******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG11902.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:24294703-24294823 1.0000 120 chr3L:21252721-21252841 1.0000 120 chr3R:10389249-10389369 1.0000 120 chr3L:10709258-10709378 1.0000 120 chr3L:6396050-6396170 1.0000 120 chrX:20658738-20658858 1.0000 120 chrX:8273860-8273980 1.0000 120 chr2L:18567022-18567142 1.0000 120 chr2R:23225205-23225325 1.0000 120 chr3R:14730155-14730275 1.0000 120 chr2L:7597593-7597713 1.0000 120 chr2R:17801693-17801813 1.0000 120 chr2L:11326523-11326643 1.0000 120 chr2L:7619360-7619480 1.0000 120 chrX:19665973-19666093 1.0000 120 chrX:7537975-7538095 1.0000 120 chr2R:23433969-23434089 1.0000 120 chr3R:8107019-8107139 1.0000 120 chr3R:20258122-20258242 1.0000 120 chr2L:11871003-11871123 1.0000 120 chr2L:14248033-14248153 1.0000 120 chr3R:15631061-15631181 1.0000 120 chr3R:30062607-30062727 1.0000 120 chr3L:20953376-20953496 1.0000 120 chr3R:11888334-11888454 1.0000 120 chr3R:22636627-22636747 1.0000 120 chrX:17493762-17493882 1.0000 120 chrX:3436369-3436489 1.0000 120 chr3L:5810427-5810547 1.0000 120 chr3R:28805271-28805391 1.0000 120 chr3R:28999079-28999199 1.0000 120 chrX:18256667-18256787 1.0000 120 chr3L:19699897-19700017 1.0000 120 chrX:14897760-14897880 1.0000 120 chr3L:1458093-1458213 1.0000 120 chr2L:7573377-7573497 1.0000 120 chrX:18834525-18834645 1.0000 120 chr3R:14918046-14918166 1.0000 120 chr3R:27199401-27199521 1.0000 120 chr3R:9619202-9619322 1.0000 120 chr2R:8307867-8307987 1.0000 120 chr3R:13526138-13526258 1.0000 120 chr3L:9033737-9033857 1.0000 120 chrX:739961-740081 1.0000 120 chr3R:20837553-20837673 1.0000 120 chr3L:1031765-1031885 1.0000 120 chr3L:1519310-1519430 1.0000 120 chr2L:11396627-11396747 1.0000 120 chr3R:24613895-24614015 1.0000 120 chr2R:20065620-20065740 1.0000 120 chrX:4978993-4979113 1.0000 120 chr3L:1408247-1408367 1.0000 120 chr2L:20802321-20802441 1.0000 120 chr2L:13783983-13784103 1.0000 120 chr2R:9557616-9557736 1.0000 120 chrX:6794944-6795064 1.0000 120 chr3L:8320201-8320321 1.0000 120 chr3L:11365820-11365940 1.0000 120 chr3L:10928847-10928967 1.0000 120 chr2R:9065336-9065456 1.0000 120 chr3L:21080616-21080736 1.0000 120 chr2L:7574428-7574548 1.0000 120 chr3L:10517133-10517253 1.0000 120 chrX:17678129-17678249 1.0000 120 chr3R:24206038-24206158 1.0000 120 chrX:4615808-4615928 1.0000 120 chr3L:13393751-13393871 1.0000 120 chr3L:3074454-3074574 1.0000 120 chr3R:24392389-24392509 1.0000 120 chr3L:1088206-1088326 1.0000 120 chr3R:31424565-31424685 1.0000 120 chr2R:20136846-20136966 1.0000 120 chr2L:723928-724048 1.0000 120 chr2R:19806683-19806803 1.0000 120 chr3L:1905405-1905525 1.0000 120 chr3R:23148528-23148648 1.0000 120 chr3R:27140021-27140141 1.0000 120 chr2L:11806059-11806179 1.0000 120 chr3R:26484617-26484737 1.0000 120 chr2R:7912108-7912228 1.0000 120 chr2L:6508787-6508907 1.0000 120 chr3L:3073558-3073678 1.0000 120 chrX:3436935-3437055 1.0000 120 chr2R:24955763-24955883 1.0000 120 chr3R:8847372-8847492 1.0000 120 chr3R:9935004-9935124 1.0000 120 chr3R:5618338-5618458 1.0000 120 chr2R:7767497-7767617 1.0000 120 chr3R:9913571-9913691 1.0000 120 chr2L:526451-526571 1.0000 120 chr2L:5429231-5429351 1.0000 120 chr3L:5851701-5851821 1.0000 120 chr3R:6229183-6229303 1.0000 120 chr3L:9419516-9419636 1.0000 120 chr2R:22316531-22316651 1.0000 120 chr2L:11220918-11221038 1.0000 120 chrX:18534389-18534509 1.0000 120 chr3L:13410186-13410306 1.0000 120 chr2R:23713165-23713285 1.0000 120 chr2R:23237468-23237588 1.0000 120 chr2L:11395844-11395964 1.0000 120 chr3R:8038000-8038120 1.0000 120 chr2L:4180046-4180166 1.0000 120 chr3L:12016296-12016416 1.0000 120 chr2L:6022935-6023055 1.0000 120 chr3R:26192410-26192530 1.0000 120 chr3L:7994004-7994124 1.0000 120 chr3L:15258473-15258593 1.0000 120 chr3L:13227014-13227134 1.0000 120 chr2R:11048194-11048314 1.0000 120 chrX:20482877-20482997 1.0000 120 chr3L:15209085-15209205 1.0000 120 chr3L:6269097-6269217 1.0000 120 chr3L:4395712-4395832 1.0000 120 chr3L:1090539-1090659 1.0000 120 chrX:17726643-17726763 1.0000 120 chr2R:10237728-10237848 1.0000 120 chr3L:764500-764620 1.0000 120 chr2L:6472528-6472648 1.0000 120 chrX:14750565-14750685 1.0000 120 chr3L:3612764-3612884 1.0000 120 chr2R:10656097-10656217 1.0000 120 chr3R:17825980-17826100 1.0000 120 chr3L:6371560-6371680 1.0000 120 chr3L:8763933-8764053 1.0000 120 chr3L:12030637-12030757 1.0000 120 chr2L:14499215-14499335 1.0000 120 chrX:14073646-14073766 1.0000 120 chr3L:6270421-6270541 1.0000 120 chr3L:746523-746643 1.0000 120 chr2L:4348690-4348810 1.0000 120 chr3R:28848073-28848193 1.0000 120 chr3R:29762615-29762735 1.0000 120 chr3L:17007099-17007219 1.0000 120 chrX:8601305-8601425 1.0000 120 chr3L:5863069-5863189 1.0000 120 chrX:13568210-13568330 1.0000 120 chr3L:8368789-8368909 1.0000 120 chrX:2270085-2270205 1.0000 120 chr3R:31505426-31505546 1.0000 120 chr2L:11306254-11306374 1.0000 120 chrX:9892964-9893084 1.0000 120 chr3R:29757838-29757958 1.0000 120 chrX:7691540-7691660 1.0000 120 chr3L:18406022-18406142 1.0000 120 chr2L:21847425-21847545 1.0000 120 chr3L:21594520-21594640 1.0000 120 chr2R:24807868-24807988 1.0000 120 chr2R:10213652-10213772 1.0000 120 chr2L:18146762-18146882 1.0000 120 chrX:6059277-6059397 1.0000 120 chr3L:6471936-6472056 1.0000 120 chr3R:27224860-27224980 1.0000 120 chr3R:14002203-14002323 1.0000 120 chr2R:19849241-19849361 1.0000 120 chr3R:29538540-29538660 1.0000 120 chrX:10601745-10601865 1.0000 120 chr3R:31991913-31992033 1.0000 120 chr2R:10771962-10772082 1.0000 120 chr2L:19905383-19905503 1.0000 120 chr3L:7262628-7262748 1.0000 120 chr3R:23486883-23487003 1.0000 120 chr2R:14783016-14783136 1.0000 120 chr2R:23022632-23022752 1.0000 120 chr2R:20091326-20091446 1.0000 120 chr3L:11298513-11298633 1.0000 120 chr2R:17077125-17077245 1.0000 120 chr3L:2866948-2867068 1.0000 120 chr3R:11937604-11937724 1.0000 120 chr3L:16204237-16204357 1.0000 120 chr2R:11755377-11755497 1.0000 120 chr3R:29758563-29758683 1.0000 120 chr2R:16812883-16813003 1.0000 120 chr2L:11968735-11968855 1.0000 120 chr3R:23496649-23496769 1.0000 120 chr2R:6556871-6556991 1.0000 120 chr3R:27205138-27205258 1.0000 120 chr3L:2572119-2572239 1.0000 120 chr3L:388269-388389 1.0000 120 chr3R:18787390-18787510 1.0000 120 chrX:8295037-8295157 1.0000 120 chr2L:17749195-17749315 1.0000 120 chr3R:13793464-13793584 1.0000 120 chrX:1466316-1466436 1.0000 120 chrX:2455535-2455655 1.0000 120 chr2L:8229789-8229909 1.0000 120 chr3R:29778214-29778334 1.0000 120 chrX:7491038-7491158 1.0000 120 chr3L:6220319-6220439 1.0000 120 chr2R:23299489-23299609 1.0000 120 chrX:13278186-13278306 1.0000 120 chrX:17113504-17113624 1.0000 120 chr2L:5483231-5483351 1.0000 120 chr3L:20403664-20403784 1.0000 120 chr2R:19171719-19171839 1.0000 120 chr2R:17458941-17459061 1.0000 120 chr3R:14292347-14292467 1.0000 120 chr2R:12013419-12013539 1.0000 120 chr2R:12741713-12741833 1.0000 120 chr3L:3080795-3080915 1.0000 120 chr2L:11052510-11052630 1.0000 120 chrX:10718062-10718182 1.0000 120 chrX:9251414-9251534 1.0000 120 chr3L:761841-761961 1.0000 120 chr3R:10530690-10530810 1.0000 120 chr3L:21042681-21042801 1.0000 120 chrX:18272623-18272743 1.0000 120 chr3R:5042509-5042629 1.0000 120 chr3L:5819434-5819554 1.0000 120 chr3L:2117139-2117259 1.0000 120 chr3R:13806735-13806855 1.0000 120 chrX:1826223-1826343 1.0000 120 chr3R:22195853-22195973 1.0000 120 chr3R:4961595-4961715 1.0000 120 chr3L:818493-818613 1.0000 120 chr2L:9438422-9438542 1.0000 120 chr3L:12408998-12409118 1.0000 120 chrX:8891110-8891230 1.0000 120 chr2R:18894917-18895037 1.0000 120 chr3R:11872852-11872972 1.0000 120 chr3R:21887681-21887801 1.0000 120 chr3L:3246886-3247006 1.0000 120 chr3R:29786532-29786652 1.0000 120 chrX:5923242-5923362 1.0000 120 chrX:10104610-10104730 1.0000 120 chr2R:19969821-19969941 1.0000 120 chr3R:14356758-14356878 1.0000 120 chrX:3411985-3412105 1.0000 120 chr3L:8157113-8157233 1.0000 120 chr3R:29279670-29279790 1.0000 120 chr2L:16591501-16591621 1.0000 120 chr3L:663992-664112 1.0000 120 chr2R:19903187-19903307 1.0000 120 chr2L:19162799-19162919 1.0000 120 chr2L:4056910-4057030 1.0000 120 chr3L:18198830-18198950 1.0000 120 chr2L:3554080-3554200 1.0000 120 chr2R:15745145-15745265 1.0000 120 chr2R:7093016-7093136 1.0000 120 chr2R:13461284-13461404 1.0000 120 chr3L:777406-777526 1.0000 120 chr2L:11066129-11066249 1.0000 120 chr3R:25634013-25634133 1.0000 120 chr3L:14451633-14451753 1.0000 120 chr3L:11322620-11322740 1.0000 120 chr3L:6359318-6359438 1.0000 120 chr3R:11974733-11974853 1.0000 120 chr2L:18341055-18341175 1.0000 120 chr2L:6165846-6165966 1.0000 120 chr2L:7973949-7974069 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG11902/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG11902.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.329 C 0.173 G 0.175 T 0.323 Background letter frequencies (from file dataset with add-one prior applied): A 0.329 C 0.173 G 0.175 T 0.323 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CAGGRGCG MEME-1 width = 8 sites = 15 llr = 169 E-value = 3.9e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGGRGCG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a:16::: pos.-specific C a::::1a: probability G ::a849:a matrix T :::1:::: bits 2.5 * * ** 2.3 * * *** 2.0 * * *** 1.8 * * *** Relative 1.5 **** *** Entropy 1.3 **** *** (16.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGGAGCG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGRGCG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19665973-19666093 19 1.62e-06 GAGAGCCACA CAGGGGCG GAACGGTCTG chr2L:18567022-18567142 32 1.62e-06 GATTACTCGA CAGGGGCG GAACAGATAG chr3L:21252721-21252841 62 1.62e-06 AGCCAGGAAG CAGGGGCG GAGCAGGGTC chrX:18534389-18534509 61 4.65e-06 GGTCGGCGGC CAGGAGCG GCGTCCAATA chr3L:3073558-3073678 5 4.65e-06 GTGG CAGGAGCG TATTGGAGAG chr2L:11806059-11806179 40 4.65e-06 GGAGGCTCGC CAGGAGCG GACTTGAAAG chr2L:13783983-13784103 74 4.65e-06 ACTCAAGTCT CAGGAGCG GGTGCGGTTC chr3R:22636627-22636747 34 4.65e-06 TGCCCGCGCA CAGGAGCG GTTCACATAA chr3R:11888334-11888454 40 4.65e-06 GGAAACCGAA CAGGAGCG GATCAGCCCA chr2R:17801693-17801813 54 4.65e-06 ATACGAAATG CAGGAGCG GTTTGCCCGT chr3R:10389249-10389369 18 4.65e-06 TCACACTGCC CAGGAGCG GATTCGGTGC chr2R:22316531-22316651 30 7.64e-06 ATGCCCAATC CAGTGGCG GAATCCAATG chr3R:5618338-5618458 102 7.64e-06 TGCTATCCTG CAGTGGCG ACCAATCGGC chr3R:14730155-14730275 25 1.78e-05 TCGCCGAGAA CAGGACCG GATCTGGTAT chr3R:27199401-27199521 8 2.09e-05 GGACGAC CAGAGGCG TTACCTCCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGRGCG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19665973-19666093 1.6e-06 18_[+1]_94 chr2L:18567022-18567142 1.6e-06 31_[+1]_81 chr3L:21252721-21252841 1.6e-06 61_[+1]_51 chrX:18534389-18534509 4.7e-06 60_[+1]_52 chr3L:3073558-3073678 4.7e-06 4_[+1]_108 chr2L:11806059-11806179 4.7e-06 39_[+1]_73 chr2L:13783983-13784103 4.7e-06 73_[+1]_39 chr3R:22636627-22636747 4.7e-06 33_[+1]_79 chr3R:11888334-11888454 4.7e-06 39_[+1]_73 chr2R:17801693-17801813 4.7e-06 53_[+1]_59 chr3R:10389249-10389369 4.7e-06 17_[+1]_95 chr2R:22316531-22316651 7.6e-06 29_[+1]_83 chr3R:5618338-5618458 7.6e-06 101_[+1]_11 chr3R:14730155-14730275 1.8e-05 24_[+1]_88 chr3R:27199401-27199521 2.1e-05 7_[+1]_105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGRGCG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGGRGCG width=8 seqs=15 chrX:19665973-19666093 ( 19) CAGGGGCG 1 chr2L:18567022-18567142 ( 32) CAGGGGCG 1 chr3L:21252721-21252841 ( 62) CAGGGGCG 1 chrX:18534389-18534509 ( 61) CAGGAGCG 1 chr3L:3073558-3073678 ( 5) CAGGAGCG 1 chr2L:11806059-11806179 ( 40) CAGGAGCG 1 chr2L:13783983-13784103 ( 74) CAGGAGCG 1 chr3R:22636627-22636747 ( 34) CAGGAGCG 1 chr3R:11888334-11888454 ( 40) CAGGAGCG 1 chr2R:17801693-17801813 ( 54) CAGGAGCG 1 chr3R:10389249-10389369 ( 18) CAGGAGCG 1 chr2R:22316531-22316651 ( 30) CAGTGGCG 1 chr3R:5618338-5618458 ( 102) CAGTGGCG 1 chr3R:14730155-14730275 ( 25) CAGGACCG 1 chr3R:27199401-27199521 ( 8) CAGAGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGRGCG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 3.9e-006 -1055 253 -1055 -1055 160 -1055 -1055 -1055 -1055 -1055 252 -1055 -230 -1055 219 -128 87 -1055 119 -1055 -1055 -138 242 -1055 -1055 253 -1055 -1055 -1055 -1055 252 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGRGCG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 3.9e-006 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.066667 0.000000 0.800000 0.133333 0.600000 0.000000 0.400000 0.000000 0.000000 0.066667 0.933333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGGRGCG MEME-1 regular expression -------------------------------------------------------------------------------- CAGG[AG]GCG -------------------------------------------------------------------------------- Time 7.35 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGCASTG MEME-2 width = 8 sites = 39 llr = 333 E-value = 1.3e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGCASTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :23:a::: pos.-specific C :2:a:4:: probability G 817::62a matrix T 25::::8: bits 2.5 * 2.3 * * 2.0 * * 1.8 * * * Relative 1.5 * **** * Entropy 1.3 * **** * (12.3 bits) 1.0 * ****** 0.8 * ****** 0.5 * ****** 0.3 ******** 0.0 -------- Multilevel GTGCAGTG consensus AA CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCASTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:20136846-20136966 80 5.57e-06 CTTGGCCAAA GTGCAGTG ACCTCTTACA chr3R:29786532-29786652 16 1.11e-05 AGAGTTGAAG GTGCACTG AGAATAAAAT chr2R:17458941-17459061 80 1.11e-05 ACATGAACCA GTGCACTG AAGAAAAATA chrX:7491038-7491158 7 1.11e-05 AGAGTA GTGCACTG GAAAAAACTT chr2L:8229789-8229909 102 1.11e-05 TTTTGTCTCC GTGCACTG AATAAAGAAT chr3R:29538540-29538660 9 1.11e-05 CACAGAAA GTGCACTG AGCGAACTAT chr3L:21594520-21594640 36 1.11e-05 GAAATAAGCG GTGCACTG TCCCGCTCAG chr3R:8038000-8038120 20 1.11e-05 CGCAACAAAT GTGCACTG GGAGAAAAAT chr2R:23237468-23237588 6 1.11e-05 TCGCG GTGCACTG AGAGAAAATG chr3L:1458093-1458213 7 1.11e-05 GGTCCC GTGCACTG AGAAAAAAAA chr3R:30062607-30062727 26 1.70e-05 CTGAAGTGGG GCGCACTG ACATAATTTA chr2R:9065336-9065456 107 2.00e-05 CCGAACTAAA GTGCAGGG TATGCC chr2L:11395844-11395964 112 2.57e-05 TGCTGAGGAG GAGCAGTG A chr2R:7767497-7767617 80 2.57e-05 AAATCCTGAA GAGCAGTG CAGAGCCCAT chrX:18534389-18534509 82 4.19e-05 TCCAATAGCA GCGCAGGG CCCCAAAAAG chr3L:663992-664112 1 5.40e-05 . GTACAGTG GCTACCCGAT chrX:10104610-10104730 3 5.40e-05 CA GTACAGTG CGCGACATAA chr3L:3080795-3080915 43 5.40e-05 AACTTTCCCA GTACAGTG GTGATTAGCT chr3R:27140021-27140141 83 5.70e-05 TGTAAGTAAC GAGCAGGG TTTTTGGAAA chr2L:18567022-18567142 78 5.70e-05 GGGCCGGCCG GAGCAGGG CCCGCTTCCA chr3L:21252721-21252841 70 5.70e-05 AGCAGGGGCG GAGCAGGG TCGGATCATG chr3L:6359318-6359438 7 6.90e-05 GGAGCG GTACACTG AAACAAAATC chr2L:11806059-11806179 87 6.90e-05 ATGTTCCTTT GGGCAGGG CCACCTGCAA chrX:19665973-19666093 46 6.90e-05 GGGCCCTCGC GGGCAGGG GCCGCGTTTT chr3L:6220319-6220439 25 7.93e-05 TTACTGACTT GCACAGTG AGGCAAGTCC chr3L:11365820-11365940 45 7.93e-05 ATTGGAGCTG GCACAGTG GGGCCAACGA chr3R:25634013-25634133 112 8.96e-05 TAATATCTTC TTGCAGTG T chr3L:20403664-20403784 69 8.96e-05 TAACTGCAGT TTGCAGTG GGAAGATTAT chr2R:17077125-17077245 73 8.96e-05 TGAAACTTGT TTGCAGTG CATTCCATAT chr3L:764500-764620 90 8.96e-05 GCAGTATTTT TTGCAGTG CAACTCTTGG chr2R:19969821-19969941 1 9.51e-05 . GCACACTG AGAGAAAATT chr2L:7573377-7573497 70 9.51e-05 AGTTCAGAAT GCACACTG TATCCAAAGT chr3R:29758563-29758683 74 1.27e-04 CATAAAGTTC TCGCAGTG CACGCATGTG chr3R:27224860-27224980 2 1.54e-04 G GAACACTG AAAGAAAATG chr3L:8157113-8157233 29 1.63e-04 TTTATTTTTC GGACACTG GTCACTCGAG chrX:3436935-3437055 95 1.82e-04 CCGTTTTTTC TAGCAGTG CAGAGACAAC chr3L:6371560-6371680 17 2.04e-04 GTTTAGAGTA TAGCACTG TTATTTAGTA chrX:8273860-8273980 12 2.33e-04 TAAACAGAGC GGACACGG TGCCGGATTC chr3L:1905405-1905525 101 2.58e-04 CGTAACTTCT GTGGAGTG TATCTCAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCASTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:20136846-20136966 5.6e-06 79_[+2]_33 chr3R:29786532-29786652 1.1e-05 15_[+2]_97 chr2R:17458941-17459061 1.1e-05 79_[+2]_33 chrX:7491038-7491158 1.1e-05 6_[+2]_106 chr2L:8229789-8229909 1.1e-05 101_[+2]_11 chr3R:29538540-29538660 1.1e-05 8_[+2]_104 chr3L:21594520-21594640 1.1e-05 35_[+2]_77 chr3R:8038000-8038120 1.1e-05 19_[+2]_93 chr2R:23237468-23237588 1.1e-05 5_[+2]_107 chr3L:1458093-1458213 1.1e-05 6_[+2]_106 chr3R:30062607-30062727 1.7e-05 25_[+2]_87 chr2R:9065336-9065456 2e-05 106_[+2]_6 chr2L:11395844-11395964 2.6e-05 111_[+2]_1 chr2R:7767497-7767617 2.6e-05 79_[+2]_33 chrX:18534389-18534509 4.2e-05 81_[+2]_31 chr3L:663992-664112 5.4e-05 [+2]_112 chrX:10104610-10104730 5.4e-05 2_[+2]_110 chr3L:3080795-3080915 5.4e-05 42_[+2]_70 chr3R:27140021-27140141 5.7e-05 82_[+2]_30 chr2L:18567022-18567142 5.7e-05 77_[+2]_35 chr3L:21252721-21252841 5.7e-05 69_[+2]_43 chr3L:6359318-6359438 6.9e-05 6_[+2]_106 chr2L:11806059-11806179 6.9e-05 86_[+2]_26 chrX:19665973-19666093 6.9e-05 45_[+2]_67 chr3L:6220319-6220439 7.9e-05 24_[+2]_88 chr3L:11365820-11365940 7.9e-05 44_[+2]_68 chr3R:25634013-25634133 9e-05 111_[+2]_1 chr3L:20403664-20403784 9e-05 68_[+2]_44 chr2R:17077125-17077245 9e-05 72_[+2]_40 chr3L:764500-764620 9e-05 89_[+2]_23 chr2R:19969821-19969941 9.5e-05 [+2]_112 chr2L:7573377-7573497 9.5e-05 69_[+2]_43 chr3R:29758563-29758683 0.00013 73_[+2]_39 chr3R:27224860-27224980 0.00015 1_[+2]_111 chr3L:8157113-8157233 0.00016 28_[+2]_84 chrX:3436935-3437055 0.00018 94_[+2]_18 chr3L:6371560-6371680 0.0002 16_[+2]_96 chrX:8273860-8273980 0.00023 11_[+2]_101 chr3L:1905405-1905525 0.00026 100_[+2]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCASTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGCASTG width=8 seqs=39 chr2R:20136846-20136966 ( 80) GTGCAGTG 1 chr3R:29786532-29786652 ( 16) GTGCACTG 1 chr2R:17458941-17459061 ( 80) GTGCACTG 1 chrX:7491038-7491158 ( 7) GTGCACTG 1 chr2L:8229789-8229909 ( 102) GTGCACTG 1 chr3R:29538540-29538660 ( 9) GTGCACTG 1 chr3L:21594520-21594640 ( 36) GTGCACTG 1 chr3R:8038000-8038120 ( 20) GTGCACTG 1 chr2R:23237468-23237588 ( 6) GTGCACTG 1 chr3L:1458093-1458213 ( 7) GTGCACTG 1 chr3R:30062607-30062727 ( 26) GCGCACTG 1 chr2R:9065336-9065456 ( 107) GTGCAGGG 1 chr2L:11395844-11395964 ( 112) GAGCAGTG 1 chr2R:7767497-7767617 ( 80) GAGCAGTG 1 chrX:18534389-18534509 ( 82) GCGCAGGG 1 chr3L:663992-664112 ( 1) GTACAGTG 1 chrX:10104610-10104730 ( 3) GTACAGTG 1 chr3L:3080795-3080915 ( 43) GTACAGTG 1 chr3R:27140021-27140141 ( 83) GAGCAGGG 1 chr2L:18567022-18567142 ( 78) GAGCAGGG 1 chr3L:21252721-21252841 ( 70) GAGCAGGG 1 chr3L:6359318-6359438 ( 7) GTACACTG 1 chr2L:11806059-11806179 ( 87) GGGCAGGG 1 chrX:19665973-19666093 ( 46) GGGCAGGG 1 chr3L:6220319-6220439 ( 25) GCACAGTG 1 chr3L:11365820-11365940 ( 45) GCACAGTG 1 chr3R:25634013-25634133 ( 112) TTGCAGTG 1 chr3L:20403664-20403784 ( 69) TTGCAGTG 1 chr2R:17077125-17077245 ( 73) TTGCAGTG 1 chr3L:764500-764620 ( 90) TTGCAGTG 1 chr2R:19969821-19969941 ( 1) GCACACTG 1 chr2L:7573377-7573497 ( 70) GCACACTG 1 chr3R:29758563-29758683 ( 74) TCGCAGTG 1 chr3R:27224860-27224980 ( 2) GAACACTG 1 chr3L:8157113-8157233 ( 29) GGACACTG 1 chrX:3436935-3437055 ( 95) TAGCAGTG 1 chr3L:6371560-6371680 ( 17) TAGCACTG 1 chrX:8273860-8273980 ( 12) GGACACGG 1 chr3L:1905405-1905525 ( 101) GTGGAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCASTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.9574 E= 1.3e-002 -1193 -1193 223 -85 -68 5 -77 66 -22 -1193 204 -1193 -1193 249 -277 -1193 161 -1193 -1193 -1193 -1193 133 169 -1193 -1193 -1193 23 130 -1193 -1193 252 -1193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCASTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 1.3e-002 0.000000 0.000000 0.820513 0.179487 0.205128 0.179487 0.102564 0.512821 0.282051 0.000000 0.717949 0.000000 0.000000 0.974359 0.025641 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.435897 0.564103 0.000000 0.000000 0.000000 0.205128 0.794872 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCASTG MEME-2 regular expression -------------------------------------------------------------------------------- G[TA][GA]CA[GC][TG]G -------------------------------------------------------------------------------- Time 13.53 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCTCGGC MEME-3 width = 8 sites = 2 llr = 27 E-value = 6.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCTCGGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aaa:a::a probability G :::::aa: matrix T :::a:::: bits 2.5 *** **** 2.3 *** **** 2.0 *** **** 1.8 *** **** Relative 1.5 ******** Entropy 1.3 ******** (19.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCCTCGGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCGGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:18534389-18534509 25 1.53e-06 AACAGAGCAA CCCTCGGC CGCACCTGTG chr3L:9419516-9419636 110 1.53e-06 TGGGCGCAAT CCCTCGGC ATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCGGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:18534389-18534509 1.5e-06 24_[+3]_88 chr3L:9419516-9419636 1.5e-06 109_[+3]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCGGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCTCGGC width=8 seqs=2 chrX:18534389-18534509 ( 25) CCCTCGGC 1 chr3L:9419516-9419636 ( 110) CCCTCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCGGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 6.2e+003 -765 252 -765 -765 -765 252 -765 -765 -765 252 -765 -765 -765 -765 -765 162 -765 252 -765 -765 -765 -765 251 -765 -765 -765 251 -765 -765 252 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCGGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.2e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCGGC MEME-3 regular expression -------------------------------------------------------------------------------- CCCTCGGC -------------------------------------------------------------------------------- Time 19.72 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCCCSC MEME-4 width = 8 sites = 2 llr = 27 E-value = 7.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCCCSC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:aaa5a probability G ::a:::5: matrix T :::::::: bits 2.5 ****** * 2.3 ****** * 2.0 ****** * 1.8 ****** * Relative 1.5 ******** Entropy 1.3 ******** (19.2 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCGCCCCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCSC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:15745145-15745265 6 1.63e-06 AAATA CCGCCCGC TCAAATTAAC chr3R:11937604-11937724 79 1.63e-06 GCCCACTTCG CCGCCCCC GATTGCTTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCSC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15745145-15745265 1.6e-06 5_[+4]_107 chr3R:11937604-11937724 1.6e-06 78_[+4]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCSC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCCCSC width=8 seqs=2 chr2R:15745145-15745265 ( 6) CCGCCCGC 1 chr3R:11937604-11937724 ( 79) CCGCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCSC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 7.6e+003 -765 252 -765 -765 -765 252 -765 -765 -765 -765 251 -765 -765 252 -765 -765 -765 252 -765 -765 -765 252 -765 -765 -765 153 151 -765 -765 252 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCSC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 7.6e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCSC MEME-4 regular expression -------------------------------------------------------------------------------- CCGCCC[CG]C -------------------------------------------------------------------------------- Time 25.83 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCTCCT MEME-5 width = 8 sites = 3 llr = 38 E-value = 5.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCTCCT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:a:aa: probability G ::a::::: matrix T ::::a::a bits 2.5 **** ** 2.3 **** ** 2.0 **** ** 1.8 **** ** Relative 1.5 ******** Entropy 1.3 ******** (18.4 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCGCTCCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCTCCT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:526451-526571 87 2.83e-06 AACCTAAACT CCGCTCCT GCGCTTTTTG chr3R:9619202-9619322 91 2.83e-06 GGACCTTGAA CCGCTCCT GGTTTCCTTA chr3L:5810427-5810547 46 2.83e-06 CGCCGCTGGT CCGCTCCT GAACTGGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCTCCT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:526451-526571 2.8e-06 86_[+5]_26 chr3R:9619202-9619322 2.8e-06 90_[+5]_22 chr3L:5810427-5810547 2.8e-06 45_[+5]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCTCCT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCTCCT width=8 seqs=3 chr2L:526451-526571 ( 87) CCGCTCCT 1 chr3R:9619202-9619322 ( 91) CCGCTCCT 1 chr3L:5810427-5810547 ( 46) CCGCTCCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCTCCT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 5.6e+003 -823 253 -823 -823 -823 253 -823 -823 -823 -823 251 -823 -823 253 -823 -823 -823 -823 -823 163 -823 253 -823 -823 -823 253 -823 -823 -823 -823 -823 163 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCTCCT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 5.6e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCTCCT MEME-5 regular expression -------------------------------------------------------------------------------- CCGCTCCT -------------------------------------------------------------------------------- Time 31.97 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:24294703-24294823 1.47e-02 120 chr3L:21252721-21252841 4.20e-04 10_[+1(1.62e-06)]_21_[+1(9.91e-05)]_\ 14_[+1(1.62e-06)]_[+2(5.70e-05)]_43 chr3R:10389249-10389369 1.28e-03 17_[+1(4.65e-06)]_95 chr3L:10709258-10709378 7.21e-01 120 chr3L:6396050-6396170 2.95e-01 120 chrX:20658738-20658858 1.48e-03 75_[+4(5.92e-05)]_37 chrX:8273860-8273980 1.07e-01 120 chr2L:18567022-18567142 1.24e-05 31_[+1(1.62e-06)]_38_[+2(5.70e-05)]_\ 35 chr2R:23225205-23225325 8.55e-01 120 chr3R:14730155-14730275 8.15e-02 24_[+1(1.78e-05)]_88 chr2L:7597593-7597713 9.91e-01 120 chr2R:17801693-17801813 3.19e-03 53_[+1(4.65e-06)]_59 chr2L:11326523-11326643 9.92e-01 120 chr2L:7619360-7619480 9.84e-01 120 chrX:19665973-19666093 4.35e-05 18_[+1(1.62e-06)]_19_[+2(6.90e-05)]_\ 67 chrX:7537975-7538095 2.43e-01 120 chr2R:23433969-23434089 9.14e-01 120 chr3R:8107019-8107139 1.20e-01 120 chr3R:20258122-20258242 5.87e-01 120 chr2L:11871003-11871123 1.00e+00 120 chr2L:14248033-14248153 7.59e-01 120 chr3R:15631061-15631181 8.39e-01 120 chr3R:30062607-30062727 1.38e-04 25_[+2(1.70e-05)]_66_[+1(4.37e-05)]_\ 13 chr3L:20953376-20953496 4.65e-01 120 chr3R:11888334-11888454 1.91e-02 39_[+1(4.65e-06)]_73 chr3R:22636627-22636747 8.82e-05 22_[+4(5.92e-05)]_3_[+1(4.65e-06)]_\ 79 chrX:17493762-17493882 2.87e-01 120 chrX:3436369-3436489 1.00e+00 120 chr3L:5810427-5810547 2.75e-04 45_[+5(2.83e-06)]_7_[+5(9.57e-05)]_\ 52 chr3R:28805271-28805391 8.28e-01 120 chr3R:28999079-28999199 9.85e-01 120 chrX:18256667-18256787 4.78e-02 120 chr3L:19699897-19700017 4.40e-01 120 chrX:14897760-14897880 1.73e-01 120 chr3L:1458093-1458213 2.84e-02 6_[+2(1.11e-05)]_106 chr2L:7573377-7573497 2.67e-03 69_[+2(9.51e-05)]_19_[+3(5.58e-05)]_\ 16 chrX:18834525-18834645 2.74e-01 120 chr3R:14918046-14918166 7.45e-01 120 chr3R:27199401-27199521 4.07e-02 7_[+1(2.09e-05)]_105 chr3R:9619202-9619322 1.35e-03 90_[+5(2.83e-06)]_22 chr2R:8307867-8307987 9.32e-01 120 chr3R:13526138-13526258 1.06e-01 120 chr3L:9033737-9033857 1.25e-02 71_[+3(5.58e-05)]_41 chrX:739961-740081 8.01e-01 120 chr3R:20837553-20837673 1.48e-01 120 chr3L:1031765-1031885 8.45e-01 120 chr3L:1519310-1519430 7.68e-01 120 chr2L:11396627-11396747 9.95e-01 120 chr3R:24613895-24614015 9.31e-01 120 chr2R:20065620-20065740 6.28e-01 120 chrX:4978993-4979113 5.69e-01 120 chr3L:1408247-1408367 9.85e-01 120 chr2L:20802321-20802441 7.11e-01 120 chr2L:13783983-13784103 4.40e-03 73_[+1(4.65e-06)]_39 chr2R:9557616-9557736 9.84e-01 120 chrX:6794944-6795064 8.62e-01 120 chr3L:8320201-8320321 8.92e-01 120 chr3L:11365820-11365940 2.50e-02 44_[+2(7.93e-05)]_68 chr3L:10928847-10928967 9.14e-01 120 chr2R:9065336-9065456 5.08e-02 106_[+2(2.00e-05)]_6 chr3L:21080616-21080736 9.85e-01 120 chr2L:7574428-7574548 1.55e-01 120 chr3L:10517133-10517253 9.75e-01 120 chrX:17678129-17678249 9.53e-01 120 chr3R:24206038-24206158 5.44e-01 120 chrX:4615808-4615928 9.93e-01 120 chr3L:13393751-13393871 9.99e-01 120 chr3L:3074454-3074574 9.62e-01 120 chr3R:24392389-24392509 7.82e-02 120 chr3L:1088206-1088326 9.96e-01 120 chr3R:31424565-31424685 8.94e-01 120 chr2R:20136846-20136966 4.29e-02 79_[+2(5.57e-06)]_33 chr2L:723928-724048 3.83e-01 120 chr2R:19806683-19806803 9.99e-01 120 chr3L:1905405-1905525 2.23e-01 120 chr3R:23148528-23148648 1.34e-01 120 chr3R:27140021-27140141 1.57e-01 82_[+2(5.70e-05)]_30 chr2L:11806059-11806179 2.06e-04 39_[+1(4.65e-06)]_39_[+2(6.90e-05)]_\ 26 chr3R:26484617-26484737 7.36e-01 120 chr2R:7912108-7912228 2.54e-01 120 chr2L:6508787-6508907 1.00e+00 120 chr3L:3073558-3073678 5.37e-04 4_[+1(4.65e-06)]_108 chrX:3436935-3437055 2.49e-03 111_[+3(5.58e-05)]_1 chr2R:24955763-24955883 5.36e-01 120 chr3R:8847372-8847492 8.37e-01 120 chr3R:9935004-9935124 3.39e-01 120 chr3R:5618338-5618458 5.69e-03 101_[+1(7.64e-06)]_11 chr2R:7767497-7767617 2.35e-03 79_[+2(2.57e-05)]_33 chr3R:9913571-9913691 8.14e-01 120 chr2L:526451-526571 7.70e-03 86_[+5(2.83e-06)]_26 chr2L:5429231-5429351 9.41e-01 120 chr3L:5851701-5851821 9.99e-01 120 chr3R:6229183-6229303 8.98e-01 120 chr3L:9419516-9419636 3.09e-02 109_[+3(1.53e-06)]_3 chr2R:22316531-22316651 3.12e-02 29_[+1(7.64e-06)]_83 chr2L:11220918-11221038 9.43e-01 120 chrX:18534389-18534509 2.89e-09 24_[+3(1.53e-06)]_28_[+1(4.65e-06)]_\ 13_[+2(4.19e-05)]_31 chr3L:13410186-13410306 9.38e-01 120 chr2R:23713165-23713285 4.92e-01 120 chr2R:23237468-23237588 3.51e-02 5_[+2(1.11e-05)]_107 chr2L:11395844-11395964 1.00e-01 111_[+2(2.57e-05)]_1 chr3R:8038000-8038120 8.96e-02 19_[+2(1.11e-05)]_93 chr2L:4180046-4180166 5.75e-01 120 chr3L:12016296-12016416 6.51e-01 120 chr2L:6022935-6023055 1.00e+00 120 chr3R:26192410-26192530 6.87e-01 120 chr3L:7994004-7994124 5.85e-01 120 chr3L:15258473-15258593 1.00e+00 120 chr3L:13227014-13227134 4.98e-01 120 chr2R:11048194-11048314 9.95e-01 120 chrX:20482877-20482997 7.07e-01 120 chr3L:15209085-15209205 5.50e-01 120 chr3L:6269097-6269217 8.43e-01 120 chr3L:4395712-4395832 6.13e-01 120 chr3L:1090539-1090659 9.23e-01 120 chrX:17726643-17726763 8.69e-01 120 chr2R:10237728-10237848 1.00e+00 120 chr3L:764500-764620 1.03e-01 89_[+2(8.96e-05)]_23 chr2L:6472528-6472648 9.12e-01 120 chrX:14750565-14750685 8.38e-01 120 chr3L:3612764-3612884 9.06e-01 120 chr2R:10656097-10656217 1.23e-01 120 chr3R:17825980-17826100 9.56e-01 120 chr3L:6371560-6371680 1.82e-02 120 chr3L:8763933-8764053 3.07e-01 120 chr3L:12030637-12030757 9.97e-01 120 chr2L:14499215-14499335 7.19e-01 120 chrX:14073646-14073766 8.86e-01 120 chr3L:6270421-6270541 9.97e-01 120 chr3L:746523-746643 3.33e-01 120 chr2L:4348690-4348810 2.63e-01 120 chr3R:28848073-28848193 9.82e-01 120 chr3R:29762615-29762735 8.31e-01 120 chr3L:17007099-17007219 9.42e-01 120 chrX:8601305-8601425 1.68e-02 10_[+5(9.57e-05)]_102 chr3L:5863069-5863189 9.73e-01 120 chrX:13568210-13568330 5.42e-01 120 chr3L:8368789-8368909 9.47e-01 120 chrX:2270085-2270205 4.37e-01 120 chr3R:31505426-31505546 4.20e-01 120 chr2L:11306254-11306374 8.85e-01 120 chrX:9892964-9893084 9.01e-01 120 chr3R:29757838-29757958 1.47e-01 120 chrX:7691540-7691660 2.52e-01 120 chr3L:18406022-18406142 1.00e+00 120 chr2L:21847425-21847545 2.68e-01 120 chr3L:21594520-21594640 2.39e-03 14_[+2(9.51e-05)]_13_[+2(1.11e-05)]_\ 77 chr2R:24807868-24807988 6.91e-01 120 chr2R:10213652-10213772 9.98e-01 120 chr2L:18146762-18146882 9.46e-01 120 chrX:6059277-6059397 7.73e-01 120 chr3L:6471936-6472056 9.88e-01 120 chr3R:27224860-27224980 4.27e-01 120 chr3R:14002203-14002323 1.00e+00 120 chr2R:19849241-19849361 9.96e-01 120 chr3R:29538540-29538660 4.29e-02 8_[+2(1.11e-05)]_104 chrX:10601745-10601865 7.89e-02 120 chr3R:31991913-31992033 1.00e+00 120 chr2R:10771962-10772082 7.58e-01 120 chr2L:19905383-19905503 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chr2L:3554080-3554200 2.48e-01 120 chr2R:15745145-15745265 1.14e-04 5_[+4(1.63e-06)]_107 chr2R:7093016-7093136 4.21e-01 120 chr2R:13461284-13461404 9.97e-01 120 chr3L:777406-777526 9.98e-01 120 chr2L:11066129-11066249 9.94e-01 120 chr3R:25634013-25634133 3.00e-01 111_[+2(8.96e-05)]_1 chr3L:14451633-14451753 2.73e-01 120 chr3L:11322620-11322740 4.47e-01 120 chr3L:6359318-6359438 5.08e-02 6_[+2(6.90e-05)]_106 chr3R:11974733-11974853 7.04e-01 120 chr2L:18341055-18341175 9.02e-01 120 chr2L:6165846-6165966 8.05e-01 120 chr2L:7973949-7974069 1.00e+00 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************