******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12104.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:1609786-1609906 1.0000 120 chr3L:1602760-1602880 1.0000 120 chr2R:22648749-22648869 1.0000 120 chr3R:16241946-16242066 1.0000 120 chr3R:16553638-16553758 1.0000 120 chr2L:7525448-7525568 1.0000 120 chr2L:1158311-1158431 1.0000 120 chr3R:16215061-16215181 1.0000 120 chrX:9106899-9107019 1.0000 120 chr3L:14776248-14776368 1.0000 120 chr2R:22420644-22420764 1.0000 120 chr3R:24817110-24817230 1.0000 120 chr3L:9505548-9505668 1.0000 120 chr3L:17404884-17405004 1.0000 120 chr2L:3805340-3805460 1.0000 120 chr3L:11486090-11486210 1.0000 120 chr2R:19125584-19125704 1.0000 120 chr3L:15275637-15275757 1.0000 120 chr3L:15988120-15988240 1.0000 120 chr3R:21188176-21188296 1.0000 120 chr2L:12549101-12549221 1.0000 120 chr3L:15532870-15532990 1.0000 120 chr3L:648234-648354 1.0000 120 chr3R:20310879-20310999 1.0000 120 chr2R:22387671-22387791 1.0000 120 chr3L:629419-629539 1.0000 120 chr3R:20560419-20560539 1.0000 120 chr2L:3779251-3779371 1.0000 120 chr3R:10681762-10681882 1.0000 120 chr3L:9468328-9468448 1.0000 120 chr2R:7490082-7490202 1.0000 120 chr2L:8010987-8011107 1.0000 120 chr3L:14847474-14847594 1.0000 120 chr3L:7510867-7510987 1.0000 120 chr2R:13438418-13438538 1.0000 120 chr2L:18878586-18878706 1.0000 120 chr3R:24318512-24318632 1.0000 120 chrX:7968385-7968505 1.0000 120 chr3R:21186990-21187110 1.0000 120 chr3R:10567068-10567188 1.0000 120 chr2R:15322361-15322481 1.0000 120 chr3L:16870894-16871014 1.0000 120 chrX:21322764-21322884 1.0000 120 chrX:13820727-13820847 1.0000 120 chr3R:19093286-19093406 1.0000 120 chr3L:15591229-15591349 1.0000 120 chrX:13320791-13320911 1.0000 120 chr3L:11336652-11336772 1.0000 120 chr2R:13015272-13015392 1.0000 120 chrX:10363262-10363382 1.0000 120 chr3L:20710605-20710725 1.0000 120 chrX:10325035-10325155 1.0000 120 chr3R:20829531-20829651 1.0000 120 chrX:10363015-10363135 1.0000 120 chr2R:9684133-9684253 1.0000 120 chr3L:20809484-20809604 1.0000 120 chr3R:17540206-17540326 1.0000 120 chr3L:15171921-15172041 1.0000 120 chr3R:11663664-11663784 1.0000 120 chr3L:8448564-8448684 1.0000 120 chrX:17473429-17473549 1.0000 120 chr3L:10849719-10849839 1.0000 120 chr2R:17469501-17469621 1.0000 120 chrX:11441012-11441132 1.0000 120 chr2R:13507322-13507442 1.0000 120 chrX:2790209-2790329 1.0000 120 chr2R:16270770-16270890 1.0000 120 chr3L:20731020-20731140 1.0000 120 chr2R:9388683-9388803 1.0000 120 chr2L:7158962-7159082 1.0000 120 chr3R:13804014-13804134 1.0000 120 chr3L:21056339-21056459 1.0000 120 chr3R:7892500-7892620 1.0000 120 chr2R:10160253-10160373 1.0000 120 chr3L:14781812-14781932 1.0000 120 chr2L:9618017-9618137 1.0000 120 chr3R:5861363-5861483 1.0000 120 chr3R:21156289-21156409 1.0000 120 chr3R:15670623-15670743 1.0000 120 chrX:20507827-20507947 1.0000 120 chr3L:17791627-17791747 1.0000 120 chr3R:17394875-17394995 1.0000 120 chr2R:11970374-11970494 1.0000 120 chr2L:5520080-5520200 1.0000 120 chr3L:6495443-6495563 1.0000 120 chr3L:6743455-6743575 1.0000 120 chr3L:4254586-4254706 1.0000 120 chr3R:17385395-17385515 1.0000 120 chr2L:20390122-20390242 1.0000 120 chr3L:18030087-18030207 1.0000 120 chrX:14583380-14583500 1.0000 120 chrX:14634841-14634961 1.0000 120 chr3L:16129308-16129428 1.0000 120 chr2R:7879107-7879227 1.0000 120 chrX:16385913-16386033 1.0000 120 chrX:19166356-19166476 1.0000 120 chr3L:1742639-1742759 1.0000 120 chr3R:16655922-16656042 1.0000 120 chr2L:16743200-16743320 1.0000 120 chrX:19225059-19225179 1.0000 120 chr2R:11175633-11175753 1.0000 120 chr3L:16386077-16386197 1.0000 120 chrX:2011747-2011867 1.0000 120 chr3L:15693170-15693290 1.0000 120 chr2R:16581729-16581849 1.0000 120 chr3L:8951231-8951351 1.0000 120 chr3L:17003656-17003776 1.0000 120 chr3L:20784867-20784987 1.0000 120 chr3L:13923440-13923560 1.0000 120 chr3R:23346882-23347002 1.0000 120 chrX:11885499-11885619 1.0000 120 chrX:9202204-9202324 1.0000 120 chr3R:16213044-16213164 1.0000 120 chr3L:6174021-6174141 1.0000 120 chr2R:16660201-16660321 1.0000 120 chrX:20631210-20631330 1.0000 120 chr3R:6368751-6368871 1.0000 120 chr3R:9344911-9345031 1.0000 120 chr2R:24139269-24139389 1.0000 120 chr2R:21017427-21017547 1.0000 120 chr3R:9237885-9238005 1.0000 120 chr2L:20757906-20758026 1.0000 120 chr2R:21018419-21018539 1.0000 120 chr3L:10350838-10350958 1.0000 120 chr2L:3507581-3507701 1.0000 120 chrX:18525058-18525178 1.0000 120 chr3L:627836-627956 1.0000 120 chr3L:19016575-19016695 1.0000 120 chr3L:630267-630387 1.0000 120 chr2R:15381262-15381382 1.0000 120 chr3L:10868187-10868307 1.0000 120 chr4:1054002-1054122 1.0000 120 chr3R:5685713-5685833 1.0000 120 chr3L:22277378-22277498 1.0000 120 chr3R:12406342-12406462 1.0000 120 chr2R:13482310-13482430 1.0000 120 chr3R:26014372-26014492 1.0000 120 chr3R:4732158-4732278 1.0000 120 chr3L:8024914-8025034 1.0000 120 chr3R:14656903-14657023 1.0000 120 chr2R:24293522-24293642 1.0000 120 chr3R:27946747-27946867 1.0000 120 chr3R:10048151-10048271 1.0000 120 chr3R:25275470-25275590 1.0000 120 chr2L:20915377-20915497 1.0000 120 chr3L:14956397-14956517 1.0000 120 chr3L:3786965-3787085 1.0000 120 chr2R:7077028-7077148 1.0000 120 chr3L:12350470-12350590 1.0000 120 chr3R:27938133-27938253 1.0000 120 chrX:17696872-17696992 1.0000 120 chr3R:29772371-29772491 1.0000 120 chrX:12699220-12699340 1.0000 120 chr3R:14875668-14875788 1.0000 120 chr2R:12174490-12174610 1.0000 120 chr3L:20471132-20471252 1.0000 120 chr2R:10681342-10681462 1.0000 120 chr3R:27153542-27153662 1.0000 120 chr3L:18997277-18997397 1.0000 120 chr2R:9309638-9309758 1.0000 120 chr3R:24817324-24817444 1.0000 120 chr3L:13922476-13922596 1.0000 120 chr3R:22367305-22367425 1.0000 120 chrX:2061269-2061389 1.0000 120 chr3R:21837066-21837186 1.0000 120 chr3R:29799520-29799640 1.0000 120 chr3L:11534160-11534280 1.0000 120 chrX:6592177-6592297 1.0000 120 chr2L:14021207-14021327 1.0000 120 chrX:20503344-20503464 1.0000 120 chrX:17738007-17738127 1.0000 120 chr2R:18774961-18775081 1.0000 120 chr2L:20807717-20807837 1.0000 120 chr3R:6791307-6791427 1.0000 120 chr3R:5660244-5660364 1.0000 120 chr2L:6283457-6283577 1.0000 120 chr2L:8083250-8083370 1.0000 120 chr2L:871615-871735 1.0000 120 chr3L:15094757-15094877 1.0000 120 chr3R:10520692-10520812 1.0000 120 chr3L:16574567-16574687 1.0000 120 chr3R:24010936-24011056 1.0000 120 chr2R:12035175-12035295 1.0000 120 chrX:12470688-12470808 1.0000 120 chr3R:29831062-29831182 1.0000 120 chr3R:25123348-25123468 1.0000 120 chrX:12595685-12595805 1.0000 120 chr3R:27988805-27988925 1.0000 120 chr3R:29869222-29869342 1.0000 120 chr3L:18786889-18787009 1.0000 120 chr3L:6981905-6982025 1.0000 120 chr2R:16178621-16178741 1.0000 120 chr3R:23356217-23356337 1.0000 120 chr2R:13429149-13429269 1.0000 120 chr3R:21112534-21112654 1.0000 120 chr2R:21323871-21323991 1.0000 120 chr3L:18242249-18242369 1.0000 120 chr3L:6969340-6969460 1.0000 120 chr2L:7395981-7396101 1.0000 120 chrX:7728466-7728586 1.0000 120 chrX:16854884-16855004 1.0000 120 chr3R:12980829-12980949 1.0000 120 chr2L:16476545-16476665 1.0000 120 chr3R:14062004-14062124 1.0000 120 chrX:7553504-7553624 1.0000 120 chr2R:11602036-11602156 1.0000 120 chr3L:13479963-13480083 1.0000 120 chrX:10745100-10745220 1.0000 120 chr3R:18197651-18197771 1.0000 120 chr2R:18397631-18397751 1.0000 120 chr3L:19166706-19166826 1.0000 120 chrX:12463048-12463168 1.0000 120 chr2L:20097266-20097386 1.0000 120 chr3L:14031722-14031842 1.0000 120 chrX:15063777-15063897 1.0000 120 chr3L:12803755-12803875 1.0000 120 chrX:18900034-18900154 1.0000 120 chr2L:5981408-5981528 1.0000 120 chr2L:17588717-17588837 1.0000 120 chrX:16944149-16944269 1.0000 120 chr3R:12426103-12426223 1.0000 120 chr3R:20588514-20588634 1.0000 120 chr2R:16110085-16110205 1.0000 120 chr2L:5326809-5326929 1.0000 120 chr3L:3543799-3543919 1.0000 120 chr3L:6157786-6157906 1.0000 120 chr3R:19031305-19031425 1.0000 120 chrX:15297257-15297377 1.0000 120 chr3L:20771287-20771407 1.0000 120 chr2L:10522636-10522756 1.0000 120 chr2R:15371490-15371610 1.0000 120 chr3R:28599600-28599720 1.0000 120 chrX:7617043-7617163 1.0000 120 chr3R:16157712-16157832 1.0000 120 chr3R:13033255-13033375 1.0000 120 chr3L:13356205-13356325 1.0000 120 chrX:3357847-3357967 1.0000 120 chr3L:14195901-14196021 1.0000 120 chr3R:5470724-5470844 1.0000 120 chr2R:18609065-18609185 1.0000 120 chr2R:21017648-21017768 1.0000 120 chr2R:13990775-13990895 1.0000 120 chr3R:16837898-16838018 1.0000 120 chr2L:11528338-11528458 1.0000 120 chr3L:3903044-3903164 1.0000 120 chr3L:2489572-2489692 1.0000 120 chr3L:19834340-19834460 1.0000 120 chr3R:26013007-26013127 1.0000 120 chr3R:25281226-25281346 1.0000 120 chr3R:18242489-18242609 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG12104/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12104.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.342 C 0.152 G 0.159 T 0.347 Background letter frequencies (from file dataset with add-one prior applied): A 0.342 C 0.152 G 0.159 T 0.347 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCKGKGGC MEME-1 width = 8 sites = 20 llr = 200 E-value = 4.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCKGKGGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::1:1: pos.-specific C 1a:3::1a probability G 9:77689: matrix T 1:4143:: bits 2.7 * * 2.4 * * 2.2 * * 1.9 ** ** Relative 1.6 ** * *** Entropy 1.4 **** *** (14.5 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGGGGGC consensus TCTT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGKGGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6592177-6592297 42 3.73e-07 TGAATGGGTG GCGGGGGC GGGGGGGTAT chr3L:17003656-17003776 14 3.73e-07 CTGGGGGGTA GCGGGGGC GGGGCACTCG chr2R:16270770-16270890 73 3.73e-07 TGGAAGTGGA GCGGGGGC TACCGTCAAT chr3R:10567068-10567188 34 1.54e-06 AGATAAGGCA GCGGTGGC GCGCAATTGT chr2L:871615-871735 61 3.17e-06 TGAGGTGCCT GCGGGTGC TTTTGGACAA chr3L:14031722-14031842 35 6.51e-06 GCTTCGAGTA GCTGTGGC TCAAACCATT chrX:16385913-16386033 33 6.51e-06 AATAAACACA GCTGTGGC TAAAATATTA chr3L:11336652-11336772 109 9.62e-06 GCGCAGGGGA TCGGGGGC ATGG chr3L:629419-629539 69 9.62e-06 CTACGAGGGG GCGGGGAC CAGACCAGAG chr3L:13356205-13356325 86 1.22e-05 TAACTATTTG GCGGTTGC ATAAAGCGGT chr3R:5660244-5660364 38 1.22e-05 TGTGTAACTA GCGGAGGC AAAGTACATT chr3R:10681762-10681882 61 1.48e-05 TGCCGTCTGT GCGTGGGC CGTTATTCGT chrX:19166356-19166476 59 1.65e-05 TAATGCAACT GCTCTGGC TTTCTTCTGT chr3L:12350470-12350590 100 1.72e-05 ACACTGAACT CCGCGGGC TACTTGTCTT chr3R:29869222-29869342 40 1.87e-05 TTTAAAATAC GCGCGGAC TCTCGCCGCA chr2R:16178621-16178741 8 2.78e-05 TCACACT GCGCTTGC ATGGAAGTAG chrX:20507827-20507947 54 2.78e-05 GAGAGAAAGG GCTGGGCC ACTTTACTTC chr3L:14195901-14196021 48 3.31e-05 GTATTGTTTA TCTGGGGC GTTTACTTTG chr3R:13033255-13033375 68 3.31e-05 ATAACCAGTT GCTCGTGC GCCCGGCATT chr2R:13482310-13482430 84 3.87e-05 GTGTAAGCTA GCTGTTGC TTATGTTGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGKGGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6592177-6592297 3.7e-07 41_[+1]_71 chr3L:17003656-17003776 3.7e-07 13_[+1]_99 chr2R:16270770-16270890 3.7e-07 72_[+1]_40 chr3R:10567068-10567188 1.5e-06 33_[+1]_79 chr2L:871615-871735 3.2e-06 60_[+1]_52 chr3L:14031722-14031842 6.5e-06 34_[+1]_78 chrX:16385913-16386033 6.5e-06 32_[+1]_80 chr3L:11336652-11336772 9.6e-06 108_[+1]_4 chr3L:629419-629539 9.6e-06 68_[+1]_44 chr3L:13356205-13356325 1.2e-05 85_[+1]_27 chr3R:5660244-5660364 1.2e-05 37_[+1]_75 chr3R:10681762-10681882 1.5e-05 60_[+1]_52 chrX:19166356-19166476 1.6e-05 58_[+1]_54 chr3L:12350470-12350590 1.7e-05 99_[+1]_13 chr3R:29869222-29869342 1.9e-05 39_[+1]_73 chr2R:16178621-16178741 2.8e-05 7_[+1]_105 chrX:20507827-20507947 2.8e-05 53_[+1]_59 chr3L:14195901-14196021 3.3e-05 47_[+1]_65 chr3R:13033255-13033375 3.3e-05 67_[+1]_45 chr2R:13482310-13482430 3.9e-05 83_[+1]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGKGGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCKGKGGC width=8 seqs=20 chrX:6592177-6592297 ( 42) GCGGGGGC 1 chr3L:17003656-17003776 ( 14) GCGGGGGC 1 chr2R:16270770-16270890 ( 73) GCGGGGGC 1 chr3R:10567068-10567188 ( 34) GCGGTGGC 1 chr2L:871615-871735 ( 61) GCGGGTGC 1 chr3L:14031722-14031842 ( 35) GCTGTGGC 1 chrX:16385913-16386033 ( 33) GCTGTGGC 1 chr3L:11336652-11336772 ( 109) TCGGGGGC 1 chr3L:629419-629539 ( 69) GCGGGGAC 1 chr3L:13356205-13356325 ( 86) GCGGTTGC 1 chr3R:5660244-5660364 ( 38) GCGGAGGC 1 chr3R:10681762-10681882 ( 61) GCGTGGGC 1 chrX:19166356-19166476 ( 59) GCTCTGGC 1 chr3L:12350470-12350590 ( 100) CCGCGGGC 1 chr3R:29869222-29869342 ( 40) GCGCGGAC 1 chr2R:16178621-16178741 ( 8) GCGCTTGC 1 chrX:20507827-20507947 ( 54) GCTGGGCC 1 chr3L:14195901-14196021 ( 48) TCTGGGGC 1 chr3R:13033255-13033375 ( 68) GCTCGTGC 1 chr2R:13482310-13482430 ( 84) GCTGTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGKGGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9376 E= 4.4e-003 -1097 -161 242 -179 -1097 271 -1097 -1097 -1097 -1097 203 1 -1097 71 214 -279 -277 -1097 192 1 -1097 -1097 224 -47 -177 -161 242 -1097 -1097 271 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGKGGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 4.4e-003 0.000000 0.050000 0.850000 0.100000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.650000 0.350000 0.000000 0.250000 0.700000 0.050000 0.050000 0.000000 0.600000 0.350000 0.000000 0.000000 0.750000 0.250000 0.100000 0.050000 0.850000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGKGGC MEME-1 regular expression -------------------------------------------------------------------------------- GC[GT][GC][GT][GT]GC -------------------------------------------------------------------------------- Time 9.49 secs. ******************************************************************************** ******************************************************************************** MOTIF SCCMGCCA MEME-2 width = 8 sites = 15 llr = 154 E-value = 2.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCCMGCCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::51::a pos.-specific C 4a95299: probability G 6:1:711: matrix T :::::::: bits 2.7 * 2.4 * 2.2 ** ** 1.9 ** ** Relative 1.6 *** *** Entropy 1.4 *** **** (14.8 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCCGCCA consensus C AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCMGCCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:15322361-15322481 47 1.37e-06 ATCACGATAT CCCCGCCA GTCACCGTTT chr3R:10681762-10681882 85 1.37e-06 TCGTTTGTTT CCCCGCCA GACTTTTGTA chr3R:7892500-7892620 58 2.95e-06 ACGAAAGCCA GCCAGCCA GCTATCTACT chrX:11885499-11885619 3 3.62e-06 AT GCCCCCCA AGAATATACA chr3L:1742639-1742759 56 3.62e-06 TGGGAATCAA GCCCCCCA ACGGGCCAAG chrX:20507827-20507947 24 5.13e-06 TTCCCAGGCC CCCAGCCA CGTCCCTACA chr3R:13033255-13033375 76 7.97e-06 TTGCTCGTGC GCCCGGCA TTTGATAGTG chr2R:13429149-13429269 36 9.48e-06 TAGAGAAAAT GCCACCCA CTTCCGTTTT chr3L:15988120-15988240 91 1.16e-05 TTGCGAAATT CCCCGCGA TAGTGTTGGA chr3L:1609786-1609906 82 1.16e-05 TATTCGACAG CCCCGCGA CAACAACAGA chrX:2061269-2061389 36 1.45e-05 ATTTGTTAGT GCCCACCA AAAGGAAGAC chr3R:25281226-25281346 35 2.09e-05 TTTAGCATTT GCGAGCCA GGTTAATTAC chr3L:17003656-17003776 74 2.09e-05 CAAAACAAAA GCGAGCCA CAGCCAAACA chr3L:15591229-15591349 108 2.09e-05 CCTTAGATGT GCCAGGCA ATTTA chrX:6592177-6592297 107 3.87e-05 TTGTTTACAC CCCAACCA ACCACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCMGCCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15322361-15322481 1.4e-06 46_[+2]_66 chr3R:10681762-10681882 1.4e-06 84_[+2]_28 chr3R:7892500-7892620 3e-06 57_[+2]_55 chrX:11885499-11885619 3.6e-06 2_[+2]_110 chr3L:1742639-1742759 3.6e-06 55_[+2]_57 chrX:20507827-20507947 5.1e-06 23_[+2]_89 chr3R:13033255-13033375 8e-06 75_[+2]_37 chr2R:13429149-13429269 9.5e-06 35_[+2]_77 chr3L:15988120-15988240 1.2e-05 90_[+2]_22 chr3L:1609786-1609906 1.2e-05 81_[+2]_31 chrX:2061269-2061389 1.5e-05 35_[+2]_77 chr3R:25281226-25281346 2.1e-05 34_[+2]_78 chr3L:17003656-17003776 2.1e-05 73_[+2]_39 chr3L:15591229-15591349 2.1e-05 107_[+2]_5 chrX:6592177-6592297 3.9e-05 106_[+2]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCMGCCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCCMGCCA width=8 seqs=15 chr2R:15322361-15322481 ( 47) CCCCGCCA 1 chr3R:10681762-10681882 ( 85) CCCCGCCA 1 chr3R:7892500-7892620 ( 58) GCCAGCCA 1 chrX:11885499-11885619 ( 3) GCCCCCCA 1 chr3L:1742639-1742759 ( 56) GCCCCCCA 1 chrX:20507827-20507947 ( 24) CCCAGCCA 1 chr3R:13033255-13033375 ( 76) GCCCGGCA 1 chr2R:13429149-13429269 ( 36) GCCACCCA 1 chr3L:15988120-15988240 ( 91) CCCCGCGA 1 chr3L:1609786-1609906 ( 82) CCCCGCGA 1 chrX:2061269-2061389 ( 36) GCCCACCA 1 chr3R:25281226-25281346 ( 35) GCGAGCCA 1 chr3L:17003656-17003776 ( 74) GCGAGCCA 1 chr3L:15591229-15591349 ( 108) GCCAGGCA 1 chrX:6592177-6592297 ( 107) CCCAACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCMGCCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 2.3e+000 -1055 139 192 -1055 -1055 271 -1055 -1055 -1055 251 -25 -1055 45 181 -1055 -1055 -136 39 207 -1055 -1055 251 -25 -1055 -1055 251 -25 -1055 155 -1055 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCMGCCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 2.3e+000 0.000000 0.400000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.866667 0.133333 0.000000 0.466667 0.533333 0.000000 0.000000 0.133333 0.200000 0.666667 0.000000 0.000000 0.866667 0.133333 0.000000 0.000000 0.866667 0.133333 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCCMGCCA MEME-2 regular expression -------------------------------------------------------------------------------- [GC]CC[CA][GC]CCA -------------------------------------------------------------------------------- Time 15.81 secs. ******************************************************************************** ******************************************************************************** MOTIF RCCAHSCS MEME-3 width = 8 sites = 13 llr = 129 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif RCCAHSCS MEME-3 Description -------------------------------------------------------------------------------- Simplified A 4::a3::: pos.-specific C :9a:45a5 probability G 61:::5:5 matrix T ::::3::: bits 2.7 * * 2.4 ** * 2.2 ** * 1.9 ** * Relative 1.6 *** *** Entropy 1.4 **** *** (14.3 bits) 1.1 **** *** 0.8 **** *** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCACGCG consensus A AC C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCAHSCS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13507322-13507442 29 2.81e-06 ACAAGGGGCT GCCACCCC TTTCAATGTT chr3L:15693170-15693290 4 6.13e-06 TAA GCCATGCG TTTCTGCTCG chr3L:1742639-1742759 68 6.13e-06 CCCCCAACGG GCCAAGCG AGTACAAAGT chr3L:15171921-15172041 56 6.13e-06 GACCCATTTT GCCAAGCG TGTTCTACAA chr3R:29831062-29831182 33 1.25e-05 ACTTTTGTTT GCCATCCG CGTCTCTGTA chrX:10325035-10325155 24 1.25e-05 TATTTTTAGA GCCAAGCC TACACTTATG chr3R:12426103-12426223 99 1.71e-05 GGGGACACTA GCCATCCC GCTTGCACTC chr2L:6283457-6283577 66 2.01e-05 GTGTGGGAGA ACCACGCC CTTTGCCGCC chr3L:16870894-16871014 33 2.01e-05 AGAAACATGA ACCACCCG TGGGAAGTGC chr3L:648234-648354 85 2.16e-05 CTATTTTTTT ACCACCCC TATTCGCGTC chr3L:627836-627956 45 2.87e-05 AAAACCGCAA ACCATGCG ATAAATAGTT chr2L:18878586-18878706 81 2.87e-05 TCGCCTCGGA ACCAAGCG AACTAACAAA chr2L:5981408-5981528 106 5.19e-05 AGCGAAGTCA GGCACCCC AGCTCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCAHSCS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13507322-13507442 2.8e-06 28_[+3]_84 chr3L:15693170-15693290 6.1e-06 3_[+3]_109 chr3L:1742639-1742759 6.1e-06 67_[+3]_45 chr3L:15171921-15172041 6.1e-06 55_[+3]_57 chr3R:29831062-29831182 1.2e-05 32_[+3]_80 chrX:10325035-10325155 1.2e-05 23_[+3]_89 chr3R:12426103-12426223 1.7e-05 98_[+3]_14 chr2L:6283457-6283577 2e-05 65_[+3]_47 chr3L:16870894-16871014 2e-05 32_[+3]_80 chr3L:648234-648354 2.2e-05 84_[+3]_28 chr3L:627836-627956 2.9e-05 44_[+3]_68 chr2L:18878586-18878706 2.9e-05 80_[+3]_32 chr2L:5981408-5981528 5.2e-05 105_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCAHSCS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RCCAHSCS width=8 seqs=13 chr2R:13507322-13507442 ( 29) GCCACCCC 1 chr3L:15693170-15693290 ( 4) GCCATGCG 1 chr3L:1742639-1742759 ( 68) GCCAAGCG 1 chr3L:15171921-15172041 ( 56) GCCAAGCG 1 chr3R:29831062-29831182 ( 33) GCCATCCG 1 chrX:10325035-10325155 ( 24) GCCAAGCC 1 chr3R:12426103-12426223 ( 99) GCCATCCC 1 chr2L:6283457-6283577 ( 66) ACCACGCC 1 chr3L:16870894-16871014 ( 33) ACCACCCG 1 chr3L:648234-648354 ( 85) ACCACCCC 1 chr3L:627836-627956 ( 45) ACCATGCG 1 chr2L:18878586-18878706 ( 81) ACCAAGCG 1 chr2L:5981408-5981528 ( 106) GGCACCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCAHSCS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 1.0e+004 17 -1035 195 -1035 -1035 260 -105 -1035 -1035 271 -1035 -1035 155 -1035 -1035 -1035 -15 133 -1035 -17 -1035 160 176 -1035 -1035 271 -1035 -1035 -1035 160 176 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCAHSCS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.0e+004 0.384615 0.000000 0.615385 0.000000 0.000000 0.923077 0.076923 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.307692 0.384615 0.000000 0.307692 0.000000 0.461538 0.538462 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.461538 0.538462 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RCCAHSCS MEME-3 regular expression -------------------------------------------------------------------------------- [GA]CCA[CAT][GC]C[GC] -------------------------------------------------------------------------------- Time 22.00 secs. ******************************************************************************** ******************************************************************************** MOTIF CSCAKCGS MEME-4 width = 8 sites = 8 llr = 88 E-value = 9.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSCAKCGS MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::8:::: pos.-specific C a4a3:9:4 probability G :6::51a6 matrix T ::::5::: bits 2.7 * * * 2.4 * * * 2.2 * * ** 1.9 * * ** Relative 1.6 *** *** Entropy 1.4 *** *** (15.8 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCAGCGG consensus C CT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCAKCGS MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:21156289-21156409 107 7.68e-07 TTGGTGAAAA CGCAGCGG ATTACG chrX:17738007-17738127 49 1.11e-06 TGTTCTTTTT CGCCGCGG TAGCTATCAT chrX:10363262-10363382 102 5.61e-06 TCTCTGTGTA CCCAGCGC CGTGCATTTG chr2L:18878586-18878706 72 6.35e-06 AAACAAAACT CGCCTCGG AACCAAGCGA chrX:15063777-15063897 89 9.86e-06 AAAACGCCGA CGCATCGC GAACTGGCAA chr2R:12035175-12035295 32 9.86e-06 TCCAATCTTT CCCATCGG TCCAAATCTA chr3R:29869222-29869342 91 1.28e-05 CGACCAATAG CCCATCGC TAGTTCAATC chr3L:11336652-11336772 100 1.43e-05 CCGTGAGAGG CGCAGGGG ATCGGGGGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCAKCGS MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:21156289-21156409 7.7e-07 106_[+4]_6 chrX:17738007-17738127 1.1e-06 48_[+4]_64 chrX:10363262-10363382 5.6e-06 101_[+4]_11 chr2L:18878586-18878706 6.4e-06 71_[+4]_41 chrX:15063777-15063897 9.9e-06 88_[+4]_24 chr2R:12035175-12035295 9.9e-06 31_[+4]_81 chr3R:29869222-29869342 1.3e-05 90_[+4]_22 chr3L:11336652-11336772 1.4e-05 99_[+4]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCAKCGS MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSCAKCGS width=8 seqs=8 chr3R:21156289-21156409 ( 107) CGCAGCGG 1 chrX:17738007-17738127 ( 49) CGCCGCGG 1 chrX:10363262-10363382 ( 102) CCCAGCGC 1 chr2L:18878586-18878706 ( 72) CGCCTCGG 1 chrX:15063777-15063897 ( 89) CGCATCGC 1 chr2R:12035175-12035295 ( 32) CCCATCGG 1 chr3R:29869222-29869342 ( 91) CCCATCGC 1 chr3L:11336652-11336772 ( 100) CGCAGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCAKCGS MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.1077 E= 9.4e+003 -965 271 -965 -965 -965 130 197 -965 -965 271 -965 -965 113 71 -965 -965 -965 -965 165 53 -965 252 -35 -965 -965 -965 265 -965 -965 130 197 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCAKCGS MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 9.4e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.375000 0.625000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.375000 0.625000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCAKCGS MEME-4 regular expression -------------------------------------------------------------------------------- C[GC]C[AC][GT]CG[GC] -------------------------------------------------------------------------------- Time 28.20 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCTGCMC MEME-5 width = 8 sites = 6 llr = 68 E-value = 2.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCTGCMC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::32 pos.-specific C 8:a::858 probability G 2a::a22: matrix T :::a:::: bits 2.7 ** * 2.4 ** * 2.2 *** ** 1.9 *** ** * Relative 1.6 ****** * Entropy 1.4 ****** * (16.4 bits) 1.1 ****** * 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCTGCCC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTGCMC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:24293522-24293642 28 7.12e-07 AGCTAAGCGA CGCTGCCC TATGTTAATT chrX:2061269-2061389 73 3.06e-06 AAATGGCTGA CGCTGCAC TTCCGCTTTC chr3R:14656903-14657023 12 3.06e-06 CGTTATCGAA CGCTGCAC AGCTGGTCAT chr2L:20097266-20097386 96 4.55e-06 ACTATCTAAA GGCTGCCC ATGCTAGAAA chrX:10745100-10745220 93 6.15e-06 GAAGCTAATT CGCTGCCA TATTTTAAAG chr3L:14956397-14956517 58 7.71e-06 AAGGGTTTCT CGCTGGGC AAATAGAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTGCMC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24293522-24293642 7.1e-07 27_[+5]_85 chrX:2061269-2061389 3.1e-06 72_[+5]_40 chr3R:14656903-14657023 3.1e-06 11_[+5]_101 chr2L:20097266-20097386 4.5e-06 95_[+5]_17 chrX:10745100-10745220 6.1e-06 92_[+5]_20 chr3L:14956397-14956517 7.7e-06 57_[+5]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTGCMC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCTGCMC width=8 seqs=6 chr2R:24293522-24293642 ( 28) CGCTGCCC 1 chrX:2061269-2061389 ( 73) CGCTGCAC 1 chr3R:14656903-14657023 ( 12) CGCTGCAC 1 chr2L:20097266-20097386 ( 96) GGCTGCCC 1 chrX:10745100-10745220 ( 93) CGCTGCCA 1 chr3L:14956397-14956517 ( 58) CGCTGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTGCMC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.3004 E= 2.6e+004 -923 245 7 -923 -923 -923 265 -923 -923 271 -923 -923 -923 -923 -923 153 -923 -923 265 -923 -923 245 7 -923 -4 171 7 -923 -103 245 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTGCMC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 2.6e+004 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.333333 0.500000 0.166667 0.000000 0.166667 0.833333 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCTGCMC MEME-5 regular expression -------------------------------------------------------------------------------- CGCTGC[CA]C -------------------------------------------------------------------------------- Time 34.40 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1609786-1609906 9.30e-05 81_[+2(1.16e-05)]_31 chr3L:1602760-1602880 9.35e-01 120 chr2R:22648749-22648869 8.91e-01 120 chr3R:16241946-16242066 9.11e-01 120 chr3R:16553638-16553758 9.01e-01 120 chr2L:7525448-7525568 1.40e-01 120 chr2L:1158311-1158431 2.58e-01 120 chr3R:16215061-16215181 9.98e-01 120 chrX:9106899-9107019 1.30e-01 120 chr3L:14776248-14776368 6.90e-01 120 chr2R:22420644-22420764 7.68e-01 120 chr3R:24817110-24817230 9.51e-01 120 chr3L:9505548-9505668 5.02e-01 120 chr3L:17404884-17405004 5.80e-01 120 chr2L:3805340-3805460 9.17e-01 120 chr3L:11486090-11486210 5.02e-01 120 chr2R:19125584-19125704 2.51e-01 120 chr3L:15275637-15275757 9.42e-01 120 chr3L:15988120-15988240 2.56e-04 90_[+2(1.16e-05)]_22 chr3R:21188176-21188296 4.51e-01 120 chr2L:12549101-12549221 4.09e-01 120 chr3L:15532870-15532990 3.62e-01 120 chr3L:648234-648354 3.53e-02 84_[+3(2.16e-05)]_28 chr3R:20310879-20310999 8.34e-01 120 chr2R:22387671-22387791 8.39e-01 120 chr3L:629419-629539 1.03e-04 68_[+1(9.62e-06)]_44 chr3R:20560419-20560539 4.67e-01 120 chr2L:3779251-3779371 8.78e-01 120 chr3R:10681762-10681882 9.85e-06 60_[+1(1.48e-05)]_16_[+2(1.37e-06)]_\ 28 chr3L:9468328-9468448 3.23e-01 120 chr2R:7490082-7490202 7.92e-01 120 chr2L:8010987-8011107 5.77e-01 120 chr3L:14847474-14847594 6.44e-01 120 chr3L:7510867-7510987 8.35e-01 120 chr2R:13438418-13438538 4.55e-01 120 chr2L:18878586-18878706 1.70e-05 71_[+4(6.35e-06)]_1_[+3(2.87e-05)]_\ 32 chr3R:24318512-24318632 6.64e-02 120 chrX:7968385-7968505 3.13e-01 120 chr3R:21186990-21187110 3.30e-02 120 chr3R:10567068-10567188 5.95e-05 33_[+1(1.54e-06)]_79 chr2R:15322361-15322481 2.35e-03 46_[+2(1.37e-06)]_66 chr3L:16870894-16871014 6.44e-03 32_[+3(2.01e-05)]_80 chrX:21322764-21322884 9.97e-01 120 chrX:13820727-13820847 8.79e-01 120 chr3R:19093286-19093406 9.68e-01 120 chr3L:15591229-15591349 9.15e-03 107_[+2(2.09e-05)]_5 chrX:13320791-13320911 9.83e-01 120 chr3L:11336652-11336772 4.80e-05 99_[+4(1.43e-05)]_1_[+1(9.62e-06)]_\ 4 chr2R:13015272-13015392 3.46e-01 120 chrX:10363262-10363382 3.42e-04 101_[+4(5.61e-06)]_11 chr3L:20710605-20710725 8.55e-01 120 chrX:10325035-10325155 2.85e-02 23_[+3(1.25e-05)]_89 chr3R:20829531-20829651 6.13e-01 120 chrX:10363015-10363135 9.24e-01 120 chr2R:9684133-9684253 9.93e-01 120 chr3L:20809484-20809604 7.84e-01 120 chr3R:17540206-17540326 6.24e-01 120 chr3L:15171921-15172041 5.17e-03 55_[+3(6.13e-06)]_57 chr3R:11663664-11663784 9.81e-01 120 chr3L:8448564-8448684 2.27e-01 120 chrX:17473429-17473549 2.31e-01 120 chr3L:10849719-10849839 2.68e-01 120 chr2R:17469501-17469621 1.07e-01 120 chrX:11441012-11441132 4.92e-01 120 chr2R:13507322-13507442 1.49e-05 28_[+3(2.81e-06)]_84 chrX:2790209-2790329 5.40e-03 120 chr2R:16270770-16270890 8.14e-05 47_[+1(1.87e-05)]_17_[+1(3.73e-07)]_\ 40 chr3L:20731020-20731140 1.05e-01 120 chr2R:9388683-9388803 8.03e-01 120 chr2L:7158962-7159082 7.96e-01 120 chr3R:13804014-13804134 7.29e-01 120 chr3L:21056339-21056459 1.49e-01 120 chr3R:7892500-7892620 1.21e-03 53_[+2(2.95e-06)]_59 chr2R:10160253-10160373 4.82e-02 120 chr3L:14781812-14781932 9.49e-01 120 chr2L:9618017-9618137 8.22e-02 120 chr3R:5861363-5861483 5.07e-01 120 chr3R:21156289-21156409 8.27e-04 106_[+4(7.68e-07)]_6 chr3R:15670623-15670743 1.49e-01 120 chrX:20507827-20507947 1.15e-07 9_[+1(9.05e-05)]_6_[+2(5.13e-06)]_\ 21_[+5(2.13e-05)]_60 chr3L:17791627-17791747 7.12e-01 120 chr3R:17394875-17394995 7.02e-01 120 chr2R:11970374-11970494 1.33e-01 120 chr2L:5520080-5520200 3.46e-01 120 chr3L:6495443-6495563 9.99e-01 120 chr3L:6743455-6743575 5.70e-01 120 chr3L:4254586-4254706 9.99e-01 120 chr3R:17385395-17385515 1.21e-01 100_[+5(3.41e-05)]_12 chr2L:20390122-20390242 9.43e-02 120 chr3L:18030087-18030207 9.79e-01 120 chrX:14583380-14583500 5.50e-02 120 chrX:14634841-14634961 7.67e-01 120 chr3L:16129308-16129428 6.66e-02 120 chr2R:7879107-7879227 9.06e-01 120 chrX:16385913-16386033 4.47e-06 32_[+1(6.51e-06)]_20_[+5(6.09e-05)]_\ 52 chrX:19166356-19166476 1.21e-03 58_[+1(1.65e-05)]_54 chr3L:1742639-1742759 2.32e-07 55_[+2(3.62e-06)]_4_[+3(6.13e-06)]_\ 45 chr3R:16655922-16656042 2.36e-01 120 chr2L:16743200-16743320 8.39e-01 120 chrX:19225059-19225179 1.00e+00 120 chr2R:11175633-11175753 2.36e-01 120 chr3L:16386077-16386197 9.43e-01 120 chrX:2011747-2011867 6.27e-01 120 chr3L:15693170-15693290 1.14e-02 3_[+3(6.13e-06)]_109 chr2R:16581729-16581849 4.59e-01 120 chr3L:8951231-8951351 9.98e-01 120 chr3L:17003656-17003776 1.09e-07 13_[+1(3.73e-07)]_8_[+5(2.65e-05)]_\ 36_[+2(2.09e-05)]_39 chr3L:20784867-20784987 9.91e-01 120 chr3L:13923440-13923560 8.65e-01 120 chr3R:23346882-23347002 1.00e+00 120 chrX:11885499-11885619 1.33e-02 2_[+2(3.62e-06)]_110 chrX:9202204-9202324 8.37e-01 120 chr3R:16213044-16213164 1.00e+00 120 chr3L:6174021-6174141 9.84e-01 120 chr2R:16660201-16660321 4.66e-01 120 chrX:20631210-20631330 9.50e-01 120 chr3R:6368751-6368871 9.42e-01 120 chr3R:9344911-9345031 9.81e-01 120 chr2R:24139269-24139389 4.50e-02 120 chr2R:21017427-21017547 2.38e-01 120 chr3R:9237885-9238005 9.76e-01 120 chr2L:20757906-20758026 6.38e-01 120 chr2R:21018419-21018539 7.23e-02 54_[+2(9.55e-05)]_58 chr3L:10350838-10350958 9.28e-01 120 chr2L:3507581-3507701 9.82e-01 120 chrX:18525058-18525178 3.22e-01 120 chr3L:627836-627956 7.30e-03 44_[+3(2.87e-05)]_68 chr3L:19016575-19016695 9.07e-01 120 chr3L:630267-630387 4.84e-01 120 chr2R:15381262-15381382 1.22e-01 120 chr3L:10868187-10868307 1.33e-03 33_[+5(1.71e-05)]_79 chr4:1054002-1054122 6.74e-02 120 chr3R:5685713-5685833 6.92e-04 93_[+5(3.58e-05)]_19 chr3L:22277378-22277498 3.85e-02 120 chr3R:12406342-12406462 3.09e-01 120 chr2R:13482310-13482430 1.47e-01 83_[+1(3.87e-05)]_29 chr3R:26014372-26014492 9.20e-01 120 chr3R:4732158-4732278 7.41e-02 120 chr3L:8024914-8025034 8.78e-01 120 chr3R:14656903-14657023 8.19e-05 11_[+5(3.06e-06)]_101 chr2R:24293522-24293642 3.24e-05 27_[+5(7.12e-07)]_85 chr3R:27946747-27946867 5.62e-01 120 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chr3L:14031722-14031842 4.27e-02 34_[+1(6.51e-06)]_78 chrX:15063777-15063897 1.06e-04 88_[+4(9.86e-06)]_24 chr3L:12803755-12803875 9.16e-01 120 chrX:18900034-18900154 9.74e-01 120 chr2L:5981408-5981528 1.47e-03 105_[+3(5.19e-05)]_7 chr2L:17588717-17588837 9.89e-01 120 chrX:16944149-16944269 3.33e-01 120 chr3R:12426103-12426223 1.55e-05 40_[+4(2.38e-05)]_50_[+3(1.71e-05)]_\ 14 chr3R:20588514-20588634 9.70e-01 120 chr2R:16110085-16110205 6.32e-01 120 chr2L:5326809-5326929 9.98e-01 120 chr3L:3543799-3543919 1.91e-01 120 chr3L:6157786-6157906 3.73e-02 120 chr3R:19031305-19031425 1.00e+00 120 chrX:15297257-15297377 9.99e-01 120 chr3L:20771287-20771407 1.00e+00 120 chr2L:10522636-10522756 9.71e-01 120 chr2R:15371490-15371610 4.06e-01 120 chr3R:28599600-28599720 7.57e-01 120 chrX:7617043-7617163 1.67e-02 84_[+4(5.21e-05)]_28 chr3R:16157712-16157832 1.00e+00 120 chr3R:13033255-13033375 5.17e-05 67_[+1(3.31e-05)]_[+2(7.97e-06)]_37 chr3L:13356205-13356325 4.84e-03 85_[+1(1.22e-05)]_27 chrX:3357847-3357967 3.76e-02 120 chr3L:14195901-14196021 3.07e-01 47_[+1(3.31e-05)]_65 chr3R:5470724-5470844 1.00e+00 120 chr2R:18609065-18609185 1.14e-01 120 chr2R:21017648-21017768 1.29e-01 120 chr2R:13990775-13990895 7.91e-01 120 chr3R:16837898-16838018 7.31e-01 120 chr2L:11528338-11528458 8.62e-01 120 chr3L:3903044-3903164 4.04e-01 120 chr3L:2489572-2489692 1.20e-01 120 chr3L:19834340-19834460 3.25e-01 120 chr3R:26013007-26013127 1.63e-01 120 chr3R:25281226-25281346 4.87e-05 12_[+5(3.77e-05)]_14_[+2(2.09e-05)]_\ 78 chr3R:18242489-18242609 9.14e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************