******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG11723.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:4594392-4594512 1.0000 120 chr2L:22756418-22756538 1.0000 120 chr2R:2565420-2565540 1.0000 120 chr2R:1070757-1070877 1.0000 120 chr4:868052-868172 1.0000 120 chr2R:4615472-4615592 1.0000 120 chr2R:24057157-24057277 1.0000 120 chr3R:566820-566940 1.0000 120 chr4:306731-306851 1.0000 120 chr4:129817-129937 1.0000 120 chr2R:5260670-5260790 1.0000 120 chr4:181786-181906 1.0000 120 chr2R:5363399-5363519 1.0000 120 chr2R:4247775-4247895 1.0000 120 chr2R:24057410-24057530 1.0000 120 chr4:610527-610647 1.0000 120 chr2L:22579045-22579165 1.0000 120 chr2R:5353003-5353123 1.0000 120 chr4:1063089-1063209 1.0000 120 chr2L:22982329-22982449 1.0000 120 chr3L:23714878-23714998 1.0000 120 chr2R:5350608-5350728 1.0000 120 chr3L:28012657-28012777 1.0000 120 chr3L:23150476-23150596 1.0000 120 chr2R:5691808-5691928 1.0000 120 chr3R:3734767-3734887 1.0000 120 chr2R:4544664-4544784 1.0000 120 chr4:194090-194210 1.0000 120 chr2L:23069287-23069407 1.0000 120 chr4:853458-853578 1.0000 120 chr4:958433-958553 1.0000 120 chr2R:4827437-4827557 1.0000 120 chr2R:5129588-5129708 1.0000 120 chr3L:27264674-27264794 1.0000 120 chr2R:5144590-5144710 1.0000 120 chr3L:27136380-27136500 1.0000 120 chr4:959552-959672 1.0000 120 chr2R:1527034-1527154 1.0000 120 chr2R:5090498-5090618 1.0000 120 chr2R:4546541-4546661 1.0000 120 chr2R:4471360-4471480 1.0000 120 chr2L:10239118-10239238 1.0000 120 chr4:180856-180976 1.0000 120 chr2R:4130879-4130999 1.0000 120 chr2L:22538127-22538247 1.0000 120 chr4:46597-46717 1.0000 120 chr2R:5251100-5251220 1.0000 120 chr4:1219191-1219311 1.0000 120 chr3R:3789732-3789852 1.0000 120 chr2L:22574426-22574546 1.0000 120 chr4:130018-130138 1.0000 120 chr4:695994-696114 1.0000 120 chr2R:4788704-4788824 1.0000 120 chr2R:5354400-5354520 1.0000 120 chr3L:27858288-27858408 1.0000 120 chr2R:5307076-5307196 1.0000 120 chr2R:4471150-4471270 1.0000 120 chr4:936436-936556 1.0000 120 chr3R:3750257-3750377 1.0000 120 chr2R:4595177-4595297 1.0000 120 chr4:193890-194010 1.0000 120 chr2R:4824291-4824411 1.0000 120 chr4:1008603-1008723 1.0000 120 chr2L:22239764-22239884 1.0000 120 chr2R:1070957-1071077 1.0000 120 chr2L:23314571-23314691 1.0000 120 chr3L:24028378-24028498 1.0000 120 chr3R:4172990-4173110 1.0000 120 chr2R:4616574-4616694 1.0000 120 chr2L:22131280-22131400 1.0000 120 chr2R:5671515-5671635 1.0000 120 chr2L:10423104-10423224 1.0000 120 chr2L:22981721-22981841 1.0000 120 chr2L:22550207-22550327 1.0000 120 chr2R:1264249-1264369 1.0000 120 chr3L:26012660-26012780 1.0000 120 chr3L:23125840-23125960 1.0000 120 chr3L:23099551-23099671 1.0000 120 chr2R:5360055-5360175 1.0000 120 chr4:1148121-1148241 1.0000 120 chr2R:4671742-4671862 1.0000 120 chr4:47254-47374 1.0000 120 chr2R:5363195-5363315 1.0000 120 chr3R:4175809-4175929 1.0000 120 chr2R:5341008-5341128 1.0000 120 chr2L:23176130-23176250 1.0000 120 chr4:1197893-1198013 1.0000 120 chr4:572592-572712 1.0000 120 chr3L:27279167-27279287 1.0000 120 chr2R:4593710-4593830 1.0000 120 chr3L:24976122-24976242 1.0000 120 chr2R:4188134-4188254 1.0000 120 chr2R:4729051-4729171 1.0000 120 chr2R:4618871-4618991 1.0000 120 chr2R:5305788-5305908 1.0000 120 chr4:1146522-1146642 1.0000 120 chr3L:24537244-24537364 1.0000 120 chr3R:3734038-3734158 1.0000 120 chr2R:5125830-5125950 1.0000 120 chr3R:3623006-3623126 1.0000 120 chr3L:27083962-27084082 1.0000 120 chr2L:23174386-23174506 1.0000 120 chr3L:25120608-25120728 1.0000 120 chr3L:26014050-26014170 1.0000 120 chr3R:4403351-4403471 1.0000 120 chr2R:5604859-5604979 1.0000 120 chr4:44920-45040 1.0000 120 chr2L:10227104-10227224 1.0000 120 chr2R:5664452-5664572 1.0000 120 chr3L:23147403-23147523 1.0000 120 chr2L:23068393-23068513 1.0000 120 chr3L:23150676-23150796 1.0000 120 chr2R:4272504-4272624 1.0000 120 chr4:445429-445549 1.0000 120 chr4:276551-276671 1.0000 120 chr2R:4729255-4729375 1.0000 120 chr3L:27084170-27084290 1.0000 120 chr4:210138-210258 1.0000 120 chr2R:4788910-4789030 1.0000 120 chr3R:4175060-4175180 1.0000 120 chr4:588584-588704 1.0000 120 chr2R:5670527-5670647 1.0000 120 chr2L:22249703-22249823 1.0000 120 chr4:313851-313971 1.0000 120 chr2R:4013998-4014118 1.0000 120 chr3L:23279203-23279323 1.0000 120 chr2R:4829132-4829252 1.0000 120 chr4:68558-68678 1.0000 120 chr4:663198-663318 1.0000 120 chr4:959774-959894 1.0000 120 chr2R:5251299-5251419 1.0000 120 chr2R:5126602-5126722 1.0000 120 chr4:132048-132168 1.0000 120 chr4:1156372-1156492 1.0000 120 chr3L:23258632-23258752 1.0000 120 chr2R:999963-1000083 1.0000 120 chrX:21630315-21630435 1.0000 120 chr4:1051438-1051558 1.0000 120 chr2R:4243016-4243136 1.0000 120 chr2R:5651839-5651959 1.0000 120 chr2R:4744203-4744323 1.0000 120 chr3R:4400087-4400207 1.0000 120 chr2R:5293901-5294021 1.0000 120 chr2R:1590425-1590545 1.0000 120 chr2R:5413538-5413658 1.0000 120 chr4:458771-458891 1.0000 120 chr2L:22169204-22169324 1.0000 120 chr3R:3734967-3735087 1.0000 120 chr2R:1345147-1345267 1.0000 120 chr4:314795-314915 1.0000 120 chr4:771275-771395 1.0000 120 chr3R:7080362-7080482 1.0000 120 chr2R:4827641-4827761 1.0000 120 chr4:205976-206096 1.0000 120 chr4:904878-904998 1.0000 120 chr3L:23338081-23338201 1.0000 120 chr3R:4400290-4400410 1.0000 120 chr3L:25115935-25116055 1.0000 120 chr2R:2495737-2495857 1.0000 120 chr4:787583-787703 1.0000 120 chr4:179416-179536 1.0000 120 chr4:663406-663526 1.0000 120 chr2R:2846708-2846828 1.0000 120 chr3L:23580687-23580807 1.0000 120 chr2R:5304188-5304308 1.0000 120 chr2R:5701946-5702066 1.0000 120 chr2R:5697701-5697821 1.0000 120 chr3R:3846680-3846800 1.0000 120 chr2R:5663803-5663923 1.0000 120 chr3L:27859400-27859520 1.0000 120 chr2R:4261550-4261670 1.0000 120 chr2R:5652816-5652936 1.0000 120 chr4:570833-570953 1.0000 120 chr4:1027803-1027923 1.0000 120 chr2R:4012726-4012846 1.0000 120 chr4:43016-43136 1.0000 120 chr4:1123891-1124011 1.0000 120 chr2L:22247818-22247938 1.0000 120 chr3R:3843087-3843207 1.0000 120 chr3R:3586587-3586707 1.0000 120 chr4:1181844-1181964 1.0000 120 chr4:961132-961252 1.0000 120 chr4:1060921-1061041 1.0000 120 chrX:10320595-10320715 1.0000 120 chr3L:23123747-23123867 1.0000 120 chr4:671023-671143 1.0000 120 chr4:660641-660761 1.0000 120 chr2R:4549681-4549801 1.0000 120 chr2L:22924669-22924789 1.0000 120 chr2L:23173104-23173224 1.0000 120 chr2L:22980933-22981053 1.0000 120 chr4:182500-182620 1.0000 120 chr2R:5354599-5354719 1.0000 120 chr2L:10314401-10314521 1.0000 120 chr4:1230736-1230856 1.0000 120 chr2R:1345348-1345468 1.0000 120 chr4:307997-308117 1.0000 120 chr2L:10226893-10227013 1.0000 120 chr4:1196949-1197069 1.0000 120 chr3L:26015268-26015388 1.0000 120 chr2L:10221129-10221249 1.0000 120 chr4:468185-468305 1.0000 120 chr4:695245-695365 1.0000 120 chr3L:23124467-23124587 1.0000 120 chr2R:5671717-5671837 1.0000 120 chr4:888086-888206 1.0000 120 chr2R:4544865-4544985 1.0000 120 chr2R:1347115-1347235 1.0000 120 chr3L:27134372-27134492 1.0000 120 chr2L:22130004-22130124 1.0000 120 chr2L:23075666-23075786 1.0000 120 chr4:444232-444352 1.0000 120 chr2L:22751483-22751603 1.0000 120 chr3R:3748666-3748786 1.0000 120 chr3L:27267113-27267233 1.0000 120 chr2L:10366582-10366702 1.0000 120 chr2R:5695523-5695643 1.0000 120 chr2R:3500675-3500795 1.0000 120 chr4:290625-290745 1.0000 120 chr2L:22121704-22121824 1.0000 120 chr2R:5530073-5530193 1.0000 120 chr3R:4174519-4174639 1.0000 120 chr3L:23096923-23097043 1.0000 120 chr2L:10314613-10314733 1.0000 120 chr2L:22169404-22169524 1.0000 120 chr3L:27082938-27083058 1.0000 120 chr4:867059-867179 1.0000 120 chr2R:4596894-4597014 1.0000 120 chr2R:5341207-5341327 1.0000 120 chr3L:25108883-25109003 1.0000 120 chr3L:23339222-23339342 1.0000 120 chr2L:23313607-23313727 1.0000 120 chr2L:22536930-22537050 1.0000 120 chr2R:24029204-24029324 1.0000 120 chr4:930732-930852 1.0000 120 chr2R:5609063-5609183 1.0000 120 chr2R:4243222-4243342 1.0000 120 chr3L:24536094-24536214 1.0000 120 chr3L:25119588-25119708 1.0000 120 chr4:359815-359935 1.0000 120 chr3L:20001005-20001125 1.0000 120 chr3L:25230166-25230286 1.0000 120 chr4:1061134-1061254 1.0000 120 chr2R:5416564-5416684 1.0000 120 chr4:43790-43910 1.0000 120 chr3L:20000331-20000451 1.0000 120 chr3R:7081981-7082101 1.0000 120 chr2R:5259073-5259193 1.0000 120 chr2R:4270841-4270961 1.0000 120 chr2R:5128317-5128437 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG11723/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG11723.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.311 C 0.197 G 0.19 T 0.302 Background letter frequencies (from file dataset with add-one prior applied): A 0.311 C 0.197 G 0.19 T 0.302 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGGCAGC MEME-1 width = 8 sites = 14 llr = 149 E-value = 9.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGCAGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::9:: pos.-specific C 171:a::a probability G 9199:1a: matrix T :1:1:::: bits 2.4 * ** 2.2 * ** 1.9 * ** ** 1.7 * *** ** Relative 1.4 * ****** Entropy 1.2 ******** (15.3 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGGCAGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:5413538-5413658 20 3.10e-06 TTGTGAGGTT GCGGCAGC TCTAGACTCG chr4:588584-588704 80 3.10e-06 ACACATTTCT GCGGCAGC GTTCCGGTTG chr3R:4172990-4173110 2 3.10e-06 C GCGGCAGC TTTCAATTTG chr2R:5353003-5353123 69 3.10e-06 ccgagccctt gcggcagc cctcgaacat chr2R:1070757-1070877 81 3.10e-06 CGTCTGGACT GCGGCAGC GCCGACCAAA chr4:1123891-1124011 46 6.09e-06 TAACCCCTTG GGGGCAGC CTTTCTAGGT chr2R:5651839-5651959 27 6.09e-06 TTGTGAAACT GGGGCAGC ACGCGCTATT chr2L:23075666-23075786 60 9.30e-06 AAgtgcctct gccgcagc gctcgacaga chr2R:5691808-5691928 15 9.30e-06 agaagccgaa gccgcagc ctcagctgcC chr3L:23580687-23580807 111 1.41e-05 TCGATCCGAT GTGGCAGC AT chr4:180856-180976 67 1.41e-05 acttccgcct gtggcagc tttcttatac chr3R:4175809-4175929 98 1.59e-05 TTGGAGACGG GCGGCGGC AGTAGCGTCT chr2R:1264249-1264369 96 1.92e-05 CATGGTAATG CCGGCAGC TTGACGATTT chr2R:4247775-4247895 86 2.41e-05 AAAAACCACA GCGTCAGC TCCCGACAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:5413538-5413658 3.1e-06 19_[+1]_93 chr4:588584-588704 3.1e-06 79_[+1]_33 chr3R:4172990-4173110 3.1e-06 1_[+1]_111 chr2R:5353003-5353123 3.1e-06 68_[+1]_44 chr2R:1070757-1070877 3.1e-06 80_[+1]_32 chr4:1123891-1124011 6.1e-06 45_[+1]_67 chr2R:5651839-5651959 6.1e-06 26_[+1]_86 chr2L:23075666-23075786 9.3e-06 59_[+1]_53 chr2R:5691808-5691928 9.3e-06 14_[+1]_98 chr3L:23580687-23580807 1.4e-05 110_[+1]_2 chr4:180856-180976 1.4e-05 66_[+1]_46 chr3R:4175809-4175929 1.6e-05 97_[+1]_15 chr2R:1264249-1264369 1.9e-05 95_[+1]_17 chr2R:4247775-4247895 2.4e-05 85_[+1]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGCAGC width=8 seqs=14 chr2R:5413538-5413658 ( 20) GCGGCAGC 1 chr4:588584-588704 ( 80) GCGGCAGC 1 chr3R:4172990-4173110 ( 2) GCGGCAGC 1 chr2R:5353003-5353123 ( 69) GCGGCAGC 1 chr2R:1070757-1070877 ( 81) GCGGCAGC 1 chr4:1123891-1124011 ( 46) GGGGCAGC 1 chr2R:5651839-5651959 ( 27) GGGGCAGC 1 chr2L:23075666-23075786 ( 60) GCCGCAGC 1 chr2R:5691808-5691928 ( 15) GCCGCAGC 1 chr3L:23580687-23580807 ( 111) GTGGCAGC 1 chr4:180856-180976 ( 67) GTGGCAGC 1 chr3R:4175809-4175929 ( 98) GCGGCGGC 1 chr2R:1264249-1264369 ( 96) CCGGCAGC 1 chr2R:4247775-4247895 ( 86) GCGTCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2007 E= 9.7e-002 -1045 -146 229 -1045 -1045 185 -41 -108 -1045 -47 217 -1045 -1045 -1045 229 -207 -1045 234 -1045 -1045 158 -1045 -141 -1045 -1045 -1045 240 -1045 -1045 234 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 9.7e-002 0.000000 0.071429 0.928571 0.000000 0.000000 0.714286 0.142857 0.142857 0.000000 0.142857 0.857143 0.000000 0.000000 0.000000 0.928571 0.071429 0.000000 1.000000 0.000000 0.000000 0.928571 0.000000 0.071429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGCAGC MEME-1 regular expression -------------------------------------------------------------------------------- GCGGCAGC -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF TGWGHGCG MEME-2 width = 8 sites = 13 llr = 133 E-value = 1.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGWGHGCG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::5:5::: pos.-specific C ::::3:a: probability G :a:a:a:a matrix T a:5:2::: bits 2.4 * * *** 2.2 * * *** 1.9 * * *** 1.7 ** * *** Relative 1.4 ** * *** Entropy 1.2 ** * *** (14.7 bits) 1.0 ** * *** 0.7 **** *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTGAGCG consensus A C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGHGCG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:27082938-27083058 15 1.19e-05 ttttaaaaaa tgtgcgcg cggtaatttt chr2L:22751483-22751603 79 1.19e-05 GGGACAGAAG TGTGCGCG TTGCCAACAT chr3L:23123747-23123867 103 1.19e-05 tgcatccggg tgtgcgcg cacccgaatc chr2R:4261550-4261670 25 1.19e-05 TAATAATGtg tgtgagcg tggcgtctta chr2R:2495737-2495857 72 1.19e-05 agcacccggt tgtgcgcg cacccgaatc chr3L:23279203-23279323 43 1.19e-05 ttcattaaag tgtgagcg tgaccgtttc chr2R:5125830-5125950 28 2.41e-05 tgagtaaaat tgagagcg gtataaaatc chr4:853458-853578 38 2.41e-05 GCTCGGCGAC TGAGAGCG TCGGCTTAGC chr4:181786-181906 43 2.41e-05 GCTCGGCGAC TGAGAGCG TCTGGTTAGC chr4:306731-306851 8 2.41e-05 ttttgtt tgagagcg agagagcgaa chr2R:5530073-5530193 110 3.12e-05 aacgtgtata tgtgtgcg ttt chr2R:5671717-5671837 42 3.85e-05 AATACCATTT TGAGTGCG ACGGTCACAC chr2R:4549681-4549801 86 3.85e-05 tcaacaattt tgagtgcg ggtgccactc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGHGCG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:27082938-27083058 1.2e-05 14_[+2]_98 chr2L:22751483-22751603 1.2e-05 78_[+2]_34 chr3L:23123747-23123867 1.2e-05 102_[+2]_10 chr2R:4261550-4261670 1.2e-05 24_[+2]_88 chr2R:2495737-2495857 1.2e-05 71_[+2]_41 chr3L:23279203-23279323 1.2e-05 42_[+2]_70 chr2R:5125830-5125950 2.4e-05 27_[+2]_85 chr4:853458-853578 2.4e-05 37_[+2]_75 chr4:181786-181906 2.4e-05 42_[+2]_70 chr4:306731-306851 2.4e-05 7_[+2]_105 chr2R:5530073-5530193 3.1e-05 109_[+2]_3 chr2R:5671717-5671837 3.8e-05 41_[+2]_71 chr2R:4549681-4549801 3.8e-05 85_[+2]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGHGCG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGWGHGCG width=8 seqs=13 chr3L:27082938-27083058 ( 15) TGTGCGCG 1 chr2L:22751483-22751603 ( 79) TGTGCGCG 1 chr3L:23123747-23123867 ( 103) TGTGCGCG 1 chr2R:4261550-4261670 ( 25) TGTGAGCG 1 chr2R:2495737-2495857 ( 72) TGTGCGCG 1 chr3L:23279203-23279323 ( 43) TGTGAGCG 1 chr2R:5125830-5125950 ( 28) TGAGAGCG 1 chr4:853458-853578 ( 38) TGAGAGCG 1 chr4:181786-181906 ( 43) TGAGAGCG 1 chr4:306731-306851 ( 8) TGAGAGCG 1 chr2R:5530073-5530193 ( 110) TGTGTGCG 1 chr2R:5671717-5671837 ( 42) TGAGTGCG 1 chr2R:4549681-4549801 ( 86) TGAGTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGHGCG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6156 E= 1.3e+003 -1035 -1035 -1035 173 -1035 -1035 239 -1035 57 -1035 -1035 84 -1035 -1035 239 -1035 57 64 -1035 -39 -1035 -1035 239 -1035 -1035 234 -1035 -1035 -1035 -1035 239 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGHGCG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.3e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.461538 0.000000 0.000000 0.538462 0.000000 0.000000 1.000000 0.000000 0.461538 0.307692 0.000000 0.230769 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGWGHGCG MEME-2 regular expression -------------------------------------------------------------------------------- TG[TA]G[ACT]GCG -------------------------------------------------------------------------------- Time 13.67 secs. ******************************************************************************** ******************************************************************************** MOTIF GSGCGTGG MEME-3 width = 8 sites = 3 llr = 36 E-value = 4.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSGCGTGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :3:a:::: probability G a7a:a:aa matrix T :::::a:: bits 2.4 * *** ** 2.2 * *** ** 1.9 * *** ** 1.7 * ****** Relative 1.4 ******** Entropy 1.2 ******** (17.5 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGCGTGG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCGTGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:27082938-27083058 55 2.80e-06 gcgtaagagt gggcgtgg caaaaagttt chr4:1008603-1008723 101 2.80e-06 AGCCTAAGGA GGGCGTGG CCAAAGTGTT chr3R:4172990-4173110 52 5.70e-06 CACCTTTTTT GCGCGTGG CCAACCTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCGTGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:27082938-27083058 2.8e-06 54_[+3]_58 chr4:1008603-1008723 2.8e-06 100_[+3]_12 chr3R:4172990-4173110 5.7e-06 51_[+3]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCGTGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSGCGTGG width=8 seqs=3 chr3L:27082938-27083058 ( 55) GGGCGTGG 1 chr4:1008603-1008723 ( 101) GGGCGTGG 1 chr3R:4172990-4173110 ( 52) GCGCGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCGTGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 4.9e+004 -823 -823 239 -823 -823 75 181 -823 -823 -823 239 -823 -823 234 -823 -823 -823 -823 239 -823 -823 -823 -823 173 -823 -823 239 -823 -823 -823 239 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCGTGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 4.9e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSGCGTGG MEME-3 regular expression -------------------------------------------------------------------------------- G[GC]GCGTGG -------------------------------------------------------------------------------- Time 19.91 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGGGTG MEME-4 width = 8 sites = 2 llr = 25 E-value = 2.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGGGTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:a::::: probability G :a:aaa:a matrix T ::::::a: bits 2.4 ****** * 2.2 ****** * 1.9 ****** * 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.4 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCGGGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGGTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:2495737-2495857 107 2.90e-06 cactctgcgt cgcgggtg ccgctc chr2L:22982329-22982449 11 2.90e-06 GAGCATCGCA CGCGGGTG GGAGCGGTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGGTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:2495737-2495857 2.9e-06 106_[+4]_6 chr2L:22982329-22982449 2.9e-06 10_[+4]_102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGGTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGGGTG width=8 seqs=2 chr2R:2495737-2495857 ( 107) CGCGGGTG 1 chr2L:22982329-22982449 ( 11) CGCGGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGGTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.4e+004 -765 234 -765 -765 -765 -765 239 -765 -765 234 -765 -765 -765 -765 239 -765 -765 -765 239 -765 -765 -765 239 -765 -765 -765 -765 172 -765 -765 239 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGGTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.4e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGGTG MEME-4 regular expression -------------------------------------------------------------------------------- CGCGGGTG -------------------------------------------------------------------------------- Time 26.13 secs. ******************************************************************************** ******************************************************************************** MOTIF GCKCGGCG MEME-5 width = 8 sites = 2 llr = 24 E-value = 8.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCKCGGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:a::a: probability G a:5:aa:a matrix T ::5::::: bits 2.4 ** ***** 2.2 ** ***** 1.9 ** ***** 1.7 ** ***** Relative 1.4 ** ***** Entropy 1.2 ** ***** (17.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCGGCG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKCGGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:4175060-4175180 53 1.89e-06 GGCTCTGTCT GCGCGGCG AGAAATATCC chr4:853458-853578 28 4.90e-06 CGATGCATGC GCTCGGCG ACTGAGAGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKCGGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:4175060-4175180 1.9e-06 52_[+5]_60 chr4:853458-853578 4.9e-06 27_[+5]_85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKCGGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCKCGGCG width=8 seqs=2 chr3R:4175060-4175180 ( 53) GCGCGGCG 1 chr4:853458-853578 ( 28) GCTCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKCGGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 8.3e+004 -765 -765 239 -765 -765 234 -765 -765 -765 -765 139 73 -765 234 -765 -765 -765 -765 239 -765 -765 -765 239 -765 -765 234 -765 -765 -765 -765 239 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKCGGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 8.3e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKCGGCG MEME-5 regular expression -------------------------------------------------------------------------------- GC[GT]CGGCG -------------------------------------------------------------------------------- Time 32.36 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:4594392-4594512 1.73e-01 120 chr2L:22756418-22756538 4.91e-04 120 chr2R:2565420-2565540 1.00e+00 120 chr2R:1070757-1070877 1.87e-02 80_[+1(3.10e-06)]_32 chr4:868052-868172 7.46e-01 120 chr2R:4615472-4615592 2.42e-01 120 chr2R:24057157-24057277 2.72e-01 120 chr3R:566820-566940 4.37e-02 120 chr4:306731-306851 3.21e-02 7_[+2(2.41e-05)]_105 chr4:129817-129937 2.95e-01 120 chr2R:5260670-5260790 5.35e-01 120 chr4:181786-181906 3.56e-05 32_[+5(4.90e-06)]_2_[+2(2.41e-05)]_\ 70 chr2R:5363399-5363519 3.81e-01 120 chr2R:4247775-4247895 5.51e-05 52_[+5(6.54e-05)]_25_[+1(2.41e-05)]_\ 27 chr2R:24057410-24057530 9.17e-01 120 chr4:610527-610647 8.76e-01 120 chr2L:22579045-22579165 8.60e-01 120 chr2R:5353003-5353123 1.24e-03 68_[+1(3.10e-06)]_44 chr4:1063089-1063209 1.27e-01 120 chr2L:22982329-22982449 8.95e-06 10_[+4(2.90e-06)]_102 chr3L:23714878-23714998 9.92e-01 120 chr2R:5350608-5350728 9.88e-01 120 chr3L:28012657-28012777 9.79e-01 120 chr3L:23150476-23150596 1.00e+00 120 chr2R:5691808-5691928 1.82e-03 14_[+1(9.30e-06)]_98 chr3R:3734767-3734887 3.59e-01 120 chr2R:4544664-4544784 3.82e-01 120 chr4:194090-194210 1.00e+00 120 chr2L:23069287-23069407 1.13e-01 120 chr4:853458-853578 5.98e-06 27_[+5(4.90e-06)]_2_[+2(2.41e-05)]_\ 75 chr4:958433-958553 9.96e-01 120 chr2R:4827437-4827557 8.86e-01 120 chr2R:5129588-5129708 1.79e-01 120 chr3L:27264674-27264794 2.53e-01 120 chr2R:5144590-5144710 7.54e-01 120 chr3L:27136380-27136500 9.91e-01 120 chr4:959552-959672 2.97e-01 120 chr2R:1527034-1527154 9.40e-01 120 chr2R:5090498-5090618 6.84e-01 120 chr2R:4546541-4546661 4.31e-01 120 chr2R:4471360-4471480 1.00e+00 120 chr2L:10239118-10239238 1.00e+00 120 chr4:180856-180976 2.16e-02 66_[+1(1.41e-05)]_46 chr2R:4130879-4130999 8.70e-01 120 chr2L:22538127-22538247 9.54e-01 120 chr4:46597-46717 6.23e-01 120 chr2R:5251100-5251220 9.03e-01 120 chr4:1219191-1219311 3.80e-01 120 chr3R:3789732-3789852 3.12e-01 120 chr2L:22574426-22574546 1.27e-01 120 chr4:130018-130138 9.97e-01 120 chr4:695994-696114 1.14e-01 120 chr2R:4788704-4788824 8.97e-01 120 chr2R:5354400-5354520 2.48e-02 59_[+3(9.23e-05)]_53 chr3L:27858288-27858408 1.00e+00 120 chr2R:5307076-5307196 1.00e+00 120 chr2R:4471150-4471270 6.65e-01 120 chr4:936436-936556 4.34e-01 120 chr3R:3750257-3750377 5.07e-01 120 chr2R:4595177-4595297 9.99e-01 120 chr4:193890-194010 7.88e-01 120 chr2R:4824291-4824411 4.26e-01 120 chr4:1008603-1008723 3.35e-05 85_[+1(7.95e-05)]_7_[+3(2.80e-06)]_\ 12 chr2L:22239764-22239884 5.93e-01 120 chr2R:1070957-1071077 9.06e-01 120 chr2L:23314571-23314691 9.92e-01 120 chr3L:24028378-24028498 7.71e-01 120 chr3R:4172990-4173110 1.22e-07 1_[+1(3.10e-06)]_42_[+3(5.70e-06)]_\ 51_[+2(6.28e-05)]_2 chr2R:4616574-4616694 1.70e-01 120 chr2L:22131280-22131400 4.17e-01 120 chr2R:5671515-5671635 9.48e-01 120 chr2L:10423104-10423224 3.29e-01 120 chr2L:22981721-22981841 6.81e-01 120 chr2L:22550207-22550327 9.80e-01 120 chr2R:1264249-1264369 5.92e-02 95_[+1(1.92e-05)]_17 chr3L:26012660-26012780 2.11e-02 120 chr3L:23125840-23125960 9.92e-01 120 chr3L:23099551-23099671 9.16e-01 120 chr2R:5360055-5360175 9.76e-01 120 chr4:1148121-1148241 6.82e-01 120 chr2R:4671742-4671862 9.99e-01 120 chr4:47254-47374 4.85e-01 120 chr2R:5363195-5363315 9.99e-01 120 chr3R:4175809-4175929 5.25e-05 16_[+5(6.54e-05)]_73_[+1(1.59e-05)]_\ 15 chr2R:5341008-5341128 1.00e+00 120 chr2L:23176130-23176250 6.02e-01 120 chr4:1197893-1198013 9.92e-01 120 chr4:572592-572712 3.27e-02 59_[+5(6.54e-05)]_53 chr3L:27279167-27279287 9.98e-01 120 chr2R:4593710-4593830 8.88e-02 120 chr3L:24976122-24976242 9.22e-01 120 chr2R:4188134-4188254 1.46e-02 120 chr2R:4729051-4729171 5.32e-01 120 chr2R:4618871-4618991 9.94e-01 120 chr2R:5305788-5305908 4.64e-03 6_[+4(9.51e-05)]_106 chr4:1146522-1146642 2.62e-03 49_[+2(9.03e-05)]_63 chr3L:24537244-24537364 8.76e-01 120 chr3R:3734038-3734158 3.24e-01 120 chr2R:5125830-5125950 3.48e-02 27_[+2(2.41e-05)]_85 chr3R:3623006-3623126 6.85e-01 120 chr3L:27083962-27084082 1.00e+00 120 chr2L:23174386-23174506 8.37e-01 120 chr3L:25120608-25120728 1.64e-01 120 chr3L:26014050-26014170 2.55e-01 120 chr3R:4403351-4403471 3.40e-03 16_[+5(6.54e-05)]_96 chr2R:5604859-5604979 9.49e-01 120 chr4:44920-45040 7.21e-01 120 chr2L:10227104-10227224 9.99e-01 120 chr2R:5664452-5664572 6.40e-01 120 chr3L:23147403-23147523 2.52e-02 120 chr2L:23068393-23068513 9.84e-01 120 chr3L:23150676-23150796 9.83e-01 120 chr2R:4272504-4272624 1.66e-01 120 chr4:445429-445549 9.64e-01 120 chr4:276551-276671 4.13e-01 120 chr2R:4729255-4729375 6.99e-01 120 chr3L:27084170-27084290 1.00e+00 120 chr4:210138-210258 5.53e-01 120 chr2R:4788910-4789030 8.81e-01 120 chr3R:4175060-4175180 2.94e-05 52_[+5(1.89e-06)]_35_[+1(7.25e-05)]_\ 17 chr4:588584-588704 3.27e-04 79_[+1(3.10e-06)]_33 chr2R:5670527-5670647 1.00e+00 120 chr2L:22249703-22249823 7.29e-01 120 chr4:313851-313971 9.21e-01 120 chr2R:4013998-4014118 2.38e-01 120 chr3L:23279203-23279323 8.19e-03 42_[+2(1.19e-05)]_70 chr2R:4829132-4829252 8.86e-02 120 chr4:68558-68678 5.50e-01 120 chr4:663198-663318 9.94e-01 120 chr4:959774-959894 1.00e+00 120 chr2R:5251299-5251419 9.70e-01 120 chr2R:5126602-5126722 4.17e-02 120 chr4:132048-132168 9.11e-02 120 chr4:1156372-1156492 9.47e-01 120 chr3L:23258632-23258752 6.42e-01 120 chr2R:999963-1000083 2.01e-01 120 chrX:21630315-21630435 4.16e-01 120 chr4:1051438-1051558 4.42e-01 120 chr2R:4243016-4243136 5.91e-01 120 chr2R:5651839-5651959 2.00e-02 26_[+1(6.09e-06)]_86 chr2R:4744203-4744323 9.99e-01 120 chr3R:4400087-4400207 1.00e+00 120 chr2R:5293901-5294021 9.76e-01 120 chr2R:1590425-1590545 9.01e-01 120 chr2R:5413538-5413658 1.65e-03 19_[+1(3.10e-06)]_93 chr4:458771-458891 4.48e-03 32_[+5(6.54e-05)]_80 chr2L:22169204-22169324 9.98e-01 120 chr3R:3734967-3735087 3.30e-01 120 chr2R:1345147-1345267 9.76e-01 120 chr4:314795-314915 5.97e-01 120 chr4:771275-771395 6.64e-01 120 chr3R:7080362-7080482 4.85e-01 120 chr2R:4827641-4827761 7.15e-01 120 chr4:205976-206096 8.99e-01 120 chr4:904878-904998 7.67e-01 120 chr3L:23338081-23338201 9.48e-01 120 chr3R:4400290-4400410 9.93e-01 120 chr3L:25115935-25116055 1.00e+00 120 chr2R:2495737-2495857 1.74e-05 14_[+4(9.51e-05)]_49_[+2(1.19e-05)]_\ 27_[+4(2.90e-06)]_6 chr4:787583-787703 2.32e-01 120 chr4:179416-179536 9.98e-01 120 chr4:663406-663526 8.15e-01 120 chr2R:2846708-2846828 8.47e-01 120 chr3L:23580687-23580807 8.57e-02 110_[+1(1.41e-05)]_2 chr2R:5304188-5304308 1.21e-02 120 chr2R:5701946-5702066 9.98e-01 120 chr2R:5697701-5697821 9.20e-01 120 chr3R:3846680-3846800 8.24e-01 120 chr2R:5663803-5663923 6.10e-02 120 chr3L:27859400-27859520 9.97e-01 120 chr2R:4261550-4261670 9.41e-06 24_[+2(1.19e-05)]_88 chr2R:5652816-5652936 9.02e-01 120 chr4:570833-570953 8.34e-01 120 chr4:1027803-1027923 1.42e-02 42_[+2(9.93e-05)]_70 chr2R:4012726-4012846 5.55e-01 120 chr4:43016-43136 8.31e-02 120 chr4:1123891-1124011 2.09e-02 45_[+1(6.09e-06)]_67 chr2L:22247818-22247938 9.59e-01 120 chr3R:3843087-3843207 5.10e-01 120 chr3R:3586587-3586707 7.65e-03 75_[+2(9.03e-05)]_37 chr4:1181844-1181964 1.00e+00 120 chr4:961132-961252 3.12e-02 120 chr4:1060921-1061041 9.95e-01 120 chrX:10320595-10320715 1.00e+00 120 chr3L:23123747-23123867 7.44e-04 47_[+4(9.51e-05)]_47_[+2(1.19e-05)]_\ 10 chr4:671023-671143 9.69e-01 120 chr4:660641-660761 9.56e-01 120 chr2R:4549681-4549801 3.39e-03 85_[+2(3.85e-05)]_27 chr2L:22924669-22924789 9.21e-01 120 chr2L:23173104-23173224 9.51e-01 120 chr2L:22980933-22981053 1.77e-01 120 chr4:182500-182620 9.95e-01 120 chr2R:5354599-5354719 9.93e-01 120 chr2L:10314401-10314521 9.80e-01 120 chr4:1230736-1230856 9.87e-01 120 chr2R:1345348-1345468 7.25e-01 120 chr4:307997-308117 7.39e-01 120 chr2L:10226893-10227013 9.48e-01 120 chr4:1196949-1197069 9.92e-01 120 chr3L:26015268-26015388 6.00e-01 120 chr2L:10221129-10221249 9.94e-01 120 chr4:468185-468305 8.40e-01 120 chr4:695245-695365 3.30e-02 120 chr3L:23124467-23124587 9.43e-02 87_[+4(9.51e-05)]_25 chr2R:5671717-5671837 3.34e-03 41_[+2(3.85e-05)]_14_[+3(9.23e-05)]_\ 49 chr4:888086-888206 1.90e-01 120 chr2R:4544865-4544985 4.02e-03 120 chr2R:1347115-1347235 4.33e-02 120 chr3L:27134372-27134492 5.61e-02 120 chr2L:22130004-22130124 1.89e-01 120 chr2L:23075666-23075786 3.56e-02 59_[+1(9.30e-06)]_53 chr4:444232-444352 9.57e-02 120 chr2L:22751483-22751603 1.08e-03 78_[+2(1.19e-05)]_34 chr3R:3748666-3748786 1.37e-01 120 chr3L:27267113-27267233 8.33e-01 120 chr2L:10366582-10366702 9.98e-01 120 chr2R:5695523-5695643 1.76e-01 120 chr2R:3500675-3500795 6.25e-01 120 chr4:290625-290745 3.56e-01 120 chr2L:22121704-22121824 7.32e-01 120 chr2R:5530073-5530193 1.07e-01 109_[+2(3.12e-05)]_3 chr3R:4174519-4174639 2.38e-03 33_[+2(9.03e-05)]_79 chr3L:23096923-23097043 9.87e-01 120 chr2L:10314613-10314733 1.00e+00 120 chr2L:22169404-22169524 7.71e-01 120 chr3L:27082938-27083058 1.26e-05 14_[+2(1.19e-05)]_32_[+3(2.80e-06)]_\ 58 chr4:867059-867179 9.10e-01 120 chr2R:4596894-4597014 2.87e-01 120 chr2R:5341207-5341327 2.26e-01 120 chr3L:25108883-25109003 1.00e+00 120 chr3L:23339222-23339342 6.68e-01 120 chr2L:23313607-23313727 5.80e-01 120 chr2L:22536930-22537050 1.00e+00 120 chr2R:24029204-24029324 4.71e-01 120 chr4:930732-930852 1.00e+00 120 chr2R:5609063-5609183 1.41e-01 120 chr2R:4243222-4243342 6.45e-01 120 chr3L:24536094-24536214 6.66e-01 120 chr3L:25119588-25119708 6.30e-01 120 chr4:359815-359935 9.22e-01 120 chr3L:20001005-20001125 6.40e-01 120 chr3L:25230166-25230286 9.01e-01 120 chr4:1061134-1061254 9.52e-01 120 chr2R:5416564-5416684 3.41e-01 120 chr4:43790-43910 5.75e-01 120 chr3L:20000331-20000451 9.38e-01 120 chr3R:7081981-7082101 9.79e-01 120 chr2R:5259073-5259193 7.60e-01 120 chr2R:4270841-4270961 4.61e-01 120 chr2R:5128317-5128437 7.47e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************