******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG11762.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:4797736-4797856 1.0000 120 chr3R:28623745-28623865 1.0000 120 chr3R:31295834-31295954 1.0000 120 chr3R:24906140-24906260 1.0000 120 chr2R:11048083-11048203 1.0000 120 chr3L:21080602-21080722 1.0000 120 chr3R:16368460-16368580 1.0000 120 chr3L:15005255-15005375 1.0000 120 chr3L:10928834-10928954 1.0000 120 chr2L:19317960-19318080 1.0000 120 chrX:11658567-11658687 1.0000 120 chr2L:21020177-21020297 1.0000 120 chr3L:16974659-16974779 1.0000 120 chr3R:29279757-29279877 1.0000 120 chr3L:2117129-2117249 1.0000 120 chr2L:2432957-2433077 1.0000 120 chr3L:15258508-15258628 1.0000 120 chrX:17678148-17678268 1.0000 120 chr2R:20209410-20209530 1.0000 120 chrX:13238657-13238777 1.0000 120 chr2L:16590936-16591056 1.0000 120 chr3L:6371563-6371683 1.0000 120 chr2L:19574592-19574712 1.0000 120 chr2L:7611671-7611791 1.0000 120 chr3R:21931367-21931487 1.0000 120 chrX:14073641-14073761 1.0000 120 chrX:17679842-17679962 1.0000 120 chr2R:15740775-15740895 1.0000 120 chr2R:14317135-14317255 1.0000 120 chr3L:18079739-18079859 1.0000 120 chr3L:10352204-10352324 1.0000 120 chr2L:20463501-20463621 1.0000 120 chr3R:31768352-31768472 1.0000 120 chr3L:21042113-21042233 1.0000 120 chr2L:16594007-16594127 1.0000 120 chr3R:18787363-18787483 1.0000 120 chrX:9466255-9466375 1.0000 120 chr3R:8038063-8038183 1.0000 120 chr2R:14345495-14345615 1.0000 120 chr2R:14082291-14082411 1.0000 120 chrX:13541059-13541179 1.0000 120 chr3L:5941274-5941394 1.0000 120 chr3L:12030664-12030784 1.0000 120 chr2L:2944669-2944789 1.0000 120 chr3L:16873273-16873393 1.0000 120 chr3R:14292372-14292492 1.0000 120 chr2L:4211403-4211523 1.0000 120 chr3L:817856-817976 1.0000 120 chr2L:9231902-9232022 1.0000 120 chr3R:27199547-27199667 1.0000 120 chrX:17582009-17582129 1.0000 120 chr3L:8448681-8448801 1.0000 120 chr3R:22140148-22140268 1.0000 120 chr2R:7912187-7912307 1.0000 120 chrX:12000373-12000493 1.0000 120 chr2R:11755315-11755435 1.0000 120 chr3R:21649572-21649692 1.0000 120 chr3R:29280815-29280935 1.0000 120 chr3L:10928046-10928166 1.0000 120 chr2R:17077052-17077172 1.0000 120 chr3L:16748514-16748634 1.0000 120 chr2R:18800255-18800375 1.0000 120 chr2R:7531282-7531402 1.0000 120 chr3L:10709235-10709355 1.0000 120 chr3R:31680051-31680171 1.0000 120 chr2L:7513821-7513941 1.0000 120 chr2R:13461295-13461415 1.0000 120 chr3L:8782120-8782240 1.0000 120 chr3L:1900824-1900944 1.0000 120 chr3R:22751274-22751394 1.0000 120 chrX:5924477-5924597 1.0000 120 chr2L:19162830-19162950 1.0000 120 chrX:4175960-4176080 1.0000 120 chr2R:7767408-7767528 1.0000 120 chr2L:5483234-5483354 1.0000 120 chr3L:2549078-2549198 1.0000 120 chr3R:14917970-14918090 1.0000 120 chr3R:24910265-24910385 1.0000 120 chr3R:9420971-9421091 1.0000 120 chr3L:15641615-15641735 1.0000 120 chr3R:21830518-21830638 1.0000 120 chr2R:9557589-9557709 1.0000 120 chr3R:19075244-19075364 1.0000 120 chr3L:787762-787882 1.0000 120 chr3L:14451703-14451823 1.0000 120 chr2R:23306072-23306192 1.0000 120 chr3L:15252596-15252716 1.0000 120 chr2L:20936562-20936682 1.0000 120 chr2R:12733001-12733121 1.0000 120 chr3L:2575338-2575458 1.0000 120 chr3L:6482992-6483112 1.0000 120 chrX:15320642-15320762 1.0000 120 chr3R:9935021-9935141 1.0000 120 chr2L:18003142-18003262 1.0000 120 chr3R:11806875-11806995 1.0000 120 chr3R:14007690-14007810 1.0000 120 chr3R:15631049-15631169 1.0000 120 chr3L:8870625-8870745 1.0000 120 chr2R:18300965-18301085 1.0000 120 chr3R:26496505-26496625 1.0000 120 chr3R:15567108-15567228 1.0000 120 chr2R:13438392-13438512 1.0000 120 chr3L:6458839-6458959 1.0000 120 chrX:10581682-10581802 1.0000 120 chr3L:10315040-10315160 1.0000 120 chr2R:20206708-20206828 1.0000 120 chr3R:24996659-24996779 1.0000 120 chr2L:19200357-19200477 1.0000 120 chr3L:16482337-16482457 1.0000 120 chr3R:16210861-16210981 1.0000 120 chrX:2365576-2365696 1.0000 120 chrX:12725008-12725128 1.0000 120 chr2R:19153425-19153545 1.0000 120 chr2L:7971539-7971659 1.0000 120 chr3L:6364381-6364501 1.0000 120 chr3L:16148016-16148136 1.0000 120 chr3L:15220469-15220589 1.0000 120 chr3R:30461649-30461769 1.0000 120 chr2L:18146758-18146878 1.0000 120 chr3R:4687311-4687431 1.0000 120 chr3L:11298447-11298567 1.0000 120 chrX:12724729-12724849 1.0000 120 chr3L:16218052-16218172 1.0000 120 chr3L:14534752-14534872 1.0000 120 chr3L:21060584-21060704 1.0000 120 chr3L:4383258-4383378 1.0000 120 chr3R:19274148-19274268 1.0000 120 chr3R:14847351-14847471 1.0000 120 chr3L:18790877-18790997 1.0000 120 chrX:14897798-14897918 1.0000 120 chr3R:27167534-27167654 1.0000 120 chr3L:14610591-14610711 1.0000 120 chrX:19878898-19879018 1.0000 120 chr3R:12406783-12406903 1.0000 120 chr3R:13806784-13806904 1.0000 120 chr2L:5623844-5623964 1.0000 120 chr2R:12013411-12013531 1.0000 120 chr3L:10757091-10757211 1.0000 120 chr3R:10832637-10832757 1.0000 120 chr3R:15556600-15556720 1.0000 120 chr3L:14622537-14622657 1.0000 120 chr2L:18372231-18372351 1.0000 120 chr2L:6508859-6508979 1.0000 120 chr3L:16752513-16752633 1.0000 120 chr2L:19193803-19193923 1.0000 120 chr3L:3078589-3078709 1.0000 120 chr2L:13056152-13056272 1.0000 120 chrX:9460724-9460844 1.0000 120 chr3L:7262629-7262749 1.0000 120 chr3L:14253596-14253716 1.0000 120 chr2L:20913078-20913198 1.0000 120 chrX:7892606-7892726 1.0000 120 chrX:3380285-3380405 1.0000 120 chr2R:9282830-9282950 1.0000 120 chr3R:5042521-5042641 1.0000 120 chr3L:15264736-15264856 1.0000 120 chr2L:675022-675142 1.0000 120 chrX:342564-342684 1.0000 120 chr2L:21313996-21314116 1.0000 120 chr2R:11183186-11183306 1.0000 120 chr2L:4071723-4071843 1.0000 120 chrX:17113449-17113569 1.0000 120 chr3R:13846040-13846160 1.0000 120 chr2R:10474691-10474811 1.0000 120 chr2R:21376460-21376580 1.0000 120 chr3R:31329979-31330099 1.0000 120 chrX:18256663-18256783 1.0000 120 chrX:5082419-5082539 1.0000 120 chr2R:10213669-10213789 1.0000 120 chr3R:31762820-31762940 1.0000 120 chr2R:19420462-19420582 1.0000 120 chr2R:15745305-15745425 1.0000 120 chr2L:18341075-18341195 1.0000 120 chr3R:16119563-16119683 1.0000 120 chr2L:20802379-20802499 1.0000 120 chr3R:29875884-29876004 1.0000 120 chr2L:10677455-10677575 1.0000 120 chr2L:16406640-16406760 1.0000 120 chr3L:8014026-8014146 1.0000 120 chr3R:18669885-18670005 1.0000 120 chr2L:6197912-6198032 1.0000 120 chr3R:10530680-10530800 1.0000 120 chr3L:2386585-2386705 1.0000 120 chr3R:23508434-23508554 1.0000 120 chr2L:5429254-5429374 1.0000 120 chr2R:8240836-8240956 1.0000 120 chr2L:11968782-11968902 1.0000 120 chr2L:20371567-20371687 1.0000 120 chr3L:12058554-12058674 1.0000 120 chr2R:6219989-6220109 1.0000 120 chr2R:14968000-14968120 1.0000 120 chr2L:11069641-11069761 1.0000 120 chr3L:2533817-2533937 1.0000 120 chr3L:2471146-2471266 1.0000 120 chr2L:21847425-21847545 1.0000 120 chr3R:22185790-22185910 1.0000 120 chr3L:959312-959432 1.0000 120 chr2R:20162687-20162807 1.0000 120 chr2R:9674740-9674860 1.0000 120 chr3L:4722052-4722172 1.0000 120 chr3R:10888772-10888892 1.0000 120 chr3R:20286307-20286427 1.0000 120 chr3L:11298648-11298768 1.0000 120 chrX:6059273-6059393 1.0000 120 chr2L:4348681-4348801 1.0000 120 chr3L:2802178-2802298 1.0000 120 chr3L:10794009-10794129 1.0000 120 chrX:4197620-4197740 1.0000 120 chr3L:15762885-15763005 1.0000 120 chr3R:8469820-8469940 1.0000 120 chr3L:18243277-18243397 1.0000 120 chr3R:10455055-10455175 1.0000 120 chr3L:818512-818632 1.0000 120 chr2R:22162308-22162428 1.0000 120 chr3L:15209281-15209401 1.0000 120 chr3R:14449429-14449549 1.0000 120 chr3L:6220330-6220450 1.0000 120 chr3R:16223880-16224000 1.0000 120 chr3L:6359329-6359449 1.0000 120 chr2R:19849236-19849356 1.0000 120 chrX:5897202-5897322 1.0000 120 chr3R:21837165-21837285 1.0000 120 chrX:19230004-19230124 1.0000 120 chr3R:17081756-17081876 1.0000 120 chr3L:746485-746605 1.0000 120 chr3R:21894057-21894177 1.0000 120 chr3R:8849501-8849621 1.0000 120 chr3L:8419107-8419227 1.0000 120 chr2L:18352939-18353059 1.0000 120 chr3R:9966251-9966371 1.0000 120 chr3R:21824103-21824223 1.0000 120 chr3L:9742396-9742516 1.0000 120 chr3R:24614184-24614304 1.0000 120 chr2L:14631128-14631248 1.0000 120 chr3L:12410953-12411073 1.0000 120 chrX:17237591-17237711 1.0000 120 chr2L:7104678-7104798 1.0000 120 chr3L:14984613-14984733 1.0000 120 chr2L:7146060-7146180 1.0000 120 chrX:9047125-9047245 1.0000 120 chrX:1826165-1826285 1.0000 120 chr3L:13495188-13495308 1.0000 120 chr3L:4545817-4545937 1.0000 120 chr2L:249730-249850 1.0000 120 chrX:13679726-13679846 1.0000 120 chr2R:11748407-11748527 1.0000 120 chr3L:15693201-15693321 1.0000 120 chr2L:13613803-13613923 1.0000 120 chr2R:11094484-11094604 1.0000 120 chr3R:29786555-29786675 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG11762/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG11762.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.345 C 0.154 G 0.15 T 0.351 Background letter frequencies (from file dataset with add-one prior applied): A 0.345 C 0.154 G 0.15 T 0.351 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGCACTKB MEME-1 width = 8 sites = 25 llr = 232 E-value = 5.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCACTKB MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a:::2 pos.-specific C ::a:9:24 probability G :a::::52 matrix T a:::1a32 bits 2.7 ** 2.5 ** 2.2 ** * 1.9 ** * Relative 1.6 ****** Entropy 1.4 ****** (13.4 bits) 1.1 ****** 0.8 ******* 0.5 ******* 0.3 ******** 0.0 -------- Multilevel TGCACTGC consensus TT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACTKB MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:20162687-20162807 18 3.49e-06 AATATTTCAC TGCACTGC TTAAATTCCG chr3R:4687311-4687431 11 3.49e-06 ATGAATTTGT TGCACTGC GAGAACGGCA chrX:14073641-14073761 3 3.49e-06 AA TGCACTGC GAGAAATGCA chr3L:8419107-8419227 1 6.89e-06 . TGCACTGG CAGAAAAGTG chr3L:21042113-21042233 15 6.89e-06 CACTGCTAAT TGCACTGG GAAAAATGAT chr2R:11048083-11048203 13 6.89e-06 CCCACATACG TGCACTGG GAGAAATAAT chr2L:20802379-20802499 84 1.05e-05 GTTTTCTATC TGCACTCC AACTTCACTT chr3R:27167534-27167654 96 1.05e-05 TTTTTTCCAG TGCACTCC GTAAGCGAAC chr3L:6371563-6371683 108 1.05e-05 TGCAGCTCTC TGCACTCC CCTGC chr2L:249730-249850 104 2.66e-05 GAATATGATT TGCACTTC GGTTTGTCC chr2L:6508859-6508979 108 2.66e-05 TTTCTTGCAG TGCACTGT GTTTG chr3L:16748514-16748634 96 2.66e-05 AAAATAGTTT TGCACTTC TATAAATTTT chr3R:14449429-14449549 2 3.44e-05 G TGCACTGA AAGAAAACTA chr3R:11806875-11806995 82 3.44e-05 TTGCCAATTA TGCACTGA AAAGTAATAA chr3L:15641615-15641735 54 3.44e-05 ATCGCATGGA TGCACTGA GAAAAATGTA chr3L:10928046-10928166 6 3.44e-05 GTGAA TGCACTGA AAACAAAAAT chr3R:10832637-10832757 7 4.59e-05 AAAGTA TGCACTTG CAACATTTCT chr3R:15567108-15567228 112 4.59e-05 TTATTTTCAG TGCACTTG T chr3L:2471146-2471266 108 5.41e-05 TGGAACTTCA TGCACTCT CATTG chr3R:31329979-31330099 9 7.27e-05 GCTATAAA TGCACTTT GAAAAAAATA chr3L:16752513-16752633 8 7.27e-05 TTGAAAG TGCACTTT GAATAAATGC chrX:19878898-19879018 7 7.27e-05 AGTTCT TGCACTTT AATAGAAAAA chr3R:22140148-22140268 72 7.27e-05 CATTTGCCGC TGCACTTT TTCTTCATGT chrX:4197620-4197740 64 1.07e-04 ACTGGAAAAT TGCATTGC TTTTAAATTG chr3L:2549078-2549198 23 1.07e-04 GCATCAGTGT TGCATTGC TATCTTTAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACTKB MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:20162687-20162807 3.5e-06 17_[+1]_95 chr3R:4687311-4687431 3.5e-06 10_[+1]_102 chrX:14073641-14073761 3.5e-06 2_[+1]_110 chr3L:8419107-8419227 6.9e-06 [+1]_112 chr3L:21042113-21042233 6.9e-06 14_[+1]_98 chr2R:11048083-11048203 6.9e-06 12_[+1]_100 chr2L:20802379-20802499 1e-05 83_[+1]_29 chr3R:27167534-27167654 1e-05 95_[+1]_17 chr3L:6371563-6371683 1e-05 107_[+1]_5 chr2L:249730-249850 2.7e-05 103_[+1]_9 chr2L:6508859-6508979 2.7e-05 107_[+1]_5 chr3L:16748514-16748634 2.7e-05 95_[+1]_17 chr3R:14449429-14449549 3.4e-05 1_[+1]_111 chr3R:11806875-11806995 3.4e-05 81_[+1]_31 chr3L:15641615-15641735 3.4e-05 53_[+1]_59 chr3L:10928046-10928166 3.4e-05 5_[+1]_107 chr3R:10832637-10832757 4.6e-05 6_[+1]_106 chr3R:15567108-15567228 4.6e-05 111_[+1]_1 chr3L:2471146-2471266 5.4e-05 107_[+1]_5 chr3R:31329979-31330099 7.3e-05 8_[+1]_104 chr3L:16752513-16752633 7.3e-05 7_[+1]_105 chrX:19878898-19879018 7.3e-05 6_[+1]_106 chr3R:22140148-22140268 7.3e-05 71_[+1]_41 chrX:4197620-4197740 0.00011 63_[+1]_49 chr3L:2549078-2549198 0.00011 22_[+1]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACTKB MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCACTKB width=8 seqs=25 chr2R:20162687-20162807 ( 18) TGCACTGC 1 chr3R:4687311-4687431 ( 11) TGCACTGC 1 chrX:14073641-14073761 ( 3) TGCACTGC 1 chr3L:8419107-8419227 ( 1) TGCACTGG 1 chr3L:21042113-21042233 ( 15) TGCACTGG 1 chr2R:11048083-11048203 ( 13) TGCACTGG 1 chr2L:20802379-20802499 ( 84) TGCACTCC 1 chr3R:27167534-27167654 ( 96) TGCACTCC 1 chr3L:6371563-6371683 ( 108) TGCACTCC 1 chr2L:249730-249850 ( 104) TGCACTTC 1 chr2L:6508859-6508979 ( 108) TGCACTGT 1 chr3L:16748514-16748634 ( 96) TGCACTTC 1 chr3R:14449429-14449549 ( 2) TGCACTGA 1 chr3R:11806875-11806995 ( 82) TGCACTGA 1 chr3L:15641615-15641735 ( 54) TGCACTGA 1 chr3L:10928046-10928166 ( 6) TGCACTGA 1 chr3R:10832637-10832757 ( 7) TGCACTTG 1 chr3R:15567108-15567228 ( 112) TGCACTTG 1 chr3L:2471146-2471266 ( 108) TGCACTCT 1 chr3R:31329979-31330099 ( 9) TGCACTTT 1 chr3L:16752513-16752633 ( 8) TGCACTTT 1 chrX:19878898-19879018 ( 7) TGCACTTT 1 chr3R:22140148-22140268 ( 72) TGCACTTT 1 chrX:4197620-4197740 ( 64) TGCATTGC 1 chr3L:2549078-2549198 ( 23) TGCATTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACTKB MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6312 E= 5.1e+000 -1129 -1129 -1129 151 -1129 -1129 273 -1129 -1129 269 -1129 -1129 154 -1129 -1129 -1129 -1129 257 -1129 -213 -1129 -1129 -1129 151 -1129 5 179 -13 -111 137 41 -55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACTKB MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 5.1e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.920000 0.000000 0.080000 0.000000 0.000000 0.000000 1.000000 0.000000 0.160000 0.520000 0.320000 0.160000 0.400000 0.200000 0.240000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCACTKB MEME-1 regular expression -------------------------------------------------------------------------------- TGCACT[GT][CTG] -------------------------------------------------------------------------------- Time 7.53 secs. ******************************************************************************** ******************************************************************************** MOTIF GSWGCTGC MEME-2 width = 8 sites = 17 llr = 167 E-value = 4.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSWGCTGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :14::1:: pos.-specific C :4::72:a probability G a4:a:2a: matrix T :16:35:: bits 2.7 * * ** 2.5 * * ** 2.2 * * ** 1.9 * * ** Relative 1.6 * * ** Entropy 1.4 * ** ** (14.2 bits) 1.1 * ** ** 0.8 ** ** ** 0.5 ***** ** 0.3 ******** 0.0 -------- Multilevel GCTGCTGC consensus GA TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSWGCTGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:11094484-11094604 97 4.28e-06 CAGTGGTTCT GCTGCTGC TCCTGCTGTC chr3R:12406783-12406903 78 4.28e-06 AGCTGCAGTC GGTGCTGC GGGAGATGGG chr3R:14847351-14847471 9 4.28e-06 TCTTTTTG GGTGCTGC GAGCTCAACT chr3R:9935021-9935141 69 4.28e-06 CGATTTGACT GCTGCTGC CATTTGAATT chr3L:10352204-10352324 52 4.28e-06 TTGCCTtgct gctgctgc ttctgcttta chrX:13541059-13541179 101 6.85e-06 TTCTCGCTGT GCAGCGGC AACACTACCA chr3R:18669885-18670005 96 9.80e-06 ATTTCGTATT GGAGCTGC TACATTTGTG chr3R:16368460-16368580 72 1.11e-05 TTGGAATTTA GCAGCCGC TTTTAGGTAT chr3R:21830518-21830638 81 1.40e-05 TTTATTACGT GGTGTGGC TAATTCATTT chr2L:4797736-4797856 105 1.40e-05 TTCCCGTGTG GGTGTGGC ATGTGGCA chr2R:11048083-11048203 33 2.88e-05 GAAATAATGC GTTGCTGC TAGTACGAAA chr3R:22751274-22751394 15 3.46e-05 AATCGTAGTG GGAGTGGC CCAATTGCGA chr2R:13461295-13461415 21 3.46e-05 CAGCTTACTA GCTGCAGC ATTCTGAGCG chr3L:18790877-18790997 91 4.13e-05 TTCTCGTTTC GCAGTTGC TGATTCTCTC chrX:9466255-9466375 84 4.28e-05 AATACGCAGT GTTGCCGC TGTTGAAAAT chr3L:8014026-8014146 93 4.72e-05 AACTCGTATC GGAGTCGC GATTCTGTGG chr3L:16482337-16482457 112 5.84e-05 TTTCTGTGTA GATGCTGC T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSWGCTGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:11094484-11094604 4.3e-06 96_[+2]_16 chr3R:12406783-12406903 4.3e-06 77_[+2]_35 chr3R:14847351-14847471 4.3e-06 8_[+2]_104 chr3R:9935021-9935141 4.3e-06 68_[+2]_44 chr3L:10352204-10352324 4.3e-06 51_[+2]_61 chrX:13541059-13541179 6.9e-06 100_[+2]_12 chr3R:18669885-18670005 9.8e-06 95_[+2]_17 chr3R:16368460-16368580 1.1e-05 71_[+2]_41 chr3R:21830518-21830638 1.4e-05 80_[+2]_32 chr2L:4797736-4797856 1.4e-05 104_[+2]_8 chr2R:11048083-11048203 2.9e-05 32_[+2]_80 chr3R:22751274-22751394 3.5e-05 14_[+2]_98 chr2R:13461295-13461415 3.5e-05 20_[+2]_92 chr3L:18790877-18790997 4.1e-05 90_[+2]_22 chrX:9466255-9466375 4.3e-05 83_[+2]_29 chr3L:8014026-8014146 4.7e-05 92_[+2]_20 chr3L:16482337-16482457 5.8e-05 111_[+2]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSWGCTGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSWGCTGC width=8 seqs=17 chr2R:11094484-11094604 ( 97) GCTGCTGC 1 chr3R:12406783-12406903 ( 78) GGTGCTGC 1 chr3R:14847351-14847471 ( 9) GGTGCTGC 1 chr3R:9935021-9935141 ( 69) GCTGCTGC 1 chr3L:10352204-10352324 ( 52) GCTGCTGC 1 chrX:13541059-13541179 ( 101) GCAGCGGC 1 chr3R:18669885-18670005 ( 96) GGAGCTGC 1 chr3R:16368460-16368580 ( 72) GCAGCCGC 1 chr3R:21830518-21830638 ( 81) GGTGTGGC 1 chr2L:4797736-4797856 ( 105) GGTGTGGC 1 chr2R:11048083-11048203 ( 33) GTTGCTGC 1 chr3R:22751274-22751394 ( 15) GGAGTGGC 1 chr2R:13461295-13461415 ( 21) GCTGCAGC 1 chr3L:18790877-18790997 ( 91) GCAGTTGC 1 chrX:9466255-9466375 ( 84) GTTGCCGC 1 chr3L:8014026-8014146 ( 93) GGAGTCGC 1 chr3L:16482337-16482457 ( 112) GATGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSWGCTGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4927 E= 4.5e+002 -1073 -1073 273 -1073 -255 141 145 -157 3 -1073 -1073 88 -1073 -1073 273 -1073 -1073 219 -1073 -25 -255 19 65 59 -1073 -1073 273 -1073 -1073 269 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSWGCTGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 4.5e+002 0.000000 0.000000 1.000000 0.000000 0.058824 0.411765 0.411765 0.117647 0.352941 0.000000 0.000000 0.647059 0.000000 0.000000 1.000000 0.000000 0.000000 0.705882 0.000000 0.294118 0.058824 0.176471 0.235294 0.529412 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSWGCTGC MEME-2 regular expression -------------------------------------------------------------------------------- G[CG][TA]G[CT][TG]GC -------------------------------------------------------------------------------- Time 13.80 secs. ******************************************************************************** ******************************************************************************** MOTIF SGCCCSAS MEME-3 width = 8 sites = 14 llr = 141 E-value = 2.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGCCCSAS MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::3::9: pos.-specific C 3:a696:6 probability G 6a:11414 matrix T 1::::::: bits 2.7 ** 2.5 ** 2.2 ** * 1.9 ** * Relative 1.6 ** ** * Entropy 1.4 ** ** * (14.5 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCCCCAC consensus C A G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCCCSAS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:10709235-10709355 106 6.72e-07 GAGTAAAATA GGCCCCAC GTTGGGC chr3R:8469820-8469940 13 1.98e-06 GATATGATTA GGCCCCAG TGTTGAAAGT chr3L:4545817-4545937 15 3.31e-06 GCGAGAAATG GGCCCGAG GCCTCGCATC chr3R:22185790-22185910 113 5.23e-06 TGTTTTGTTG CGCCCCAG chr3L:746485-746605 96 7.98e-06 TTATCACATG GGCACCAC AAGATACCAT chr3R:10888772-10888892 84 7.98e-06 ATATTGTTGT CGCCCCGC TTATCGTCCA chr2L:4348681-4348801 27 1.07e-05 ATTTATGTAT GGCACGAC TTAAGCAAGT chr2L:19574592-19574712 92 1.59e-05 TACTTTTAAT TGCCCCAC TGTATGAATT chr2R:10474691-10474811 81 2.05e-05 CTTTTCGCTG GGCACGAG GGGCCAAAGT chr3R:21931367-21931487 2 2.05e-05 C CGCCGCAC AGTGGAACTC chr3L:2117129-2117249 36 2.33e-05 AATGGTACAT TGCCCGAC ATTATAAAAT chr3R:12406783-12406903 48 2.64e-05 AATGGGGCAT CGCCGGAC GCAACCAGGA chr3L:15641615-15641735 29 2.64e-05 GCCATGCGAA GGCGCCAG CGTCAACATC chr2R:19153425-19153545 104 2.86e-05 TCGCAGTGCA GGCACGGC AGGAAGCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCCCSAS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:10709235-10709355 6.7e-07 105_[+3]_7 chr3R:8469820-8469940 2e-06 12_[+3]_100 chr3L:4545817-4545937 3.3e-06 14_[+3]_98 chr3R:22185790-22185910 5.2e-06 112_[+3] chr3L:746485-746605 8e-06 95_[+3]_17 chr3R:10888772-10888892 8e-06 83_[+3]_29 chr2L:4348681-4348801 1.1e-05 26_[+3]_86 chr2L:19574592-19574712 1.6e-05 91_[+3]_21 chr2R:10474691-10474811 2.1e-05 80_[+3]_32 chr3R:21931367-21931487 2.1e-05 1_[+3]_111 chr3L:2117129-2117249 2.3e-05 35_[+3]_77 chr3R:12406783-12406903 2.6e-05 47_[+3]_65 chr3L:15641615-15641735 2.6e-05 28_[+3]_84 chr2R:19153425-19153545 2.9e-05 103_[+3]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCCCSAS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGCCCSAS width=8 seqs=14 chr3L:10709235-10709355 ( 106) GGCCCCAC 1 chr3R:8469820-8469940 ( 13) GGCCCCAG 1 chr3L:4545817-4545937 ( 15) GGCCCGAG 1 chr3R:22185790-22185910 ( 113) CGCCCCAG 1 chr3L:746485-746605 ( 96) GGCACCAC 1 chr3R:10888772-10888892 ( 84) CGCCCCGC 1 chr2L:4348681-4348801 ( 27) GGCACGAC 1 chr2L:19574592-19574712 ( 92) TGCCCCAC 1 chr2R:10474691-10474811 ( 81) GGCACGAG 1 chr3R:21931367-21931487 ( 2) CGCCGCAC 1 chr3L:2117129-2117249 ( 36) TGCCCGAC 1 chr3R:12406783-12406903 ( 48) CGCCGGAC 1 chr3L:15641615-15641735 ( 29) GGCGCCAG 1 chr2R:19153425-19153545 ( 104) GGCACGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCCCSAS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.6482 E= 2.9e+003 -1045 89 193 -129 -1045 -1045 273 -1045 -1045 269 -1045 -1045 -27 206 -107 -1045 -1045 247 -7 -1045 -1045 189 151 -1045 131 -1045 -7 -1045 -1045 206 125 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCCCSAS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 2.9e+003 0.000000 0.285714 0.571429 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.285714 0.642857 0.071429 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.571429 0.428571 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 0.642857 0.357143 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCCCSAS MEME-3 regular expression -------------------------------------------------------------------------------- [GC]GC[CA]C[CG]A[CG] -------------------------------------------------------------------------------- Time 20.08 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCGAGG MEME-4 width = 8 sites = 2 llr = 27 E-value = 1.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCGAGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:::a:: pos.-specific C a::a:::: probability G ::a:a:aa matrix T :::::::: bits 2.7 * *** ** 2.5 * *** ** 2.2 * *** ** 1.9 * *** ** Relative 1.6 ******** Entropy 1.4 ******** (19.4 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGCGAGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGAGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:21847425-21847545 88 1.43e-06 TTCTTATATA CAGCGAGG ATCCACCTTT chr3L:18790877-18790997 18 1.43e-06 TACTTCTGCC CAGCGAGG GCTTATCTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGAGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:21847425-21847545 1.4e-06 87_[+4]_25 chr3L:18790877-18790997 1.4e-06 17_[+4]_95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGAGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCGAGG width=8 seqs=2 chr2L:21847425-21847545 ( 88) CAGCGAGG 1 chr3L:18790877-18790997 ( 18) CAGCGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGAGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.8e+004 -765 269 -765 -765 153 -765 -765 -765 -765 -765 273 -765 -765 269 -765 -765 -765 -765 273 -765 153 -765 -765 -765 -765 -765 273 -765 -765 -765 273 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGAGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.8e+004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCGAGG MEME-4 regular expression -------------------------------------------------------------------------------- CAGCGAGG -------------------------------------------------------------------------------- Time 26.28 secs. ******************************************************************************** ******************************************************************************** MOTIF AGCAMACA MEME-5 width = 8 sites = 17 llr = 164 E-value = 2.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGCAMACA MEME-5 Description -------------------------------------------------------------------------------- Simplified A a::668:a pos.-specific C ::a242a: probability G :a:2:::: matrix T :::::::: bits 2.7 ** * 2.5 ** * 2.2 ** * 1.9 ** * Relative 1.6 *** ** Entropy 1.4 *** ** (13.9 bits) 1.1 *** **** 0.8 *** **** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AGCAAACA consensus GCC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAMACA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22162308-22162428 68 1.11e-05 ATATTATATA AGCACACA CATCATACTG chr2R:10474691-10474811 10 1.11e-05 AAATTAAAA AGCACACA GAAATAATGT chr3L:2575338-2575458 8 1.11e-05 CTAAGTT AGCGCACA TTCCTGCTAA chr2R:9557589-9557709 8 1.11e-05 AACACTC AGCACACA ATAGTTTTAC chr3R:21649572-21649692 63 1.11e-05 GCAAACTGTA AGCGCACA GAAAAAAAAT chr3R:10530680-10530800 7 1.96e-05 AATAAT AGCACCCA AGAATTAGCC chr2L:18003142-18003262 1 1.96e-05 . AGCCCACA TTTCTTTTAA chr2L:11968782-11968902 74 4.45e-05 ACCAAGAACT AGCGAACA CTTCCAAGAA chr3R:15556600-15556720 58 4.45e-05 ATATTAAGTC AGCAAACA TGACATTACG chr3R:13806784-13806904 109 4.45e-05 TGTTTTCAAT AGCAAACA CTTT chr3R:27167534-27167654 107 4.45e-05 GCACTCCGTA AGCGAACA TGGAGC chr3L:15220469-15220589 37 4.45e-05 ATTAAAATTG AGCAAACA AAATAATGCC chr3L:18079739-18079859 46 4.45e-05 TTAAACATGA AGCAAACA TACAGATTAT chr2L:16406640-16406760 23 6.50e-05 AAATGGGAAT AGCAACCA AAATTAATTA chr2R:13438392-13438512 27 6.50e-05 atacagtgac agccaaca aaatatgtcc chr2L:20936562-20936682 7 6.50e-05 CACTAC AGCAACCA ACTTTCTACG chr3R:22751274-22751394 67 6.84e-05 ATTGCCAAAA AGCCACCA AAAGTTCAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAMACA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22162308-22162428 1.1e-05 67_[+5]_45 chr2R:10474691-10474811 1.1e-05 9_[+5]_103 chr3L:2575338-2575458 1.1e-05 7_[+5]_105 chr2R:9557589-9557709 1.1e-05 7_[+5]_105 chr3R:21649572-21649692 1.1e-05 62_[+5]_50 chr3R:10530680-10530800 2e-05 6_[+5]_106 chr2L:18003142-18003262 2e-05 [+5]_112 chr2L:11968782-11968902 4.5e-05 73_[+5]_39 chr3R:15556600-15556720 4.5e-05 57_[+5]_55 chr3R:13806784-13806904 4.5e-05 108_[+5]_4 chr3R:27167534-27167654 4.5e-05 106_[+5]_6 chr3L:15220469-15220589 4.5e-05 36_[+5]_76 chr3L:18079739-18079859 4.5e-05 45_[+5]_67 chr2L:16406640-16406760 6.5e-05 22_[+5]_90 chr2R:13438392-13438512 6.5e-05 26_[+5]_86 chr2L:20936562-20936682 6.5e-05 6_[+5]_106 chr3R:22751274-22751394 6.8e-05 66_[+5]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAMACA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGCAMACA width=8 seqs=17 chr2R:22162308-22162428 ( 68) AGCACACA 1 chr2R:10474691-10474811 ( 10) AGCACACA 1 chr3L:2575338-2575458 ( 8) AGCGCACA 1 chr2R:9557589-9557709 ( 8) AGCACACA 1 chr3R:21649572-21649692 ( 63) AGCGCACA 1 chr3R:10530680-10530800 ( 7) AGCACCCA 1 chr2L:18003142-18003262 ( 1) AGCCCACA 1 chr2L:11968782-11968902 ( 74) AGCGAACA 1 chr3R:15556600-15556720 ( 58) AGCAAACA 1 chr3R:13806784-13806904 ( 109) AGCAAACA 1 chr3R:27167534-27167654 ( 107) AGCGAACA 1 chr3L:15220469-15220589 ( 37) AGCAAACA 1 chr3L:18079739-18079859 ( 46) AGCAAACA 1 chr2L:16406640-16406760 ( 23) AGCAACCA 1 chr2R:13438392-13438512 ( 27) AGCCAACA 1 chr2L:20936562-20936682 ( 7) AGCAACCA 1 chr3R:22751274-22751394 ( 67) AGCCACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAMACA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7672 E= 2.9e+004 154 -1073 -1073 -1073 -1073 -1073 273 -1073 -1073 269 -1073 -1073 77 19 65 -1073 77 141 -1073 -1073 115 61 -1073 -1073 -1073 269 -1073 -1073 154 -1073 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAMACA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 2.9e+004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.588235 0.176471 0.235294 0.000000 0.588235 0.411765 0.000000 0.000000 0.764706 0.235294 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAMACA MEME-5 regular expression -------------------------------------------------------------------------------- AGC[AG][AC][AC]CA -------------------------------------------------------------------------------- Time 32.47 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:4797736-4797856 3.92e-03 104_[+2(1.40e-05)]_8 chr3R:28623745-28623865 7.41e-01 120 chr3R:31295834-31295954 3.59e-01 120 chr3R:24906140-24906260 9.84e-01 120 chr2R:11048083-11048203 4.08e-05 12_[+1(6.89e-06)]_12_[+2(2.88e-05)]_\ 80 chr3L:21080602-21080722 3.69e-01 120 chr3R:16368460-16368580 5.06e-02 71_[+2(1.11e-05)]_41 chr3L:15005255-15005375 9.02e-01 120 chr3L:10928834-10928954 4.86e-01 120 chr2L:19317960-19318080 6.91e-01 120 chrX:11658567-11658687 3.05e-03 120 chr2L:21020177-21020297 1.67e-01 120 chr3L:16974659-16974779 7.95e-01 120 chr3R:29279757-29279877 8.61e-01 120 chr3L:2117129-2117249 2.70e-02 35_[+3(2.33e-05)]_77 chr2L:2432957-2433077 4.96e-01 120 chr3L:15258508-15258628 8.30e-01 120 chrX:17678148-17678268 3.26e-01 120 chr2R:20209410-20209530 2.37e-01 120 chrX:13238657-13238777 9.97e-01 120 chr2L:16590936-16591056 6.36e-01 120 chr3L:6371563-6371683 8.12e-03 107_[+1(1.05e-05)]_5 chr2L:19574592-19574712 1.64e-02 91_[+3(1.59e-05)]_21 chr2L:7611671-7611791 9.27e-01 120 chr3R:21931367-21931487 5.17e-02 1_[+3(2.05e-05)]_111 chrX:14073641-14073761 1.43e-03 2_[+1(3.49e-06)]_110 chrX:17679842-17679962 9.38e-01 120 chr2R:15740775-15740895 6.36e-01 120 chr2R:14317135-14317255 7.62e-01 120 chr3L:18079739-18079859 2.59e-01 45_[+5(4.45e-05)]_67 chr3L:10352204-10352324 2.81e-02 48_[+2(4.28e-06)]_64 chr2L:20463501-20463621 2.67e-01 120 chr3R:31768352-31768472 7.04e-01 120 chr3L:21042113-21042233 1.44e-02 14_[+1(6.89e-06)]_98 chr2L:16594007-16594127 5.73e-01 120 chr3R:18787363-18787483 8.70e-01 120 chrX:9466255-9466375 4.97e-03 83_[+2(4.28e-05)]_29 chr3R:8038063-8038183 9.13e-01 120 chr2R:14345495-14345615 4.78e-01 120 chr2R:14082291-14082411 1.09e-01 120 chrX:13541059-13541179 2.18e-03 100_[+2(6.85e-06)]_12 chr3L:5941274-5941394 7.10e-01 120 chr3L:12030664-12030784 3.20e-01 120 chr2L:2944669-2944789 1.53e-01 120 chr3L:16873273-16873393 7.05e-01 120 chr3R:14292372-14292492 7.35e-01 120 chr2L:4211403-4211523 9.20e-01 120 chr3L:817856-817976 9.00e-01 120 chr2L:9231902-9232022 3.81e-02 120 chr3R:27199547-27199667 1.12e-01 120 chrX:17582009-17582129 7.88e-01 120 chr3L:8448681-8448801 1.58e-02 120 chr3R:22140148-22140268 8.51e-03 71_[+1(7.27e-05)]_41 chr2R:7912187-7912307 2.00e-01 120 chrX:12000373-12000493 8.17e-01 120 chr2R:11755315-11755435 9.85e-01 120 chr3R:21649572-21649692 3.57e-02 62_[+5(1.11e-05)]_50 chr3R:29280815-29280935 6.24e-02 120 chr3L:10928046-10928166 1.34e-01 5_[+1(3.44e-05)]_107 chr2R:17077052-17077172 3.98e-01 120 chr3L:16748514-16748634 2.03e-01 95_[+1(2.66e-05)]_17 chr2R:18800255-18800375 7.95e-01 120 chr2R:7531282-7531402 1.78e-01 120 chr3L:10709235-10709355 3.87e-03 105_[+3(6.72e-07)]_7 chr3R:31680051-31680171 8.95e-01 120 chr2L:7513821-7513941 3.52e-01 120 chr2R:13461295-13461415 4.26e-02 20_[+2(3.46e-05)]_92 chr3L:8782120-8782240 8.29e-01 120 chr3L:1900824-1900944 9.68e-01 120 chr3R:22751274-22751394 4.05e-03 14_[+2(3.46e-05)]_44_[+5(6.84e-05)]_\ 46 chrX:5924477-5924597 3.30e-02 120 chr2L:19162830-19162950 6.34e-01 120 chrX:4175960-4176080 4.12e-01 120 chr2R:7767408-7767528 9.63e-01 120 chr2L:5483234-5483354 4.84e-01 120 chr3L:2549078-2549198 3.09e-02 120 chr3R:14917970-14918090 6.50e-01 120 chr3R:24910265-24910385 6.21e-01 120 chr3R:9420971-9421091 7.55e-02 120 chr3L:15641615-15641735 6.36e-04 28_[+3(2.64e-05)]_17_[+1(3.44e-05)]_\ 59 chr3R:21830518-21830638 4.38e-02 80_[+2(1.40e-05)]_32 chr2R:9557589-9557709 2.38e-03 7_[+5(1.11e-05)]_105 chr3R:19075244-19075364 7.29e-01 120 chr3L:787762-787882 7.74e-01 120 chr3L:14451703-14451823 9.78e-01 120 chr2R:23306072-23306192 9.97e-01 120 chr3L:15252596-15252716 7.13e-01 120 chr2L:20936562-20936682 2.40e-01 6_[+5(6.50e-05)]_106 chr2R:12733001-12733121 6.76e-01 120 chr3L:2575338-2575458 4.42e-02 7_[+5(1.11e-05)]_105 chr3L:6482992-6483112 5.32e-01 120 chrX:15320642-15320762 4.26e-01 120 chr3R:9935021-9935141 3.06e-03 68_[+2(4.28e-06)]_44 chr2L:18003142-18003262 1.49e-01 [+5(1.96e-05)]_112 chr3R:11806875-11806995 2.75e-03 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chr3R:31329979-31330099 9.59e-02 8_[+1(7.27e-05)]_104 chrX:18256663-18256783 2.75e-02 61_[+3(4.60e-05)]_51 chrX:5082419-5082539 4.17e-01 120 chr2R:10213669-10213789 4.63e-01 120 chr3R:31762820-31762940 7.37e-01 120 chr2R:19420462-19420582 7.41e-01 120 chr2R:15745305-15745425 5.16e-01 120 chr2L:18341075-18341195 6.53e-01 120 chr3R:16119563-16119683 7.00e-01 120 chr2L:20802379-20802499 1.76e-02 83_[+1(1.05e-05)]_29 chr3R:29875884-29876004 5.69e-01 120 chr2L:10677455-10677575 3.43e-01 120 chr2L:16406640-16406760 1.47e-01 22_[+5(6.50e-05)]_90 chr3L:8014026-8014146 1.92e-01 92_[+2(4.72e-05)]_20 chr3R:18669885-18670005 1.22e-02 95_[+2(9.80e-06)]_17 chr2L:6197912-6198032 1.10e-01 120 chr3R:10530680-10530800 3.14e-02 6_[+5(1.96e-05)]_106 chr3L:2386585-2386705 5.02e-01 120 chr3R:23508434-23508554 5.35e-01 120 chr2L:5429254-5429374 6.63e-01 120 chr2R:8240836-8240956 6.40e-01 120 chr2L:11968782-11968902 7.67e-03 73_[+5(4.45e-05)]_39 chr2L:20371567-20371687 5.76e-01 120 chr3L:12058554-12058674 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chr2L:7146060-7146180 6.87e-01 120 chrX:9047125-9047245 8.55e-01 120 chrX:1826165-1826285 4.43e-03 120 chr3L:13495188-13495308 1.69e-01 120 chr3L:4545817-4545937 6.17e-04 14_[+3(3.31e-06)]_98 chr2L:249730-249850 1.44e-01 103_[+1(2.66e-05)]_9 chrX:13679726-13679846 9.60e-01 120 chr2R:11748407-11748527 2.77e-01 120 chr3L:15693201-15693321 6.85e-01 120 chr2L:13613803-13613923 9.52e-01 120 chr2R:11094484-11094604 2.71e-02 96_[+2(4.28e-06)]_4_[+2(2.53e-05)]_\ 4 chr3R:29786555-29786675 7.14e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************