******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12071.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:30874764-30874884 1.0000 120 chr3R:23846307-23846427 1.0000 120 chr2L:14395189-14395309 1.0000 120 chrX:15602558-15602678 1.0000 120 chr3L:4088886-4089006 1.0000 120 chr3R:22067382-22067502 1.0000 120 chr2R:23611937-23612057 1.0000 120 chr3R:13320011-13320131 1.0000 120 chr2R:18485717-18485837 1.0000 120 chr3R:17759922-17760042 1.0000 120 chr3R:13446140-13446260 1.0000 120 chr3R:9530034-9530154 1.0000 120 chr3R:12961053-12961173 1.0000 120 chrX:16420169-16420289 1.0000 120 chr3R:18903022-18903142 1.0000 120 chrX:18511046-18511166 1.0000 120 chr3R:13441847-13441967 1.0000 120 chr3R:30934043-30934163 1.0000 120 chr3R:17007470-17007590 1.0000 120 chr3R:9448508-9448628 1.0000 120 chr3L:2532547-2532667 1.0000 120 chr2R:9214323-9214443 1.0000 120 chr3R:19571332-19571452 1.0000 120 chr3L:14109988-14110108 1.0000 120 chr3L:18304574-18304694 1.0000 120 chr3L:6998780-6998900 1.0000 120 chr2L:20399315-20399435 1.0000 120 chr2L:1617491-1617611 1.0000 120 chr2L:18864240-18864360 1.0000 120 chrX:10044028-10044148 1.0000 120 chr3R:29978775-29978895 1.0000 120 chr2R:20963447-20963567 1.0000 120 chr2L:12509606-12509726 1.0000 120 chr3L:7000078-7000198 1.0000 120 chr2R:9269490-9269610 1.0000 120 chr2L:18625130-18625250 1.0000 120 chr3L:2254456-2254576 1.0000 120 chr3L:15597180-15597300 1.0000 120 chrX:19306714-19306834 1.0000 120 chr2L:7387021-7387141 1.0000 120 chr2L:12025616-12025736 1.0000 120 chr2L:10146886-10147006 1.0000 120 chr2R:22614290-22614410 1.0000 120 chr3R:26934634-26934754 1.0000 120 chrX:2861066-2861186 1.0000 120 chr2L:6817496-6817616 1.0000 120 chr3L:11107574-11107694 1.0000 120 chr2L:17433200-17433320 1.0000 120 chr3R:5207512-5207632 1.0000 120 chr3R:6399418-6399538 1.0000 120 chr3R:6203146-6203266 1.0000 120 chr3R:30193961-30194081 1.0000 120 chr3R:6414575-6414695 1.0000 120 chr3R:12657103-12657223 1.0000 120 chr3R:23139108-23139228 1.0000 120 chr3L:12392931-12393051 1.0000 120 chr2L:7528243-7528363 1.0000 120 chr2R:12441333-12441453 1.0000 120 chr2L:14307668-14307788 1.0000 120 chr2R:11426861-11426981 1.0000 120 chr2L:323088-323208 1.0000 120 chr3R:30932214-30932334 1.0000 120 chr3R:31240167-31240287 1.0000 120 chr2L:9010458-9010578 1.0000 120 chr2R:17694737-17694857 1.0000 120 chrX:3869261-3869381 1.0000 120 chr2L:425614-425734 1.0000 120 chr2L:21062747-21062867 1.0000 120 chrX:12667149-12667269 1.0000 120 chr3R:19467597-19467717 1.0000 120 chr3L:17896102-17896222 1.0000 120 chr3R:9491297-9491417 1.0000 120 chr3R:9918976-9919096 1.0000 120 chr3R:31758942-31759062 1.0000 120 chr2L:5113623-5113743 1.0000 120 chr2R:18877804-18877924 1.0000 120 chr2R:22200011-22200131 1.0000 120 chr3L:14262929-14263049 1.0000 120 chr2R:22143271-22143391 1.0000 120 chr2L:745885-746005 1.0000 120 chr3R:26185391-26185511 1.0000 120 chr3L:16429610-16429730 1.0000 120 chr2R:10395819-10395939 1.0000 120 chr2L:14396445-14396565 1.0000 120 chr3L:3691759-3691879 1.0000 120 chr3R:5077472-5077592 1.0000 120 chr3L:11358803-11358923 1.0000 120 chr3R:12716374-12716494 1.0000 120 chr3L:19504859-19504979 1.0000 120 chr2R:11031542-11031662 1.0000 120 chr3L:11442068-11442188 1.0000 120 chr3R:10186183-10186303 1.0000 120 chr2L:8148770-8148890 1.0000 120 chrX:12241195-12241315 1.0000 120 chr3R:6401073-6401193 1.0000 120 chr2R:6871330-6871450 1.0000 120 chr3L:7349478-7349598 1.0000 120 chr2L:7215818-7215938 1.0000 120 chr3L:6612788-6612908 1.0000 120 chr3R:23601545-23601665 1.0000 120 chr2L:3748813-3748933 1.0000 120 chr3R:11178477-11178597 1.0000 120 chrX:10462080-10462200 1.0000 120 chr2L:3228846-3228966 1.0000 120 chr2L:4861665-4861785 1.0000 120 chr2R:7253911-7254031 1.0000 120 chrX:19261888-19262008 1.0000 120 chr2R:11423584-11423704 1.0000 120 chr2R:6544008-6544128 1.0000 120 chr3R:14026655-14026775 1.0000 120 chr2R:14487702-14487822 1.0000 120 chr3R:18243734-18243854 1.0000 120 chr2L:10499787-10499907 1.0000 120 chr2L:18717494-18717614 1.0000 120 chr3R:28588538-28588658 1.0000 120 chr3R:17966146-17966266 1.0000 120 chrX:14727709-14727829 1.0000 120 chr2R:14031222-14031342 1.0000 120 chrX:6638301-6638421 1.0000 120 chr3R:29066436-29066556 1.0000 120 chr3R:29651594-29651714 1.0000 120 chrX:6310559-6310679 1.0000 120 chr3L:19496179-19496299 1.0000 120 chr2R:18667115-18667235 1.0000 120 chr2R:21082696-21082816 1.0000 120 chr3R:19613058-19613178 1.0000 120 chrX:17294271-17294391 1.0000 120 chr2R:22205670-22205790 1.0000 120 chr2L:892577-892697 1.0000 120 chr3L:21192119-21192239 1.0000 120 chr2L:20016531-20016651 1.0000 120 chr3R:25544165-25544285 1.0000 120 chr2R:19449660-19449780 1.0000 120 chr3L:11286623-11286743 1.0000 120 chr2R:12670139-12670259 1.0000 120 chr2R:16289302-16289422 1.0000 120 chr2L:5064111-5064231 1.0000 120 chrX:13088669-13088789 1.0000 120 chr2L:5303726-5303846 1.0000 120 chr3L:18179941-18180061 1.0000 120 chr2R:17714548-17714668 1.0000 120 chr2L:19998308-19998428 1.0000 120 chr3R:20549127-20549247 1.0000 120 chr3L:2469773-2469893 1.0000 120 chr3L:960706-960826 1.0000 120 chr3L:20088947-20089067 1.0000 120 chr2R:18605480-18605600 1.0000 120 chr3L:779149-779269 1.0000 120 chr3L:17006209-17006329 1.0000 120 chr3L:13912890-13913010 1.0000 120 chr3L:10734650-10734770 1.0000 120 chr3L:8683927-8684047 1.0000 120 chr2R:13470239-13470359 1.0000 120 chr2R:6464932-6465052 1.0000 120 chr3L:22276793-22276913 1.0000 120 chrX:5917114-5917234 1.0000 120 chr2L:1637995-1638115 1.0000 120 chr3L:18020980-18021100 1.0000 120 chr3L:1880811-1880931 1.0000 120 chr3L:483958-484078 1.0000 120 chr2L:128289-128409 1.0000 120 chr3L:630836-630956 1.0000 120 chrX:1387329-1387449 1.0000 120 chr2R:17721593-17721713 1.0000 120 chr3L:9095198-9095318 1.0000 120 chr2L:12464236-12464356 1.0000 120 chr2R:12729311-12729431 1.0000 120 chr3L:11402416-11402536 1.0000 120 chr3R:23284413-23284533 1.0000 120 chr3R:29757339-29757459 1.0000 120 chr2R:10079927-10080047 1.0000 120 chr3R:9891691-9891811 1.0000 120 chr2L:11210354-11210474 1.0000 120 chr2L:3779501-3779621 1.0000 120 chr3L:11085956-11086076 1.0000 120 chr2R:9077828-9077948 1.0000 120 chr2L:14405205-14405325 1.0000 120 chr2R:14360164-14360284 1.0000 120 chr3R:27605774-27605894 1.0000 120 chr3L:3082339-3082459 1.0000 120 chr3L:20664113-20664233 1.0000 120 chr3R:22108480-22108600 1.0000 120 chr3R:23249130-23249250 1.0000 120 chr3R:18740007-18740127 1.0000 120 chr3R:18315419-18315539 1.0000 120 chr3R:20273700-20273820 1.0000 120 chr2R:12871792-12871912 1.0000 120 chr2L:20390146-20390266 1.0000 120 chr3R:16211342-16211462 1.0000 120 chr3R:20263071-20263191 1.0000 120 chr2R:9060138-9060258 1.0000 120 chr2L:6821798-6821918 1.0000 120 chr3L:3755829-3755949 1.0000 120 chr3R:11993407-11993527 1.0000 120 chr3L:1093116-1093236 1.0000 120 chr3L:8835082-8835202 1.0000 120 chr3L:17808931-17809051 1.0000 120 chr2R:23378304-23378424 1.0000 120 chr2L:12498670-12498790 1.0000 120 chr3L:14545843-14545963 1.0000 120 chr3L:19847092-19847212 1.0000 120 chr2R:21549093-21549213 1.0000 120 chr2R:24746014-24746134 1.0000 120 chr3L:12835653-12835773 1.0000 120 chr2R:19125699-19125819 1.0000 120 chr3L:4025881-4026001 1.0000 120 chr2R:9413322-9413442 1.0000 120 chr3L:22847808-22847928 1.0000 120 chr3L:8347516-8347636 1.0000 120 chr3L:8853022-8853142 1.0000 120 chr3R:11338419-11338539 1.0000 120 chr3R:14284439-14284559 1.0000 120 chr2R:13437857-13437977 1.0000 120 chr2L:7685440-7685560 1.0000 120 chr2L:2861542-2861662 1.0000 120 chr3L:15591309-15591429 1.0000 120 chrX:5664345-5664465 1.0000 120 chrX:3282085-3282205 1.0000 120 chr3L:8912523-8912643 1.0000 120 chr2R:23740424-23740544 1.0000 120 chr3L:19263651-19263771 1.0000 120 chr2R:21648249-21648369 1.0000 120 chr3L:1169732-1169852 1.0000 120 chr3L:16494914-16495034 1.0000 120 chr2L:20840585-20840705 1.0000 120 chr3L:3078933-3079053 1.0000 120 chrX:19683060-19683180 1.0000 120 chr2L:2864736-2864856 1.0000 120 chr3R:26099368-26099488 1.0000 120 chr3L:18994717-18994837 1.0000 120 chr3R:10863284-10863404 1.0000 120 chr3R:23947153-23947273 1.0000 120 chr2R:20903610-20903730 1.0000 120 chr3R:8980812-8980932 1.0000 120 chr3L:17531544-17531664 1.0000 120 chr2L:1627911-1628031 1.0000 120 chr3R:12280908-12281028 1.0000 120 chr3L:1690837-1690957 1.0000 120 chr2L:4829149-4829269 1.0000 120 chr2L:1650151-1650271 1.0000 120 chr3R:7779768-7779888 1.0000 120 chr3L:21055982-21056102 1.0000 120 chr3R:19223516-19223636 1.0000 120 chr3L:12045531-12045651 1.0000 120 chr3L:3381987-3382107 1.0000 120 chr2L:3323530-3323650 1.0000 120 chr2R:15846376-15846496 1.0000 120 chr2R:15480288-15480408 1.0000 120 chr3L:882078-882198 1.0000 120 chrX:17298078-17298198 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG12071/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG12071.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.29 C 0.22 G 0.214 T 0.276 Background letter frequencies (from file dataset with add-one prior applied): A 0.29 C 0.22 G 0.214 T 0.276 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF DTGTTTGY MEME-1 width = 8 sites = 102 llr = 729 E-value = 3.7e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif DTGTTTGY MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:3:::3: pos.-specific C 1::::::6 probability G 3:7:3:7: matrix T 4a:a7a:4 bits 2.2 2.0 1.8 * * * 1.6 * * * Relative 1.3 *** * Entropy 1.1 ****** (10.3 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel TTGTTTGC consensus G A G AT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGTTTGY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2861542-2861662 62 1.25e-05 TCAACATTAT GTGTTTGC ACTCTCGGTA chr2R:18605480-18605600 58 1.25e-05 CCAAACAGCT GTGTTTGC CCATGTTTGG chr3R:31240167-31240287 49 1.25e-05 CAAGTTTATT GTGTTTGC CTTGGCTATT chr3L:882078-882198 79 2.86e-05 CAACCCCTCT TTGTTTGC CCAAGGGTTG chr3L:20664113-20664233 94 2.86e-05 GTGCTGTCTG TTGTTTGC CATGTTTTTG chrX:1387329-1387449 71 2.86e-05 CAAACTTTGC TTGTTTGC ACTGCTCAGC chr3L:960706-960826 83 2.86e-05 CGAGTGGTTT TTGTTTGC GGAAGGCAAA chrX:12241195-12241315 111 2.86e-05 TGATCGGTGG TTGTTTGC AG chr3R:30932214-30932334 50 2.86e-05 GTCCGCTTCT TTGTTTGC AGCGTGCAAA chr3L:11107574-11107694 40 2.86e-05 GTTATTCATT TTGTTTGC TTGTCAGTCA chrX:15602558-15602678 29 2.86e-05 GTATATTCAT TTGTTTGC CAATCAGCCT chr2R:23740424-23740544 32 4.43e-05 TGAATATTTT GTGTTTGT ATTTGTCTGC chr3L:3082339-3082459 105 4.43e-05 GCTCGTTCGT GTGTTTGT TTTTCAAT chr3R:30934043-30934163 31 4.43e-05 GGAAGAGGGT GTGTTTGT GTAATGGCGG chr3R:13320011-13320131 80 4.43e-05 CGGAGCGCTA GTGTTTGT TTAATTCCGT chr2L:5064111-5064231 47 6.46e-05 GATTTTCGGC TTGTTTGT GTTTTCTGAT chr3R:11178477-11178597 67 6.46e-05 CGTTATGCAT TTGTTTGT TTTGTCAACA chr3L:16429610-16429730 23 6.46e-05 ATGTTTCTTT TTGTTTGT TCCATAACAA chr3R:19467597-19467717 67 6.46e-05 CATACCCACA TTGTTTGT CTACAGCGAC chr2L:14307668-14307788 67 6.46e-05 TATGCTATTT TTGTTTGT CTTTACTAAT chr2R:12441333-12441453 69 6.46e-05 GGCGCGTGTT TTGTTTGT AAACACCGAT chr2L:14395189-14395309 46 6.46e-05 ATTTTGTGCT TTGTTTGT GATTTAGTTT chr3L:8835082-8835202 23 9.12e-05 ATCTGTACAA ATGTTTGC CTTCGCCGGG chr3R:18740007-18740127 31 9.12e-05 GCGCAAGCGA GTGTGTGC CGCGGTGCCG chr3L:19504859-19504979 11 9.12e-05 CGTGATACAA GTGTGTGC TTTAGCTGCA chr3R:9918976-9919096 60 9.12e-05 CTTGTTGGCC ATGTTTGC CTGTATTTAC chr3R:12657103-12657223 74 9.12e-05 TGTCAACTGG ATGTTTGC CCGTCATTCG chr2R:9214323-9214443 71 9.12e-05 GTGGGCACAT GTGTGTGC AAATCATATT chr2L:3228846-3228966 51 1.04e-04 ATGCTGTAGG TTGTGTGC CATACAATTT chr3L:14262929-14263049 46 1.04e-04 GTGTTTATGC TTGTGTGC GTGTGTCTGC chr3R:29066436-29066556 62 1.21e-04 CGTTTTGGCA GTGTTTAC ATTGGAAACG chr3R:28588538-28588658 50 1.21e-04 CATTGCGCGC GTGTTTAC CATAGAAAAC chr2R:12871792-12871912 97 1.76e-04 gtgtgggcct gtgtgtgt atgCATAGCA chr2L:11210354-11210474 108 1.76e-04 CAgtgtgtgt gtgtgtgt gtgtg chr3L:18020980-18021100 103 1.76e-04 CCTTTTGAGA GTGTGTGT GTGAGCGACA chr3L:18179941-18180061 94 1.76e-04 CGCATTTGAT TTGTTTAC CAAATAAGTT chr3L:21192119-21192239 87 1.76e-04 CTGTGCATGT GTGTGTGT TGGTGGTGCC chr2L:10499787-10499907 34 1.76e-04 Ttgtgtgtgt gtgtgtgt gtgggtgggt chr3R:12716374-12716494 84 1.76e-04 CCATAAACAA TTGTTTAC TGCCAGAATT chr2L:745885-746005 72 1.76e-04 CAGCTGTCGT TTGTTTAC AACCGGCGAA chr2R:18877804-18877924 108 1.76e-04 gtgcgtgtgt gtgtgtgt gtgtT chrX:3869261-3869381 17 1.76e-04 CCTGTTATCT ATGTTTGT TTTCTTTACG chr3L:2254456-2254576 59 1.76e-04 ACATTTGCGC TTGTTTAC CCAACATTAA chr3L:14109988-14110108 15 1.76e-04 CTCTAGAAAt gtgtgtgt gtgtgtgtgt chr3R:23947153-23947273 42 2.05e-04 CGCACATCAT CTGTTTGC GTTGGTAAAT chr3L:2469773-2469893 28 2.05e-04 GTTGTATACC CTGTTTGC TTAGCTGCTT chr3L:6612788-6612908 35 2.05e-04 GCCCACTGTT CTGTTTGC ATTGCTTATC chr2L:7215818-7215938 83 2.05e-04 ATAGAAATGA CTGTTTGC ATGTGCCGAG chr3L:15597180-15597300 55 2.05e-04 CTCAATTATC TTGTGTGT GATATTTCAC chr3L:12045531-12045651 75 2.35e-04 GTATCTATCT GTATTTGC CCGACGCTTA chr2L:5113623-5113743 74 2.35e-04 CGCGCGTATC GTATTTGC ATCTAATATT chr2L:323088-323208 111 2.35e-04 TAGAGTCTTT GTATTTGC TG chr3R:26934634-26934754 80 2.35e-04 GATCTGGTGT ATGTGTGC GAAATGCAAA chrX:19306714-19306834 71 2.35e-04 CCATAAAGGA GTATTTGC ATTGGCCTAA chr3R:9530034-9530154 50 2.35e-04 atatatctat atgtgtgC TACGGCAGTA chr3L:16494914-16495034 76 2.57e-04 AATGTTTCCT TTATTTGC GTTTTGTGAA chr3L:1169732-1169852 27 2.57e-04 TTATATTGTA TTATTTGC GCGGCGATAA chr3R:17966146-17966266 97 2.57e-04 TATCGAAGTA TTATTTGC ATACATCTAC chr3R:5207512-5207632 7 2.57e-04 ttgtta ttattTGC TTAACGCTTT chr2L:3748813-3748933 100 2.78e-04 CATCTTATTC GTGTTTAT AGTTGCATAC chrX:17298078-17298198 108 3.05e-04 TCTACCGTCA TTGTTTAT CAAGT chr3L:4025881-4026001 29 3.05e-04 TATGCGCAGG TTGTTTAT CAGCGCAAAC chr2R:12729311-12729431 65 3.05e-04 CATTCGGCCC TTGTTTAT ATTTGCATAA chrX:12667149-12667269 61 3.05e-04 TATTTATTGG TTGTTTAT TAAAGTGTTT chr2L:18625130-18625250 39 3.05e-04 TCTGTTTCTG TTGTTTAT TTATAGTTTA chr3R:9448508-9448628 46 3.05e-04 ttgttgagtc ttgtttat atatattatc chr3L:3078933-3079053 49 3.57e-04 GCTTAATTTC GTGTGTAC ATATTTACAC chr3L:19847092-19847212 62 3.57e-04 GTTTAAACGA CTGTTTGT CTGCCATAAA chr3L:11358803-11358923 27 3.57e-04 ATCCCCGTCC GTGTGTAC ATGACGCCAA chr3R:31758942-31759062 82 3.57e-04 CTACGCCAGA GTGTGTAC AGCTTAACAC chr2L:3323530-3323650 38 4.12e-04 GTCTCATGCT TTGTGTAC AATCTAATCA chr3L:21055982-21056102 65 4.12e-04 GCAAATGGGT TTGTGTAC CTTGTACCTA chr3L:19496179-19496299 78 4.12e-04 GACAACAATA ATGTGTGT TATCAGCTGA chr3L:7349478-7349598 67 4.12e-04 TGCAGAGTCT GTATTTGT ATACATTTGG chr3R:19571332-19571452 62 4.12e-04 ATTAAAATTA TTGTGTAC GACGACCAAT chr3R:22067382-22067502 38 4.12e-04 TTGGCCACTC GTATTTGT TTGGCATTTC chr3L:13912890-13913010 70 4.50e-04 tttatttaat ttatttgt tatttatttG chr3R:23846307-23846427 106 4.50e-04 cggtgtgtat ctgtgtgc gagtgtt chrX:3282085-3282205 66 4.86e-04 TTGTTGCTCA ATATTTGC ATATTTGTTT chr2L:19998308-19998428 67 4.86e-04 AGTAAGGTAA ATATTTGC CACAAACTTT chr2L:5303726-5303846 101 4.86e-04 TTACACATAC ATATTTGC ATACTGATAA chr2R:22143271-22143391 73 4.86e-04 TTGCATGTAA ATATTTGC ATCAGTGGCC chr3L:7000078-7000198 75 4.86e-04 TTAACTATGC ATATTTGC GCAGCTCATT chr3R:13441847-13441967 110 4.86e-04 AGTTCTTTAA ATATTTGC CGG chr3R:18903022-18903142 65 4.86e-04 CCATAAGCGT ATATTTGC TGGATTAATT chr2R:15480288-15480408 64 5.48e-04 ATACATATGA ATGTTTAT GACTGGATAA chr2L:2864736-2864856 92 5.48e-04 CCAGAATTCA ATGTTTAT TTAAATGACA chr3R:11993407-11993527 73 5.48e-04 atgtatgtat gtgtgtat ttacatatgt chr3R:20273700-20273820 53 5.48e-04 TTTGATTTAC ATGTTTAT CTTTATCGGC chr2R:9269490-9269610 111 5.48e-04 TCGATTGAAT ATGTTTAT TT chr3L:2532547-2532667 97 5.48e-04 GTAGATGTAG ATGTTTAT AGAGCATATT chrX:6638301-6638421 79 6.40e-04 CATATGTTCC GTATTTAC ACACACACAC chr2R:14031222-14031342 79 7.15e-04 CTTTGTGCAA ATATTTGT GTCATTAAAC chr2R:23611937-23612057 34 7.15e-04 CTGCCCCCTT TTATTTAC GGCTGTAAAT chr3L:11286623-11286743 11 7.54e-04 AAACTATTTG CTATTTGC TTTTTCGAAA chr2L:3779501-3779621 44 7.93e-04 GTGGAAATAT CTGTTTAT TGCACTCGGT chr2R:6871330-6871450 113 8.45e-04 TTGGACTCGA ATGTGTAT chrX:13088669-13088789 19 9.66e-04 ACACATACAT GTATGTac acacacacac chrX:6310559-6310679 26 9.66e-04 TCCTTAAGTC GTATGTAC TCAGCTCAAC chr2R:14487702-14487822 29 1.01e-03 ATAAATACAT TTATGTAC ATACATATAC chr3L:18994717-18994837 56 1.21e-03 CAGCCATATA CTATGTGT AGTTTATGGC chr3L:15591309-15591429 79 1.21e-03 AGCAGTGGAT GTGTTTGG TTTTATAGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGTTTGY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2861542-2861662 1.3e-05 61_[+1]_51 chr2R:18605480-18605600 1.3e-05 57_[+1]_55 chr3R:31240167-31240287 1.3e-05 48_[+1]_64 chr3L:882078-882198 2.9e-05 78_[+1]_34 chr3L:20664113-20664233 2.9e-05 93_[+1]_19 chrX:1387329-1387449 2.9e-05 70_[+1]_42 chr3L:960706-960826 2.9e-05 82_[+1]_30 chrX:12241195-12241315 2.9e-05 110_[+1]_2 chr3R:30932214-30932334 2.9e-05 49_[+1]_63 chr3L:11107574-11107694 2.9e-05 39_[+1]_73 chrX:15602558-15602678 2.9e-05 28_[+1]_84 chr2R:23740424-23740544 4.4e-05 31_[+1]_81 chr3L:3082339-3082459 4.4e-05 104_[+1]_8 chr3R:30934043-30934163 4.4e-05 30_[+1]_82 chr3R:13320011-13320131 4.4e-05 79_[+1]_33 chr2L:5064111-5064231 6.5e-05 46_[+1]_66 chr3R:11178477-11178597 6.5e-05 66_[+1]_46 chr3L:16429610-16429730 6.5e-05 22_[+1]_90 chr3R:19467597-19467717 6.5e-05 66_[+1]_46 chr2L:14307668-14307788 6.5e-05 66_[+1]_46 chr2R:12441333-12441453 6.5e-05 68_[+1]_44 chr2L:14395189-14395309 6.5e-05 45_[+1]_67 chr3L:8835082-8835202 9.1e-05 22_[+1]_90 chr3R:18740007-18740127 9.1e-05 30_[+1]_82 chr3L:19504859-19504979 9.1e-05 10_[+1]_102 chr3R:9918976-9919096 9.1e-05 59_[+1]_53 chr3R:12657103-12657223 9.1e-05 73_[+1]_39 chr2R:9214323-9214443 9.1e-05 70_[+1]_42 chr2L:3228846-3228966 0.0001 50_[+1]_62 chr3L:14262929-14263049 0.0001 45_[+1]_67 chr3R:29066436-29066556 0.00012 61_[+1]_51 chr3R:28588538-28588658 0.00012 49_[+1]_63 chr2R:12871792-12871912 0.00018 96_[+1]_16 chr2L:11210354-11210474 0.00018 107_[+1]_5 chr3L:18020980-18021100 0.00018 102_[+1]_10 chr3L:18179941-18180061 0.00018 93_[+1]_19 chr3L:21192119-21192239 0.00018 86_[+1]_26 chr2L:10499787-10499907 0.00018 33_[+1]_79 chr3R:12716374-12716494 0.00018 83_[+1]_29 chr2L:745885-746005 0.00018 71_[+1]_41 chr2R:18877804-18877924 0.00018 107_[+1]_5 chrX:3869261-3869381 0.00018 16_[+1]_96 chr3L:2254456-2254576 0.00018 58_[+1]_54 chr3L:14109988-14110108 0.00018 14_[+1]_98 chr3R:23947153-23947273 0.0002 41_[+1]_71 chr3L:2469773-2469893 0.0002 27_[+1]_85 chr3L:6612788-6612908 0.0002 34_[+1]_78 chr2L:7215818-7215938 0.0002 82_[+1]_30 chr3L:15597180-15597300 0.0002 54_[+1]_58 chr3L:12045531-12045651 0.00023 74_[+1]_38 chr2L:5113623-5113743 0.00023 73_[+1]_39 chr2L:323088-323208 0.00023 110_[+1]_2 chr3R:26934634-26934754 0.00023 79_[+1]_33 chrX:19306714-19306834 0.00023 70_[+1]_42 chr3R:9530034-9530154 0.00023 49_[+1]_63 chr3L:16494914-16495034 0.00026 75_[+1]_37 chr3L:1169732-1169852 0.00026 26_[+1]_86 chr3R:17966146-17966266 0.00026 96_[+1]_16 chr3R:5207512-5207632 0.00026 6_[+1]_106 chr2L:3748813-3748933 0.00028 99_[+1]_13 chrX:17298078-17298198 0.00031 107_[+1]_5 chr3L:4025881-4026001 0.00031 28_[+1]_84 chr2R:12729311-12729431 0.00031 64_[+1]_48 chrX:12667149-12667269 0.00031 60_[+1]_52 chr2L:18625130-18625250 0.00031 38_[+1]_74 chr3R:9448508-9448628 0.00031 45_[+1]_67 chr3L:3078933-3079053 0.00036 48_[+1]_64 chr3L:19847092-19847212 0.00036 61_[+1]_51 chr3L:11358803-11358923 0.00036 26_[+1]_86 chr3R:31758942-31759062 0.00036 81_[+1]_31 chr2L:3323530-3323650 0.00041 37_[+1]_75 chr3L:21055982-21056102 0.00041 64_[+1]_48 chr3L:19496179-19496299 0.00041 77_[+1]_35 chr3L:7349478-7349598 0.00041 66_[+1]_46 chr3R:19571332-19571452 0.00041 61_[+1]_51 chr3R:22067382-22067502 0.00041 37_[+1]_75 chr3L:13912890-13913010 0.00045 69_[+1]_43 chr3R:23846307-23846427 0.00045 105_[+1]_7 chrX:3282085-3282205 0.00049 65_[+1]_47 chr2L:19998308-19998428 0.00049 66_[+1]_46 chr2L:5303726-5303846 0.00049 100_[+1]_12 chr2R:22143271-22143391 0.00049 72_[+1]_40 chr3L:7000078-7000198 0.00049 74_[+1]_38 chr3R:13441847-13441967 0.00049 109_[+1]_3 chr3R:18903022-18903142 0.00049 64_[+1]_48 chr2R:15480288-15480408 0.00055 63_[+1]_49 chr2L:2864736-2864856 0.00055 91_[+1]_21 chr3R:11993407-11993527 0.00055 72_[+1]_40 chr3R:20273700-20273820 0.00055 52_[+1]_60 chr2R:9269490-9269610 0.00055 110_[+1]_2 chr3L:2532547-2532667 0.00055 96_[+1]_16 chrX:6638301-6638421 0.00064 78_[+1]_34 chr2R:14031222-14031342 0.00071 78_[+1]_34 chr2R:23611937-23612057 0.00071 33_[+1]_79 chr3L:11286623-11286743 0.00075 10_[+1]_102 chr2L:3779501-3779621 0.00079 43_[+1]_69 chr2R:6871330-6871450 0.00084 112_[+1] chrX:13088669-13088789 0.00097 18_[+1]_94 chrX:6310559-6310679 0.00097 25_[+1]_87 chr2R:14487702-14487822 0.001 28_[+1]_84 chr3L:18994717-18994837 0.0012 55_[+1]_57 chr3L:15591309-15591429 0.0012 78_[+1]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGTTTGY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DTGTTTGY width=8 seqs=102 chr2L:2861542-2861662 ( 62) GTGTTTGC 1 chr2R:18605480-18605600 ( 58) GTGTTTGC 1 chr3R:31240167-31240287 ( 49) GTGTTTGC 1 chr3L:882078-882198 ( 79) TTGTTTGC 1 chr3L:20664113-20664233 ( 94) TTGTTTGC 1 chrX:1387329-1387449 ( 71) TTGTTTGC 1 chr3L:960706-960826 ( 83) TTGTTTGC 1 chrX:12241195-12241315 ( 111) TTGTTTGC 1 chr3R:30932214-30932334 ( 50) TTGTTTGC 1 chr3L:11107574-11107694 ( 40) TTGTTTGC 1 chrX:15602558-15602678 ( 29) TTGTTTGC 1 chr2R:23740424-23740544 ( 32) GTGTTTGT 1 chr3L:3082339-3082459 ( 105) GTGTTTGT 1 chr3R:30934043-30934163 ( 31) GTGTTTGT 1 chr3R:13320011-13320131 ( 80) GTGTTTGT 1 chr2L:5064111-5064231 ( 47) TTGTTTGT 1 chr3R:11178477-11178597 ( 67) TTGTTTGT 1 chr3L:16429610-16429730 ( 23) TTGTTTGT 1 chr3R:19467597-19467717 ( 67) TTGTTTGT 1 chr2L:14307668-14307788 ( 67) TTGTTTGT 1 chr2R:12441333-12441453 ( 69) TTGTTTGT 1 chr2L:14395189-14395309 ( 46) TTGTTTGT 1 chr3L:8835082-8835202 ( 23) ATGTTTGC 1 chr3R:18740007-18740127 ( 31) GTGTGTGC 1 chr3L:19504859-19504979 ( 11) GTGTGTGC 1 chr3R:9918976-9919096 ( 60) ATGTTTGC 1 chr3R:12657103-12657223 ( 74) ATGTTTGC 1 chr2R:9214323-9214443 ( 71) GTGTGTGC 1 chr2L:3228846-3228966 ( 51) TTGTGTGC 1 chr3L:14262929-14263049 ( 46) TTGTGTGC 1 chr3R:29066436-29066556 ( 62) GTGTTTAC 1 chr3R:28588538-28588658 ( 50) GTGTTTAC 1 chr2R:12871792-12871912 ( 97) GTGTGTGT 1 chr2L:11210354-11210474 ( 108) GTGTGTGT 1 chr3L:18020980-18021100 ( 103) GTGTGTGT 1 chr3L:18179941-18180061 ( 94) TTGTTTAC 1 chr3L:21192119-21192239 ( 87) GTGTGTGT 1 chr2L:10499787-10499907 ( 34) GTGTGTGT 1 chr3R:12716374-12716494 ( 84) TTGTTTAC 1 chr2L:745885-746005 ( 72) TTGTTTAC 1 chr2R:18877804-18877924 ( 108) GTGTGTGT 1 chrX:3869261-3869381 ( 17) ATGTTTGT 1 chr3L:2254456-2254576 ( 59) TTGTTTAC 1 chr3L:14109988-14110108 ( 15) GTGTGTGT 1 chr3R:23947153-23947273 ( 42) CTGTTTGC 1 chr3L:2469773-2469893 ( 28) CTGTTTGC 1 chr3L:6612788-6612908 ( 35) CTGTTTGC 1 chr2L:7215818-7215938 ( 83) CTGTTTGC 1 chr3L:15597180-15597300 ( 55) TTGTGTGT 1 chr3L:12045531-12045651 ( 75) GTATTTGC 1 chr2L:5113623-5113743 ( 74) GTATTTGC 1 chr2L:323088-323208 ( 111) GTATTTGC 1 chr3R:26934634-26934754 ( 80) ATGTGTGC 1 chrX:19306714-19306834 ( 71) GTATTTGC 1 chr3R:9530034-9530154 ( 50) ATGTGTGC 1 chr3L:16494914-16495034 ( 76) TTATTTGC 1 chr3L:1169732-1169852 ( 27) TTATTTGC 1 chr3R:17966146-17966266 ( 97) TTATTTGC 1 chr3R:5207512-5207632 ( 7) TTATTTGC 1 chr2L:3748813-3748933 ( 100) GTGTTTAT 1 chrX:17298078-17298198 ( 108) TTGTTTAT 1 chr3L:4025881-4026001 ( 29) TTGTTTAT 1 chr2R:12729311-12729431 ( 65) TTGTTTAT 1 chrX:12667149-12667269 ( 61) TTGTTTAT 1 chr2L:18625130-18625250 ( 39) TTGTTTAT 1 chr3R:9448508-9448628 ( 46) TTGTTTAT 1 chr3L:3078933-3079053 ( 49) GTGTGTAC 1 chr3L:19847092-19847212 ( 62) CTGTTTGT 1 chr3L:11358803-11358923 ( 27) GTGTGTAC 1 chr3R:31758942-31759062 ( 82) GTGTGTAC 1 chr2L:3323530-3323650 ( 38) TTGTGTAC 1 chr3L:21055982-21056102 ( 65) TTGTGTAC 1 chr3L:19496179-19496299 ( 78) ATGTGTGT 1 chr3L:7349478-7349598 ( 67) GTATTTGT 1 chr3R:19571332-19571452 ( 62) TTGTGTAC 1 chr3R:22067382-22067502 ( 38) GTATTTGT 1 chr3L:13912890-13913010 ( 70) TTATTTGT 1 chr3R:23846307-23846427 ( 106) CTGTGTGC 1 chrX:3282085-3282205 ( 66) ATATTTGC 1 chr2L:19998308-19998428 ( 67) ATATTTGC 1 chr2L:5303726-5303846 ( 101) ATATTTGC 1 chr2R:22143271-22143391 ( 73) ATATTTGC 1 chr3L:7000078-7000198 ( 75) ATATTTGC 1 chr3R:13441847-13441967 ( 110) ATATTTGC 1 chr3R:18903022-18903142 ( 65) ATATTTGC 1 chr2R:15480288-15480408 ( 64) ATGTTTAT 1 chr2L:2864736-2864856 ( 92) ATGTTTAT 1 chr3R:11993407-11993527 ( 73) GTGTGTAT 1 chr3R:20273700-20273820 ( 53) ATGTTTAT 1 chr2R:9269490-9269610 ( 111) ATGTTTAT 1 chr3L:2532547-2532667 ( 97) ATGTTTAT 1 chrX:6638301-6638421 ( 79) GTATTTAC 1 chr2R:14031222-14031342 ( 79) ATATTTGT 1 chr2R:23611937-23612057 ( 34) TTATTTAC 1 chr3L:11286623-11286743 ( 11) CTATTTGC 1 chr2L:3779501-3779621 ( 44) CTGTTTAT 1 chr2R:6871330-6871450 ( 113) ATGTGTAT 1 chrX:13088669-13088789 ( 19) GTATGTAC 1 chrX:6310559-6310679 ( 26) GTATGTAC 1 chr2R:14487702-14487822 ( 29) TTATGTAC 1 chr3L:18994717-18994837 ( 56) CTATGTGT 1 chr3L:15591309-15591429 ( 79) GTGTTTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGTTTGY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.224 E= 3.7e-014 -49 -132 64 43 -1332 -1332 -1332 186 -19 -1332 180 -1332 -1332 -1332 -1332 186 -1332 -1332 41 137 -1332 -1332 -1332 186 11 -1332 168 -1332 -1332 140 -445 58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGTTTGY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 102 E= 3.7e-014 0.205882 0.088235 0.333333 0.372549 0.000000 0.000000 0.000000 1.000000 0.254902 0.000000 0.745098 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.284314 0.715686 0.000000 0.000000 0.000000 1.000000 0.313725 0.000000 0.686275 0.000000 0.000000 0.578431 0.009804 0.411765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DTGTTTGY MEME-1 regular expression -------------------------------------------------------------------------------- [TGA]T[GA]T[TG]T[GA][CT] -------------------------------------------------------------------------------- Time 7.78 secs. ******************************************************************************** ******************************************************************************** MOTIF WGYAAAYA MEME-2 width = 8 sites = 116 llr = 804 E-value = 6.3e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif WGYAAAYA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 33:a8a:a pos.-specific C 1:6:2:7: probability G 27:::::: matrix T 4:4:::3: bits 2.2 2.0 1.8 * * * 1.6 * * * Relative 1.3 * * * Entropy 1.1 ******* (10.0 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******* 0.0 -------- Multilevel TGCAAACA consensus AAT C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGYAAAYA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:15480288-15480408 31 2.02e-05 GAAACCAGTT TGCAAACA TGTACATGGC chr2L:4829149-4829269 94 2.02e-05 AATTTACGTG TGCAAACA CAACAGCTCA chr2L:2864736-2864856 32 2.02e-05 GCGTCGGCTG TGCAAACA TTTGCATTTG chr3R:29757339-29757459 48 2.02e-05 TGCAAATACG TGCAAACA GCCAAGTAAC chr3R:23284413-23284533 8 2.02e-05 TTGGATA TGCAAACA AACTACTGAT chr3L:483958-484078 87 2.02e-05 AGTCAATAAG TGCAAACA AGGCGAGGCG chr2R:14031222-14031342 61 2.02e-05 CATACATAAA TGCAAACA CTTTGTGCAA chr3R:30932214-30932334 62 2.02e-05 GTTTGCAGCG TGCAAACA CGTCACTCGa chr3L:12392931-12393051 42 2.02e-05 ATGAGGTCTG TGCAAACA TTTACGGAGC chr3R:26934634-26934754 92 2.02e-05 GTGTGCGAAA TGCAAACA GTTGCCACAT chr2R:18485717-18485837 39 2.02e-05 CAGACACACA TGCAAACA CACGGTCGCT chr2L:5303726-5303846 59 4.15e-05 AGCACACCAC AGCAAACA GAGTGGAGTG chr3L:16429610-16429730 56 4.15e-05 CATGGTAAAT AGCAAACA ACAAATAGTA chr3L:17896102-17896222 43 4.15e-05 AAATGCGTTG AGCAAACA AAATATGATC chr2L:7387021-7387141 99 4.15e-05 GAAATGCGGC AGCAAACA AATTAGACAA chr3L:1690837-1690957 73 5.71e-05 ACCATATATG GGCAAACA TTTAGACAAA chr3L:8835082-8835202 39 5.71e-05 GCCTTCGCCG GGCAAACA CTTATGTAGc chr3L:3755829-3755949 14 5.71e-05 AAACCAACTG GGCAAACA AGTTGGAGAA chr3L:17006209-17006329 109 5.71e-05 CTAAGGCAAT GGCAAACA GTAG chr3L:11442068-11442188 2 5.71e-05 A GGCAAACA GCGGATTCGG chrX:3282085-3282205 90 9.86e-05 GTTTTTGAAA CGCAAACA AATGTCAAGC chr3L:4025881-4026001 40 9.86e-05 TGTTTATCAG CGCAAACA AAAGCCGTCG chr2R:6464932-6465052 70 9.86e-05 actgtacaaa tgtaaaca acagcataaa chr3R:17966146-17966266 41 9.86e-05 TTGCCTCTCA TGTAAACA TTTGCATTAT chr3R:23601545-23601665 62 9.86e-05 AAAGCAATAC CGCAAACA CACATTTTCA chr2R:10395819-10395939 65 9.86e-05 TTCCGTTGCG TGTAAACA TTGAAGCTTT chr2L:21062747-21062867 98 9.86e-05 AGTGTAAAAT TGTAAACA ACTTTTGCCA chr2R:9214323-9214443 108 9.86e-05 GTTTGTTCTC CGCAAACA CGCCA chr3L:15591309-15591429 109 1.51e-04 CAGTATTACT TGCAAATA TTGA chr2R:19125699-19125819 17 1.51e-04 ACTTTTGTAC AGTAAACA TCGCTGCGAT chr3L:12835653-12835773 61 1.51e-04 TATATCGCCA AGTAAACA AGTAAATAAA chr2R:21549093-21549213 105 1.51e-04 CCAGCAACTG TGCAAATA TTGATAGG chr3R:11993407-11993527 94 1.51e-04 catatgtatA TGCAAATA GTGCGGGTGG chr2L:11210354-11210474 49 1.51e-04 CGGTTGGAAA AGTAAACA CAATCTGATT chr2L:1637995-1638115 41 1.51e-04 TAGTTTGCAG TGCAAATA CAAATCAGTT chr3L:11286623-11286743 48 1.51e-04 CTGATTCGAG TGCAAATA TTTACCATCT chr3R:6401073-6401193 70 1.51e-04 ATGACTGAAA TGCAAATa tgaacaaata chr3R:13446140-13446260 41 1.51e-04 AATATGAGTA TGCAAATA GGCTTAAAGC chr3L:8347516-8347636 46 1.93e-04 ACGCCAGCTG TGCACACA ACGTCGCGGT chr2L:20390146-20390266 67 1.93e-04 CTTCTGGGTA Tacaaaca gacaaacaaa chr3L:13912890-13913010 20 1.93e-04 TGtacataca tacaaaca tatgtacaaa chr3L:960706-960826 31 1.93e-04 ACTCCCAAGC TACAAACA TAAACTTTAT chr3R:27605774-27605894 79 2.40e-04 GGGCTTCGCG AGCAAATA GCCGCTGTTA chr2R:18605480-18605600 81 2.40e-04 TTTGGCCAAA GGTAAACA ATTTGTTTTG chr2L:19998308-19998428 109 2.40e-04 TTGCGTATAC GGTAAACA ATTT chr3R:19613058-19613178 95 2.40e-04 TTGTATGCTA GGTAAACA AATAACTTCT chr3L:19496179-19496299 48 2.40e-04 TTCTCAATGC GGTAAACA AAATTTAAGA chr2L:7215818-7215938 49 2.40e-04 TAAATATTTA AGCAAATA CACGAAAATT chr2R:22200011-22200131 69 2.40e-04 GACTGGGAAA AGCAAATA GGCCATGTTT chr2L:14307668-14307788 16 2.40e-04 CGACTTTGTA AGCAAATA AACATACAAA chr3R:6203146-6203266 10 2.40e-04 TCCGTGCTC GGTAAACA CAAACAAAGC chr2L:12509606-12509726 68 2.40e-04 AACAAATAAT AGCAAATA TTGAACCATT chr2L:18864240-18864360 55 2.40e-04 TAAAATTCCA GGTAAACA GTCAGTTGTT chr2R:24746014-24746134 107 2.85e-04 GGCTATAATA Aacaaaca agcaaa chrX:13088669-13088789 6 2.85e-04 ATTTA AGCACACA TACATGTATG chr2L:3228846-3228966 88 2.85e-04 TGCAAAGCCA AACAAACA GGCCGATAAC chrX:12667149-12667269 39 2.85e-04 TGTTGACAAT AACAAACA AGTTTATTTA chr2L:7528243-7528363 63 2.85e-04 GCAACTTAAA AGCACACA AACTACACAC chr2L:6817496-6817616 51 2.85e-04 GTGCTCCTTC AGCACACA CGAGTCGGGC chr3L:7000078-7000198 28 2.85e-04 atagccgaca aacaaaca aagcaaaaac chr3R:9530034-9530154 86 2.85e-04 CCGCTAAACA AACAAACA AACAGCCAGG chr3L:882078-882198 63 3.58e-04 GGAGAGCCAA GACAAACA ACCCCTCTTT chr3L:16494914-16495034 31 3.58e-04 ATTCGTAGGT GACaaaca atgatataaa chr3L:3082339-3082459 27 3.58e-04 AATAAATTAA GGCACACA TAATAATTAT chr3R:9891691-9891811 17 3.58e-04 gccccaacTG GGCACACA CTCTCACTAT chr3L:630836-630956 3 3.58e-04 TG GGCACACA CTAAATAGTT chr2L:18717494-18717614 64 3.58e-04 CAGACGGGCA GACAAACA TCTAAGCACA chr2L:14396445-14396565 96 3.58e-04 ATGTTAATAT GACAAACA AAATGTTGAA chr3L:2254456-2254576 44 3.58e-04 CTAATTCATG CGTAAACA TTTGCGCTTG chr2L:2861542-2861662 82 4.10e-04 TCTCGGTACG TGTAAATA AAACACGACA chr3R:14284439-14284559 58 4.10e-04 CAAAACGCAC TGTAAATA AAGGTGTAAA chr3L:17808931-17809051 92 4.10e-04 GTGTAGGTAG TGTAAATA CGTACAATTT chrX:3869261-3869381 85 4.10e-04 TCTATCCAGC TGTAAATA TTTATGGTCC chr3R:31240167-31240287 88 4.10e-04 AGCTCGATTG TGTAAATA TGCAGAGAAG chr3R:17759922-17760042 103 4.10e-04 CCGTCTGATG TGTAAATA TTGGCCCGGC chr2R:23611937-23612057 45 4.10e-04 TATTTACGGC TGTAAATA CGGGGGGCAA chr3R:16211342-16211462 86 4.97e-04 CCAACTCACT CGCACACA CAACTTGAAG chr3R:23249130-23249250 47 4.97e-04 CTCCTGCCAA TATAAACA ACCATTTGGG chr2R:7253911-7254031 37 4.97e-04 TAACTATTTA CACAAACA TGTTGGCGCG chr2R:18877804-18877924 69 4.97e-04 AGTATCAACA CACAAACA GCCACCACGG chr3R:9918976-9919096 28 4.97e-04 CAAAAACCTA CACAAACA CACACCTTTA chrX:10044028-10044148 100 4.97e-04 GGTGGTAACA CACAAACA GCAAACGCGG chr3R:9448508-9448628 27 4.97e-04 catatgtata tgtacaca gttgttgagt chr3R:20549127-20549247 57 5.31e-04 AATGTAACAA AGTAAATA ACGAGAGTCG chr2R:21082696-21082816 72 5.31e-04 GGAACAAGAA AGTAAATA TCTACAAAAA chr3L:19847092-19847212 19 6.41e-04 AAAAGTATTA TGCACATA CATACATTGG chr3R:25544165-25544285 96 6.41e-04 CTGGTAGCAA AATAAACA GGCAATACGA chrX:17294271-17294391 34 6.41e-04 agcatacaca aataaaca gcaacaatac chr2R:18667115-18667235 32 6.41e-04 GTCTTTGGAA AATAAACA CTTTCTGCTG chr3R:12716374-12716494 54 6.41e-04 CTGTTTGGAC AATAAACA CTGAAGTGAT chr3R:23947153-23947273 53 6.86e-04 TGTTTGCGTT GGTAAATA GTGACAAGTT chr3L:3078933-3079053 62 6.86e-04 TGTACATATT TACACACA ATTTACATTT chr3R:20263071-20263191 81 6.86e-04 ACTACCAAAT TACACACA ACCCGTCACC chr2R:13470239-13470359 72 6.86e-04 AAATAAGTTG GGTAAATA AATGCATAAA chr3R:31758942-31759062 22 6.86e-04 TTTTGACAGG GGTAAATA ATCGGGCTGG chr2L:1627911-1628031 66 7.84e-04 CAACAACAAC AACAAATA GTAGAATAGT chr2L:7685440-7685560 1 7.84e-04 . AACAAATA CCAAATGATA chr3R:20273700-20273820 99 7.84e-04 TAAATTATAC AACAAATA TTCCAACATT chr2R:14487702-14487822 105 7.84e-04 GTTAATCTTT AACAAATA TAACCTTG chr3R:12961053-12961173 53 7.84e-04 GATATCGTTC AGCACATA TCTTTACGAT chr3R:30193961-30194081 102 8.06e-04 ACAGCCACTG AACACACA TTGCGTATGG chr3R:5207512-5207632 95 8.06e-04 AAGAGGCCGA AACACACA AGTCCAAACA chr3L:18179941-18180061 19 9.32e-04 CTGCCTTTGG CGTACACA ATTACACGAG chr3L:6612788-6612908 71 9.32e-04 GAATTTCGTG CGTACACA AAGCGCCAGC chr3L:22847808-22847928 39 1.04e-03 TCAGCCGTGC TATAAATA GAAATTCAAC chr2R:9413322-9413442 36 1.04e-03 AAGGGTTATA TGTACATA TATACGCCCG chr2L:745885-746005 37 1.04e-03 GAAAGCGAAA CGCACATA AAGGGTGCCA chrX:16420169-16420289 21 1.04e-03 ACAAGTACAA TGTACATA TAGTTTTAAT chr2L:14395189-14395309 63 1.04e-03 TGATTTAGTT TATAAATA TTTCCCAACC chrX:19683060-19683180 99 1.08e-03 GGCGCTCTCT CACACACA CAAGAGCACC chr3L:10734650-10734770 9 1.08e-03 cacactca cacacaca TGAGCGGGCA chrX:6638301-6638421 88 1.08e-03 CGTATTTACA CACACACA CACAACAAAT chr3R:19223516-19223636 15 1.16e-03 ATCTTATCGC AGTACATA AAAAAGCGCA chr2R:12441333-12441453 94 1.16e-03 GATCGTGGCC AATAAATA TTTGGGCATC chr3R:6399418-6399538 17 1.16e-03 TTATCAGTTC AGTACATA ATCTTTATTG chr3L:14262929-14263049 1 1.21e-03 . TACACATA AGGAAACTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGYAAAYA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15480288-15480408 2e-05 30_[+2]_82 chr2L:4829149-4829269 2e-05 93_[+2]_19 chr2L:2864736-2864856 2e-05 31_[+2]_81 chr3R:29757339-29757459 2e-05 47_[+2]_65 chr3R:23284413-23284533 2e-05 7_[+2]_105 chr3L:483958-484078 2e-05 86_[+2]_26 chr2R:14031222-14031342 2e-05 60_[+2]_52 chr3R:30932214-30932334 2e-05 61_[+2]_51 chr3L:12392931-12393051 2e-05 41_[+2]_71 chr3R:26934634-26934754 2e-05 91_[+2]_21 chr2R:18485717-18485837 2e-05 38_[+2]_74 chr2L:5303726-5303846 4.1e-05 58_[+2]_54 chr3L:16429610-16429730 4.1e-05 55_[+2]_57 chr3L:17896102-17896222 4.1e-05 42_[+2]_70 chr2L:7387021-7387141 4.1e-05 98_[+2]_14 chr3L:1690837-1690957 5.7e-05 72_[+2]_40 chr3L:8835082-8835202 5.7e-05 38_[+2]_74 chr3L:3755829-3755949 5.7e-05 13_[+2]_99 chr3L:17006209-17006329 5.7e-05 108_[+2]_4 chr3L:11442068-11442188 5.7e-05 1_[+2]_111 chrX:3282085-3282205 9.9e-05 89_[+2]_23 chr3L:4025881-4026001 9.9e-05 39_[+2]_73 chr2R:6464932-6465052 9.9e-05 69_[+2]_43 chr3R:17966146-17966266 9.9e-05 40_[+2]_72 chr3R:23601545-23601665 9.9e-05 61_[+2]_51 chr2R:10395819-10395939 9.9e-05 64_[+2]_48 chr2L:21062747-21062867 9.9e-05 97_[+2]_15 chr2R:9214323-9214443 9.9e-05 107_[+2]_5 chr3L:15591309-15591429 0.00015 108_[+2]_4 chr2R:19125699-19125819 0.00015 16_[+2]_96 chr3L:12835653-12835773 0.00015 60_[+2]_52 chr2R:21549093-21549213 0.00015 104_[+2]_8 chr3R:11993407-11993527 0.00015 93_[+2]_19 chr2L:11210354-11210474 0.00015 48_[+2]_64 chr2L:1637995-1638115 0.00015 40_[+2]_72 chr3L:11286623-11286743 0.00015 47_[+2]_65 chr3R:6401073-6401193 0.00015 69_[+2]_43 chr3R:13446140-13446260 0.00015 40_[+2]_72 chr3L:8347516-8347636 0.00019 45_[+2]_67 chr2L:20390146-20390266 0.00019 66_[+2]_46 chr3L:13912890-13913010 0.00019 19_[+2]_93 chr3L:960706-960826 0.00019 30_[+2]_82 chr3R:27605774-27605894 0.00024 78_[+2]_34 chr2R:18605480-18605600 0.00024 80_[+2]_32 chr2L:19998308-19998428 0.00024 108_[+2]_4 chr3R:19613058-19613178 0.00024 94_[+2]_18 chr3L:19496179-19496299 0.00024 47_[+2]_65 chr2L:7215818-7215938 0.00024 48_[+2]_64 chr2R:22200011-22200131 0.00024 68_[+2]_44 chr2L:14307668-14307788 0.00024 15_[+2]_97 chr3R:6203146-6203266 0.00024 9_[+2]_103 chr2L:12509606-12509726 0.00024 67_[+2]_45 chr2L:18864240-18864360 0.00024 54_[+2]_58 chr2R:24746014-24746134 0.00028 106_[+2]_6 chrX:13088669-13088789 0.00028 5_[+2]_107 chr2L:3228846-3228966 0.00028 87_[+2]_25 chrX:12667149-12667269 0.00028 38_[+2]_74 chr2L:7528243-7528363 0.00028 62_[+2]_50 chr2L:6817496-6817616 0.00028 50_[+2]_62 chr3L:7000078-7000198 0.00028 27_[+2]_85 chr3R:9530034-9530154 0.00028 85_[+2]_27 chr3L:882078-882198 0.00036 62_[+2]_50 chr3L:16494914-16495034 0.00036 30_[+2]_82 chr3L:3082339-3082459 0.00036 26_[+2]_86 chr3R:9891691-9891811 0.00036 16_[+2]_96 chr3L:630836-630956 0.00036 2_[+2]_110 chr2L:18717494-18717614 0.00036 63_[+2]_49 chr2L:14396445-14396565 0.00036 95_[+2]_17 chr3L:2254456-2254576 0.00036 43_[+2]_69 chr2L:2861542-2861662 0.00041 81_[+2]_31 chr3R:14284439-14284559 0.00041 57_[+2]_55 chr3L:17808931-17809051 0.00041 91_[+2]_21 chrX:3869261-3869381 0.00041 84_[+2]_28 chr3R:31240167-31240287 0.00041 87_[+2]_25 chr3R:17759922-17760042 0.00041 102_[+2]_10 chr2R:23611937-23612057 0.00041 44_[+2]_68 chr3R:16211342-16211462 0.0005 85_[+2]_27 chr3R:23249130-23249250 0.0005 46_[+2]_66 chr2R:7253911-7254031 0.0005 36_[+2]_76 chr2R:18877804-18877924 0.0005 68_[+2]_44 chr3R:9918976-9919096 0.0005 27_[+2]_85 chrX:10044028-10044148 0.0005 99_[+2]_13 chr3R:9448508-9448628 0.0005 26_[+2]_86 chr3R:20549127-20549247 0.00053 56_[+2]_56 chr2R:21082696-21082816 0.00053 71_[+2]_41 chr3L:19847092-19847212 0.00064 18_[+2]_94 chr3R:25544165-25544285 0.00064 95_[+2]_17 chrX:17294271-17294391 0.00064 33_[+2]_79 chr2R:18667115-18667235 0.00064 31_[+2]_81 chr3R:12716374-12716494 0.00064 53_[+2]_59 chr3R:23947153-23947273 0.00069 52_[+2]_60 chr3L:3078933-3079053 0.00069 61_[+2]_51 chr3R:20263071-20263191 0.00069 80_[+2]_32 chr2R:13470239-13470359 0.00069 71_[+2]_41 chr3R:31758942-31759062 0.00069 21_[+2]_91 chr2L:1627911-1628031 0.00078 65_[+2]_47 chr2L:7685440-7685560 0.00078 [+2]_112 chr3R:20273700-20273820 0.00078 98_[+2]_14 chr2R:14487702-14487822 0.00078 104_[+2]_8 chr3R:12961053-12961173 0.00078 52_[+2]_60 chr3R:30193961-30194081 0.00081 101_[+2]_11 chr3R:5207512-5207632 0.00081 94_[+2]_18 chr3L:18179941-18180061 0.00093 18_[+2]_94 chr3L:6612788-6612908 0.00093 70_[+2]_42 chr3L:22847808-22847928 0.001 38_[+2]_74 chr2R:9413322-9413442 0.001 35_[+2]_77 chr2L:745885-746005 0.001 36_[+2]_76 chrX:16420169-16420289 0.001 20_[+2]_92 chr2L:14395189-14395309 0.001 62_[+2]_50 chrX:19683060-19683180 0.0011 98_[+2]_14 chr3L:10734650-10734770 0.0011 8_[+2]_104 chrX:6638301-6638421 0.0011 87_[+2]_25 chr3R:19223516-19223636 0.0012 14_[+2]_98 chr2R:12441333-12441453 0.0012 93_[+2]_19 chr3R:6399418-6399538 0.0012 16_[+2]_96 chr3L:14262929-14263049 0.0012 [+2]_112 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGYAAAYA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WGYAAAYA width=8 seqs=116 chr2R:15480288-15480408 ( 31) TGCAAACA 1 chr2L:4829149-4829269 ( 94) TGCAAACA 1 chr2L:2864736-2864856 ( 32) TGCAAACA 1 chr3R:29757339-29757459 ( 48) TGCAAACA 1 chr3R:23284413-23284533 ( 8) TGCAAACA 1 chr3L:483958-484078 ( 87) TGCAAACA 1 chr2R:14031222-14031342 ( 61) TGCAAACA 1 chr3R:30932214-30932334 ( 62) TGCAAACA 1 chr3L:12392931-12393051 ( 42) TGCAAACA 1 chr3R:26934634-26934754 ( 92) TGCAAACA 1 chr2R:18485717-18485837 ( 39) TGCAAACA 1 chr2L:5303726-5303846 ( 59) AGCAAACA 1 chr3L:16429610-16429730 ( 56) AGCAAACA 1 chr3L:17896102-17896222 ( 43) AGCAAACA 1 chr2L:7387021-7387141 ( 99) AGCAAACA 1 chr3L:1690837-1690957 ( 73) GGCAAACA 1 chr3L:8835082-8835202 ( 39) GGCAAACA 1 chr3L:3755829-3755949 ( 14) GGCAAACA 1 chr3L:17006209-17006329 ( 109) GGCAAACA 1 chr3L:11442068-11442188 ( 2) GGCAAACA 1 chrX:3282085-3282205 ( 90) CGCAAACA 1 chr3L:4025881-4026001 ( 40) CGCAAACA 1 chr2R:6464932-6465052 ( 70) TGTAAACA 1 chr3R:17966146-17966266 ( 41) TGTAAACA 1 chr3R:23601545-23601665 ( 62) CGCAAACA 1 chr2R:10395819-10395939 ( 65) TGTAAACA 1 chr2L:21062747-21062867 ( 98) TGTAAACA 1 chr2R:9214323-9214443 ( 108) CGCAAACA 1 chr3L:15591309-15591429 ( 109) TGCAAATA 1 chr2R:19125699-19125819 ( 17) AGTAAACA 1 chr3L:12835653-12835773 ( 61) AGTAAACA 1 chr2R:21549093-21549213 ( 105) TGCAAATA 1 chr3R:11993407-11993527 ( 94) TGCAAATA 1 chr2L:11210354-11210474 ( 49) AGTAAACA 1 chr2L:1637995-1638115 ( 41) TGCAAATA 1 chr3L:11286623-11286743 ( 48) TGCAAATA 1 chr3R:6401073-6401193 ( 70) TGCAAATA 1 chr3R:13446140-13446260 ( 41) TGCAAATA 1 chr3L:8347516-8347636 ( 46) TGCACACA 1 chr2L:20390146-20390266 ( 67) TACAAACA 1 chr3L:13912890-13913010 ( 20) TACAAACA 1 chr3L:960706-960826 ( 31) TACAAACA 1 chr3R:27605774-27605894 ( 79) AGCAAATA 1 chr2R:18605480-18605600 ( 81) GGTAAACA 1 chr2L:19998308-19998428 ( 109) GGTAAACA 1 chr3R:19613058-19613178 ( 95) GGTAAACA 1 chr3L:19496179-19496299 ( 48) GGTAAACA 1 chr2L:7215818-7215938 ( 49) AGCAAATA 1 chr2R:22200011-22200131 ( 69) AGCAAATA 1 chr2L:14307668-14307788 ( 16) AGCAAATA 1 chr3R:6203146-6203266 ( 10) GGTAAACA 1 chr2L:12509606-12509726 ( 68) AGCAAATA 1 chr2L:18864240-18864360 ( 55) GGTAAACA 1 chr2R:24746014-24746134 ( 107) AACAAACA 1 chrX:13088669-13088789 ( 6) AGCACACA 1 chr2L:3228846-3228966 ( 88) AACAAACA 1 chrX:12667149-12667269 ( 39) AACAAACA 1 chr2L:7528243-7528363 ( 63) AGCACACA 1 chr2L:6817496-6817616 ( 51) AGCACACA 1 chr3L:7000078-7000198 ( 28) AACAAACA 1 chr3R:9530034-9530154 ( 86) AACAAACA 1 chr3L:882078-882198 ( 63) GACAAACA 1 chr3L:16494914-16495034 ( 31) GACAAACA 1 chr3L:3082339-3082459 ( 27) GGCACACA 1 chr3R:9891691-9891811 ( 17) GGCACACA 1 chr3L:630836-630956 ( 3) GGCACACA 1 chr2L:18717494-18717614 ( 64) GACAAACA 1 chr2L:14396445-14396565 ( 96) GACAAACA 1 chr3L:2254456-2254576 ( 44) CGTAAACA 1 chr2L:2861542-2861662 ( 82) TGTAAATA 1 chr3R:14284439-14284559 ( 58) TGTAAATA 1 chr3L:17808931-17809051 ( 92) TGTAAATA 1 chrX:3869261-3869381 ( 85) TGTAAATA 1 chr3R:31240167-31240287 ( 88) TGTAAATA 1 chr3R:17759922-17760042 ( 103) TGTAAATA 1 chr2R:23611937-23612057 ( 45) TGTAAATA 1 chr3R:16211342-16211462 ( 86) CGCACACA 1 chr3R:23249130-23249250 ( 47) TATAAACA 1 chr2R:7253911-7254031 ( 37) CACAAACA 1 chr2R:18877804-18877924 ( 69) CACAAACA 1 chr3R:9918976-9919096 ( 28) CACAAACA 1 chrX:10044028-10044148 ( 100) CACAAACA 1 chr3R:9448508-9448628 ( 27) TGTACACA 1 chr3R:20549127-20549247 ( 57) AGTAAATA 1 chr2R:21082696-21082816 ( 72) AGTAAATA 1 chr3L:19847092-19847212 ( 19) TGCACATA 1 chr3R:25544165-25544285 ( 96) AATAAACA 1 chrX:17294271-17294391 ( 34) AATAAACA 1 chr2R:18667115-18667235 ( 32) AATAAACA 1 chr3R:12716374-12716494 ( 54) AATAAACA 1 chr3R:23947153-23947273 ( 53) GGTAAATA 1 chr3L:3078933-3079053 ( 62) TACACACA 1 chr3R:20263071-20263191 ( 81) TACACACA 1 chr2R:13470239-13470359 ( 72) GGTAAATA 1 chr3R:31758942-31759062 ( 22) GGTAAATA 1 chr2L:1627911-1628031 ( 66) AACAAATA 1 chr2L:7685440-7685560 ( 1) AACAAATA 1 chr3R:20273700-20273820 ( 99) AACAAATA 1 chr2R:14487702-14487822 ( 105) AACAAATA 1 chr3R:12961053-12961173 ( 53) AGCACATA 1 chr3R:30193961-30194081 ( 102) AACACACA 1 chr3R:5207512-5207632 ( 95) AACACACA 1 chr3L:18179941-18180061 ( 19) CGTACACA 1 chr3L:6612788-6612908 ( 71) CGTACACA 1 chr3L:22847808-22847928 ( 39) TATAAATA 1 chr2R:9413322-9413442 ( 36) TGTACATA 1 chr2L:745885-746005 ( 37) CGCACATA 1 chrX:16420169-16420289 ( 21) TGTACATA 1 chr2L:14395189-14395309 ( 63) TATAAATA 1 chrX:19683060-19683180 ( 99) CACACACA 1 chr3L:10734650-10734770 ( 9) CACACACA 1 chrX:6638301-6638421 ( 88) CACACACA 1 chr3R:19223516-19223636 ( 15) AGTACATA 1 chr2R:12441333-12441453 ( 94) AATAAATA 1 chr3R:6399418-6399538 ( 17) AGTACATA 1 chr3L:14262929-14263049 ( 1) TACACATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGYAAAYA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.17466 E= 6.3e-016 10 -67 -24 42 10 -1350 169 -1350 -1350 156 -1350 36 179 -1350 -1350 -1350 142 3 -1350 -1350 179 -1350 -1350 -1350 -1350 159 -1350 28 179 -1350 -1350 -1350 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGYAAAYA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 116 E= 6.3e-016 0.310345 0.137931 0.181034 0.370690 0.310345 0.000000 0.689655 0.000000 0.000000 0.646552 0.000000 0.353448 1.000000 0.000000 0.000000 0.000000 0.775862 0.224138 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.663793 0.000000 0.336207 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WGYAAAYA MEME-2 regular expression -------------------------------------------------------------------------------- [TA][GA][CT]A[AC]A[CT]A -------------------------------------------------------------------------------- Time 13.89 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCATAAA MEME-3 width = 8 sites = 30 llr = 266 E-value = 1.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCATAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2:1a3aaa pos.-specific C 2a9::::: probability G 6::::::: matrix T ::::7::: bits 2.2 * 2.0 * 1.8 *** *** 1.6 *** *** Relative 1.3 *** *** Entropy 1.1 *** *** (12.8 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCATAAA consensus A A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3381987-3382107 3 2.02e-05 TG GCCATAAA GCCCACGAGA chr3L:1169732-1169852 77 2.02e-05 GCTCGGGCCT GCCATAAA ATAAATTACT chr3L:19847092-19847212 72 2.02e-05 CTGTTTGTCT GCCATAAA AACAAAGCAA chr3R:23284413-23284533 110 2.02e-05 TATTTACCAG GCCATAAA GCG chr2R:21082696-21082816 28 2.02e-05 TTCGAAAAGA GCCATAAA TCAAATATTG chr3R:26185391-26185511 40 2.02e-05 CCTAAATCAA GCCATAAA TGCCGGTCAT chrX:3869261-3869381 67 2.02e-05 TTCCCAGGCA GCCATAAA TCTATCCAGC chr3R:23139108-23139228 51 2.02e-05 CTGGAAGTCC GCCATAAA AGCCCAATAG chr3R:6399418-6399538 49 2.02e-05 GCAATCGCTG GCCATAAA TTTTCGTGCT chr2L:10146886-10147006 46 2.02e-05 TAAATCCTTG GCCATAAA TCAGGGAATA chr3R:13441847-13441967 50 2.02e-05 CCGTCAGTCC GCCATAAA ACAAGACTCT chr2R:15480288-15480408 108 4.15e-05 TGTTGTGCTA GCCAAAAA AAGTT chr3L:18020980-18021100 62 4.15e-05 GTTCGCCATC GCCAAAAA AGCTTCTCGC chr2L:17433200-17433320 58 4.15e-05 ACCCCAAAAA GCCAAAAA CAACAGCGTA chr3R:23846307-23846427 15 4.15e-05 TTGACTGACA GCCAAAAA ACTTCTTGGG chr2R:6544008-6544128 18 6.22e-05 ATGCTGACAC CCCATAAA ATATTTAAGT chr3R:12716374-12716494 73 6.22e-05 TGAAGTGATC CCCATAAA CAATTGTTTA chr3R:7779768-7779888 98 8.96e-05 ATTCAGCTGT ACCATAAA AACTTAAAAA chr2L:14405205-14405325 36 8.96e-05 TTATGGTCTC ACCATAAA ATGTCATAAA chr3R:28588538-28588658 10 8.96e-05 ATGAGCGTA ACCATAAA AGCGTCTTTT chr2R:17694737-17694857 66 8.96e-05 CTTTATATTA ACCATAAA ACCCAATCAG chr2R:11426861-11426981 65 8.96e-05 TTTACAATGC ACCATAAA TCAAAGGCAA chrX:19306714-19306834 60 8.96e-05 ATATTCACAC ACCATAAA GGAGTATTTG chrX:1387329-1387449 52 1.11e-04 AATTGTGGTC CCCAAAAA GCAAACTTTG chr2R:19449660-19449780 12 1.11e-04 GCTCTGCCAC CCCAAAAA GCCCCCCTGC chr2R:22205670-22205790 21 1.11e-04 TGAAAACGCG CCCAAAAA ATCTCACTTT chr3R:31240167-31240287 25 1.11e-04 AAATGTGTAA CCCAAAAA CGTAGGCAAG chr3R:16211342-16211462 31 1.40e-04 GCGCAACGCC accaaaaa taaccaaacc chr2L:3779501-3779621 17 1.67e-04 TACCCTAGGA GCAATAAA GAATACAACG chr3R:20549127-20549247 18 1.67e-04 GAAATGCAAC GCAATAAA CGACTTTGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3381987-3382107 2e-05 2_[+3]_110 chr3L:1169732-1169852 2e-05 76_[+3]_36 chr3L:19847092-19847212 2e-05 71_[+3]_41 chr3R:23284413-23284533 2e-05 109_[+3]_3 chr2R:21082696-21082816 2e-05 27_[+3]_85 chr3R:26185391-26185511 2e-05 39_[+3]_73 chrX:3869261-3869381 2e-05 66_[+3]_46 chr3R:23139108-23139228 2e-05 50_[+3]_62 chr3R:6399418-6399538 2e-05 48_[+3]_64 chr2L:10146886-10147006 2e-05 45_[+3]_67 chr3R:13441847-13441967 2e-05 49_[+3]_63 chr2R:15480288-15480408 4.1e-05 107_[+3]_5 chr3L:18020980-18021100 4.1e-05 61_[+3]_51 chr2L:17433200-17433320 4.1e-05 57_[+3]_55 chr3R:23846307-23846427 4.1e-05 14_[+3]_98 chr2R:6544008-6544128 6.2e-05 17_[+3]_95 chr3R:12716374-12716494 6.2e-05 72_[+3]_40 chr3R:7779768-7779888 9e-05 97_[+3]_15 chr2L:14405205-14405325 9e-05 35_[+3]_77 chr3R:28588538-28588658 9e-05 9_[+3]_103 chr2R:17694737-17694857 9e-05 65_[+3]_47 chr2R:11426861-11426981 9e-05 64_[+3]_48 chrX:19306714-19306834 9e-05 59_[+3]_53 chrX:1387329-1387449 0.00011 51_[+3]_61 chr2R:19449660-19449780 0.00011 11_[+3]_101 chr2R:22205670-22205790 0.00011 20_[+3]_92 chr3R:31240167-31240287 0.00011 24_[+3]_88 chr3R:16211342-16211462 0.00014 30_[+3]_82 chr2L:3779501-3779621 0.00017 16_[+3]_96 chr3R:20549127-20549247 0.00017 17_[+3]_95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCATAAA width=8 seqs=30 chr3L:3381987-3382107 ( 3) GCCATAAA 1 chr3L:1169732-1169852 ( 77) GCCATAAA 1 chr3L:19847092-19847212 ( 72) GCCATAAA 1 chr3R:23284413-23284533 ( 110) GCCATAAA 1 chr2R:21082696-21082816 ( 28) GCCATAAA 1 chr3R:26185391-26185511 ( 40) GCCATAAA 1 chrX:3869261-3869381 ( 67) GCCATAAA 1 chr3R:23139108-23139228 ( 51) GCCATAAA 1 chr3R:6399418-6399538 ( 49) GCCATAAA 1 chr2L:10146886-10147006 ( 46) GCCATAAA 1 chr3R:13441847-13441967 ( 50) GCCATAAA 1 chr2R:15480288-15480408 ( 108) GCCAAAAA 1 chr3L:18020980-18021100 ( 62) GCCAAAAA 1 chr2L:17433200-17433320 ( 58) GCCAAAAA 1 chr3R:23846307-23846427 ( 15) GCCAAAAA 1 chr2R:6544008-6544128 ( 18) CCCATAAA 1 chr3R:12716374-12716494 ( 73) CCCATAAA 1 chr3R:7779768-7779888 ( 98) ACCATAAA 1 chr2L:14405205-14405325 ( 36) ACCATAAA 1 chr3R:28588538-28588658 ( 10) ACCATAAA 1 chr2R:17694737-17694857 ( 66) ACCATAAA 1 chr2R:11426861-11426981 ( 65) ACCATAAA 1 chrX:19306714-19306834 ( 60) ACCATAAA 1 chrX:1387329-1387449 ( 52) CCCAAAAA 1 chr2R:19449660-19449780 ( 12) CCCAAAAA 1 chr2R:22205670-22205790 ( 21) CCCAAAAA 1 chr3R:31240167-31240287 ( 25) CCCAAAAA 1 chr3R:16211342-16211462 ( 31) ACCAAAAA 1 chr2L:3779501-3779621 ( 17) GCAATAAA 1 chr3R:20549127-20549247 ( 18) GCAATAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.8025 E= 1.0e+001 -31 -14 140 -1155 -1155 218 -1155 -1155 -212 209 -1155 -1155 179 -1155 -1155 -1155 5 -1155 -1155 134 179 -1155 -1155 -1155 179 -1155 -1155 -1155 179 -1155 -1155 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 1.0e+001 0.233333 0.200000 0.566667 0.000000 0.000000 1.000000 0.000000 0.000000 0.066667 0.933333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.300000 0.000000 0.000000 0.700000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCATAAA MEME-3 regular expression -------------------------------------------------------------------------------- [GAC]CCA[TA]AAA -------------------------------------------------------------------------------- Time 19.76 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTATGGC MEME-4 width = 8 sites = 14 llr = 140 E-value = 1.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTATGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::8:::: pos.-specific C :::::::a probability G :2:::aa: matrix T a8a2a::: bits 2.2 *** 2.0 *** 1.8 * * **** 1.6 * * **** Relative 1.3 * * **** Entropy 1.1 ******** (14.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTATGGC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:15846376-15846496 76 1.70e-05 TAGTATAAAC TTTATGGC TTACTATTTA chr3L:18994717-18994837 66 1.70e-05 CTATGTGTAG TTTATGGC AGCCTCTTCA chr3L:1169732-1169852 57 1.70e-05 TCTATGTGGG TTTATGGC CTGCTCGGGC chr2R:9077828-9077948 36 1.70e-05 TGCTGAGGGG TTTATGGC CCTTCTGAAA chr3R:23284413-23284533 30 1.70e-05 ACTGATACAC TTTATGGC AATAGCGAAG chr2R:22205670-22205790 87 1.70e-05 TTATGAATAT TTTATGGC CTTTGAGTCA chr3R:28588538-28588658 77 1.70e-05 CAATGCCAAT TTTATGGC TGCCCCGGCC chr3R:23139108-23139228 73 1.70e-05 CAATAGCTCG TTTATGGC GCTAATCAAT chr2L:11210354-11210474 66 3.01e-05 ACAATCTGAT TGTATGGC TTAGATAATA chr2R:18667115-18667235 55 3.01e-05 TGCTGATCTA TGTATGGC TCGGGCCTAA chr2L:14396445-14396565 42 3.01e-05 GAAGGCAAAG TGTATGGC TCACGCACTC chr3L:17006209-17006329 46 4.62e-05 ATCTCAGGTG TTTTTGGC CATAGTCATA chr2L:10499787-10499907 97 4.62e-05 TCAAAATTTG TTTTTGGC CCGCATGACG chr2L:6817496-6817616 25 4.62e-05 TTTTTAATGC TTTTTGGC ATACGTCTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15846376-15846496 1.7e-05 75_[+4]_37 chr3L:18994717-18994837 1.7e-05 65_[+4]_47 chr3L:1169732-1169852 1.7e-05 56_[+4]_56 chr2R:9077828-9077948 1.7e-05 35_[+4]_77 chr3R:23284413-23284533 1.7e-05 29_[+4]_83 chr2R:22205670-22205790 1.7e-05 86_[+4]_26 chr3R:28588538-28588658 1.7e-05 76_[+4]_36 chr3R:23139108-23139228 1.7e-05 72_[+4]_40 chr2L:11210354-11210474 3e-05 65_[+4]_47 chr2R:18667115-18667235 3e-05 54_[+4]_58 chr2L:14396445-14396565 3e-05 41_[+4]_71 chr3L:17006209-17006329 4.6e-05 45_[+4]_67 chr2L:10499787-10499907 4.6e-05 96_[+4]_16 chr2L:6817496-6817616 4.6e-05 24_[+4]_88 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTATGGC width=8 seqs=14 chr2R:15846376-15846496 ( 76) TTTATGGC 1 chr3L:18994717-18994837 ( 66) TTTATGGC 1 chr3L:1169732-1169852 ( 57) TTTATGGC 1 chr2R:9077828-9077948 ( 36) TTTATGGC 1 chr3R:23284413-23284533 ( 30) TTTATGGC 1 chr2R:22205670-22205790 ( 87) TTTATGGC 1 chr3R:28588538-28588658 ( 77) TTTATGGC 1 chr3R:23139108-23139228 ( 73) TTTATGGC 1 chr2L:11210354-11210474 ( 66) TGTATGGC 1 chr2R:18667115-18667235 ( 55) TGTATGGC 1 chr2L:14396445-14396565 ( 42) TGTATGGC 1 chr3L:17006209-17006329 ( 46) TTTTTGGC 1 chr2L:10499787-10499907 ( 97) TTTTTGGC 1 chr2L:6817496-6817616 ( 25) TTTTTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5839 E= 1.8e+003 -1045 -1045 -1045 186 -1045 -1045 0 151 -1045 -1045 -1045 186 144 -1045 -1045 -37 -1045 -1045 -1045 186 -1045 -1045 222 -1045 -1045 -1045 222 -1045 -1045 218 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.8e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.214286 0.785714 0.000000 0.000000 0.000000 1.000000 0.785714 0.000000 0.000000 0.214286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGGC MEME-4 regular expression -------------------------------------------------------------------------------- T[TG]T[AT]TGGC -------------------------------------------------------------------------------- Time 25.58 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGYTGCT MEME-5 width = 8 sites = 14 llr = 139 E-value = 8.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGYTGCT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :3:4::a: probability G ::a::a:: matrix T a7:6a::a bits 2.2 * ** 2.0 * ** 1.8 * * **** 1.6 * * **** Relative 1.3 * * **** Entropy 1.1 ******** (14.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTGTTGCT consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYTGCT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:3323530-3323650 97 1.61e-05 AGTTTACCAC TTGTTGCT CCTCATATTT chrX:3282085-3282205 56 1.61e-05 CAGTTGACAG TTGTTGCT CAATATTTGC chr2R:24746014-24746134 82 1.61e-05 TTGCCAACAT TTGTTGCT CCGTTCGGGC chr2R:11031542-11031662 104 1.61e-05 CCGCGGCAAG TTGTTGCT CCCcctctg chr2L:12025616-12025736 94 1.61e-05 AAGATGGAAC TTGTTGCT ATCGCCACTC chr3R:13441847-13441967 24 1.61e-05 GTAACAAAGA TTGTTGCT TTTGGCACCC chr3R:7779768-7779888 37 2.90e-05 GTTCATGCGC TTGCTGCT ATAACTTAAC chr3L:630836-630956 101 2.90e-05 TTCTGAATGG TTGCTGCT GGCGTTATTG chr2R:11423584-11423704 32 2.90e-05 GATAAAGTAG TTGCTGCT ACCTGAAAAT chr3R:30932214-30932334 31 2.90e-05 TCATTACTAT TTGCTGCT GGTCCGCTTC chr2R:15846376-15846496 25 4.19e-05 GATTACTCAT TCGTTGCT TGTCTTTTGC chr3R:26185391-26185511 70 4.19e-05 ATGACACAAT TCGTTGCT ATATAGACTT chr2R:14360164-14360284 39 5.21e-05 TGGGCCATTT TCGCTGCT GTGTGAGGTT chr3R:9491297-9491417 29 5.21e-05 CAAAGTTAAC TCGCTGCT GGAGCGCGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYTGCT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:3323530-3323650 1.6e-05 96_[+5]_16 chrX:3282085-3282205 1.6e-05 55_[+5]_57 chr2R:24746014-24746134 1.6e-05 81_[+5]_31 chr2R:11031542-11031662 1.6e-05 103_[+5]_9 chr2L:12025616-12025736 1.6e-05 93_[+5]_19 chr3R:13441847-13441967 1.6e-05 23_[+5]_89 chr3R:7779768-7779888 2.9e-05 36_[+5]_76 chr3L:630836-630956 2.9e-05 100_[+5]_12 chr2R:11423584-11423704 2.9e-05 31_[+5]_81 chr3R:30932214-30932334 2.9e-05 30_[+5]_82 chr2R:15846376-15846496 4.2e-05 24_[+5]_88 chr3R:26185391-26185511 4.2e-05 69_[+5]_43 chr2R:14360164-14360284 5.2e-05 38_[+5]_74 chr3R:9491297-9491417 5.2e-05 28_[+5]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYTGCT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGYTGCT width=8 seqs=14 chr2L:3323530-3323650 ( 97) TTGTTGCT 1 chrX:3282085-3282205 ( 56) TTGTTGCT 1 chr2R:24746014-24746134 ( 82) TTGTTGCT 1 chr2R:11031542-11031662 ( 104) TTGTTGCT 1 chr2L:12025616-12025736 ( 94) TTGTTGCT 1 chr3R:13441847-13441967 ( 24) TTGTTGCT 1 chr3R:7779768-7779888 ( 37) TTGCTGCT 1 chr3L:630836-630956 ( 101) TTGCTGCT 1 chr2R:11423584-11423704 ( 32) TTGCTGCT 1 chr3R:30932214-30932334 ( 31) TTGCTGCT 1 chr2R:15846376-15846496 ( 25) TCGTTGCT 1 chr3R:26185391-26185511 ( 70) TCGTTGCT 1 chr2R:14360164-14360284 ( 39) TCGCTGCT 1 chr3R:9491297-9491417 ( 29) TCGCTGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYTGCT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5839 E= 8.0e+003 -1045 -1045 -1045 186 -1045 38 -1045 137 -1045 -1045 222 -1045 -1045 96 -1045 105 -1045 -1045 -1045 186 -1045 -1045 222 -1045 -1045 218 -1045 -1045 -1045 -1045 -1045 186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYTGCT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 8.0e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.285714 0.000000 0.714286 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.000000 0.571429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGYTGCT MEME-5 regular expression -------------------------------------------------------------------------------- T[TC]G[TC]TGCT -------------------------------------------------------------------------------- Time 31.35 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30874764-30874884 3.92e-01 120 chr3R:23846307-23846427 2.26e-02 14_[+3(4.15e-05)]_98 chr2L:14395189-14395309 3.96e-02 45_[+1(6.46e-05)]_67 chrX:15602558-15602678 4.19e-02 28_[+1(2.86e-05)]_84 chr3L:4088886-4089006 9.90e-01 120 chr3R:22067382-22067502 3.14e-02 42_[+4(5.87e-05)]_70 chr2R:23611937-23612057 9.78e-03 120 chr3R:13320011-13320131 3.64e-03 79_[+1(4.43e-05)]_33 chr2R:18485717-18485837 4.81e-02 38_[+2(2.02e-05)]_74 chr3R:17759922-17760042 5.62e-02 120 chr3R:13446140-13446260 1.20e-01 120 chr3R:9530034-9530154 3.91e-02 120 chr3R:12961053-12961173 8.94e-02 120 chrX:16420169-16420289 1.12e-01 71_[+5(8.16e-05)]_41 chr3R:18903022-18903142 2.76e-01 120 chrX:18511046-18511166 6.14e-01 120 chr3R:13441847-13441967 4.96e-05 23_[+5(1.61e-05)]_18_[+3(2.02e-05)]_\ 63 chr3R:30934043-30934163 1.39e-01 30_[+1(4.43e-05)]_82 chr3R:17007470-17007590 7.95e-02 120 chr3R:9448508-9448628 4.51e-02 120 chr3L:2532547-2532667 3.17e-01 120 chr2R:9214323-9214443 1.42e-02 70_[+1(9.12e-05)]_17_[+1(6.46e-05)]_\ 4_[+2(9.86e-05)]_5 chr3R:19571332-19571452 3.29e-02 120 chr3L:14109988-14110108 4.65e-01 120 chr3L:18304574-18304694 7.90e-01 120 chr3L:6998780-6998900 6.54e-01 120 chr2L:20399315-20399435 3.61e-01 120 chr2L:1617491-1617611 3.42e-01 120 chr2L:18864240-18864360 6.31e-02 120 chrX:10044028-10044148 3.61e-01 120 chr3R:29978775-29978895 7.59e-01 120 chr2R:20963447-20963567 9.94e-01 120 chr2L:12509606-12509726 1.67e-01 120 chr3L:7000078-7000198 8.32e-02 120 chr2R:9269490-9269610 1.68e-01 120 chr2L:18625130-18625250 1.52e-01 120 chr3L:2254456-2254576 8.37e-02 120 chr3L:15597180-15597300 2.49e-01 120 chrX:19306714-19306834 3.89e-02 59_[+3(8.96e-05)]_53 chr2L:7387021-7387141 5.67e-02 98_[+2(4.15e-05)]_14 chr2L:12025616-12025736 1.31e-01 93_[+5(1.61e-05)]_19 chr2L:10146886-10147006 1.31e-02 45_[+3(2.02e-05)]_67 chr2R:22614290-22614410 7.94e-01 120 chr3R:26934634-26934754 6.13e-03 91_[+2(2.02e-05)]_21 chrX:2861066-2861186 4.77e-01 120 chr2L:6817496-6817616 6.97e-03 24_[+4(4.62e-05)]_88 chr3L:11107574-11107694 1.06e-01 39_[+1(2.86e-05)]_73 chr2L:17433200-17433320 8.21e-02 57_[+3(4.15e-05)]_55 chr3R:5207512-5207632 2.37e-02 120 chr3R:6399418-6399538 1.31e-03 48_[+3(2.02e-05)]_64 chr3R:6203146-6203266 2.72e-01 120 chr3R:30193961-30194081 2.93e-01 120 chr3R:6414575-6414695 3.47e-01 120 chr3R:12657103-12657223 5.63e-02 73_[+1(9.12e-05)]_39 chr3R:23139108-23139228 1.97e-04 50_[+3(2.02e-05)]_14_[+4(1.70e-05)]_\ 40 chr3L:12392931-12393051 5.84e-03 41_[+2(2.02e-05)]_71 chr2L:7528243-7528363 2.09e-01 120 chr2R:12441333-12441453 6.52e-05 68_[+1(6.46e-05)]_44 chr2L:14307668-14307788 3.92e-03 66_[+1(6.46e-05)]_46 chr2R:11426861-11426981 2.34e-02 64_[+3(8.96e-05)]_48 chr2L:323088-323208 2.47e-02 120 chr3R:30932214-30932334 6.54e-05 30_[+5(2.90e-05)]_11_[+1(2.86e-05)]_\ 4_[+2(2.02e-05)]_51 chr3R:31240167-31240287 2.99e-04 48_[+1(1.25e-05)]_64 chr2L:9010458-9010578 3.55e-01 120 chr2R:17694737-17694857 1.26e-01 65_[+3(8.96e-05)]_47 chrX:3869261-3869381 1.21e-04 66_[+3(2.02e-05)]_46 chr2L:425614-425734 2.40e-02 120 chr2L:21062747-21062867 1.18e-01 97_[+2(9.86e-05)]_15 chrX:12667149-12667269 2.76e-02 120 chr3R:19467597-19467717 1.92e-02 66_[+1(6.46e-05)]_46 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chr3R:10186183-10186303 9.04e-02 120 chr2L:8148770-8148890 4.01e-01 120 chrX:12241195-12241315 2.14e-02 110_[+1(2.86e-05)]_2 chr3R:6401073-6401193 1.51e-01 120 chr2R:6871330-6871450 1.55e-01 120 chr3L:7349478-7349598 5.70e-02 120 chr2L:7215818-7215938 4.11e-02 120 chr3L:6612788-6612908 3.10e-02 120 chr3R:23601545-23601665 5.61e-02 61_[+2(9.86e-05)]_51 chr2L:3748813-3748933 5.83e-02 120 chr3R:11178477-11178597 2.28e-02 66_[+1(6.46e-05)]_46 chrX:10462080-10462200 3.48e-01 120 chr2L:3228846-3228966 2.42e-03 120 chr2L:4861665-4861785 2.21e-01 120 chr2R:7253911-7254031 1.95e-01 120 chrX:19261888-19262008 8.61e-01 120 chr2R:11423584-11423704 5.09e-03 31_[+5(2.90e-05)]_81 chr2R:6544008-6544128 1.24e-01 17_[+3(6.22e-05)]_95 chr3R:14026655-14026775 9.78e-01 120 chr2R:14487702-14487822 9.92e-02 120 chr3R:18243734-18243854 2.10e-01 120 chr2L:10499787-10499907 1.91e-02 96_[+4(4.62e-05)]_16 chr2L:18717494-18717614 3.38e-01 120 chr3R:28588538-28588658 6.60e-05 9_[+3(8.96e-05)]_59_[+4(1.70e-05)]_\ 36 chr3R:17966146-17966266 1.14e-02 40_[+2(9.86e-05)]_72 chrX:14727709-14727829 1.42e-01 120 chr2R:14031222-14031342 8.79e-03 60_[+2(2.02e-05)]_52 chrX:6638301-6638421 1.85e-02 120 chr3R:29066436-29066556 6.58e-02 120 chr3R:29651594-29651714 1.48e-01 120 chrX:6310559-6310679 4.82e-01 120 chr3L:19496179-19496299 8.04e-03 120 chr2R:18667115-18667235 8.06e-04 54_[+4(3.01e-05)]_58 chr2R:21082696-21082816 1.70e-02 27_[+3(2.02e-05)]_85 chr3R:19613058-19613178 2.97e-02 120 chrX:17294271-17294391 7.33e-02 120 chr2R:22205670-22205790 2.67e-03 86_[+4(1.70e-05)]_26 chr2L:892577-892697 8.24e-01 120 chr3L:21192119-21192239 6.24e-02 120 chr2L:20016531-20016651 3.83e-01 120 chr3R:25544165-25544285 2.60e-01 120 chr2R:19449660-19449780 2.73e-01 120 chr3L:11286623-11286743 1.32e-02 120 chr2R:12670139-12670259 8.83e-01 120 chr2R:16289302-16289422 7.68e-01 120 chr2L:5064111-5064231 2.37e-02 46_[+1(6.46e-05)]_66 chrX:13088669-13088789 1.32e-03 120 chr2L:5303726-5303846 6.46e-02 58_[+2(4.15e-05)]_54 chr3L:18179941-18180061 1.26e-02 120 chr2R:17714548-17714668 1.75e-01 120 chr2L:19998308-19998428 1.60e-02 120 chr3R:20549127-20549247 8.45e-02 120 chr3L:2469773-2469893 2.93e-02 120 chr3L:960706-960826 1.67e-03 82_[+1(2.86e-05)]_30 chr3L:20088947-20089067 3.74e-01 120 chr2R:18605480-18605600 6.73e-05 57_[+1(1.25e-05)]_3_[+4(5.87e-05)]_\ 44 chr3L:779149-779269 5.68e-01 120 chr3L:17006209-17006329 1.83e-03 45_[+4(4.62e-05)]_55_[+2(5.71e-05)]_\ 4 chr3L:13912890-13913010 3.33e-03 120 chr3L:10734650-10734770 9.25e-01 120 chr3L:8683927-8684047 6.62e-01 120 chr2R:13470239-13470359 7.23e-02 120 chr2R:6464932-6465052 1.77e-01 69_[+2(9.86e-05)]_43 chr3L:22276793-22276913 9.74e-01 120 chrX:5917114-5917234 4.95e-01 120 chr2L:1637995-1638115 5.15e-03 120 chr3L:18020980-18021100 2.36e-02 61_[+3(4.15e-05)]_51 chr3L:1880811-1880931 8.79e-01 120 chr3L:483958-484078 8.04e-02 86_[+2(2.02e-05)]_26 chr2L:128289-128409 5.43e-01 120 chr3L:630836-630956 4.25e-03 100_[+5(2.90e-05)]_12 chrX:1387329-1387449 1.24e-03 70_[+1(2.86e-05)]_42 chr2R:17721593-17721713 5.20e-01 120 chr3L:9095198-9095318 3.97e-01 120 chr2L:12464236-12464356 9.25e-01 120 chr2R:12729311-12729431 8.78e-03 120 chr3L:11402416-11402536 9.64e-01 120 chr3R:23284413-23284533 2.74e-06 7_[+2(2.02e-05)]_14_[+4(1.70e-05)]_\ 72_[+3(2.02e-05)]_3 chr3R:29757339-29757459 4.52e-02 47_[+2(2.02e-05)]_57_[+2(5.71e-05)] chr2R:10079927-10080047 3.46e-01 120 chr3R:9891691-9891811 1.87e-01 120 chr2L:11210354-11210474 1.32e-03 65_[+4(3.01e-05)]_47 chr2L:3779501-3779621 1.06e-02 120 chr3L:11085956-11086076 3.36e-01 120 chr2R:9077828-9077948 4.96e-02 35_[+4(1.70e-05)]_77 chr2L:14405205-14405325 4.37e-02 35_[+3(8.96e-05)]_77 chr2R:14360164-14360284 2.41e-01 38_[+5(5.21e-05)]_74 chr3R:27605774-27605894 1.24e-01 120 chr3L:3082339-3082459 1.62e-02 104_[+1(4.43e-05)]_8 chr3L:20664113-20664233 2.39e-03 79_[+1(9.12e-05)]_6_[+1(2.86e-05)]_\ 19 chr3R:22108480-22108600 9.67e-01 120 chr3R:23249130-23249250 1.43e-01 120 chr3R:18740007-18740127 2.34e-01 30_[+1(9.12e-05)]_82 chr3R:18315419-18315539 4.97e-01 120 chr3R:20273700-20273820 1.04e-01 120 chr2R:12871792-12871912 1.27e-01 120 chr2L:20390146-20390266 2.81e-01 120 chr3R:16211342-16211462 1.21e-01 120 chr3R:20263071-20263191 4.71e-01 120 chr2R:9060138-9060258 2.57e-01 120 chr2L:6821798-6821918 9.97e-01 120 chr3L:3755829-3755949 2.15e-01 13_[+2(5.71e-05)]_99 chr3R:11993407-11993527 1.12e-01 120 chr3L:1093116-1093236 9.00e-01 120 chr3L:8835082-8835202 6.11e-03 22_[+1(9.12e-05)]_8_[+2(5.71e-05)]_\ 74 chr3L:17808931-17809051 3.14e-01 120 chr2R:23378304-23378424 8.59e-02 120 chr2L:12498670-12498790 1.51e-02 37_[+5(1.61e-05)]_55_[+5(1.61e-05)]_\ 12 chr3L:14545843-14545963 3.30e-01 120 chr3L:19847092-19847212 7.30e-04 71_[+3(2.02e-05)]_41 chr2R:21549093-21549213 3.29e-02 120 chr2R:24746014-24746134 2.54e-03 81_[+5(1.61e-05)]_31 chr3L:12835653-12835773 1.96e-01 120 chr2R:19125699-19125819 7.82e-02 120 chr3L:4025881-4026001 4.80e-03 39_[+2(9.86e-05)]_73 chr2R:9413322-9413442 4.86e-01 120 chr3L:22847808-22847928 4.41e-01 120 chr3L:8347516-8347636 1.80e-01 120 chr3L:8853022-8853142 4.56e-01 120 chr3R:11338419-11338539 6.79e-01 120 chr3R:14284439-14284559 3.45e-01 120 chr2R:13437857-13437977 2.52e-01 120 chr2L:7685440-7685560 3.62e-01 120 chr2L:2861542-2861662 8.80e-03 61_[+1(1.25e-05)]_51 chr3L:15591309-15591429 4.17e-02 120 chrX:5664345-5664465 5.46e-01 120 chrX:3282085-3282205 7.15e-04 55_[+5(1.61e-05)]_26_[+2(9.86e-05)]_\ 23 chr3L:8912523-8912643 2.13e-01 120 chr2R:23740424-23740544 2.00e-02 31_[+1(4.43e-05)]_81 chr3L:19263651-19263771 8.34e-01 120 chr2R:21648249-21648369 7.25e-01 120 chr3L:1169732-1169852 2.35e-04 56_[+4(1.70e-05)]_12_[+3(2.02e-05)]_\ 36 chr3L:16494914-16495034 7.41e-02 120 chr2L:20840585-20840705 8.85e-01 120 chr3L:3078933-3079053 4.62e-02 120 chrX:19683060-19683180 3.71e-01 120 chr2L:2864736-2864856 1.66e-02 31_[+2(2.02e-05)]_81 chr3R:26099368-26099488 6.29e-01 120 chr3L:18994717-18994837 4.52e-03 65_[+4(1.70e-05)]_47 chr3R:10863284-10863404 3.31e-01 120 chr3R:23947153-23947273 4.50e-02 120 chr2R:20903610-20903730 1.71e-01 120 chr3R:8980812-8980932 4.04e-01 120 chr3L:17531544-17531664 2.94e-01 120 chr2L:1627911-1628031 5.92e-01 120 chr3R:12280908-12281028 9.27e-01 120 chr3L:1690837-1690957 2.24e-03 72_[+2(5.71e-05)]_40 chr2L:4829149-4829269 6.22e-02 93_[+2(2.02e-05)]_19 chr2L:1650151-1650271 3.03e-01 120 chr3R:7779768-7779888 1.60e-02 36_[+5(2.90e-05)]_53_[+3(8.96e-05)]_\ 15 chr3L:21055982-21056102 1.41e-01 120 chr3R:19223516-19223636 9.89e-02 120 chr3L:12045531-12045651 6.58e-03 36_[+5(8.16e-05)]_76 chr3L:3381987-3382107 4.27e-02 2_[+3(2.02e-05)]_110 chr2L:3323530-3323650 1.95e-03 96_[+5(1.61e-05)]_16 chr2R:15846376-15846496 1.01e-03 24_[+5(4.19e-05)]_43_[+4(1.70e-05)]_\ 37 chr2R:15480288-15480408 7.45e-05 30_[+2(2.02e-05)]_69_[+3(4.15e-05)]_\ 5 chr3L:882078-882198 4.07e-03 78_[+1(2.86e-05)]_34 chrX:17298078-17298198 7.85e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************