621567-10621687 108 1.60e-04 GTGCTGGGTT GTTGTTAT TCTTC chr3L:9430503-9430623 105 1.60e-04 GTCATGGAAA TTCGTTAT CAGACAGC chr3L:331973-332093 73 2.27e-04 GCGATCGCCG TTCGCTTT GAGCAATGCA chr2R:23964749-23964869 77 2.27e-04 AACACCTCAC TTCGCTTT CAAAGTTCGC chr3R:16850755-16850875 108 2.27e-04 ATTCTCTCGT TTCTTTTT TGTCT chr3R:18667794-18667914 113 2.27e-04 AATAATTTTG GTTTTTTT chrX:9686943-9687063 106 2.27e-04 CCCTTTTCCA GTTTTTTT CAACCCA chr3L:12147121-12147241 3 2.27e-04 TG TTCGCTTT TTAACTCGCT chr3L:11708707-11708827 21 2.66e-04 CAAACCATAT TTTTTTAT TAACTTATGA chrX:12654308-12654428 84 2.84e-04 GCCTTCGAAA TTTTCTTT TGTGTAAAAC chr2L:15745617-15745737 41 3.17e-04 AACGTTTTTG TTTGTTGT TGGTGTTGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19243525-19243645 1.9e-05 69_[+5]_43 chr2L:6644454-6644574 1.9e-05 56_[+5]_56 chr3L:19897489-19897609 1.9e-05 23_[+5]_89 chr2R:22136919-22137039 1.9e-05 56_[+5]_56 chr2L:18948859-18948979 1.9e-05 110_[+5]_2 chr2L:7782822-7782942 1.9e-05 99_[+5]_13 chr2R:7489890-7490010 5.3e-05 21_[+5]_91 chr3L:9509525-9509645 5.3e-05 36_[+5]_76 chrX:3780079-3780199 5.3e-05 8_[+5]_104 chr3R:24234066-24234186 5.3e-05 62_[+5]_50 chr3L:6189075-6189195 5.3e-05 90_[+5]_22 chr2L:922751-922871 5.3e-05 47_[+5]_65 chrX:5899391-5899511 5.3e-05 58_[+5]_54 chr3R:20897262-20897382 5.3e-05 4_[+5]_108 chr3R:23943179-23943299 7.2e-05 101_[+5]_11 chr2L:5325028-5325148 7.2e-05 2_[+5]_110 chr2R:23925148-23925268 7.2e-05 93_[+5]_19 chr3L:21023436-21023556 7.2e-05 42_[+5]_70 chr3R:6660080-6660200 7.2e-05 29_[+5]_83 chrX:19268811-19268931 0.00011 18_[+5]_94 chr2L:21251052-21251172 0.00011 34_[+5]_78 chr3R:10356356-10356476 0.00011 16_[+5]_96 chrX:6862557-6862677 0.00011 71_[+5]_41 chr2L:6089183-6089303 0.00011 57_[+5]_55 chr3R:22424800-22424920 0.00011 5_[+5]_107 chrX:7097260-7097380 0.00011 65_[+5]_47 chrX:16598798-16598918 0.00011 21_[+5]_91 chrX:3775970-3776090 0.00012 98_[+5]_14 chr2R:23744767-23744887 0.00016 95_[+5]_17 chr2R:9578008-9578128 0.00016 106_[+5]_6 chrX:10621567-10621687 0.00016 107_[+5]_5 chr3L:9430503-9430623 0.00016 104_[+5]_8 chr3L:331973-332093 0.00023 72_[+5]_40 chr2R:23964749-23964869 0.00023 76_[+5]_36 chr3R:16850755-16850875 0.00023 107_[+5]_5 chr3R:18667794-18667914 0.00023 112_[+5] chrX:9686943-9687063 0.00023 105_[+5]_7 chr3L:12147121-12147241 0.00023 2_[+5]_110 chr3L:11708707-11708827 0.00027 20_[+5]_92 chrX:12654308-12654428 0.00028 83_[+5]_29 chr2L:15745617-15745737 0.00032 40_[+5]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTGTTTT width=8 seqs=41 chrX:19243525-19243645 ( 70) TTTGTTTT 1 chr2L:6644454-6644574 ( 57) TTTGTTTT 1 chr3L:19897489-19897609 ( 24) TTTGTTTT 1 chr2R:22136919-22137039 ( 57) TTTGTTTT 1 chr2L:18948859-18948979 ( 111) TTTGTTTT 1 chr2L:7782822-7782942 ( 100) TTTGTTTT 1 chr2R:7489890-7490010 ( 22) GTTGTTTT 1 chr3L:9509525-9509645 ( 37) TTCGTTTT 1 chrX:3780079-3780199 ( 9) GTTGTTTT 1 chr3R:24234066-24234186 ( 63) GTTGTTTT 1 chr3L:6189075-6189195 ( 91) GTTGTTTT 1 chr2L:922751-922871 ( 48) TTCGTTTT 1 chrX:5899391-5899511 ( 59) GTTGTTTT 1 chr3R:20897262-20897382 ( 5) TTCGTTTT 1 chr3R:23943179-23943299 ( 102) TTTGTTAT 1 chr2L:5325028-5325148 ( 3) TTTGTTAT 1 chr2R:23925148-23925268 ( 94) TTTGTTAT 1 chr3L:21023436-21023556 ( 43) TTTGTTAT 1 chr3R:6660080-6660200 ( 30) TTTGTTAT 1 chrX:19268811-19268931 ( 19) TTTTTTTT 1 chr2L:21251052-21251172 ( 35) TTTTTTTT 1 chr3R:10356356-10356476 ( 17) TTTGCTTT 1 chrX:6862557-6862677 ( 72) TTTTTTTT 1 chr2L:6089183-6089303 ( 58) TTTGCTTT 1 chr3R:22424800-22424920 ( 6) TTTTTTTT 1 chrX:7097260-7097380 ( 66) TTTGCTTT 1 chrX:16598798-16598918 ( 22) TTTGCTTT 1 chrX:3775970-3776090 ( 99) GTCGTTTT 1 chr2R:23744767-23744887 ( 96) TTCGTTAT 1 chr2R:9578008-9578128 ( 107) GTTGTTAT 1 chrX:10621567-10621687 ( 108) GTTGTTAT 1 chr3L:9430503-9430623 ( 105) TTCGTTAT 1 chr3L:331973-332093 ( 73) TTCGCTTT 1 chr2R:23964749-23964869 ( 77) TTCGCTTT 1 chr3R:16850755-16850875 ( 108) TTCTTTTT 1 chr3R:18667794-18667914 ( 113) GTTTTTTT 1 chrX:9686943-9687063 ( 106) GTTTTTTT 1 chr3L:12147121-12147241 ( 3) TTCGCTTT 1 chr3L:11708707-11708827 ( 21) TTTTTTAT 1 chrX:12654308-12654428 ( 84) TTTTCTTT 1 chr2L:15745617-15745737 ( 41) TTTGTTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3926 E= 9.2e+003 -1200 -1200 4 155 -1200 -1200 -1200 195 -1200 6 -1200 155 -1200 -1200 171 -24 -1200 -26 -1200 164 -1200 -1200 -1200 195 -14 -1200 -328 150 -1200 -1200 -1200 195 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 9.2e+003 0.000000 0.000000 0.243902 0.756098 0.000000 0.000000 0.000000 1.000000 0.000000 0.243902 0.000000 0.756098 0.000000 0.000000 0.780488 0.219512 0.000000 0.195122 0.000000 0.804878 0.000000 0.000000 0.000000 1.000000 0.243902 0.000000 0.024390 0.731707 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGTTTT MEME-5 regular expression -------------------------------------------------------------------------------- [TG]T[TC][GT]TT[TA]T -------------------------------------------------------------------------------- Time 31.38 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:123957-124077 5.95e-02 120 chrX:16598798-16598918 1.03e-02 61_[+2(1.31e-05)]_7_[+2(1.31e-05)]_\ 36 chr2L:8030271-8030391 1.93e-04 77_[+2(1.31e-05)]_35 chr3L:11765781-11765901 6.87e-03 78_[+2(5.25e-05)]_34 chr2L:20426012-20426132 1.38e-01 73_[+2(1.31e-05)]_39 chr3R:24038903-24039023 3.77e-01 120 chr2R:13189342-13189462 7.63e-04 75_[+1(5.81e-05)]_15_[+2(9.43e-05)]_\ 14 chr3L:14992104-14992224 6.60e-03 45_[+1(5.81e-05)]_67 chr3R:29457326-29457446 2.55e-03 53_[+2(1.31e-05)]_59 chrX:18806523-18806643 1.06e-05 86_[+4(1.48e-05)]_8_[+2(1.31e-05)]_\ 10 chr3L:5360135-5360255 1.02e-02 50_[+1(5.81e-05)]_62 chrX:1287019-1287139 2.90e-01 120 chr3R:5778863-5778983 2.32e-01 120 chr3R:9869178-9869298 8.31e-04 52_[+3(3.43e-05)]_15_[+3(6.67e-05)]_\ 12_[+2(4.06e-05)]_17 chr3L:8065687-8065807 1.22e-01 120 chr3L:3964084-3964204 1.75e-03 38_[+1(1.39e-05)]_74 chr2L:19054309-19054429 6.98e-04 37_[+4(2.76e-05)]_10_[+1(1.39e-05)]_\ 57 chr3R:31669996-31670116 2.04e-03 11_[+2(1.31e-05)]_101 chr2L:3656843-3656963 4.57e-01 120 chr3L:8576041-8576161 1.07e-02 10_[+2(9.43e-05)]_102 chr2L:9493988-9494108 1.18e-02 28_[+1(1.39e-05)]_41_[+4(8.86e-05)]_\ 35 chr3L:8576244-8576364 3.59e-01 120 chrX:19697022-19697142 1.96e-03 90_[+4(4.46e-05)]_22 chr3L:1637740-1637860 6.64e-03 78_[+1(2.85e-05)]_34 chr2L:16787710-16787830 8.47e-02 27_[+2(6.51e-05)]_85 chr3R:32015478-32015598 1.59e-04 104_[+2(1.31e-05)]_8 chrX:16599001-16599121 4.69e-01 120 chr3L:19896416-19896536 6.78e-04 90_[+1(5.81e-05)]_22 chr2L:9460175-9460295 7.79e-04 78_[+1(1.39e-05)]_3_[+4(1.48e-05)]_\ 23 chrX:7097260-7097380 1.11e-03 4_[+1(7.39e-05)]_7_[+4(4.46e-05)]_\ 93 chr2R:15890930-15891050 5.53e-04 52_[+1(1.39e-05)]_7_[+4(1.48e-05)]_\ 45 chr2R:7889453-7889573 8.83e-02 120 chr3L:12147121-12147241 5.87e-04 13_[+2(2.61e-05)]_99 chr3R:29723291-29723411 2.40e-01 52_[+1(7.39e-05)]_60 chr3R:22424800-22424920 7.42e-02 120 chr3R:30909189-30909309 4.27e-03 38_[+1(1.39e-05)]_38_[+1(1.39e-05)]_\ 28 chr3L:16182951-16183071 1.67e-01 120 chrX:9686943-9687063 3.92e-02 27_[+3(3.43e-05)]_85 chr2R:13183880-13184000 2.46e-01 120 chr3L:8060489-8060609 5.28e-03 80_[+4(4.46e-05)]_32 chr2R:11293106-11293226 1.29e-01 120 chr2L:7419990-7420110 4.15e-03 93_[+4(1.48e-05)]_19 chr2R:6236110-6236230 3.73e-03 25_[+4(4.46e-05)]_48_[+4(7.56e-05)]_\ 31 chr2R:10110809-10110929 2.31e-02 120 chr3R:29229337-29229457 2.26e-02 45_[+1(1.39e-05)]_67 chr3R:27905870-27905990 1.39e-03 34_[+2(4.06e-05)]_78 chrX:19718739-19718859 1.19e-03 99_[+2(1.31e-05)]_13 chr3R:18667794-18667914 2.17e-02 50_[+2(4.06e-05)]_62 chr3L:9430503-9430623 4.35e-05 68_[+1(1.39e-05)]_44 chrX:6698388-6698508 1.70e-02 120 chr2L:7782822-7782942 4.56e-04 22_[+1(2.85e-05)]_69_[+5(1.86e-05)]_\ 13 chr2L:3772864-3772984 2.10e-03 9_[+1(1.39e-05)]_33_[+4(4.46e-05)]_\ 62 chrX:13211633-13211753 4.15e-02 84_[+4(7.56e-05)]_28 chrX:531118-531238 1.34e-03 65_[+1(1.39e-05)]_20_[+1(1.39e-05)]_\ 19 chr2L:221278-221398 7.41e-05 8_[+2(9.43e-05)]_14_[+4(1.48e-05)]_\ 82 chrX:9686744-9686864 1.08e-04 79_[+1(1.39e-05)]_33 chr2R:5782725-5782845 1.58e-03 49_[+2(1.31e-05)]_63 chr2R:6648039-6648159 8.47e-02 120 chr3R:6660080-6660200 3.35e-02 29_[+5(7.19e-05)]_83 chr3R:5660585-5660705 3.07e-01 120 chr2L:6089183-6089303 7.44e-03 31_[+2(1.31e-05)]_81 chr2L:2677666-2677786 3.37e-01 39_[+2(9.43e-05)]_73 chr3L:21026241-21026361 3.66e-02 70_[+4(8.86e-05)]_42 chr3L:21023436-21023556 2.38e-03 42_[+5(7.19e-05)]_70 chrX:18812242-18812362 2.16e-01 106_[+1(7.39e-05)]_6 chrX:9684310-9684430 4.50e-03 120 chr3R:16284963-16285083 2.49e-01 39_[+2(7.94e-05)]_6_[+2(9.43e-05)]_\ 59 chr3R:5563596-5563716 3.65e-03 79_[+2(5.25e-05)]_33 chr2L:18485383-18485503 6.57e-03 45_[+4(2.76e-05)]_67 chr3R:19903266-19903386 1.41e-01 15_[+2(2.61e-05)]_97 chr3L:1891108-1891228 4.65e-01 120 chr2R:14427105-14427225 7.11e-02 120 chr3R:17606092-17606212 3.01e-02 78_[+2(1.31e-05)]_34 chr3R:29229135-29229255 5.67e-01 120 chr2R:16636252-16636372 4.42e-04 37_[+4(7.56e-05)]_43_[+1(1.39e-05)]_\ 24 chr3L:11708507-11708627 2.02e-02 63_[+3(8.30e-05)]_49 chrX:6862557-6862677 3.14e-02 20_[+2(4.06e-05)]_92 chr3L:11765092-11765212 3.21e-06 3_[+4(2.76e-05)]_41_[+1(1.39e-05)]_\ 44_[+2(2.61e-05)]_8 chr3R:17718856-17718976 5.87e-03 80_[+1(1.39e-05)]_32 chr3R:26261517-26261637 4.81e-02 120 chr2R:14174736-14174856 2.46e-03 10_[+3(3.43e-05)]_20_[+2(2.61e-05)]_\ 4_[+2(2.61e-05)]_11_[+2(1.31e-05)]_43 chr3L:21009010-21009130 8.20e-06 1_[+4(4.46e-05)]_23_[+1(5.81e-05)]_\ 1_[+4(4.46e-05)]_39_[+2(7.94e-05)]_24 chr2L:15248440-15248560 9.32e-01 120 chr2R:16638145-16638265 2.18e-03 23_[+2(7.94e-05)]_89 chr2R:10444069-10444189 2.45e-03 51_[+2(4.06e-05)]_28_[+2(1.31e-05)]_\ 25 chr2R:6632422-6632542 1.94e-04 13_[+1(5.81e-05)]_31_[+4(4.46e-05)]_\ 8_[+4(1.48e-05)]_44 chr3R:12997963-12998083 6.36e-01 120 chr3L:11708707-11708827 6.33e-01 120 chr2L:1118983-1119103 4.68e-03 87_[+4(8.86e-05)]_25 chr3R:20897262-20897382 4.91e-03 4_[+5(5.25e-05)]_21_[+2(7.94e-05)]_\ 56_[+2(2.61e-05)]_15 chrX:5899391-5899511 1.50e-02 50_[+2(5.25e-05)]_[+5(5.25e-05)]_54 chr2L:10298484-10298604 6.04e-01 120 chr3R:6534200-6534320 3.26e-01 120 chr3L:21014734-21014854 8.03e-02 22_[+2(6.51e-05)]_90 chr2R:8122927-8123047 2.18e-02 20_[+2(6.51e-05)]_92 chr2L:922751-922871 6.59e-04 16_[+1(7.39e-05)]_23_[+5(5.25e-05)]_\ 65 chrX:18812992-18813112 6.34e-01 120 chr3R:30912546-30912666 1.05e-01 120 chr3R:14818003-14818123 4.01e-04 68_[+2(5.25e-05)]_19_[+1(1.39e-05)]_\ 17 chrX:11713798-11713918 4.46e-02 120 chr2R:23925148-23925268 8.27e-04 93_[+5(7.19e-05)]_19 chr3R:19643071-19643191 1.35e-01 84_[+2(5.25e-05)]_28 chr3R:4821161-4821281 2.22e-02 40_[+3(1.59e-05)]_[+3(1.59e-05)]_64 chr3L:6189075-6189195 2.33e-05 64_[+1(1.39e-05)]_18_[+5(5.25e-05)]_\ 22 chr3R:24234066-24234186 9.67e-02 62_[+5(5.25e-05)]_50 chrX:9931007-9931127 3.04e-03 9_[+4(1.48e-05)]_52_[+1(2.85e-05)]_\ 43 chr3L:20221068-20221188 6.12e-02 120 chr3R:21446537-21446657 2.81e-01 120 chrX:9684854-9684974 2.31e-03 91_[+3(4.84e-05)]_21 chr3R:25982857-25982977 1.97e-01 120 chr2L:18948859-18948979 1.94e-02 110_[+5(1.86e-05)]_2 chrX:3780079-3780199 5.12e-02 8_[+5(5.25e-05)]_104 chr3R:17718527-17718647 3.35e-02 120 chr2R:10429926-10430046 6.36e-03 106_[+2(4.06e-05)]_6 chr2R:22136919-22137039 3.83e-05 3_[+4(1.48e-05)]_45_[+5(1.86e-05)]_\ 56 chrX:16683928-16684048 3.88e-02 43_[+2(4.06e-05)]_69 chr3R:21347809-21347929 1.03e-02 27_[+4(2.76e-05)]_85 chr2R:7989126-7989246 6.35e-06 36_[+3(1.59e-05)]_58_[+1(1.39e-05)]_\ 10 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chr3L:22835428-22835548 2.38e-02 120 chrX:19498111-19498231 4.63e-02 79_[+2(2.61e-05)]_33 chr2R:6242157-6242277 4.73e-04 67_[+1(2.85e-05)]_45 chr3R:15985926-15986046 4.76e-01 120 chr2L:6339277-6339397 2.22e-05 25_[+2(2.61e-05)]_4_[+3(1.59e-05)]_\ [+3(1.59e-05)]_15_[+1(5.81e-05)]_44 chr3L:16146683-16146803 8.18e-01 120 chr3L:17573962-17574082 4.74e-04 16_[+4(2.76e-05)]_34_[+3(1.59e-05)]_\ 54 chr2L:222269-222389 4.97e-01 120 chr2L:12172805-12172925 1.60e-01 120 chr3R:29869215-29869335 5.63e-02 120 chr2R:21183231-21183351 2.97e-01 120 chr2R:6605728-6605848 6.49e-06 22_[+1(1.39e-05)]_18_[+3(1.59e-05)]_\ 44_[+4(2.76e-05)]_12 chr3R:4811983-4812103 1.26e-01 120 chr3R:30209335-30209455 2.48e-02 120 chr2L:9494684-9494804 1.67e-01 61_[+2(7.94e-05)]_51 chrX:11709939-11710059 2.54e-01 120 chr3R:21156051-21156171 4.34e-01 120 chrX:3109058-3109178 3.83e-01 120 chrX:19243525-19243645 2.97e-04 69_[+5(1.86e-05)]_43 chr3L:21034451-21034571 2.32e-01 120 chr3L:21026442-21026562 4.01e-04 85_[+4(1.48e-05)]_6_[+4(4.46e-05)]_\ 13 chrX:12654308-12654428 3.39e-02 4_[+2(6.51e-05)]_108 chr2R:15371490-15371610 3.47e-01 120 chr3R:21111312-21111432 4.81e-01 120 chrX:21324032-21324152 5.66e-03 49_[+3(3.43e-05)]_4_[+3(3.43e-05)]_\ 51 chr2L:9330658-9330778 9.21e-04 32_[+1(5.81e-05)]_16_[+4(1.48e-05)]_\ 56 chr3R:11735479-11735599 5.89e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************