******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG11617.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:14381652-14381772 1.0000 120 chr3L:7833365-7833485 1.0000 120 chr3L:8628404-8628524 1.0000 120 chrX:21519326-21519446 1.0000 120 chr3R:8712798-8712918 1.0000 120 chr3R:10111824-10111944 1.0000 120 chrX:17588243-17588363 1.0000 120 chr3L:7833611-7833731 1.0000 120 chrX:13972562-13972682 1.0000 120 chr3R:7945019-7945139 1.0000 120 chrX:2685286-2685406 1.0000 120 chr2R:6770030-6770150 1.0000 120 chr3R:21195710-21195830 1.0000 120 chrX:5921109-5921229 1.0000 120 chrX:3447873-3447993 1.0000 120 chrX:6344589-6344709 1.0000 120 chrX:15313931-15314051 1.0000 120 chr3R:18275507-18275627 1.0000 120 chr2R:10052568-10052688 1.0000 120 chr3L:10110524-10110644 1.0000 120 chr3R:20305979-20306099 1.0000 120 chr2L:3507631-3507751 1.0000 120 chr3R:31250544-31250664 1.0000 120 chr2L:12700693-12700813 1.0000 120 chr3L:8358235-8358355 1.0000 120 chr3L:11689905-11690025 1.0000 120 chr2L:5303035-5303155 1.0000 120 chr4:922713-922833 1.0000 120 chr3L:9065012-9065132 1.0000 120 chr3R:9011815-9011935 1.0000 120 chr3R:14734925-14735045 1.0000 120 chrX:8973256-8973376 1.0000 120 chr3R:10112025-10112145 1.0000 120 chr3L:3940695-3940815 1.0000 120 chr3R:30308281-30308401 1.0000 120 chr3R:30308482-30308602 1.0000 120 chrX:3265948-3266068 1.0000 120 chr2L:18823688-18823808 1.0000 120 chr3R:16340784-16340904 1.0000 120 chr2R:7615683-7615803 1.0000 120 chr2R:6993970-6994090 1.0000 120 chr2R:14973140-14973260 1.0000 120 chrX:13936327-13936447 1.0000 120 chr3R:19132277-19132397 1.0000 120 chr3L:11272574-11272694 1.0000 120 chr2R:17099774-17099894 1.0000 120 chr2R:6693184-6693304 1.0000 120 chr3R:16356731-16356851 1.0000 120 chrX:7104544-7104664 1.0000 120 chrX:2107924-2108044 1.0000 120 chr2L:6941838-6941958 1.0000 120 chr2L:4915836-4915956 1.0000 120 chrX:15335984-15336104 1.0000 120 chrX:13779850-13779970 1.0000 120 chr2R:9184613-9184733 1.0000 120 chr3L:16234170-16234290 1.0000 120 chr2R:17676882-17677002 1.0000 120 chr2L:3779254-3779374 1.0000 120 chrX:6333433-6333553 1.0000 120 chrX:13376683-13376803 1.0000 120 chr3R:10092108-10092228 1.0000 120 chr2L:1135577-1135697 1.0000 120 chr2R:24195524-24195644 1.0000 120 chr3R:7217325-7217445 1.0000 120 chrX:13320816-13320936 1.0000 120 chr3L:19504836-19504956 1.0000 120 chr2R:10553583-10553703 1.0000 120 chr2L:435602-435722 1.0000 120 chr2R:15412636-15412756 1.0000 120 chr3L:9690929-9691049 1.0000 120 chr3L:16002190-16002310 1.0000 120 chr2R:7812710-7812830 1.0000 120 chr2L:1080944-1081064 1.0000 120 chr2L:8233771-8233891 1.0000 120 chr2L:5242575-5242695 1.0000 120 chr3R:10330592-10330712 1.0000 120 chr3R:19094867-19094987 1.0000 120 chr2R:17435645-17435765 1.0000 120 chr3R:21180502-21180622 1.0000 120 chr3L:11623562-11623682 1.0000 120 chr3L:2805322-2805442 1.0000 120 chr3L:14204511-14204631 1.0000 120 chr3R:7945220-7945340 1.0000 120 chrX:3444889-3445009 1.0000 120 chr3R:14680503-14680623 1.0000 120 chrX:21378201-21378321 1.0000 120 chrX:10736151-10736271 1.0000 120 chr2L:18153232-18153352 1.0000 120 chr3R:24148983-24149103 1.0000 120 chr2R:8127366-8127486 1.0000 120 chr2R:10553807-10553927 1.0000 120 chrX:15453233-15453353 1.0000 120 chr2L:1731062-1731182 1.0000 120 chr3L:14510159-14510279 1.0000 120 chrX:11373477-11373597 1.0000 120 chr3R:18438352-18438472 1.0000 120 chr2R:15984544-15984664 1.0000 120 chr2L:5209972-5210092 1.0000 120 chr2R:8131585-8131705 1.0000 120 chrX:18407121-18407241 1.0000 120 chr3L:8997420-8997540 1.0000 120 chr3R:23067520-23067640 1.0000 120 chr2L:3880235-3880355 1.0000 120 chrX:18094870-18094990 1.0000 120 chrX:9061499-9061619 1.0000 120 chr3R:21208524-21208644 1.0000 120 chr2L:18713841-18713961 1.0000 120 chr3R:23938801-23938921 1.0000 120 chrX:15314131-15314251 1.0000 120 chrX:10362972-10363092 1.0000 120 chr2L:18459790-18459910 1.0000 120 chr3R:31218643-31218763 1.0000 120 chrX:8112816-8112936 1.0000 120 chr2L:7886028-7886148 1.0000 120 chr3R:21134071-21134191 1.0000 120 chrX:13307348-13307468 1.0000 120 chr2R:7463336-7463456 1.0000 120 chr2L:8087239-8087359 1.0000 120 chr3L:1612270-1612390 1.0000 120 chr3R:18981108-18981228 1.0000 120 chr3L:12275748-12275868 1.0000 120 chr3R:28829718-28829838 1.0000 120 chr2R:13219121-13219241 1.0000 120 chr2L:5117172-5117292 1.0000 120 chrX:13296899-13297019 1.0000 120 chr3R:23139625-23139745 1.0000 120 chrX:10785034-10785154 1.0000 120 chr3L:4116686-4116806 1.0000 120 chrX:11441135-11441255 1.0000 120 chr3R:5302031-5302151 1.0000 120 chrX:12611766-12611886 1.0000 120 chr3R:10380110-10380230 1.0000 120 chr2R:20257802-20257922 1.0000 120 chrX:15312550-15312670 1.0000 120 chr3L:9072186-9072306 1.0000 120 chr2R:18141027-18141147 1.0000 120 chrX:11087618-11087738 1.0000 120 chr3L:17658965-17659085 1.0000 120 chr2R:10272884-10273004 1.0000 120 chr2R:9114054-9114174 1.0000 120 chr3R:20622175-20622295 1.0000 120 chrX:21519547-21519667 1.0000 120 chr2L:4965569-4965689 1.0000 120 chr2L:8214043-8214163 1.0000 120 chr3R:13819168-13819288 1.0000 120 chrX:13990585-13990705 1.0000 120 chr3R:10679268-10679388 1.0000 120 chr2R:14973343-14973463 1.0000 120 chrX:6255529-6255649 1.0000 120 chrX:9466249-9466369 1.0000 120 chr3L:9056491-9056611 1.0000 120 chr3R:23164282-23164402 1.0000 120 chr3L:8576183-8576303 1.0000 120 chr3R:27561244-27561364 1.0000 120 chrX:6344386-6344506 1.0000 120 chrX:2270357-2270477 1.0000 120 chr2L:12046607-12046727 1.0000 120 chr2L:13156478-13156598 1.0000 120 chr2L:18967049-18967169 1.0000 120 chrX:13735077-13735197 1.0000 120 chr3L:12799176-12799296 1.0000 120 chr2R:15846354-15846474 1.0000 120 chr3R:19859646-19859766 1.0000 120 chr2L:14405134-14405254 1.0000 120 chr2R:24295117-24295237 1.0000 120 chrX:18657586-18657706 1.0000 120 chr3L:15511770-15511890 1.0000 120 chrX:10325013-10325133 1.0000 120 chr3L:16602878-16602998 1.0000 120 chr2R:13957331-13957451 1.0000 120 chr3L:16613082-16613202 1.0000 120 chr3L:12798970-12799090 1.0000 120 chr3R:14557653-14557773 1.0000 120 chrX:2270112-2270232 1.0000 120 chr2R:13015418-13015538 1.0000 120 chrX:8231788-8231908 1.0000 120 chr2R:13507270-13507390 1.0000 120 chr2R:9603341-9603461 1.0000 120 chr2R:19178930-19179050 1.0000 120 chr2R:22420664-22420784 1.0000 120 chrX:15043965-15044085 1.0000 120 chr3R:30099626-30099746 1.0000 120 chr3R:17394916-17395036 1.0000 120 chr4:557697-557817 1.0000 120 chrX:15746264-15746384 1.0000 120 chr3R:11173251-11173371 1.0000 120 chr3L:3159738-3159858 1.0000 120 chrX:2742238-2742358 1.0000 120 chrX:19878844-19878964 1.0000 120 chr2R:13960940-13961060 1.0000 120 chrX:17860886-17861006 1.0000 120 chrX:13376883-13377003 1.0000 120 chr3R:27604657-27604777 1.0000 120 chrX:17113397-17113517 1.0000 120 chr3L:19815606-19815726 1.0000 120 chr3R:21931484-21931604 1.0000 120 chr3R:17394716-17394836 1.0000 120 chrX:11820526-11820646 1.0000 120 chrX:3720267-3720387 1.0000 120 chr2L:8071422-8071542 1.0000 120 chrX:2591710-2591830 1.0000 120 chr2L:203618-203738 1.0000 120 chr3R:15548197-15548317 1.0000 120 chr2L:10849677-10849797 1.0000 120 chrX:15312333-15312453 1.0000 120 chrX:13254623-13254743 1.0000 120 chr3L:9065217-9065337 1.0000 120 chr3R:15139694-15139814 1.0000 120 chr3R:7793897-7794017 1.0000 120 chr2R:16720012-16720132 1.0000 120 chr3R:27925239-27925359 1.0000 120 chr3R:11758851-11758971 1.0000 120 chr3R:10863134-10863254 1.0000 120 chr3L:12270062-12270182 1.0000 120 chr2L:9785979-9786099 1.0000 120 chr3R:26261038-26261158 1.0000 120 chr2R:18846521-18846641 1.0000 120 chr3R:15139493-15139613 1.0000 120 chr3R:21176763-21176883 1.0000 120 chr3L:16714278-16714398 1.0000 120 chr3L:2805528-2805648 1.0000 120 chrX:9156435-9156555 1.0000 120 chr2L:8362930-8363050 1.0000 120 chr2L:155249-155369 1.0000 120 chrX:16559899-16560019 1.0000 120 chr3R:24651262-24651382 1.0000 120 chr3R:21193766-21193886 1.0000 120 chr3R:27919485-27919605 1.0000 120 chrX:14805877-14805997 1.0000 120 chr3L:14003837-14003957 1.0000 120 chr2R:16197138-16197258 1.0000 120 chr2L:5278586-5278706 1.0000 120 chr2L:13839034-13839154 1.0000 120 chr2R:14161312-14161432 1.0000 120 chrX:10363172-10363292 1.0000 120 chr3L:9698411-9698531 1.0000 120 chr2R:13009174-13009294 1.0000 120 chr2L:2166019-2166139 1.0000 120 chrX:635902-636022 1.0000 120 chrX:22449402-22449522 1.0000 120 chr2L:13203361-13203481 1.0000 120 chr2R:12035188-12035308 1.0000 120 chr2R:14604302-14604422 1.0000 120 chrX:12723415-12723535 1.0000 120 chr2L:8088224-8088344 1.0000 120 chr3R:15320472-15320592 1.0000 120 chr2L:2857952-2858072 1.0000 120 chr3L:17049917-17050037 1.0000 120 chr3R:22034220-22034340 1.0000 120 chrX:22479471-22479591 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG11617/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG11617.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.32 C 0.181 G 0.177 T 0.321 Background letter frequencies (from file dataset with add-one prior applied): A 0.32 C 0.181 G 0.177 T 0.321 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF BSSGCNGC MEME-1 width = 8 sites = 53 llr = 438 E-value = 1.1e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif BSSGCNGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::2::4:: pos.-specific C 2633a2:a probability G 3457:2a: matrix T 5::::2:: bits 2.5 * ** 2.2 * ** 2.0 * ** 1.7 * ** Relative 1.5 * ** ** Entropy 1.2 * ** ** (11.9 bits) 1.0 * ** ** 0.7 **** ** 0.5 ***** ** 0.2 ***** ** 0.0 -------- Multilevel TCGGCAGC consensus GGCC G sequence C A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSSGCNGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16714278-16714398 1 1.03e-06 . GCGGCGGC AGCGGCGCGG chr3R:5302031-5302151 17 1.03e-06 CAAATAAACA GCGGCGGC AGCAAATACT chr3R:15320472-15320592 58 2.90e-06 TTCAACCACT TCGGCGGC ACCATCCCCA chrX:21519547-21519667 56 2.90e-06 TGTAGATTCA TCGGCGGC GCACCGATCA chr2R:19178930-19179050 99 1.22e-05 GTTTTTTTAC TCGGCAGC ACAGCAACTA chr3R:27561244-27561364 91 1.22e-05 CTTTTGTGGC TCGGCAGC AAAGCTCTGC chr2R:10052568-10052688 91 1.22e-05 AACCCACAAG TCGGCCGC GTTCCTCGAT chrX:2742238-2742358 11 1.61e-05 TCGCGCTACG CCGGCAGC GATTGAGTAA chr3R:14680503-14680623 59 1.80e-05 TGCGGAGAAA TGGGCGGC AATTAAAGCT chrX:21378201-21378321 103 2.29e-05 TGGCTCTGCT GGGGCAGC tttttttgtt chr2R:13957331-13957451 87 3.29e-05 CGCAGTTTGT GCGGCTGC TGTTGTTGTT chr3R:23164282-23164402 82 3.29e-05 CAGGAGTCAT GCGCCGGC CAagatccag chr2L:8088224-8088344 34 4.52e-05 CGACGTCGCT GCCGCAGC GAAGGCGGCT chrX:22449402-22449522 32 4.52e-05 TCATTCAGAG CGGGCAGC ATAGTGGGGG chr3R:30099626-30099746 39 4.52e-05 AAACTCTGCC GCCGCCGC CGTTGCTATC chrX:3265948-3266068 20 4.52e-05 CTCATTTTCT TCGGCTGC TCTCCAAATA chr2L:6941838-6941958 37 5.66e-05 CAGGCGATTT TCCGCCGC TTGCGCATGT chr3R:16340784-16340904 64 5.66e-05 GGCTTccacc tccgccgc tgccgccacc chr3R:9011815-9011935 39 5.66e-05 TGCCGCCCGC TCCGCCGC TGATCACCTC chr2R:15984544-15984664 9 6.60e-05 ACCAATTT TCGCCAGC ACGCCCAAGT chr2R:13507270-13507390 75 7.38e-05 ACGTCAACAA GGGGCTGC CACCCCTTTC chr3L:16602878-16602998 108 7.38e-05 GAAATGATAA CCGCCAGC CAATT chr3R:10863134-10863254 69 8.30e-05 CAACAACTGC GGCGCAGC ATCTGTTTTG chr3R:14557653-14557773 54 8.30e-05 AACGGGGGGG TGGGCTGC GATTCAGACT chr2R:14973343-14973463 19 8.30e-05 GCATTAATTG TGGCCGGC AACACCCTTT chr3R:13819168-13819288 69 8.30e-05 CTGGTGGGGT GGCGCAGC ACCTGTGCAA chr2R:15412636-15412756 77 8.30e-05 TTCCTCTAGT TGGCCGGC TTTTCCTGGG chr2L:2857952-2858072 108 9.89e-05 TGCCCCACTG TGCGCCGC CCACT chr2R:16197138-16197258 64 9.89e-05 GCAGTTCCCG TGCGCCGC GAACAAAGAG chrX:13254623-13254743 35 9.89e-05 AAATTAAGAT GGGCCAGC GATAAGCGAG chr3R:15548197-15548317 109 9.89e-05 ACGATTTAGC CGGCCGGC GAAA chrX:15313931-15314051 12 9.89e-05 CTCATGAACT CGGCCGGC GGAAAGCGGA chrX:9156435-9156555 70 1.18e-04 ACGCACATAT TCAGCGGC CACAAGCACG chrX:15312550-15312670 106 1.18e-04 GATTCCCCAT TCAGCGGC GAATGCA chr2L:12700693-12700813 9 1.18e-04 TACAGTGG TGGCCAGC AGTATTCACC chr3R:20622175-20622295 71 1.38e-04 ATAAGCAGAA CGGCCCGC CGTGTGTGCC chr3L:8997420-8997540 21 1.38e-04 ACCacacaga gcagcagc gcacagtaca chr3R:14734925-14735045 86 1.38e-04 CCGACAATTG GCAGCAGC GTCAGCAGCA chr2R:13009174-13009294 52 1.55e-04 CGCCACTTAA TCAGCAGC AAAATGTCGC chr3L:16613082-16613202 8 1.55e-04 AATCATC TCCCCAGC CCTTGATCGA chr2L:1080944-1081064 47 1.68e-04 TCAAACTAAA CCAGCCGC AGACTGATCA chr2R:7812710-7812830 73 1.68e-04 ATACCACACT CCCCCCGC ACACACCCTA chr3L:9690929-9691049 85 1.68e-04 AACAGTTCAG CCAGCAGC TGTTTCTTTG chrX:11087618-11087738 23 1.78e-04 GATGAAAAAT TGAGCGGC GAGTGAAAGG chr3R:10092108-10092228 20 1.78e-04 GCAACCGAAA TGCGCTGC GAATTGAATT chr2R:14973140-14973260 108 1.95e-04 CTGTGAACGT TGGCCTGC AATCA chr2R:10553807-10553927 69 2.19e-04 GTTAGTAGTT GCAGCTGC AAGGTGCTAT chrX:8973256-8973376 61 2.40e-04 AGGATTACCT CGCCCAGC TTGGCCTTCG chrX:2270112-2270232 98 2.53e-04 TCCACTGTTC CCAGCTGC ATAACTGTTT chr3L:14204511-14204631 92 2.53e-04 CCGTTTTTTT CCCCCTGC ATGTATTTGA chrX:13376683-13376803 104 2.63e-04 TCATTTTTTT TCACCAGC ACTGTTCGA chrX:16559899-16560019 41 2.75e-04 TTTTCGCTTC GGCCCTGC AGACGTCGTA chrX:13990585-13990705 99 3.01e-04 CATACAAATC CGAGCTGC ATTGGTCAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSSGCNGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16714278-16714398 1e-06 [+1]_112 chr3R:5302031-5302151 1e-06 16_[+1]_96 chr3R:15320472-15320592 2.9e-06 57_[+1]_55 chrX:21519547-21519667 2.9e-06 55_[+1]_57 chr2R:19178930-19179050 1.2e-05 98_[+1]_14 chr3R:27561244-27561364 1.2e-05 90_[+1]_22 chr2R:10052568-10052688 1.2e-05 90_[+1]_22 chrX:2742238-2742358 1.6e-05 10_[+1]_102 chr3R:14680503-14680623 1.8e-05 58_[+1]_54 chrX:21378201-21378321 2.3e-05 102_[+1]_10 chr2R:13957331-13957451 3.3e-05 86_[+1]_26 chr3R:23164282-23164402 3.3e-05 81_[+1]_31 chr2L:8088224-8088344 4.5e-05 33_[+1]_79 chrX:22449402-22449522 4.5e-05 31_[+1]_81 chr3R:30099626-30099746 4.5e-05 38_[+1]_74 chrX:3265948-3266068 4.5e-05 19_[+1]_93 chr2L:6941838-6941958 5.7e-05 36_[+1]_76 chr3R:16340784-16340904 5.7e-05 63_[+1]_49 chr3R:9011815-9011935 5.7e-05 38_[+1]_74 chr2R:15984544-15984664 6.6e-05 8_[+1]_104 chr2R:13507270-13507390 7.4e-05 74_[+1]_38 chr3L:16602878-16602998 7.4e-05 107_[+1]_5 chr3R:10863134-10863254 8.3e-05 68_[+1]_44 chr3R:14557653-14557773 8.3e-05 53_[+1]_59 chr2R:14973343-14973463 8.3e-05 18_[+1]_94 chr3R:13819168-13819288 8.3e-05 68_[+1]_44 chr2R:15412636-15412756 8.3e-05 76_[+1]_36 chr2L:2857952-2858072 9.9e-05 107_[+1]_5 chr2R:16197138-16197258 9.9e-05 63_[+1]_49 chrX:13254623-13254743 9.9e-05 34_[+1]_78 chr3R:15548197-15548317 9.9e-05 108_[+1]_4 chrX:15313931-15314051 9.9e-05 11_[+1]_101 chrX:9156435-9156555 0.00012 69_[+1]_43 chrX:15312550-15312670 0.00012 105_[+1]_7 chr2L:12700693-12700813 0.00012 8_[+1]_104 chr3R:20622175-20622295 0.00014 70_[+1]_42 chr3L:8997420-8997540 0.00014 20_[+1]_92 chr3R:14734925-14735045 0.00014 85_[+1]_27 chr2R:13009174-13009294 0.00015 51_[+1]_61 chr3L:16613082-16613202 0.00015 7_[+1]_105 chr2L:1080944-1081064 0.00017 46_[+1]_66 chr2R:7812710-7812830 0.00017 72_[+1]_40 chr3L:9690929-9691049 0.00017 84_[+1]_28 chrX:11087618-11087738 0.00018 22_[+1]_90 chr3R:10092108-10092228 0.00018 19_[+1]_93 chr2R:14973140-14973260 0.00019 107_[+1]_5 chr2R:10553807-10553927 0.00022 68_[+1]_44 chrX:8973256-8973376 0.00024 60_[+1]_52 chrX:2270112-2270232 0.00025 97_[+1]_15 chr3L:14204511-14204631 0.00025 91_[+1]_21 chrX:13376683-13376803 0.00026 103_[+1]_9 chrX:16559899-16560019 0.00028 40_[+1]_72 chrX:13990585-13990705 0.0003 98_[+1]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSSGCNGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BSSGCNGC width=8 seqs=53 chr3L:16714278-16714398 ( 1) GCGGCGGC 1 chr3R:5302031-5302151 ( 17) GCGGCGGC 1 chr3R:15320472-15320592 ( 58) TCGGCGGC 1 chrX:21519547-21519667 ( 56) TCGGCGGC 1 chr2R:19178930-19179050 ( 99) TCGGCAGC 1 chr3R:27561244-27561364 ( 91) TCGGCAGC 1 chr2R:10052568-10052688 ( 91) TCGGCCGC 1 chrX:2742238-2742358 ( 11) CCGGCAGC 1 chr3R:14680503-14680623 ( 59) TGGGCGGC 1 chrX:21378201-21378321 ( 103) GGGGCAGC 1 chr2R:13957331-13957451 ( 87) GCGGCTGC 1 chr3R:23164282-23164402 ( 82) GCGCCGGC 1 chr2L:8088224-8088344 ( 34) GCCGCAGC 1 chrX:22449402-22449522 ( 32) CGGGCAGC 1 chr3R:30099626-30099746 ( 39) GCCGCCGC 1 chrX:3265948-3266068 ( 20) TCGGCTGC 1 chr2L:6941838-6941958 ( 37) TCCGCCGC 1 chr3R:16340784-16340904 ( 64) TCCGCCGC 1 chr3R:9011815-9011935 ( 39) TCCGCCGC 1 chr2R:15984544-15984664 ( 9) TCGCCAGC 1 chr2R:13507270-13507390 ( 75) GGGGCTGC 1 chr3L:16602878-16602998 ( 108) CCGCCAGC 1 chr3R:10863134-10863254 ( 69) GGCGCAGC 1 chr3R:14557653-14557773 ( 54) TGGGCTGC 1 chr2R:14973343-14973463 ( 19) TGGCCGGC 1 chr3R:13819168-13819288 ( 69) GGCGCAGC 1 chr2R:15412636-15412756 ( 77) TGGCCGGC 1 chr2L:2857952-2858072 ( 108) TGCGCCGC 1 chr2R:16197138-16197258 ( 64) TGCGCCGC 1 chrX:13254623-13254743 ( 35) GGGCCAGC 1 chr3R:15548197-15548317 ( 109) CGGCCGGC 1 chrX:15313931-15314051 ( 12) CGGCCGGC 1 chrX:9156435-9156555 ( 70) TCAGCGGC 1 chrX:15312550-15312670 ( 106) TCAGCGGC 1 chr2L:12700693-12700813 ( 9) TGGCCAGC 1 chr3R:20622175-20622295 ( 71) CGGCCCGC 1 chr3L:8997420-8997540 ( 21) GCAGCAGC 1 chr3R:14734925-14735045 ( 86) GCAGCAGC 1 chr2R:13009174-13009294 ( 52) TCAGCAGC 1 chr3L:16613082-16613202 ( 8) TCCCCAGC 1 chr2L:1080944-1081064 ( 47) CCAGCCGC 1 chr2R:7812710-7812830 ( 73) CCCCCCGC 1 chr3L:9690929-9691049 ( 85) CCAGCAGC 1 chrX:11087618-11087738 ( 23) TGAGCGGC 1 chr3R:10092108-10092228 ( 20) TGCGCTGC 1 chr2R:14973140-14973260 ( 108) TGGCCTGC 1 chr2R:10553807-10553927 ( 69) GCAGCTGC 1 chrX:8973256-8973376 ( 61) CGCCCAGC 1 chrX:2270112-2270232 ( 98) CCAGCTGC 1 chr3L:14204511-14204631 ( 92) CCCCCTGC 1 chrX:13376683-13376803 ( 104) TCACCAGC 1 chrX:16559899-16560019 ( 41) GGCCCTGC 1 chrX:13990585-13990705 ( 99) CGAGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSSGCNGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1765 E= 1.1e-008 -1237 44 68 55 -1237 169 123 -1237 -50 64 147 -1237 -1237 82 194 -1237 -1237 247 -1237 -1237 16 6 47 -63 -1237 -1237 250 -1237 -1237 247 -1237 -1237 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSSGCNGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 1.1e-008 0.000000 0.245283 0.283019 0.471698 0.000000 0.584906 0.415094 0.000000 0.226415 0.283019 0.490566 0.000000 0.000000 0.320755 0.679245 0.000000 0.000000 1.000000 0.000000 0.000000 0.358491 0.188679 0.245283 0.207547 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BSSGCNGC MEME-1 regular expression -------------------------------------------------------------------------------- [TGC][CG][GCA][GC]C[AGT]GC -------------------------------------------------------------------------------- Time 8.67 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCMCMC MEME-2 width = 8 sites = 35 llr = 295 E-value = 1.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCMCMC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2:116151 pos.-specific C 1a394959 probability G 7:6::::: matrix T :::::::: bits 2.5 * 2.2 * 2.0 * * 1.7 * * * * Relative 1.5 * * * * Entropy 1.2 * * * * (12.2 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCACAC consensus A C C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCMCMC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13009174-13009294 78 3.05e-06 GCACTTTACT GCGCACCC CCAGGAAAAG chrX:21519326-21519446 84 3.05e-06 AATTATCTTG GCGCACCC TAAAAATAAA chr3L:12798970-12799090 50 8.44e-06 CTACAAGGAA GCGCACAC ATCAGATAGT chr3R:31218643-31218763 97 8.44e-06 ATTCCACTGG GCGCACAC ATAACCTCAA chr2L:2166019-2166139 8 9.57e-06 CCGCAAT GCCCCCCC TTTACCAACA chr3L:9072186-9072306 51 1.35e-05 CTAGGTGCTT GCCCCCAC ACATTGAAAG chrX:2591710-2591830 12 1.71e-05 CCCCTGAGAA GCCCACAC GAAACATTCA chr2R:16197138-16197258 45 1.82e-05 CGCCTTGCCC CCGCCCCC CGCAGTTCCC chr3L:8628404-8628524 59 1.82e-05 GAGAACTAGC CCGCCCCC AAAACTCGGC chr3L:16613082-16613202 89 2.22e-05 GGGGAGCTGC ACGCCCCC TGAGAAAACC chrX:15314131-15314251 99 2.22e-05 CCGTTTCCAA ACGCCCCC TCCCCGAAAC chr3L:9056491-9056611 9 3.67e-05 CTTAAACT GCACCCCC GCAAACATCG chr3L:14003837-14003957 49 4.76e-05 TTTCGATTTG GCACACCC CTCCGCATTT chr3L:19815606-19815726 5 4.76e-05 CCAC ACGCACAC CTGGCCAACT chrX:13990585-13990705 82 4.76e-05 ACACACTCAC ACGCACAC ATACAAATCC chr2L:18459790-18459910 105 4.76e-05 ACGGAGAGAA ACGCACAC CAATAAGT chr3L:8997420-8997540 71 5.17e-05 CAAAATCACG CCCCACCC ACCTAGCCAC chr3R:17394716-17394836 66 5.56e-05 GATTTTAAAT GCGCCCCA TTAACTGGTT chr2L:8214043-8214163 45 6.38e-05 TGTTCTGTAA ACCCACCC CTCGTTATTT chr2R:12035188-12035308 43 7.27e-05 TCTATAAAAA GCGCAACC TTGCTATTTA chr2R:16720012-16720132 51 7.27e-05 TTAGCTACCA CCCCCCAC CTCCCTTGCC chr3R:14734925-14735045 26 7.27e-05 TTAGCGATTC CCCCCCAC AAAAGAACAA chr3R:24651262-24651382 45 8.28e-05 TTTCAGATTT GCACACAC ACagagaaag chrX:9156435-9156555 54 8.28e-05 GGAAAACAGT GCACACAC GCACATATTC chr3R:9011815-9011935 98 8.28e-05 ACTATGGGAT GCGCACGC CTTGGCAGCC chr2R:9114054-9114174 38 9.00e-05 TATGTTGTTC ACCCCCAC CTAAGTATTA chr3L:9065217-9065337 97 1.00e-04 GCACCGGATG GCGCCCAA TGGTCGAAAG chr3R:23139625-23139745 108 1.00e-04 ATTATGCCAA GCGAACCC AATTT chrX:22479471-22479591 33 1.19e-04 TTTAACAAGT GCGCAAAC AAGTTATAAT chr3R:10863134-10863254 86 1.19e-04 CATCTGTTTT GCGCAAAC AAGGGAAGGC chr2R:13507270-13507390 50 1.19e-04 GGAAAAAAAC GCGCACAA AATAATAACG chrX:18657586-18657706 9 1.19e-04 AGATAAAA GCGCAAAC TAGTCTTGTA chr3L:2805322-2805442 92 1.26e-04 GGGCTTTCGA GCCCCCCA AATCCCCCCT chr2L:5117172-5117292 94 1.41e-04 CGATAATATC GCGAACAC AAACATGATG chr3R:11758851-11758971 111 1.44e-04 CTGAAGAGAT GCCACCCC AA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCMCMC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13009174-13009294 3e-06 77_[+2]_35 chrX:21519326-21519446 3e-06 83_[+2]_29 chr3L:12798970-12799090 8.4e-06 49_[+2]_63 chr3R:31218643-31218763 8.4e-06 96_[+2]_16 chr2L:2166019-2166139 9.6e-06 7_[+2]_105 chr3L:9072186-9072306 1.4e-05 50_[+2]_62 chrX:2591710-2591830 1.7e-05 11_[+2]_101 chr2R:16197138-16197258 1.8e-05 44_[+2]_68 chr3L:8628404-8628524 1.8e-05 58_[+2]_54 chr3L:16613082-16613202 2.2e-05 88_[+2]_24 chrX:15314131-15314251 2.2e-05 98_[+2]_14 chr3L:9056491-9056611 3.7e-05 8_[+2]_104 chr3L:14003837-14003957 4.8e-05 48_[+2]_64 chr3L:19815606-19815726 4.8e-05 4_[+2]_108 chrX:13990585-13990705 4.8e-05 81_[+2]_31 chr2L:18459790-18459910 4.8e-05 104_[+2]_8 chr3L:8997420-8997540 5.2e-05 70_[+2]_42 chr3R:17394716-17394836 5.6e-05 65_[+2]_47 chr2L:8214043-8214163 6.4e-05 44_[+2]_68 chr2R:12035188-12035308 7.3e-05 42_[+2]_70 chr2R:16720012-16720132 7.3e-05 50_[+2]_62 chr3R:14734925-14735045 7.3e-05 25_[+2]_87 chr3R:24651262-24651382 8.3e-05 44_[+2]_68 chrX:9156435-9156555 8.3e-05 53_[+2]_59 chr3R:9011815-9011935 8.3e-05 97_[+2]_15 chr2R:9114054-9114174 9e-05 37_[+2]_75 chr3L:9065217-9065337 0.0001 96_[+2]_16 chr3R:23139625-23139745 0.0001 107_[+2]_5 chrX:22479471-22479591 0.00012 32_[+2]_80 chr3R:10863134-10863254 0.00012 85_[+2]_27 chr2R:13507270-13507390 0.00012 49_[+2]_63 chrX:18657586-18657706 0.00012 8_[+2]_104 chr3L:2805322-2805442 0.00013 91_[+2]_21 chr2L:5117172-5117292 0.00014 93_[+2]_19 chr3R:11758851-11758971 0.00014 110_[+2]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCMCMC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCMCMC width=8 seqs=35 chr2R:13009174-13009294 ( 78) GCGCACCC 1 chrX:21519326-21519446 ( 84) GCGCACCC 1 chr3L:12798970-12799090 ( 50) GCGCACAC 1 chr3R:31218643-31218763 ( 97) GCGCACAC 1 chr2L:2166019-2166139 ( 8) GCCCCCCC 1 chr3L:9072186-9072306 ( 51) GCCCCCAC 1 chrX:2591710-2591830 ( 12) GCCCACAC 1 chr2R:16197138-16197258 ( 45) CCGCCCCC 1 chr3L:8628404-8628524 ( 59) CCGCCCCC 1 chr3L:16613082-16613202 ( 89) ACGCCCCC 1 chrX:15314131-15314251 ( 99) ACGCCCCC 1 chr3L:9056491-9056611 ( 9) GCACCCCC 1 chr3L:14003837-14003957 ( 49) GCACACCC 1 chr3L:19815606-19815726 ( 5) ACGCACAC 1 chrX:13990585-13990705 ( 82) ACGCACAC 1 chr2L:18459790-18459910 ( 105) ACGCACAC 1 chr3L:8997420-8997540 ( 71) CCCCACCC 1 chr3R:17394716-17394836 ( 66) GCGCCCCA 1 chr2L:8214043-8214163 ( 45) ACCCACCC 1 chr2R:12035188-12035308 ( 43) GCGCAACC 1 chr2R:16720012-16720132 ( 51) CCCCCCAC 1 chr3R:14734925-14735045 ( 26) CCCCCCAC 1 chr3R:24651262-24651382 ( 45) GCACACAC 1 chrX:9156435-9156555 ( 54) GCACACAC 1 chr3R:9011815-9011935 ( 98) GCGCACGC 1 chr2R:9114054-9114174 ( 38) ACCCCCAC 1 chr3L:9065217-9065337 ( 97) GCGCCCAA 1 chr3R:23139625-23139745 ( 108) GCGAACCC 1 chrX:22479471-22479591 ( 33) GCGCAAAC 1 chr3R:10863134-10863254 ( 86) GCGCAAAC 1 chr2R:13507270-13507390 ( 50) GCGCACAA 1 chrX:18657586-18657706 ( 9) GCGCAAAC 1 chr3L:2805322-2805442 ( 92) GCCCCCCA 1 chr2L:5117172-5117292 ( 94) GCGAACAC 1 chr3R:11758851-11758971 ( 111) GCCACCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCMCMC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0411 E= 1.9e+003 -68 -34 189 -1177 -1177 246 -1177 -1177 -149 66 176 -1177 -190 234 -1177 -1177 90 114 -1177 -1177 -149 229 -1177 -1177 68 134 -263 -1177 -149 229 -1177 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCMCMC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 1.9e+003 0.200000 0.142857 0.657143 0.000000 0.000000 1.000000 0.000000 0.000000 0.114286 0.285714 0.600000 0.000000 0.085714 0.914286 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.114286 0.885714 0.000000 0.000000 0.514286 0.457143 0.028571 0.000000 0.114286 0.885714 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCMCMC MEME-2 regular expression -------------------------------------------------------------------------------- [GA]C[GC]C[AC]C[AC]C -------------------------------------------------------------------------------- Time 14.86 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGAGGG MEME-3 width = 8 sites = 2 llr = 27 E-value = 6.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C :::::::: probability G aaaa:aaa matrix T :::::::: bits 2.5 **** *** 2.2 **** *** 2.0 **** *** 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (19.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGAGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:13009174-13009294 110 1.74e-06 GGGTGAGCCA GGGGAGGG GGG chr3L:14510159-14510279 71 1.74e-06 TTTTTGTGTG GGGGAGGG ATAGGAGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13009174-13009294 1.7e-06 109_[+3]_3 chr3L:14510159-14510279 1.7e-06 70_[+3]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGAGGG width=8 seqs=2 chr2R:13009174-13009294 ( 110) GGGGAGGG 1 chr3L:14510159-14510279 ( 71) GGGGAGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 6.0e+003 -765 -765 249 -765 -765 -765 249 -765 -765 -765 249 -765 -765 -765 249 -765 164 -765 -765 -765 -765 -765 249 -765 -765 -765 249 -765 -765 -765 249 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.0e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGAGGG MEME-3 regular expression -------------------------------------------------------------------------------- GGGGAGGG -------------------------------------------------------------------------------- Time 20.97 secs. ******************************************************************************** ******************************************************************************** MOTIF CRGGGGKG MEME-4 width = 8 sites = 5 llr = 59 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRGGGGKG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :4:::::: pos.-specific C a::::::: probability G :6aaaa4a matrix T ::::::6: bits 2.5 * **** * 2.2 * **** * 2.0 * **** * 1.7 * **** * Relative 1.5 * **** * Entropy 1.2 ****** * (17.1 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGGGGGTG consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGGGGKG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14557653-14557773 46 9.85e-07 CGTTGATAAA CGGGGGGG TGGGCTGCGA chr2R:9603341-9603461 8 2.77e-06 TATTTAT CGGGGGTG TAAAAAATCG chrX:21378201-21378321 81 2.77e-06 GCTAGGTGAC CGGGGGTG GTGTTGGCTC chr3L:16613082-16613202 75 4.55e-06 GCACATGACT CAGGGGGG AGCTGCACGC chr2R:14604302-14604422 14 7.78e-06 CACGCTTCAA CAGGGGTG GCGATAGGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGGGGKG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14557653-14557773 9.9e-07 45_[+4]_67 chr2R:9603341-9603461 2.8e-06 7_[+4]_105 chrX:21378201-21378321 2.8e-06 80_[+4]_32 chr3L:16613082-16613202 4.6e-06 74_[+4]_38 chr2R:14604302-14604422 7.8e-06 13_[+4]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGGGGKG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRGGGGKG width=8 seqs=5 chr3R:14557653-14557773 ( 46) CGGGGGGG 1 chr2R:9603341-9603461 ( 8) CGGGGGTG 1 chrX:21378201-21378321 ( 81) CGGGGGTG 1 chr3L:16613082-16613202 ( 75) CAGGGGGG 1 chr2R:14604302-14604422 ( 14) CAGGGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGGGGKG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.4073 E= 1.2e+004 -897 246 -897 -897 32 -897 176 -897 -897 -897 249 -897 -897 -897 249 -897 -897 -897 249 -897 -897 -897 249 -897 -897 -897 117 90 -897 -897 249 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGGGGKG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.2e+004 0.000000 1.000000 0.000000 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRGGGGKG MEME-4 regular expression -------------------------------------------------------------------------------- C[GA]GGGG[TG]G -------------------------------------------------------------------------------- Time 27.13 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGGGGC MEME-5 width = 8 sites = 4 llr = 46 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGGGGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :333:3:a probability G a888a8a: matrix T :::::::: bits 2.5 * * ** 2.2 * * ** 2.0 * * ** 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (16.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGGGC consensus CCC C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:2857952-2858072 48 5.01e-06 AACTAAATAG GGGCGGGC AATTGCTTAC chrX:22449402-22449522 45 5.01e-06 GCAGCATAGT GGGGGCGC TATGAAATAT chr3R:24651262-24651382 101 5.01e-06 TCAGATTGTg ggcggggc gaagtggggt chr3L:14204511-14204631 12 5.01e-06 AAGCCACTTT GCGGGGGC CCAACATTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:2857952-2858072 5e-06 47_[+5]_65 chrX:22449402-22449522 5e-06 44_[+5]_68 chr3R:24651262-24651382 5e-06 100_[+5]_12 chr3L:14204511-14204631 5e-06 11_[+5]_101 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGGGGC width=8 seqs=4 chr2L:2857952-2858072 ( 48) GGGCGGGC 1 chrX:22449402-22449522 ( 45) GGGGGCGC 1 chr3R:24651262-24651382 ( 101) GGCGGGGC 1 chr3L:14204511-14204631 ( 12) GCGGGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.5228 E= 1.0e+004 -865 -865 249 -865 -865 46 208 -865 -865 46 208 -865 -865 46 208 -865 -865 -865 249 -865 -865 46 208 -865 -865 -865 249 -865 -865 246 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGGGC MEME-5 regular expression -------------------------------------------------------------------------------- G[GC][GC][GC]G[GC]GC -------------------------------------------------------------------------------- Time 33.28 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:14381652-14381772 9.89e-01 120 chr3L:7833365-7833485 1.00e+00 120 chr3L:8628404-8628524 3.37e-03 58_[+2(1.82e-05)]_54 chrX:21519326-21519446 2.30e-02 83_[+2(3.05e-06)]_29 chr3R:8712798-8712918 1.00e+00 120 chr3R:10111824-10111944 7.19e-01 120 chrX:17588243-17588363 9.55e-01 120 chr3L:7833611-7833731 3.27e-01 120 chrX:13972562-13972682 9.93e-01 120 chr3R:7945019-7945139 6.83e-01 120 chrX:2685286-2685406 4.03e-01 120 chr2R:6770030-6770150 9.94e-01 120 chr3R:21195710-21195830 7.24e-01 120 chrX:5921109-5921229 3.38e-01 120 chrX:3447873-3447993 9.84e-01 120 chrX:6344589-6344709 1.00e+00 120 chrX:15313931-15314051 4.17e-03 11_[+1(9.89e-05)]_101 chr3R:18275507-18275627 6.94e-01 120 chr2R:10052568-10052688 1.81e-04 90_[+1(1.22e-05)]_22 chr3L:10110524-10110644 7.96e-01 120 chr3R:20305979-20306099 1.00e+00 120 chr2L:3507631-3507751 9.99e-01 120 chr3R:31250544-31250664 9.79e-01 120 chr2L:12700693-12700813 1.26e-03 120 chr3L:8358235-8358355 1.00e+00 120 chr3L:11689905-11690025 1.84e-01 120 chr2L:5303035-5303155 9.94e-01 120 chr4:922713-922833 1.00e+00 120 chr3L:9065012-9065132 6.65e-01 120 chr3R:9011815-9011935 5.06e-04 30_[+1(7.38e-05)]_[+1(5.66e-05)]_51_\ [+2(8.28e-05)]_15 chr3R:14734925-14735045 5.65e-03 25_[+2(7.27e-05)]_87 chrX:8973256-8973376 7.99e-03 120 chr3R:10112025-10112145 9.81e-01 120 chr3L:3940695-3940815 9.86e-01 120 chr3R:30308281-30308401 3.35e-01 120 chr3R:30308482-30308602 9.98e-01 120 chrX:3265948-3266068 4.57e-02 19_[+1(4.52e-05)]_93 chr2L:18823688-18823808 3.28e-02 67_[+5(9.27e-05)]_45 chr3R:16340784-16340904 1.40e-02 63_[+1(5.66e-05)]_49 chr2R:7615683-7615803 1.00e+00 120 chr2R:6993970-6994090 8.75e-01 120 chr2R:14973140-14973260 6.09e-02 120 chrX:13936327-13936447 8.55e-01 120 chr3R:19132277-19132397 9.97e-01 120 chr3L:11272574-11272694 1.13e-01 120 chr2R:17099774-17099894 9.32e-01 120 chr2R:6693184-6693304 7.84e-01 120 chr3R:16356731-16356851 5.33e-01 120 chrX:7104544-7104664 9.68e-01 120 chrX:2107924-2108044 9.98e-01 120 chr2L:6941838-6941958 1.26e-02 36_[+1(5.66e-05)]_76 chr2L:4915836-4915956 9.39e-01 120 chrX:15335984-15336104 9.91e-01 120 chrX:13779850-13779970 1.00e+00 120 chr2R:9184613-9184733 1.00e+00 120 chr3L:16234170-16234290 6.13e-01 120 chr2R:17676882-17677002 2.76e-01 120 chr2L:3779254-3779374 9.86e-01 120 chrX:6333433-6333553 9.98e-01 120 chrX:13376683-13376803 3.91e-01 120 chr3R:10092108-10092228 1.99e-02 120 chr2L:1135577-1135697 9.04e-01 120 chr2R:24195524-24195644 2.14e-02 96_[+5(9.27e-05)]_16 chr3R:7217325-7217445 9.93e-01 120 chrX:13320816-13320936 1.00e+00 120 chr3L:19504836-19504956 6.65e-01 120 chr2R:10553583-10553703 9.94e-01 120 chr2L:435602-435722 8.35e-01 120 chr2R:15412636-15412756 2.49e-01 76_[+1(8.30e-05)]_36 chr3L:9690929-9691049 2.08e-02 120 chr3L:16002190-16002310 4.65e-01 120 chr2R:7812710-7812830 4.39e-03 76_[+2(3.67e-05)]_36 chr2L:1080944-1081064 1.12e-01 120 chr2L:8233771-8233891 9.91e-01 120 chr2L:5242575-5242695 5.71e-01 120 chr3R:10330592-10330712 9.91e-01 120 chr3R:19094867-19094987 1.65e-01 120 chr2R:17435645-17435765 8.92e-01 120 chr3R:21180502-21180622 7.65e-01 120 chr3L:11623562-11623682 9.98e-01 120 chr3L:2805322-2805442 6.65e-06 18_[+4(4.58e-05)]_94 chr3L:14204511-14204631 6.57e-05 11_[+5(5.01e-06)]_101 chr3R:7945220-7945340 8.63e-01 120 chrX:3444889-3445009 1.00e+00 120 chr3R:14680503-14680623 9.23e-03 58_[+1(1.80e-05)]_54 chrX:21378201-21378321 2.18e-06 80_[+4(2.77e-06)]_14_[+1(2.29e-05)]_\ 10 chrX:10736151-10736271 8.56e-01 120 chr2L:18153232-18153352 8.70e-01 120 chr3R:24148983-24149103 9.73e-01 120 chr2R:8127366-8127486 4.63e-01 120 chr2R:10553807-10553927 4.77e-01 120 chrX:15453233-15453353 7.96e-01 120 chr2L:1731062-1731182 6.99e-01 120 chr3L:14510159-14510279 1.79e-04 70_[+3(1.74e-06)]_42 chrX:11373477-11373597 1.00e+00 120 chr3R:18438352-18438472 5.55e-01 120 chr2R:15984544-15984664 3.16e-02 8_[+1(6.60e-05)]_104 chr2L:5209972-5210092 1.00e+00 120 chr2R:8131585-8131705 3.90e-02 120 chrX:18407121-18407241 4.10e-01 120 chr3L:8997420-8997540 1.06e-02 70_[+2(5.17e-05)]_42 chr3R:23067520-23067640 1.00e+00 120 chr2L:3880235-3880355 7.16e-01 120 chrX:18094870-18094990 9.91e-01 120 chrX:9061499-9061619 9.01e-01 120 chr3R:21208524-21208644 9.31e-02 120 chr2L:18713841-18713961 4.22e-01 120 chr3R:23938801-23938921 4.39e-02 120 chrX:15314131-15314251 9.80e-02 98_[+2(2.22e-05)]_14 chrX:10362972-10363092 9.41e-01 120 chr2L:18459790-18459910 8.67e-03 104_[+2(4.76e-05)]_8 chr3R:31218643-31218763 8.02e-03 96_[+2(8.44e-06)]_16 chrX:8112816-8112936 6.67e-01 120 chr2L:7886028-7886148 1.00e+00 120 chr3R:21134071-21134191 1.00e+00 120 chrX:13307348-13307468 1.00e+00 120 chr2R:7463336-7463456 9.48e-01 120 chr2L:8087239-8087359 8.15e-01 120 chr3L:1612270-1612390 5.79e-02 120 chr3R:18981108-18981228 6.35e-01 120 chr3L:12275748-12275868 1.00e+00 120 chr3R:28829718-28829838 3.32e-01 120 chr2R:13219121-13219241 1.61e-01 120 chr2L:5117172-5117292 4.25e-01 120 chrX:13296899-13297019 9.83e-01 120 chr3R:23139625-23139745 2.93e-01 120 chrX:10785034-10785154 3.76e-01 120 chr3L:4116686-4116806 1.00e+00 120 chrX:11441135-11441255 1.00e+00 120 chr3R:5302031-5302151 1.81e-04 16_[+1(1.03e-06)]_96 chrX:12611766-12611886 9.86e-01 120 chr3R:10380110-10380230 9.99e-01 120 chr2R:20257802-20257922 9.99e-01 120 chrX:15312550-15312670 8.33e-02 120 chr3L:9072186-9072306 3.95e-02 50_[+2(1.35e-05)]_62 chr2R:18141027-18141147 3.53e-01 120 chrX:11087618-11087738 6.44e-02 120 chr3L:17658965-17659085 8.93e-01 120 chr2R:10272884-10273004 1.24e-01 120 chr2R:9114054-9114174 3.38e-01 37_[+2(9.00e-05)]_75 chr3R:20622175-20622295 1.10e-01 120 chrX:21519547-21519667 7.40e-06 55_[+1(2.90e-06)]_57 chr2L:4965569-4965689 6.53e-01 120 chr2L:8214043-8214163 3.46e-01 44_[+2(6.38e-05)]_68 chr3R:13819168-13819288 9.65e-05 63_[+5(4.89e-05)]_49 chrX:13990585-13990705 3.31e-02 81_[+2(4.76e-05)]_31 chr3R:10679268-10679388 1.00e+00 120 chr2R:14973343-14973463 4.09e-02 18_[+1(8.30e-05)]_94 chrX:6255529-6255649 2.47e-02 120 chrX:9466249-9466369 2.21e-01 120 chr3L:9056491-9056611 3.16e-02 8_[+2(3.67e-05)]_36_[+2(6.38e-05)]_\ 60 chr3R:23164282-23164402 3.51e-03 81_[+1(3.29e-05)]_31 chr3L:8576183-8576303 1.00e+00 120 chr3R:27561244-27561364 5.58e-03 90_[+1(1.22e-05)]_14_[+1(6.60e-05)] chrX:6344386-6344506 3.78e-03 120 chrX:2270357-2270477 1.34e-01 120 chr2L:12046607-12046727 6.54e-01 120 chr2L:13156478-13156598 8.61e-01 120 chr2L:18967049-18967169 4.28e-01 120 chrX:13735077-13735197 7.41e-01 120 chr3L:12799176-12799296 3.89e-01 120 chr2R:15846354-15846474 3.31e-01 120 chr3R:19859646-19859766 5.21e-01 120 chr2L:14405134-14405254 8.47e-01 120 chr2R:24295117-24295237 5.51e-02 120 chrX:18657586-18657706 2.49e-01 120 chr3L:15511770-15511890 9.72e-02 120 chrX:10325013-10325133 9.26e-01 120 chr3L:16602878-16602998 4.78e-02 107_[+1(7.38e-05)]_5 chr2R:13957331-13957451 1.01e-01 86_[+1(3.29e-05)]_26 chr3L:16613082-16613202 4.18e-08 74_[+4(4.55e-06)]_6_[+2(2.22e-05)]_\ 11_[+2(2.77e-05)]_5 chr3L:12798970-12799090 2.21e-02 49_[+2(8.44e-06)]_63 chr3R:14557653-14557773 5.03e-08 45_[+4(9.85e-07)]_67 chrX:2270112-2270232 9.03e-02 120 chr2R:13015418-13015538 1.00e+00 120 chrX:8231788-8231908 6.03e-01 120 chr2R:13507270-13507390 1.04e-03 74_[+1(7.38e-05)]_38 chr2R:9603341-9603461 6.49e-03 7_[+4(2.77e-06)]_105 chr2R:19178930-19179050 9.93e-03 98_[+1(1.22e-05)]_14 chr2R:22420664-22420784 9.32e-01 120 chrX:15043965-15044085 8.48e-01 120 chr3R:30099626-30099746 2.71e-02 35_[+1(4.52e-05)]_77 chr3R:17394916-17395036 9.52e-01 120 chr4:557697-557817 4.14e-01 120 chrX:15746264-15746384 4.97e-01 120 chr3R:11173251-11173371 9.31e-01 120 chr3L:3159738-3159858 7.33e-01 120 chrX:2742238-2742358 1.20e-02 10_[+1(1.61e-05)]_102 chrX:19878844-19878964 1.00e+00 120 chr2R:13960940-13961060 5.56e-01 120 chrX:17860886-17861006 6.00e-01 120 chrX:13376883-13377003 9.67e-01 120 chr3R:27604657-27604777 1.54e-01 120 chrX:17113397-17113517 8.43e-01 120 chr3L:19815606-19815726 3.61e-03 4_[+2(4.76e-05)]_64_[+2(4.76e-05)]_\ 36 chr3R:21931484-21931604 1.00e+00 120 chr3R:17394716-17394836 2.24e-01 65_[+2(5.56e-05)]_47 chrX:11820526-11820646 9.77e-01 120 chrX:3720267-3720387 2.10e-01 120 chr2L:8071422-8071542 9.68e-01 120 chrX:2591710-2591830 8.83e-02 11_[+2(1.71e-05)]_101 chr2L:203618-203738 1.75e-01 120 chr3R:15548197-15548317 2.64e-02 108_[+1(9.89e-05)]_4 chr2L:10849677-10849797 8.89e-01 120 chrX:15312333-15312453 1.00e+00 120 chrX:13254623-13254743 1.27e-01 34_[+1(9.89e-05)]_78 chr3L:9065217-9065337 4.99e-02 120 chr3R:15139694-15139814 9.72e-02 120 chr3R:7793897-7794017 1.55e-01 120 chr2R:16720012-16720132 2.83e-01 50_[+2(7.27e-05)]_62 chr3R:27925239-27925359 1.78e-01 120 chr3R:11758851-11758971 3.57e-01 120 chr3R:10863134-10863254 4.98e-04 68_[+1(8.30e-05)]_44 chr3L:12270062-12270182 9.86e-01 120 chr2L:9785979-9786099 9.72e-02 120 chr3R:26261038-26261158 3.09e-01 120 chr2R:18846521-18846641 6.82e-01 120 chr3R:15139493-15139613 9.87e-01 120 chr3R:21176763-21176883 3.79e-02 120 chr3L:16714278-16714398 2.03e-05 [+1(1.03e-06)]_3_[+1(6.60e-05)]_101 chr3L:2805528-2805648 1.01e-01 120 chrX:9156435-9156555 1.75e-02 53_[+2(8.28e-05)]_59 chr2L:8362930-8363050 3.18e-01 120 chr2L:155249-155369 6.75e-02 120 chrX:16559899-16560019 2.49e-01 120 chr3R:24651262-24651382 7.63e-06 44_[+2(8.28e-05)]_48_[+5(5.01e-06)]_\ 12 chr3R:21193766-21193886 1.65e-01 120 chr3R:27919485-27919605 1.00e+00 120 chrX:14805877-14805997 5.79e-01 120 chr3L:14003837-14003957 5.65e-02 48_[+2(4.76e-05)]_64 chr2R:16197138-16197258 1.87e-03 16_[+2(2.77e-05)]_20_[+2(1.82e-05)]_\ 11_[+1(9.89e-05)]_49 chr2L:5278586-5278706 7.13e-01 120 chr2L:13839034-13839154 9.12e-01 120 chr2R:14161312-14161432 9.32e-01 120 chrX:10363172-10363292 6.56e-01 120 chr3L:9698411-9698531 1.00e-01 120 chr2R:13009174-13009294 1.23e-08 77_[+2(3.05e-06)]_24_[+3(1.74e-06)]_\ 3 chr2L:2166019-2166139 3.63e-03 7_[+2(9.57e-06)]_105 chrX:635902-636022 9.86e-01 120 chrX:22449402-22449522 3.04e-05 9_[+4(5.08e-05)]_14_[+1(4.52e-05)]_\ 5_[+5(5.01e-06)]_68 chr2L:13203361-13203481 1.00e+00 120 chr2R:12035188-12035308 2.43e-01 42_[+2(7.27e-05)]_70 chr2R:14604302-14604422 3.84e-06 13_[+4(7.78e-06)]_99 chrX:12723415-12723535 1.79e-01 120 chr2L:8088224-8088344 5.16e-02 33_[+1(4.52e-05)]_79 chr3R:15320472-15320592 9.19e-04 57_[+1(2.90e-06)]_55 chr2L:2857952-2858072 3.11e-08 47_[+5(5.01e-06)]_56_[+2(2.77e-05)]_\ 1 chr3L:17049917-17050037 8.69e-01 120 chr3R:22034220-22034340 1.58e-01 120 chrX:22479471-22479591 2.24e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n03.farnam.hpc.yale.internal ********************************************************************************